Citrus Sinensis ID: 042875

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS
Secondary Structure (PSIPRED)
ccccEEEEEEEccccccEEccHHHHcccccccEEEEcccccccccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccEEcccccccccccccccccccccEEEcccccccccccccccccccccEEccccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccHHccccccccEEEccccccccccccccccccEEEccccccccEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccccccccHHHcccccccEEEEccccccccccccccccHHHHccHHHHcEEEccccccccccHHcccHHcEEEEccccccccccccccccccHHHcccccccEEEcccccccccccHHcccccccEEEcccccccccccHHcccccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHHHcccEEEccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccccHcccccEEEcccccccccccHHHccccccEEEccccccccccccc
Coil and Loop (DISEMBL)
GTDAIEGIFLDlskikcinldpgaftnmsnlrllkfyvpkfyeierfpmqlpngleylpeklrylhwdtyplrilpsnfkpknlVELNLRFskveqpwegekacvpssiqnfkyLSALsfegckslrsfpsnlhfvcpvtINFSYCVTLIefpqisgkITRLYldqsaieevpssiecltdlevldlrdckRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKrinldgtaitelpssfenlpgleelfvsdcskldklpdnignleSLRHISAAGSAisqlpssvadsnALLILDFSRckglvslprSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLksldlrgnnfesLPASIKQLSRLCSLDLRRcnmlqslpalplCLKYLHLtgcnmlrslpelplclqeldatncnrlqslpeips
Flexible Loop (DISEMBL)
GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEvpssiecltdlevldlrdckRLKRistrfcklrslvdlfvngCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNrlqslpeips
Low Complexity Region (SEG)
GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKglvslprslllglsslgllYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQlsrlcsldlrrcNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS
Disordered region (IsUnstruct)
****IEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAA**********VADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCN**********
Disordered Region (DISOPRED)
GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIP*
Disordered Region (DISEMBL)
GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS
Disordered Region (DISPRO)
*TDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.601	0.137	0.374	3e-43
Q40392	1144	TMV resistance protein N	N/A	no	0.826	0.312	0.332	2e-35
Q9FH83	1288	Probable WRKY transcripti	no	no	0.789	0.264	0.305	3e-34
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.935	0.310	0.3	2e-30
Q9FL92	1372	Probable WRKY transcripti	no	no	0.678	0.213	0.294	3e-26
O82500	1095	Putative disease resistan	no	no	0.747	0.294	0.270	4e-23
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.648	0.173	0.265	2e-19
Q80TH2	1402	Protein LAP2 OS=Mus muscu	yes	no	0.680	0.209	0.265	4e-16
Q96RT1	1412	Protein LAP2 OS=Homo sapi	no	no	0.680	0.208	0.268	1e-15
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.648	0.273	0.258	2e-15

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/310 (37%), Positives = 160/310 (51%), Gaps = 50/310 (16%)

Query: 1    GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPE 60
            GT AIEGIFLD+  +K  + +P  F  M NLRLLK Y  K  E  +  +  P GLEYLP 
Sbjct: 1149 GTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCSKAEE--KHGVSFPQGLEYLPS 1205

Query: 61   KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKA--CVP------------ 106
            KLR LHW+ YPL  LP +F P+NLVELNL  S  ++ W+G+KA  C              
Sbjct: 1206 KLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRL 1265

Query: 107  ------------SSIQNFKYLSA---------------------LSFEGCKSLRSFPSNL 133
                        SS  N +++                       L+ +GC  L + PS +
Sbjct: 1266 SYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMV 1325

Query: 134  HFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRL 193
                   +N S C  L  FP+IS  +  LY+  + I+E+PSSI+ L  LE LDL + + L
Sbjct: 1326 DLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHL 1385

Query: 194  KRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGL 253
            K + T   KL+ L  L ++GC++LERFP+   +M+ L+ ++L  T I ELPSS   L  L
Sbjct: 1386 KNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTAL 1445

Query: 254  EELFVSDCSK 263
            +EL   D  +
Sbjct: 1446 DELLFVDSRR 1455

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 144/433 (33%), Positives = 198/433 (45%), Gaps = 76/433 (17%)

Query: 1   GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPE 60
           GT A+E I++  S    +     A  NM  LR+        + + R        ++YLP 
Sbjct: 526 GTMAMEAIWVS-SYSSTLRFSNQAVKNMKRLRV--------FNMGRSSTHY--AIDYLPN 574

Query: 61  KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSF 120
            LR      YP    PS F+ K LV L LR + +   W  E   +P              
Sbjct: 575 NLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWT-ETKHLP-------------- 619

Query: 121 EGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQ---SAIEEVPSSIE 177
               SLR             I+ S+   L   P  +G     Y++    S +EEV  S+ 
Sbjct: 620 ----SLRR------------IDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLG 663

Query: 178 CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG 237
           C + +  L L DCK LKR       + SL  L +  C +LE+ PEI  +M+   +I++ G
Sbjct: 664 CCSKVIGLYLNDCKSLKRFPC--VNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQG 721

Query: 238 TAITELPSS-FE------------------------NLPGLEELFVSDCSKLDKLPDNIG 272
           + I ELPSS F+                         L  L  L VS CSKL+ LP+ IG
Sbjct: 722 SGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIG 781

Query: 273 NLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPR-SLLLGLSSLGLLYIM 331
           +L++LR   A+ + I + PSS+   N L+IL F   K  V      +  GL SL  L + 
Sbjct: 782 DLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLS 841

Query: 332 NCAVME--IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALP 389
            C +++  +P+EI  LSSLK LDL  NNFE LP+SI QL  L SLDL+ C  L  LP LP
Sbjct: 842 YCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELP 901

Query: 390 LCLKYLHLTGCNM 402
             L  LH+  C+M
Sbjct: 902 PELNELHVD-CHM 913

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  146 bits (369), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 134/438 (30%), Positives = 203/438 (46%), Gaps = 97/438 (22%)

Query: 1   GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYV--PKFYEIERFPMQLPNGLEYL 58
           G++ IEG+FLD S ++  +L P AF NM NLRLLK Y   P+ + +  FP      L  L
Sbjct: 497 GSEEIEGLFLDTSNLR-FDLQPSAFKNMLNLRLLKIYCSNPEVHPVINFPT---GSLHSL 552

Query: 59  PEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKA---------CVPSSI 109
           P +LR LHW+ YPL+ LP NF P++LVE+N+ +S++++ W G K          C    +
Sbjct: 553 PNELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHL 612

Query: 110 QNF------KYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLY 163
            +       + L  +  +GC  L++FP+    +    +N S C+ +    +I   I +L+
Sbjct: 613 VDIDDLLKAENLEVIDLQGCTRLQNFPAAGRLLRLRVVNLSGCIKIKSVLEIPPNIEKLH 672

Query: 164 LDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEI 223
           L  + I  +P                      +ST     R LV+        L   P +
Sbjct: 673 LQGTGILALP----------------------VSTVKPNHRELVNF-------LTEIPGL 703

Query: 224 LEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAA 283
            E++E L       T++ E  SS ++L  L  L + DCS L  LP N+ NL+        
Sbjct: 704 SEELERL-------TSLLESNSSCQDLGKLICLELKDCSCLQSLP-NMANLD-------- 747

Query: 284 GSAISQLPSSVADSNALLILDFSRCKGLVSL---PRSLLLGLSSLGLLYIMNCAVMEIPQ 340
                           L +LD S C  L S+   PR        L  LY+   A+ E+PQ
Sbjct: 748 ----------------LNVLDLSGCSSLNSIQGFPR-------FLKQLYLGGTAIREVPQ 784

Query: 341 EIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGC 400
                 SL+ L+  G+   SLP ++  L  L  LDL  C+ L+++   P  LK L+  G 
Sbjct: 785 ---LPQSLEILNAHGSCLRSLP-NMANLEFLKVLDLSGCSELETIQGFPRNLKELYFAG- 839

Query: 401 NMLRSLPELPLCLQELDA 418
             LR +P+LPL L+ L+A
Sbjct: 840 TTLREVPQLPLSLEVLNA 857

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 144/480 (30%), Positives = 216/480 (45%), Gaps = 76/480 (15%)

Query: 1   GTDAIEGI---FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEY 57
           GT+ + GI   F +    + + +D  +F  M NL+ L+           +   LP  L Y
Sbjct: 515 GTETLLGIRLPFEEYFSTRPLLIDKESFKGMRNLQYLEI---------GYYGDLPQSLVY 565

Query: 58  LPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGE---------------- 101
           LP KLR L WD  PL+ LPS FK + LV L +++SK+E+ WEG                 
Sbjct: 566 LPLKLRLLDWDDCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNN 625

Query: 102 ---------------------KACV--PSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCP 138
                                K+ V  PSSIQN   L  L    CK L SFP++L+    
Sbjct: 626 LKEIPDLSLAINLEELDLVGCKSLVTLPSSIQNATKLIYLDMSDCKKLESFPTDLNLESL 685

Query: 139 VTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEV---LDLRDCKRLKR 195
             +N + C  L  FP I    + +   +   E V    +C  +  +   LD  DC  L R
Sbjct: 686 EYLNLTGCPNLRNFPAIKMGCSDVDFPEGRNEIVVE--DCFWNKNLPAGLDYLDC--LTR 741

Query: 196 ISTRFCKLR--SLVDLFVNGCLNLERFPEILEKMEHLKRINL-DGTAITELPSSFENLPG 252
                C+ R   L  L V G  + E+  E ++ +  L+ ++L +   +TE+P        
Sbjct: 742 CMP--CEFRPEQLAFLNVRGYKH-EKLWEGIQSLGSLEGMDLSESENLTEIP-DLSKATK 797

Query: 253 LEELFVSDCSKLDKLPDNIGNLESLRHISAAG-SAISQLPSSVADSNALLILDFSRCKGL 311
           LE L +++C  L  LP  IGNL  L  +     + +  LP+ V + ++L  LD S C  L
Sbjct: 798 LESLILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSSL 856

Query: 312 VSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRG-NNFESLPASIKQLSR 370
            S P    L  +++  LY+ N A+ EIP  I  L  L  L+++     E LP  +  LS 
Sbjct: 857 RSFP----LISTNIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDV-NLSS 911

Query: 371 LCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLC--LQELDATNCNRLQSLP 428
           L +LDL  C+ L+S P +   +K+L+L     +  +P+L     L+ L   NC  L +LP
Sbjct: 912 LETLDLSGCSSLRSFPLISESIKWLYLEN-TAIEEIPDLSKATNLKNLKLNNCKSLVTLP 970

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  120 bits (300), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 160/367 (43%), Gaps = 74/367 (20%)

Query: 3   DAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYV--PKFYEIERFPMQLPNGLEYLPE 60
           + IEG+FLD S +   ++   AF NM NLRL K Y   P+ + +  F   L   L  LP 
Sbjct: 492 EEIEGMFLDTSNL-SFDIKHVAFDNMLNLRLFKIYSSNPEVHHVNNF---LKGSLSSLPN 547

Query: 61  KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKA---------CVPSSIQN 111
            LR LHW+ YPL+ LP NF P +LVE+N+ +S++++ W G K          C    + +
Sbjct: 548 VLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVD 607

Query: 112 F------KYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLD 165
                  + L  +  +GC  L+SFP+    +    +N S C  +  FP+I   I  L L 
Sbjct: 608 IDDLLKAQNLEVVDLQGCTRLQSFPATGQLLHLRVVNLSGCTEIKSFPEIPPNIETLNLQ 667

Query: 166 QSAIEEVPSSI------------------ECLTDLEVLDLRDCKRLKRISTRFCKLRSLV 207
            + I E+P SI                    +++LE  DL+    L +IST +     L 
Sbjct: 668 GTGIIELPLSIVKPNYRELLNLLAEIPGLSGVSNLEQSDLKPLTSLMKISTSYQNPGKLS 727

Query: 208 DLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKL 267
            L +N C  L   P ++                        NL  L+ L +S CS+L+ +
Sbjct: 728 CLELNDCSRLRSLPNMV------------------------NLELLKALDLSGCSELETI 763

Query: 268 PDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGL 327
                NL+ L  +  A   + QLP S         L+F    G VSL +S+ L    L +
Sbjct: 764 QGFPRNLKELYLVGTAVRQVPQLPQS---------LEFFNAHGCVSL-KSIRLDFKKLPV 813

Query: 328 LYIM-NC 333
            Y   NC
Sbjct: 814 HYTFSNC 820

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 174/407 (42%), Gaps = 84/407 (20%)

Query: 1   GTDAIEGIFLDLSKIKC-INLDPGAFTNMSNLRLLKFYVPK-FYEIERFPMQLPN-GLEY 57
           GT  + GI LD+ +IK  + +    F  M NL  LKFY+     +  +  +QLP  GL Y
Sbjct: 525 GTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQLPEEGLSY 584

Query: 58  LPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEK--------------- 102
           LP+ LR LHWD YPL   PS+F+P+ LVELN+  SK+++ W G +               
Sbjct: 585 LPQ-LRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRN 643

Query: 103 ------------------------ACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCP 138
                                     +PSSI+N ++L  L    CK L   P+N++    
Sbjct: 644 LEILPNLMEATKLNRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLEIIPTNINLPSL 703

Query: 139 VTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIST 198
             ++F YC  L  FP+IS  I  L L  +AI EVP S++  + ++               
Sbjct: 704 EVLHFRYCTRLQTFPEISTNIRLLNLIGTAITEVPPSVKYWSKID--------------- 748

Query: 199 RFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFV 258
             C  R+ V   V+        P +LEK+        +   +  +P   + LP L+ + +
Sbjct: 749 EICMERAKVKRLVH-------VPYVLEKL-----CLRENKELETIPRYLKYLPRLQMIDI 796

Query: 259 SDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRC-----KGLVS 313
           S C  +  LP   G++ +L  ++     I          N  + L+F  C     +    
Sbjct: 797 SYCINIISLPKLPGSVSALTAVNCESLQILH----GHFRNKSIHLNFINCLKLGQRAQEK 852

Query: 314 LPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE 359
           + RS+ +  SS    YI +    E +P   +Y S+  S+ +  N  +
Sbjct: 853 IHRSVYIHQSS----YIADVLPGEHVPAYFSYRSTGSSIMIHSNKVD 895

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 152/346 (43%), Gaps = 66/346 (19%)

Query: 2   TDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEK 61
            + IE IFLD S +K  ++   AF NM NL+ LK Y      I    +  P GL+ LP +
Sbjct: 516 AEHIESIFLDTSNVK-FDVKHDAFKNMFNLKFLKIYNSCSKYIS--GLNFPKGLDSLPYE 572

Query: 62  LRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACV-------PSSIQ---- 110
           LR LHW+ YPL+ LP +F   +LV+L++ +S++ +     K  V         S+Q    
Sbjct: 573 LRLLHWENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVEC 632

Query: 111 ----NFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQ 166
                 + +  +  +GC  L+ FP          +N S C  +  F  +   I  L+L  
Sbjct: 633 DILIYAQNIELIDLQGCTGLQRFPDTSQLQNLRVVNLSGCTEIKCFSGVPPNIEELHLQG 692

Query: 167 SAIEEVP------------------SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVD 208
           + I E+P                  + +E  +D+E +DL     L  +++    +  LV 
Sbjct: 693 TRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLECVTNLATVTSNNHVMGKLVC 752

Query: 209 LFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLP 268
           L +  C NL   P+++                        +L  L+ L++S CS+L+K+ 
Sbjct: 753 LNMKYCSNLRGLPDMV------------------------SLESLKVLYLSGCSELEKI- 787

Query: 269 DNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSL 314
             +G   +L+ +   G+AI +LP      N+L  L+   CK L S+
Sbjct: 788 --MGFPRNLKKLYVGGTAIRELPQL---PNSLEFLNAHGCKHLKSI 828

Arabidopsis thaliana (taxid: 3702)

>sp|Q80TH2|LAP2_MOUSE Protein LAP2 OS=Mus musculus GN=Erbb2ip PE=1 SV=3

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 155/335 (46%), Gaps = 41/335 (12%)

Query: 103 ACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKI--- 159
             +P+SI N   L  L       ++ FP N+     +TI  +    + + P    ++   
Sbjct: 82  TTLPASIANLINLRELDV-SKNGIQEFPENIKNCKVLTIVEASVNPISKLPDGFSQLLNL 140

Query: 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER 219
           T+LYL+ + +E +P++   LT L++L+LR+ +                         L+ 
Sbjct: 141 TQLYLNDAFLEFLPANFGRLTKLQILELRENQ-------------------------LKM 175

Query: 220 FPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH 279
            P+ + ++  L+R++L     TE+P   E L GL E ++ D ++L  +P  IG+L  L +
Sbjct: 176 LPKTMNRLTQLERLDLGSNEFTEVPEVLEQLSGLREFWM-DGNRLTFIPGFIGSLRQLTY 234

Query: 280 ISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP 339
           +  + + I  +   ++    L     S    L  LP + +  L ++  L I    +M +P
Sbjct: 235 LDVSKNNIEMVEEGISTCENLQDFLLS-SNSLQQLPET-IGSLKNVTTLKIDENQLMYLP 292

Query: 340 QEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLT- 398
             I  L S++ LD   N  E+LP+SI QL+ + +      N LQ LP  P    + ++T 
Sbjct: 293 DSIGGLRSIEELDCSFNEIEALPSSIGQLTNMRTFAADH-NYLQQLP--PEIGNWKNITV 349

Query: 399 ---GCNMLRSLPELPLCLQELDATNC--NRLQSLP 428
               CN L +LPE    +Q+L   N   NRL++LP
Sbjct: 350 LFLHCNKLETLPEEMGDMQKLKVINLSDNRLKNLP 384

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated ERBB2 'Tyr-1248' receptor, it may contribute to stabilize this unphosphorylated state.

Mus musculus (taxid: 10090)

>sp|Q96RT1|LAP2_HUMAN Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 157/335 (46%), Gaps = 41/335 (12%)

Query: 103 ACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKI--- 159
             +P+SI N   L  L       ++ FP N+     +TI  +    + + P    ++   
Sbjct: 82  TTLPASIANLINLRELDV-SKNGIQEFPENIKNCKVLTIVEASVNPISKLPDGFSQLLNL 140

Query: 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER 219
           T+LYL+ + +E +P++   LT L++L+LR+ +                         L+ 
Sbjct: 141 TQLYLNDAFLEFLPANFGRLTKLQILELRENQ-------------------------LKM 175

Query: 220 FPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH 279
            P+ + ++  L+R++L     TE+P   E L GL+E ++ D ++L  +P  IG+L+ L +
Sbjct: 176 LPKTMNRLTQLERLDLGSNEFTEVPEVLEQLSGLKEFWM-DANRLTFIPGFIGSLKQLTY 234

Query: 280 ISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP 339
           +  + + I  +   ++    L  L  S    L  LP + +  L ++  L I    +M +P
Sbjct: 235 LDVSKNNIEMVEEGISTCENLQDLLLS-SNSLQQLPET-IGSLKNITTLKIDENQLMYLP 292

Query: 340 QEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLT- 398
             I  L S++ LD   N  E+LP+SI QL+ L +      N LQ LP  P    + ++T 
Sbjct: 293 DSIGGLISVEELDCSFNEVEALPSSIGQLTNLRTFAADH-NYLQQLP--PEIGSWKNITV 349

Query: 399 ---GCNMLRSLPELPLCLQELDATNC--NRLQSLP 428
                N L +LPE    +Q+L   N   NRL++LP
Sbjct: 350 LFLHSNKLETLPEEMGDMQKLKVINLSDNRLKNLP 384

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated 'Tyr-1248' of receptor ERBB2, it may contribute to stabilize this unphosphorylated state.

Homo sapiens (taxid: 9606)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 53/333 (15%)

Query: 104 CVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVT-LIEFPQISG--KIT 160
            +P++++N   L  LS +G K+ ++ P  + +  P         T L   P + G   + 
Sbjct: 238 ALPATLENLFLLETLSLKGAKNFKALPDAV-WRLPALQELKLSETGLKSLPPVGGGSALQ 296

Query: 161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERF 220
           RL ++ S +E++P+    L  L  L L + K L+++S+   +L +L  L +     LER 
Sbjct: 297 RLTIEDSPLEQLPAGFADLDQLASLSLSNTK-LEKLSSGIGQLPALKSLSLQDNPKLERL 355

Query: 221 PEILEKME------------------------------------------HLKRINLDGT 238
           P+ L ++E                                          +L  ++L  T
Sbjct: 356 PKSLGQVEELTLIGGRIHALPSASGMSSLQKLTVDNSSLAKLPADFGALGNLAHVSLSNT 415

Query: 239 AITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADS 297
            + +LP+S  NL  L+ L + D  KL  LP + G L  L+ ++  G+ I +LPS   A S
Sbjct: 416 KLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLNGNRIHELPSMGGASS 475

Query: 298 NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGN- 356
              L +D +   GL     +    L +L  L + N  + E+P     L +LK+L L+GN 
Sbjct: 476 LQTLTVDDTALAGLP----ADFGALRNLAHLSLSNTQLRELPANTGNLHALKTLSLQGNQ 531

Query: 357 NFESLPASIKQLSRLCSLDLRRCNMLQSLPALP 389
              +LP+S+  LS L  L L+  ++ +  P  P
Sbjct: 532 QLATLPSSLGYLSGLEELTLKNSSVSELPPMGP 564

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
255563202	1158	leucine-rich repeat containing protein,	0.863	0.322	0.391	5e-70
255537137	1034	leucine-rich repeat containing protein,	0.851	0.355	0.407	9e-66
451798990	1335	TMV resistance protein N-like protein 7	0.939	0.304	0.338	3e-61
359487015	1610	PREDICTED: TMV resistance protein N-like	0.928	0.249	0.363	2e-59
359486071	1261	PREDICTED: TMV resistance protein N-like	0.962	0.329	0.346	4e-59
255544956	1403	leucine-rich repeat containing protein,	0.976	0.300	0.368	5e-59
451798988	1219	TMV resistance protein N-like protein 6	0.939	0.333	0.334	9e-59
147834354	1284	hypothetical protein VITISV_019700 [Viti	0.976	0.328	0.352	3e-58
296089409	1161	unnamed protein product [Vitis vinifera]	0.976	0.363	0.352	5e-58
359486075	1291	PREDICTED: TMV resistance protein N-like	0.939	0.314	0.333	5e-58

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 171/437 (39%), Positives = 243/437 (55%), Gaps = 64/437 (14%)

Query: 1   GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPK---FYEIERFPMQLPNGLEY 57
           GT+AI GI L +S+ + + L+  AFT +SNL+ L   +      +E E   +Q P GLE 
Sbjct: 565 GTEAIVGILLGMSEARKLELNRNAFTRISNLKFLILRMSNNCGGFE-EECKVQFPEGLES 623

Query: 58  LPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSA 117
           LP++LRYL+W  YPL+ LP+NF P NL+ELN  +S++E  WEG+K  VPSSI     L+ 
Sbjct: 624 LPQQLRYLYWHGYPLKFLPANFHPTNLIELNFPYSRLEGLWEGDK--VPSSIGQLTKLTF 681

Query: 118 LSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIE 177
           +S    K++RSFP+ +      T++ S C  L  FP++S  I  LYL+++AI+EVP SIE
Sbjct: 682 MSLRCSKNIRSFPTTIDLQSLETLDLSGCSNLKIFPEVSRNIRYLYLNETAIQEVPLSIE 741

Query: 178 CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG 237
            L+ L VL++++C  L+ I +   KL+SL  L ++GC  LE FPEILE   HL+ ++LD 
Sbjct: 742 HLSKLVVLNMKNCNELECIPSTIFKLKSLGVLILSGCKKLESFPEILETTNHLQHLSLDE 801

Query: 238 TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADS 297
           TA+  LP +F NL  L  L  SDCSKL KLP N+ NL+SL  + A G  +S LP+     
Sbjct: 802 TAMVNLPDTFCNLKALNMLNFSDCSKLGKLPKNMKNLKSLAELRAGGCNLSTLPA----- 856

Query: 298 NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNN 357
                                                      ++ YLSS+  L+L G+N
Sbjct: 857 -------------------------------------------DLKYLSSIVELNLSGSN 873

Query: 358 FESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPL-----C 412
           F+++PA I QLS+L  +++  C  LQSLP LP  ++YL+   C  L S+  L       C
Sbjct: 874 FDTMPAGINQLSKLRWINVTGCKRLQSLPELPPRIRYLNARDCRSLVSISGLKQLFELGC 933

Query: 413 LQELDA-----TNCNRL 424
              LD      TNC +L
Sbjct: 934 SNSLDDETFVFTNCFKL 950

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537137|ref|XP_002509635.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223549534|gb|EEF51022.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  257 bits (656), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 237/415 (57%), Gaps = 47/415 (11%)

Query: 1   GTDAIEGIFLDLSKI-KCINLDPGAFTNMSNLRLLKFYVPKF--YEIERFPMQLPNGLEY 57
           GT+AIE IFLD+SKI + I+L+P  F  MSNL+LL+FY P F   E++   ++L  GL+ 
Sbjct: 538 GTEAIEAIFLDMSKIDEIIDLNPNVFARMSNLKLLRFYDPNFDSRELKDIKVRLSRGLDS 597

Query: 58  LPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQ----------------PWEGE 101
           L  KL+YL+W+ YP + LP+NF PK+LVEL+L  SK+++                 W   
Sbjct: 598 LSSKLQYLYWNGYPSKTLPANFHPKDLVELHLPSSKLKRLPWKNMDLKKLKEIDLSWSSR 657

Query: 102 KACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITR 161
              VP  +     L+ ++    K +R FPS +      T+N S CV L  FP +S  I  
Sbjct: 658 LTTVPE-LSRATNLTCINLSDSKRIRRFPSTIGLDSLETLNLSDCVKLERFPDVSRSIRF 716

Query: 162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFP 221
           LYL  +AIEEVPSS+ CL+ L  L+L DC +LK + T  CK++SL  L ++GC NL+ FP
Sbjct: 717 LYLYGTAIEEVPSSVGCLSRLVSLNLFDCTKLKSLPTSICKIKSLELLCLSGCTNLKHFP 776

Query: 222 EILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHIS 281
           EI E M+ L  + LDGTAI +LP S ENL  L  L +S+C  L  LP++I     L+H+S
Sbjct: 777 EISETMDCLVELYLDGTAIADLPLSVENLKRLSSLSLSNCRNLVCLPESISK---LKHLS 833

Query: 282 AAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE 341
           +                    LDFS C  L  LP  L++ L     L    C + ++  +
Sbjct: 834 S--------------------LDFSDCPKLEKLPEELIVSLE----LIARGCHLSKLASD 869

Query: 342 IAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLH 396
           ++ LS L  LDL    FE+LP SIKQLS+L +LD+  C+ L+SLP L L L+++ 
Sbjct: 870 LSGLSCLSFLDLSKTKFETLPPSIKQLSQLITLDISFCDRLESLPDLSLSLQFIQ 924

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 250/514 (48%), Gaps = 108/514 (21%)

Query: 1    GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKF------------------------ 36
            GT+A+EGIFLDLS  K +N    AFT M  LRLLK                         
Sbjct: 526  GTEAVEGIFLDLSASKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDV 585

Query: 37   YVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQ 96
            ++ + Y   +  + L    ++L   LR L+W  YPL+  PSNF P+ LVELN+ FS+++Q
Sbjct: 586  WIERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQ 645

Query: 97   PWEGEKA----------------------CVPS-----------------SIQNFKYLSA 117
            PWEG+K                        VP+                 SI   K L  
Sbjct: 646  PWEGKKGFEKLKSIKLSHSQHLTKIPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIF 705

Query: 118  LSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITR---LYLDQSAIEEVPS 174
            L+ EGCK L+SF S++H      +  S C  L +FP++ G +     L L+ +AI+ +P 
Sbjct: 706  LNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPL 765

Query: 175  SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRIN 234
            SIE LT L +L+L++CK L+ +     KL+SL  L ++ C  L++ PEI E ME L  + 
Sbjct: 766  SIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELF 825

Query: 235  LDGTAITELPS------------------------SFENLPGLEELFVSDCSKLDKLPDN 270
            LDG+ I ELPS                        SF  L  L  L +  CS+L  LPDN
Sbjct: 826  LDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLRTLTLCGCSELKDLPDN 885

Query: 271  IGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLL---------- 320
            +G+L+ L  ++A GS + ++P S+     L IL  + CKG  S  R+++           
Sbjct: 886  LGSLQCLTELNADGSGVQEVPPSITLLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEEL 945

Query: 321  ------GLSSLGLLYIMNCAVME--IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLC 372
                  GL SL +L +  C + E  +P ++  + SL+ LDL  N+F ++PAS+  LSRL 
Sbjct: 946  RLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLR 1005

Query: 373  SLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSL 406
            SL L  C  LQSLP LP  ++ L+   C  L + 
Sbjct: 1006 SLTLEYCKSLQSLPELPSSVESLNAHSCTSLETF 1039

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487015|ref|XP_003633506.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 181/498 (36%), Positives = 246/498 (49%), Gaps = 97/498 (19%)

Query: 1    GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFY--VPKFYEIERFPMQLPNGLEYL 58
            GT+AIEGI L+LS++  I++   AF  M NLRLLK Y  +   +  E   ++L    E+ 
Sbjct: 737  GTEAIEGILLNLSRLTRIHITTEAFVMMKNLRLLKIYWDLESAFMREDNKVKLSKDFEFP 796

Query: 59   PEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGE----------KAC---- 104
              +LRYLHW  YPL  LP  F  ++LVEL++ +S +++ WEG+           +C    
Sbjct: 797  SYELRYLHWHGYPLESLPLGFYAEDLVELDMCYSSLKRLWEGDLLLEKLNTIRVSCSQHL 856

Query: 105  --VPSSIQNFKYLSALSFEGCKSLRS------------------------FPSNLHFVCP 138
              +P  I +   L  L  +GC SL                          FPS +     
Sbjct: 857  IEIPDIIVSAPNLEKLILDGCSSLLEVHPSIGKLNKLILLNLKNCKKLICFPSIIDMKAL 916

Query: 139  VTINFSYCVTLIEFPQISGKIT---RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKR 195
              +NFS C  L +FP I G +     LYL  +AIEE+PSSI  LT L +LDL+ CK LK 
Sbjct: 917  EILNFSSCSGLKKFPNIQGNMENLLELYLASTAIEELPSSIGHLTGLVLLDLKWCKNLKS 976

Query: 196  ISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPG--- 252
            + T  CKL+SL +L ++GC  LE FPE+ E M++LK + LDGT I  LP S E L G   
Sbjct: 977  LPTSICKLKSLENLSLSGCSKLESFPEVTENMDNLKELLLDGTPIEVLPLSIERLKGLIL 1036

Query: 253  ---------------------LEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP 291
                                 LE L VS CS+L+ LP N+G+L+ L  + A G+AI+Q P
Sbjct: 1037 LNLRKCKNLVSLSNGMCNLTSLETLIVSGCSQLNNLPRNLGSLQRLAQLHADGTAIAQPP 1096

Query: 292  SSVADSNALLILDFSRCKGLVSLPRS--------LLLGLSSLGL---------------- 327
             S+     L +L +  CK L   P S        LL G SS G+                
Sbjct: 1097 DSIVLLRNLQVLIYPGCKILA--PNSLGSLFSFWLLHGNSSNGIGLRLPSSFSSFRSLSN 1154

Query: 328  LYIMNCAVME--IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSL 385
            L I +C ++E  IP  I  L SLK LDL  NNF S+PA I +L+ L  L L +C  L  +
Sbjct: 1155 LDISDCKLIEGAIPNGICSLISLKKLDLSRNNFLSIPAGISELTNLKDLRLGQCQSLTGI 1214

Query: 386  PALPLCLKYLHLTGCNML 403
            P LP  ++ +    C  L
Sbjct: 1215 PELPPSVRDIDAHNCTAL 1232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 178/514 (34%), Positives = 258/514 (50%), Gaps = 98/514 (19%)

Query: 1    GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFY-------EIERFP----- 48
            GT+A+EG+ L+LS +K ++     FT M+ LR+L+FY  + +         +R+      
Sbjct: 530  GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIGRHNDRYKSPYTE 589

Query: 49   --MQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKAC-- 104
                L    ++L   LR LHWD YPL+ LPSNF P+ L+EL + FS++EQ WEG K+   
Sbjct: 590  CKFHLSGDFKFLSNHLRSLHWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 649

Query: 105  -------------------------------------VPSSIQNFKYLSALSFEGCKSLR 127
                                                 V  SI   K L  L+ EGCK+L+
Sbjct: 650  LKFIELSHSQHLIKTPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLK 709

Query: 128  SFPSNLHFVCPVTINFSYCVTLIEFPQISGKIT---RLYLDQSAIEEVPSSIECLTDLEV 184
            SF S++H     TI  S C  L +FP++ G +     L L  +AI+ +P SIE L  L +
Sbjct: 710  SFSSSIHLESLQTITLSGCSKLKKFPEVQGAMDNLPELSLKGTAIKGLPLSIEYLNGLSL 769

Query: 185  LDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP 244
            L+L +CK L+ +     KL+SL  L ++ C  L++ PEI E ME LK++ LD T + ELP
Sbjct: 770  LNLEECKSLESLPGCIFKLKSLKTLILSNCSRLKKLPEIQENMESLKKLFLDDTGLRELP 829

Query: 245  SSFENLPG------------------------LEELFVSDCSKLDKLPDNIGNLESLRHI 280
            SS E+L G                        L+ L +S CS+L KLPD++G+L+ L  +
Sbjct: 830  SSIEHLNGLVLLKLKNCKKLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLVKL 889

Query: 281  SAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSS---LGLLYIMNCAVME 337
             A G+ I ++P+S+     L +L  + CKG  S  R+L L L S    GL          
Sbjct: 890  KANGTGIQEVPTSITLLTKLEVLSLAGCKGGESKSRNLALCLRSSPTKGLR--------- 940

Query: 338  IPQEIAYLSSLKSLDLRGNNF--ESLPASIKQLSRLCSLDLRRCNMLQ--SLPALPLCLK 393
             P  +  L SL+ L+L G N    +LP+ +  LS L  LDL R + +   +L  LP  LK
Sbjct: 941  -PSFLPVLYSLRKLNLSGCNLLEGALPSDLSSLSWLECLDLSRNSFITVPNLSRLPR-LK 998

Query: 394  YLHLTGCNMLRSLPELPLCLQELDATNCNRLQSL 427
             L L  C  LRSLPELP  +++L A +C  L++ 
Sbjct: 999  RLILEHCKSLRSLPELPSNIEKLLANDCTSLETF 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 178/483 (36%), Positives = 256/483 (53%), Gaps = 61/483 (12%)

Query: 1    GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYE-------IERFPMQLPN 53
            GT A EGIFLD+SKI+ ++L   AF+ M NLRLLKFY   F         +    +   +
Sbjct: 533  GTFATEGIFLDISKIEKVDLSSVAFSKMWNLRLLKFYHNSFLSWKNPTGFVSESTLDSRD 592

Query: 54   GLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKAC--------- 104
            GL+ LP KL +LHW  YP   LPSNF  +NLVELN+ FS+V++ W G K           
Sbjct: 593  GLQSLPNKLCFLHWHGYPWESLPSNFSMENLVELNMPFSQVKELWTGVKHLQKLKLLDLH 652

Query: 105  ------------------------------VPSSIQNFKYLSALSFEGCKSLRSFPSNLH 134
                                          +PSSIQ  + L  LS   CK L+S PS + 
Sbjct: 653  DSELLVTLPDLSSASNLEKIILNNCTSLLEIPSSIQCLRKLVCLSLSNCKELQSLPSLIP 712

Query: 135  FVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLK 194
                 T+N S C  L +FP+ISG+I  L+LD + +EE PSS++ L  L +L L  C+ LK
Sbjct: 713  LKYLKTLNLSSCSNLKKFPEISGEIEELHLDGTGLEEWPSSVQYLDKLRLLSLDHCEDLK 772

Query: 195  RISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLE 254
             +      L SL +L ++ C +L+ FP+++  +++L   N+  TAI ELPSS  +L  L 
Sbjct: 773  SLPGSI-HLNSLDNLDLSWCSSLKNFPDVVGNIKYL---NVGHTAIEELPSSIGSLVSLT 828

Query: 255  ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSL 314
            +L + D +++ +LP +IGNL SL  ++   S+I +LPSS+   ++L+ L+ +    +  L
Sbjct: 829  KLNLKD-TEIKELPSSIGNLSSLVELNLKESSIKELPSSIGCLSSLVKLNIAVVD-IEEL 886

Query: 315  PRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSL 374
            P S L  LSSL    +    +  +P  I  L+SL  L+L     + LP SI  LS L  L
Sbjct: 887  PSS-LGQLSSLVEFNLEKSTLTALPSSIGCLTSLVKLNLAVTEIKELPPSIGCLSSLVEL 945

Query: 375  DLRRCNMLQSLP---ALPLCLKYLHLTGCNMLRSLP----ELPLCLQELDATNCNRLQSL 427
            +L +C ML SLP       CL+ L+L G   LRS+P    EL   LQ++   +C +L  L
Sbjct: 946  NLSQCPMLGSLPFSIGELKCLEKLYLCGLRRLRSIPSSIRELKR-LQDVYLNHCTKLSKL 1004

Query: 428  PEI 430
            P +
Sbjct: 1005 PSL 1007

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 172/514 (33%), Positives = 249/514 (48%), Gaps = 108/514 (21%)

Query: 1    GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKF------------------------ 36
            GT+A+EGIFLDLS+ K +N    AFT M  LRLLK                         
Sbjct: 518  GTEAVEGIFLDLSESKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDV 577

Query: 37   YVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQ 96
            +  + Y   +  + L    ++L   LR L+W  YPL+  PSNF P+ LVELN+ FS+++Q
Sbjct: 578  WTERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQ 637

Query: 97   PWEGEKA----------------------CVPS-----------------SIQNFKYLSA 117
             WEG+K                        VP+                 SI   K L  
Sbjct: 638  LWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIF 697

Query: 118  LSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITR---LYLDQSAIEEVPS 174
            L+ EGCK L+SF S++H      +  S C  L +FP++ G +     L L+ +AI+ +P 
Sbjct: 698  LNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPL 757

Query: 175  SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRIN 234
            SIE LT L +L+L++CK L+ +     KL+SL  L ++ C  L++ PEI E ME L  + 
Sbjct: 758  SIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELF 817

Query: 235  LDGTAITELPS------------------------SFENLPGLEELFVSDCSKLDKLPDN 270
            LDG+ I ELPS                        SF  L  L  L +  CS+L +LPD+
Sbjct: 818  LDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELPDD 877

Query: 271  IGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLL---------- 320
            +G+L+ L  ++A GS I ++P S+     L  L  + CKG  S  R+++           
Sbjct: 878  LGSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPTEEL 937

Query: 321  ------GLSSLGLLYIMNCAVME--IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLC 372
                  GL SL +L +  C + E  +P ++  + SL+ LDL  N+F ++PAS+  LSRL 
Sbjct: 938  RLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLR 997

Query: 373  SLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSL 406
            SL L  C  LQSLP LP  ++ L+   C  L + 
Sbjct: 998  SLTLEYCKSLQSLPELPSSVESLNAHSCTSLETF 1031

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834354|emb|CAN69843.1| hypothetical protein VITISV_019700 [Vitis vinifera]

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 173/491 (35%), Positives = 252/491 (51%), Gaps = 69/491 (14%)

Query: 1    GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFY------EIERFPMQLPNG 54
            GT+AIEGIFLD+S+ + I+    AF  M  LRL K Y    +      E ++F   LP  
Sbjct: 537  GTEAIEGIFLDMSRSREISFTTEAFRRMERLRLFKVYWSHGFVNYMGKEYQKFL--LPED 594

Query: 55   LEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKAC---------- 104
             E     LRYLHW+ Y L+ LPSNF  +NL+ELNL+ S +EQ W+G+K            
Sbjct: 595  FEIPSHDLRYLHWEGYSLKSLPSNFHGENLIELNLKHSNIEQLWQGKKYLEELKMLTLSE 654

Query: 105  ------VPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTI-NFSYCVTLIEFP---Q 154
                  +P    N   L  L+ E C+ L    S++  +  +T+ N   C  +   P   Q
Sbjct: 655  SQLLNEIPH-FSNMPNLEQLNIELCEKLDKVDSSIGILKKLTLLNLRGCQKISSLPSTIQ 713

Query: 155  ISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGC 214
                + RLYL   AI+E+PSSI  LT L+ L +R C+ L+ + +  C+L+SL +L + GC
Sbjct: 714  YLVSLKRLYLHSIAIDELPSSIHHLTQLQTLSIRGCENLRSLPSSICRLKSLEELDLYGC 773

Query: 215  LNLERFPEILEKMEHLKRINLDGTAITELPSSFE------------------------NL 250
             NL  FPEI+E ME L  +NL GT +  LPSS E                         L
Sbjct: 774  SNLXTFPEIMENMEWLTELNLSGTHVKGLPSSIEYLNHLTRLELRCCKNLRSLPSSIWRL 833

Query: 251  PGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKG 310
              LEEL +  CS L+  P+ + ++E L  ++ + + I +LP S+   N L  L    C+ 
Sbjct: 834  KSLEELDLFGCSNLETFPEIMEDMECLMELNLSRTCIKELPPSIGYLNHLTFLGLQCCQN 893

Query: 311  LVSLPRSL--LLGLSSLGLLYIMNCAVMEI-PQEIAYLSSLKSLDLRGNNFESLPASIKQ 367
            L SLP S+  L  L  L L Y   C+ +EI P+ +  +  L  LDL G + + LP+SI+ 
Sbjct: 894  LRSLPSSICRLKSLEELDLYY---CSNLEIFPEIMENMECLIKLDLSGTHIKELPSSIEY 950

Query: 368  LSRLCSLDLRRCNMLQSLPALPLCLKY---LHLTGCNMLRSLPEL---PLCLQELDATNC 421
            L+ L S+ L     L+SLP+    LK+   L+L GC+ L + PE+     CL++LD +  
Sbjct: 951  LNHLTSMRLVEXKNLRSLPSSICRLKFLEKLNLYGCSHLETFPEIMEDMECLKKLDLSGT 1010

Query: 422  NRLQSLPEIPS 432
                S+ ++PS
Sbjct: 1011 ----SIKKLPS 1017

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089409|emb|CBI39228.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 173/491 (35%), Positives = 252/491 (51%), Gaps = 69/491 (14%)

Query: 1   GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFY------EIERFPMQLPNG 54
           GT+AIEGIFLD+S+ + I+    AF  M  LRL K Y    +      E ++F   LP  
Sbjct: 347 GTEAIEGIFLDMSRSREISFTTEAFRRMERLRLFKVYWSHGFVNYMGKEYQKFL--LPED 404

Query: 55  LEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKAC---------- 104
            E     LRYLHW+ Y L+ LPSNF  +NL+ELNL+ S +EQ W+G+K            
Sbjct: 405 FEIPSHDLRYLHWEGYSLKSLPSNFHGENLIELNLKHSNIEQLWQGKKYLEELKMLTLSE 464

Query: 105 ------VPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTI-NFSYCVTLIEFP---Q 154
                 +P    N   L  L+ E C+ L    S++  +  +T+ N   C  +   P   Q
Sbjct: 465 SQLLNEIPH-FSNMPNLEQLNIELCEKLDKVDSSIGILKKLTLLNLRGCQKISSLPSTIQ 523

Query: 155 ISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGC 214
               + RLYL   AI+E+PSSI  LT L+ L +R C+ L+ + +  C+L+SL +L + GC
Sbjct: 524 YLVSLKRLYLHSIAIDELPSSIHHLTQLQTLSIRGCENLRSLPSSICRLKSLEELDLYGC 583

Query: 215 LNLERFPEILEKMEHLKRINLDGTAITELPSSFE------------------------NL 250
            NL  FPEI+E ME L  +NL GT +  LPSS E                         L
Sbjct: 584 SNLGTFPEIMENMEWLTELNLSGTHVKGLPSSIEYLNHLTRLELRCCKNLRSLPSSIWRL 643

Query: 251 PGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKG 310
             LEEL +  CS L+  P+ + ++E L  ++ + + I +LP S+   N L  L    C+ 
Sbjct: 644 KSLEELDLFGCSNLETFPEIMEDMECLMELNLSRTCIKELPPSIGYLNHLTFLGLQCCQN 703

Query: 311 LVSLPRSL--LLGLSSLGLLYIMNCAVMEI-PQEIAYLSSLKSLDLRGNNFESLPASIKQ 367
           L SLP S+  L  L  L L Y   C+ +EI P+ +  +  L  LDL G + + LP+SI+ 
Sbjct: 704 LRSLPSSICRLKSLEELDLYY---CSNLEIFPEIMENMECLIKLDLSGTHIKELPSSIEY 760

Query: 368 LSRLCSLDLRRCNMLQSLPALPLCLKY---LHLTGCNMLRSLPEL---PLCLQELDATNC 421
           L+ L S+ L     L+SLP+    LK+   L+L GC+ L + PE+     CL++LD +  
Sbjct: 761 LNHLTSMRLVESKNLRSLPSSICRLKFLEKLNLYGCSHLETFPEIMEDMECLKKLDLSGT 820

Query: 422 NRLQSLPEIPS 432
               S+ ++PS
Sbjct: 821 ----SIKKLPS 827

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 168/504 (33%), Positives = 248/504 (49%), Gaps = 98/504 (19%)

Query: 1    GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFY-------EIERFP----- 48
            GT+A+EG+ L+LS +K ++     FT M+ LR+L+FY  + +         +R+      
Sbjct: 530  GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTE 589

Query: 49   --MQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKAC-- 104
                L    ++L   LR L+WD YPL+ LPSNF P+ L+EL + FS++EQ WEG K+   
Sbjct: 590  CKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 649

Query: 105  -------------------------------------VPSSIQNFKYLSALSFEGCKSLR 127
                                                 V  SI   K L  L+ EGCK+L+
Sbjct: 650  LKFIELSHSQHLIKAPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLK 709

Query: 128  SFPSNLHFVCPVTINFSYCVTLIEFPQISG---KITRLYLDQSAIEEVPSSIECLTDLEV 184
            SF S++H      +  S C  L + P++ G    ++ L L  +AI+ +P SIE L  L +
Sbjct: 710  SFLSSIHLESLQILTLSGCSKLKKLPEVQGAMDNLSELSLKGTAIKGLPLSIEYLNGLAL 769

Query: 185  LDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP 244
             +L +CK L+ +     KL+SL  L ++ CL L++ PEI E ME LK + LD T + ELP
Sbjct: 770  FNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLRELP 829

Query: 245  SSFENLPG------------------------LEELFVSDCSKLDKLPDNIGNLESLRHI 280
            SS E+L G                        L+ L +S CS+L KLPD++G+L+ L  +
Sbjct: 830  SSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLLKL 889

Query: 281  SAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLG----------LSSLGLLYI 330
             A GS I ++PSS+     L +L  + CKG  S  R+L L           LSSL +L+ 
Sbjct: 890  KANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSRNLALSLRASPTDGLRLSSLTVLHS 949

Query: 331  M--------NCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML 382
            +        N     +P +++ LS L+ LDL  NNF ++P S+ +L  L  L +  C  L
Sbjct: 950  LKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRRLIVEHCKNL 1009

Query: 383  QSLPALPLCLKYLHLTGCNMLRSL 406
            QSLP LP  +K L    C  L + 
Sbjct: 1010 QSLPELPSSIKELLANDCTSLETF 1033

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.918	0.325	0.317	1.9e-42
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.953	0.347	0.307	7.7e-42
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.643	0.205	0.315	8.1e-38
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.930	0.332	0.290	2.5e-37
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.666	0.151	0.352	8.3e-37
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.810	0.270	0.329	6.8e-36
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.520	0.183	0.340	6.7e-34
TAIR|locus:2146253	1210	AT5G18370 [Arabidopsis thalian	0.671	0.239	0.328	2e-32
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.837	0.182	0.290	2.8e-32
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.675	0.240	0.325	8.9e-32

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 137/431 (31%), Positives = 209/431 (48%)

Query:     1 GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFY---VPKFYEIERFPMQLPNGLEY 57
             GTD I GIFLD SK++ + L   AF  M NL+ LK Y     +  E E F + L  GL +
Sbjct:   537 GTDKIRGIFLDTSKLRAMRLSAKAFQGMYNLKYLKIYDSHCSRGCEAE-FKLHLRRGLSF 595

Query:    58 LPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSA 117
             LP +L YLHW  YPL+ +P +F PKNLV+L L  S++E+ W+ EK      ++      +
Sbjct:   596 LPNELTYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDV--GMLKWVDLSHS 653

Query:   118 LSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRL-YL---DQSAIEEVP 173
             ++   C  L    +N H +    +N   C +L + P     + +L YL   D +++  +P
Sbjct:   654 INLRQCLGL----ANAHNL--ERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLP 707

Query:   174 SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVD-LFVNGCLNLERFPEILEKMEHLKR 232
               I+  + L+ L L  C  LK+    F  +   V+ L ++G + ++  PE ++    L  
Sbjct:   708 KGIKTQS-LQTLILSGCSSLKK----FPLISENVEVLLLDGTV-IKSLPESIQTFRRLAL 761

Query:   233 INLDGTA-ITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP 291
             +NL     +  L S    L  L+EL +S CS+L+  P+   ++ESL  +    ++I+++P
Sbjct:   762 LNLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLMDDTSITEMP 821

Query:   292 SSVADSNALLILDFSRCKXXXXXXXXX-----XXXXXXXXXXYIMNCAVMEIPQEIAYLS 346
               +  SN   I  FS C                         Y+  C++ ++P  I  LS
Sbjct:   822 KMMHLSN---IKTFSLCGTSSHVSVSMFFMPPTLGCSRLTDLYLSRCSLYKLPDNIGGLS 878

Query:   347 SLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPLCLKYLHLTGCNMLRSL 406
             SL+SL L GNN E+LP S  Q             ML+SLP LP  L+YL    C  L +L
Sbjct:   879 SLQSLCLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETL 938

Query:   407 --PELPLCLQE 415
               P  PL + E
Sbjct:   939 ANPLTPLTVGE 949

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 7.7e-42, P = 7.7e-42
 Identities = 136/442 (30%), Positives = 224/442 (50%)

Query:     1 GTDAIEGIFLDLSKI--KCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYL 58
             GT  + GI L+LS +    IN+   AF  M NL+ L+F+ P         + LP GL ++
Sbjct:   552 GTRTLIGIDLELSGVIEGVINISERAFERMCNLQFLRFHHPYGDRCHDI-LYLPQGLSHI 610

Query:    59 PEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSAL 118
               KLR LHW+ YPL  LP  F P+ LV++N+R S +E+ W+G +   P  I+N K++  L
Sbjct:   611 SRKLRLLHWERYPLTCLPPKFNPEFLVKINMRDSMLEKLWDGNE---P--IRNLKWMD-L 664

Query:   119 SFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLY----LDQSAIEEVPS 174
             SF  C +L+  P          +    C++L+E P   G  T L     +D S++ ++PS
Sbjct:   665 SF--CVNLKELPDFSTATNLQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPS 722

Query:   175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRIN 234
             SI  LT+L+ L L  C  L ++ + F  + SL +L ++GC +L   P  +  + +LK++ 
Sbjct:   723 SIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVY 782

Query:   235 LDG-TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS-AISQLPS 292
              DG +++ +LPSS  N   L+EL + +CS L + P ++ NL  L  ++ +G  ++ +LPS
Sbjct:   783 ADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPS 842

Query:   293 SVADSNALLILDFSRCKXXXXXXXXXXXXXXXXXXXYIMNCA-VMEIPQEIAYLSSLKSL 351
              + +   L  L  S C                    Y+  C+ ++E+P  I  +++L+SL
Sbjct:   843 -IGNVINLQSLYLSDCSSLMELPFTIENATNLDTL-YLDGCSNLLELPSSIWNITNLQSL 900

Query:   352 DLRG-NNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPLC---LKYLHLTGCNMLRSL- 406
              L G ++ + LP+ ++             + L  LP+       L YL ++ C+ L  L 
Sbjct:   901 YLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELN 960

Query:   407 ----PELPLCLQELDATNCNRL 424
                 P +P  L  LDA +C  L
Sbjct:   961 LVSHPVVPDSLI-LDAGDCESL 981

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 8.1e-38, Sum P(2) = 8.1e-38
 Identities = 95/301 (31%), Positives = 144/301 (47%)

Query:     2 TDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEK 61
             T+ IE IFLD+S +K   + P AF +M NLR LK Y     + +R  ++    L+ LP +
Sbjct:   359 TEDIEVIFLDMSNLKFF-VKPDAFKSMHNLRFLKIYSSNPGKHQR--IRFREALQSLPNE 415

Query:    62 LRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEK-----ACVPSS-------I 109
             LR LHW+ YPL+ LP +F P +LVELN+ +SK+++ W G K       V  S       I
Sbjct:   416 LRLLHWEDYPLQSLPQHFDPTHLVELNMPYSKLQKLWGGTKNLEMLKMVRLSHSQDLVEI 475

Query:   110 QNF---KYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQ 166
             +     K +  +  +GC  ++SFP+  H      IN S CV  I+  Q+  +      + 
Sbjct:   476 EELIKSKNIEVIDLQGCTKIQSFPATRHLQHLRVINLSGCVE-IKSTQLE-EFQGFPRNL 533

Query:   167 SAIEEVPSSIECLTD---LEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEI 223
               +    + I  +T    L  L++ D    KR+        +L  L         +   I
Sbjct:   534 KELYLSGTGIREVTSSIHLSSLEVLDLSNCKRLQNLPMGKGNLASLIKLMLSGCSKLQNI 593

Query:   224 LEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAA 283
              +   +LK + L GT+I E+PSS  +L  L      +C KL  LP  +GNL SL  +  +
Sbjct:   594 QDLPTNLKELYLAGTSIREVPSSICHLTQLVVFDAENCKKLQDLPMGMGNLISLTMLILS 653

Query:   284 G 284
             G
Sbjct:   654 G 654

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 2.5e-37, P = 2.5e-37
 Identities = 126/433 (29%), Positives = 204/433 (47%)

Query:     1 GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFY---VPKFYEIERFPMQLPNGLEY 57
             GT+ + GIFL++S+++ I L P AFT +S L+ LKF+     ++ + +    Q     ++
Sbjct:   528 GTECVRGIFLNMSEVRRIKLFPAAFTMLSKLKFLKFHSSHCSQWCDNDHI-FQCSKVPDH 586

Query:    58 LPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSA 117
              P++L YLHW  YP   LPS+F PK LV+L+LR+S ++Q WE EK     + ++ +++  
Sbjct:   587 FPDELVYLHWQGYPYDCLPSDFDPKELVDLSLRYSHIKQLWEDEK-----NTESLRWVDL 641

Query:   118 LSFEGCKSLR--SFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYL---DQSAIEEV 172
                +   +L   S   NL       ++   C +L     +      +YL   D +++E +
Sbjct:   642 GQSKDLLNLSGLSRAKNLE-----RLDLEGCTSLDLLGSVKQMNELIYLNLRDCTSLESL 696

Query:   173 PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKR 232
             P   + +  L+ L L  C +LK          S+  L + G   +ER  E +E +  L  
Sbjct:   697 PKGFK-IKSLKTLILSGCLKLKDFHIIS---ESIESLHLEGTA-IERVVEHIESLHSLIL 751

Query:   233 INLDGTA-ITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP 291
             +NL     +  LP+    L  L+EL +S CS L+ LP     +E L  +   G++I Q P
Sbjct:   752 LNLKNCEKLKYLPNDLYKLKSLQELVLSGCSALESLPPIKEKMECLEILLMDGTSIKQTP 811

Query:   292 SSVADSNALLILDFSR--CKXXXXXXXXXXXXXXXXXXXYIMNCAVMEIPQEIAYLSSLK 349
                  SN L I  F R                       Y+ NC + ++P + + L SL+
Sbjct:   812 EMSCLSN-LKICSFCRPVIDDSTGLVVLPFSGNSFLSDLYLTNCNIDKLPDKFSSLRSLR 870

Query:   350 SLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPLCLKYLHLTGCNMLRSLPE- 408
              L L  NN E+LP SI++              L+SLP LP  L+YL   GC  L ++ + 
Sbjct:   871 CLCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKSLPLLPSNLQYLDAHGCGSLENVSKP 930

Query:   409 --LPLCLQELDAT 419
               +PL  + +  T
Sbjct:   931 LTIPLVTERMHTT 943

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 8.3e-37, P = 8.3e-37
 Identities = 109/309 (35%), Positives = 170/309 (55%)

Query:     1 GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPE 60
             GT AIEGIFLD+  +K  + +P  F  M NLRLLK Y  K  E  +  +  P GLEYLP 
Sbjct:  1149 GTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCSKAEE--KHGVSFPQGLEYLPS 1205

Query:    61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKA--CVP-SSIQNFKYLSA 117
             KLR LHW+ YPL  LP +F P+NLVELNL  S  ++ W+G+KA  C   SS++  K +  
Sbjct:  1206 KLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMR- 1264

Query:   118 LSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRL-YLDQ---SAIEEVP 173
             LS+     L   P          I+   C +L+   Q    + +L +L+    S +E +P
Sbjct:  1265 LSYSD--QLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIP 1322

Query:   174 SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLV-DLFVNGCLNLERFPEILEKMEHLKR 232
             S ++ L  LEVL+L  C +L      F ++   V +L++ G + ++  P  ++ +  L++
Sbjct:  1323 SMVD-LESLEVLNLSGCSKLGN----FPEISPNVKELYMGGTM-IQEIPSSIKNLVLLEK 1376

Query:   233 INLDGTA-ITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP 291
             ++L+ +  +  LP+S   L  LE L +S C  L++ PD+   ++ LR +  + + I +LP
Sbjct:  1377 LDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELP 1436

Query:   292 SSVADSNAL 300
             SS++   AL
Sbjct:  1437 SSISYLTAL 1445

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 6.8e-36, P = 6.8e-36
 Identities = 129/392 (32%), Positives = 185/392 (47%)

Query:     1 GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPE 60
             GT  +EGI L+LS+I  +     AF  +SNL+LL FY   F    R  + LPNGL YLP 
Sbjct:   523 GTQLVEGISLNLSEISEVFASDRAFEGLSNLKLLNFYDLSFDGETR--VHLPNGLSYLPR 580

Query:    61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSF 120
             KLRYL WD YPL+ +PS F P+ LVEL +  S +E+ W+G        IQ  + L  +  
Sbjct:   581 KLRYLRWDGYPLKTMPSRFFPEFLVELCMSNSNLEKLWDG--------IQPLRNLKKMDL 632

Query:   121 EGCKSLRSFPSNLHFVCPVTINFSYCVTLIEF-PQISGK--ITRLYLDQSA-IEEVPSSI 176
               CK L   P          +N SYC +L+E  P I     ++  YL     ++++P  I
Sbjct:   633 SRCKYLVEVPDLSKATNLEELNLSYCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGI 692

Query:   177 ECLTDLEVLDLRDCKRLKRI-------------STRFCKLRS-------LVDLFVNGCLN 216
               L  LE + +  C  LK               ST+  +L S       LV L ++ C  
Sbjct:   693 -ILKSLETVGMSGCSSLKHFPEISWNTRRLYLSSTKIEELPSSISRLSCLVKLDMSDCQR 751

Query:   217 LERFPEILEKMEHLKRINLDGTAITE-LPSSFENLPGLEELFVSDCSKLDKLPDNIGNLE 275
             L   P  L  +  LK +NLDG    E LP + +NL  LE L VS C  +++ P    ++E
Sbjct:   752 LRTLPSYLGHLVSLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGCLNVNEFPRVSTSIE 811

Query:   276 SLRHISAAGSAISQLPSSVADSNALLILDFSRCKXXXXXXXXXXXXXXXXXXXYIMNCAV 335
              LR IS   ++I ++P+ + + + L  LD S  K                    +  C+V
Sbjct:   812 VLR-ISE--TSIEEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEKLK-LSGCSV 867

Query:   336 ME-IPQEIAY-LSSLKSLDLRGNNFESLPASI 365
             +E  P EI   +S L+  DL   + + LP +I
Sbjct:   868 LESFPLEICQTMSCLRWFDLDRTSIKELPENI 899

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 6.7e-34, Sum P(2) = 6.7e-34
 Identities = 84/247 (34%), Positives = 133/247 (53%)

Query:    49 MQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEK-ACVP- 106
             + LP+GL +  +++RYLHW  +PL+ +P +F P+NLV+L L  SK+E+ W  +K    P 
Sbjct:   596 INLPDGLNFPLKEVRYLHWLEFPLKEIPPDFNPQNLVDLKLPHSKIERIWSDDKHKDTPK 655

Query:   107 ------SSIQNFKYLSALS---------FEGCKSLRSFPSNLHFVCPVTINFSYCVTLIE 151
                   S   N   +S LS          +GC SL+S P  ++ V    +  S C  L E
Sbjct:   656 LKWVNLSHSSNLWDISGLSKAQRLVFLNLKGCTSLKSLPE-INLVSLEILILSNCSNLKE 714

Query:   152 FPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFV 211
             F  IS  +  LYLD ++I+E+P +   L  L +L+++ C +LK        L++L +L +
Sbjct:   715 FRVISQNLETLYLDGTSIKELPLNFNILQRLVILNMKGCAKLKEFPDCLDDLKALKELIL 774

Query:   212 NGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNI 271
             + C  L+ FP I E+++ L+ + LD T ITE+P     +  L+ L +S    +  LPDNI
Sbjct:   775 SDCWKLQNFPAICERIKVLEILRLDTTTITEIPM----ISSLQCLCLSKNDHISSLPDNI 830

Query:   272 GNLESLR 278
               L  L+
Sbjct:   831 SQLSQLK 837

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2146253 AT5G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
 Identities = 104/317 (32%), Positives = 147/317 (46%)

Query:     1 GTDAIEGIFLDLSKIK-CINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLP 59
             GT  I GI L +SKI+  + ++   F  M+NL+ L        E  R  + LP GL  LP
Sbjct:   586 GTGTILGIMLHVSKIEDVLVIEETVFDRMTNLQFLILD-----ECLRDKLNLPLGLNCLP 640

Query:    60 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALS 119
              K+R L WD  PL I PS F  K LVEL +R +K E+ WEG        IQ  K L  + 
Sbjct:   641 RKIRLLRWDYCPLSIWPSKFSAKFLVELIMRANKFEKLWEG--------IQPLKNLKRME 692

Query:   120 FEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQ-ISGKITRLYLDQSAIEEVPSSIEC 178
                 ++L+  P   +     ++  S+C +L+E P  I G      LD      +     C
Sbjct:   693 LGDARNLKEIPDLSNATNLESLLLSFCTSLLEIPSSIRGTTNLKELDLGGCASLVKLSSC 752

Query:   179 L---TDLEVLDLRDCKRLKRISTRF---CKLRSLVDLFVNGCLNLERFPEILEKMEHLKR 232
             +   T LE L+L  C  L  +         +RSL  L +NG   L+ FPEI   ++ L  
Sbjct:   753 ICNATSLEELNLSACSNLVELPCALPGDSNMRSLSKLLLNGSSRLKTFPEISTNIQEL-- 810

Query:   233 INLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS 292
              NL GTAI E+PSS      L++L +S C  L   P     + S+ ++S   + I  +P 
Sbjct:   811 -NLSGTAIEEVPSSIRLWSRLDKLDMSRCKNLKMFPPVPDGI-SVLNLSE--TEIEDIPP 866

Query:   293 SVADSNALLILDFSRCK 309
              V + + L      RCK
Sbjct:   867 WVENLSQLRHFVMIRCK 883

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
 Identities = 113/389 (29%), Positives = 188/389 (48%)

Query:    55 LEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKY 114
             L Y  +++R LHW  +    LPS F P+ LVELN+  S     WEG KA     ++N K+
Sbjct:   614 LNYQFQEIRLLHWINFRRLCLPSTFNPEFLVELNMPSSTCHTLWEGSKA-----LRNLKW 668

Query:   115 LSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYL----DQSAIE 170
             +  LS+    SL+  P          +   YCV+L++ P   GK+ +L +      ++I 
Sbjct:   669 MD-LSYS--ISLKELPDLSTATNLEELILKYCVSLVKVPSCVGKLGKLQVLCLHGCTSIL 725

Query:   171 EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHL 230
             E+PS  + +T L+ LDL +C  L  + +      +L +L + GCL L + P  + K  +L
Sbjct:   726 ELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQNLDL-GCLRLLKLPLSIVKFTNL 784

Query:   231 KRINLDG-TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAG-SAIS 288
             K+  L+G +++ ELP    N   L+ L + +CS L +LP +IGN  +L+++  +  S++ 
Sbjct:   785 KKFILNGCSSLVELPF-MGNATNLQNLDLGNCSSLVELPSSIGNAINLQNLDLSNCSSLV 843

Query:   289 QLPSSVADSNALLILDFSRCKXXXXXXXXXXXXXXXXXXXYIMNCA-VMEIPQEIAYLSS 347
             +LPS + ++  L ILD  +C                     +  C+ ++E+P  +  +S 
Sbjct:   844 KLPSFIGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLD-LSGCSSLVELPSSVGNISE 902

Query:   348 LKSLDLRG-NNFESLPASIKQXXXXXXXXXXXXNMLQSLPALP---LCLKYLHLTGCNML 403
             L+ L+L   +N   LP+S               + L  LP+       L+ L+L  C+ L
Sbjct:   903 LQVLNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITNLQELNLCNCSNL 962

Query:   404 RSLPE----LPLCLQELDATNCNRLQSLP 428
               LP     L L L  L    C +L++LP
Sbjct:   963 VKLPSSIGNLHL-LFTLSLARCQKLEALP 990

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 8.9e-32, P = 8.9e-32
 Identities = 102/313 (32%), Positives = 165/313 (52%)

Query:     1 GTDAIEGIFLDLSKIKCI-NLDPGAFTNMSNLRLLKFYVPKFYEIERFP--MQLPNGLEY 57
             G  ++ GI+LDL +   + N+   AF  MSNL+ L+  V  F  +  FP  + LP+ L Y
Sbjct:   571 GGRSVIGIYLDLHRNDDVFNISEKAFEGMSNLQFLR--VKNFGNL--FPAIVCLPHCLTY 626

Query:    58 LPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSA 117
             +  KLR L W  +P+   PS F P+ LVELN+  SK+E+ WE         IQ  + L  
Sbjct:   627 ISRKLRLLDWMYFPMTCFPSKFNPEFLVELNMWGSKLEKLWE--------EIQPLRNLKR 678

Query:   118 LSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLY-LDQS---AIEEVP 173
             +     K+L+  P          +N + C +L+E P   G  T+L  L+ S   ++ E+P
Sbjct:   679 MDLFSSKNLKELPDLSSATNLEVLNLNGCSSLVELPFSIGNATKLLKLELSGCSSLLELP 738

Query:   174 SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRI 233
             SSI    +L+ +D   C+ L  + +      +L +L ++ C +L+  P  +    +LK++
Sbjct:   739 SSIGNAINLQTIDFSHCENLVELPSSIGNATNLKELDLSCCSSLKELPSSIGNCTNLKKL 798

Query:   234 NLDG-TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAG-SAISQLP 291
             +L   +++ ELPSS  N   L+EL ++ CS L KLP +IGN  +L  +  AG  ++ +LP
Sbjct:   799 HLICCSSLKELPSSIGNCTNLKELHLTCCSSLIKLPSSIGNAINLEKLILAGCESLVELP 858

Query:   292 SSVADSNALLILD 304
             S +  +  L IL+
Sbjct:   859 SFIGKATNLKILN 871

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	432
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-45
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-20
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-10
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	4e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	2e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  168 bits (426), Expect = 3e-45
 Identities = 135/419 (32%), Positives = 199/419 (47%), Gaps = 79/419 (18%)

Query: 1   GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPE 60
           GT  + GI LD+ +I  +++   AF  M NL  LKFY  K+ + +     LP G +YLP 
Sbjct: 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP 589

Query: 61  KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSF 120
           KLR L WD YPLR +PSNF+P+NLV+L ++ SK+E+ W+G        + +   L  +  
Sbjct: 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG--------VHSLTGLRNIDL 641

Query: 121 EGCKSLRSFP-----SNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSS 175
            G K+L+  P     +NL      T+  S C +L+                    E+PSS
Sbjct: 642 RGSKNLKEIPDLSMATNLE-----TLKLSDCSSLV--------------------ELPSS 676

Query: 176 IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL 235
           I+ L  LE LD+  C+ L+ + T    L+SL  L ++GC  L+ FP+I   +  L   +L
Sbjct: 677 IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWL---DL 732

Query: 236 DGTAITELPSS--FENL----------------------------PGLEELFVSDCSKLD 265
           D TAI E PS+   ENL                            P L  LF+SD   L 
Sbjct: 733 DETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792

Query: 266 KLPDNIGNLESLRHISAAGSA-ISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSS 324
           +LP +I NL  L H+       +  LP+ + +  +L  LD S C  L + P  +   +S 
Sbjct: 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP-DISTNISD 850

Query: 325 LGLLYIMNCAVMEIPQEIAYLSSLKSLDLRG-NNFESLPASIKQLSRLCSLDLRRCNML 382
           L L       + E+P  I   S+L  LD+ G NN + +  +I +L  L ++D   C  L
Sbjct: 851 LNLSRT---GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 92.6 bits (230), Expect = 6e-20
 Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 42/222 (18%)

Query: 75  LPSNFKPKNLVELNLRFSKVEQPWEGEKAC------------------------VPSSIQ 110
            PSN + +NL EL L   K E+ WE  +                          +PSSIQ
Sbjct: 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799

Query: 111 NFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIE 170
           N   L  L  E C +L + P+ ++     +++ S C  L  FP IS  I+ L L ++ IE
Sbjct: 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE 859

Query: 171 EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHL 230
           EVP  IE  ++L  LD+  C  L+R+S    KL+ L  +  + C               L
Sbjct: 860 EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC-------------GAL 906

Query: 231 KRINLDGTAITELPSSFEN----LPGLEELFVSDCSKLDKLP 268
              + +G+  +E+  + +N    LP    +   +C  LD+  
Sbjct: 907 TEASWNGSP-SEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 70/255 (27%), Positives = 113/255 (44%), Gaps = 11/255 (4%)

Query: 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL 217
            +  L L+ + +    S +  LT+L  LDL D   +  I      L+S +         +
Sbjct: 94  PLPSLDLNLNRLRSNISELLELTNLTSLDL-DNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 218 ERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESL 277
           E  P  L  + +LK ++L    +++LP    NL  L  L +S  +K+  LP  I  L +L
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSAL 211

Query: 278 RHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME 337
             +  + ++I +L SS+++   L  L+ S  K         +  LS+L  L + N  +  
Sbjct: 212 EELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE--DLPESIGNLSNLETLDLSNNQISS 269

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHL 397
           I   +  L++L+ LDL GN+  +    I  L  L  L L   N+L +L AL L L  + L
Sbjct: 270 IS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL---NLLLTLKALELKLNSILL 325

Query: 398 T---GCNMLRSLPEL 409
                 N   S PE 
Sbjct: 326 NNNILSNGETSSPEA 340

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 61.3 bits (148), Expect = 5e-10
 Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 29/259 (11%)

Query: 160 TRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE 218
           T L L    +  +P+ I E +T L +LD  + K L         L+  +         L 
Sbjct: 181 TELRLKILGLTTIPACIPEQITTL-ILDNNELKSLPE------NLQGNIKTLYANSNQLT 233

Query: 219 RFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLR 278
             P  L   + ++ + L    ITELP   E LP   +      +K+  LP+N+   E LR
Sbjct: 234 SIPATLP--DTIQEMELSINRITELP---ERLPSALQSLDLFHNKISCLPENLP--EELR 286

Query: 279 HISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEI 338
           ++S   ++I  LP+ +      L     +   L +LP +L  GL     L     A+  +
Sbjct: 287 YLSVYDNSIRTLPAHLPSGITHL---NVQSNSLTALPETLPPGLK---TLEAGENALTSL 340

Query: 339 PQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA-LPLCLKYLHL 397
           P  +     L+ LD+  N    LP ++     + +LD+ R N L +LP  LP  L+ +  
Sbjct: 341 PASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSR-NALTNLPENLPAALQIMQA 395

Query: 398 TGCNMLRSLPE-LPLCLQE 415
           +  N++R LPE LP    E
Sbjct: 396 SRNNLVR-LPESLPHFRGE 413

Length = 754

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 67/205 (32%), Positives = 95/205 (46%), Gaps = 28/205 (13%)

Query: 230 LKRINLDGTAITELPSSFENLPGLEEL--FVSDCSKLDKLPDNIGNLESLRHISAAGSAI 287
           L+ + + G  +T LP      PGL EL  F +  + L  LP  +  L         G+ +
Sbjct: 244 LRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIF------GNQL 294

Query: 288 SQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSS 347
           + LP        L + D ++   L +LP       S L  L+  N  +  +P      S 
Sbjct: 295 TSLPVLPPGLQELSVSD-NQLASLPALP-------SELCKLWAYNNQLTSLP---TLPSG 343

Query: 348 LKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLP 407
           L+ L +  N   SLP    +L +L + +    N L SLPALP  LK L ++G N L SLP
Sbjct: 344 LQELSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKELIVSG-NRLTSLP 398

Query: 408 ELPLCLQELDATNCNRLQSLPEIPS 432
            LP  L+EL  +  NRL SLP +PS
Sbjct: 399 VLPSELKELMVSG-NRLTSLPMLPS 422

Length = 788

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 60/244 (24%)

Query: 230 LKRINLDGTAITELPSSF--ENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS-- 285
           L+ +  D   +  +PS+F  ENL  L+       SKL+KL D + +L  LR+I   GS  
Sbjct: 591 LRLLRWDKYPLRCMPSNFRPENLVKLQ----MQGSKLEKLWDGVHSLTGLRNIDLRGSKN 646

Query: 286 ----------------------AISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLS 323
                                 ++ +LPSS+   N L  LD SRC+ L  LP  +   L 
Sbjct: 647 LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK 704

Query: 324 SLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLD-LRRCNML 382
           SL  L +  C+ ++   +I+  +++  LDL     E  P+++    RL +LD L  C M 
Sbjct: 705 SLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIEEFPSNL----RLENLDELILCEMK 758

Query: 383 QS------------LPALPLCLKYLHLTGCNMLRSLPELPLCLQ------ELDATNCNRL 424
                         +  L   L  L L+    + SL ELP  +Q       L+  NC  L
Sbjct: 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSD---IPSLVELPSSIQNLHKLEHLEIENCINL 815

Query: 425 QSLP 428
           ++LP
Sbjct: 816 ETLP 819

syringae 6; Provisional. Length = 1153

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 20/160 (12%)

Query: 285 SAISQLPSSVADSNALLILDFSRCKGLVSLP---RSLLLGLSSLGLLYIMNCAVMEIP-- 339
           S ++ LP  +      L++  +    L +LP   R+L +  + L  L ++   ++E+   
Sbjct: 211 SGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIF 270

Query: 340 -QEIAYLSSLKS----LDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALP--LCL 392
              + +L +L S    L + GN   SLP     L  L   D    N L SLPALP  LC 
Sbjct: 271 SNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD----NQLASLPALPSELCK 326

Query: 393 KYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS 432
            + +    N L SLP LP  LQEL  ++ N+L SLP +PS
Sbjct: 327 LWAY---NNQLTSLPTLPSGLQELSVSD-NQLASLPTLPS 362

Length = 788

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 31/192 (16%)

Query: 243 LPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLI 302
           LP  F+ LP    L   D   L  +P N    E+L  +   GS + +L   V     L  
Sbjct: 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRN 638

Query: 303 LDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCA-VMEIPQEIAYLSSLKSLDLRG-NNFES 360
           +D    K L  +P   L   ++L  L + +C+ ++E+P  I YL+ L+ LD+    N E 
Sbjct: 639 IDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI 696

Query: 361 LPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATN 420
           LP  I                L+SL  L       +L+GC+ L+S P++   +  LD   
Sbjct: 697 LPTGIN---------------LKSLYRL-------NLSGCSRLKSFPDISTNISWLDLDE 734

Query: 421 CNRLQSLPEIPS 432
                ++ E PS
Sbjct: 735 ----TAIEEFPS 742

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 230 LKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS 288
           L+ +NL     T  +P     +P LE L +S+     ++P++IG+  SL+ +   G+ + 
Sbjct: 120 LRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 289 -QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYI-MNCAVMEIPQEIAYLS 346
            ++P+S+ +  +L  L  +  + +  +PR L   + SL  +Y+  N    EIP EI  L+
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 347 SLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLK---YLHLTGCNM 402
           SL  LDL  NN    +P+S+  L  L  L L +  +   +P     L+    L L+  ++
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 403 LRSLPELPLCLQELD 417
              +PEL + LQ L+
Sbjct: 297 SGEIPELVIQLQNLE 311

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 11/218 (5%)

Query: 171 EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDL--FVNGCLNLE-RFPEILEKM 227
           E+P ++    +L VLDL        I    C   +L  L  F N   +LE   P+ L   
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN---SLEGEIPKSLGAC 403

Query: 228 EHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSA 286
             L+R+ L   + + ELPS F  LP +  L +S+ +   ++     ++ SL+ +S A + 
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 287 IS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYL 345
               LP S      L  LD SR +   ++PR L      + L    N    EIP E++  
Sbjct: 464 FFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522

Query: 346 SSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNML 382
             L SLDL  N     +PAS  ++  L  LDL   N L
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL-SQNQL 559

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 220 FPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLR 278
            P  + K+ HL+ INL G +I   +P S  ++  LE L +S  S    +P+++G L SLR
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 279 HISAAGSAIS-QLPSSV 294
            ++  G+++S ++P+++
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 214 CLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGN 273
              L   P  L ++  L  ++  G +  +   +  NL  L  L   + ++L      +  
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSL-DLNLNRLRSNISELLE 114

Query: 274 LESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC 333
           L +L  +    + I+ +P  +    + L         + SLP  L   L +L  L +   
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN-LPNLKNLDLSFN 173

Query: 334 AVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLK 393
            + ++P+ ++ LS+L +LDL GN    LP  I+ LS L  LDL   ++++ L +L     
Sbjct: 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKN 233

Query: 394 YLHLTGCNM----LRSLPELPLCLQELDATNCNRLQSLPEIPS 432
              L   N     L         L+ LD +N N++ S+  + S
Sbjct: 234 LSGLELSNNKLEDLPESIGNLSNLETLDLSN-NQISSISSLGS 275

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 26/161 (16%)

Query: 229 HLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAI 287
            +  I+L G  I+ ++ S+   LP ++ + +S+      +PD+I                
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT------------- 116

Query: 288 SQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSS 347
                    S++L  L+ S      S+PR  +  L +L L    N    EIP +I   SS
Sbjct: 117 ---------SSSLRYLNLSNNNFTGSIPRGSIPNLETLDL--SNNMLSGEIPNDIGSFSS 165

Query: 348 LKSLDLRGNNFES-LPASIKQLSRLCSLDLRRCNMLQSLPA 387
           LK LDL GN     +P S+  L+ L  L L    ++  +P 
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 27/220 (12%)

Query: 171 EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHL 230
           E+P+ I   + L+VLDL     + +I      L SL  L +     + + P  L +M+ L
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 231 KRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-Q 289
           K I L           + NL G             ++P  IG L SL H+    + ++  
Sbjct: 215 KWIYL----------GYNNLSG-------------EIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 290 LPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSL-GLLYIMNCAVMEIPQEIAYLSSL 348
           +PSS+ +   L  L   + K    +P S+   L  L  L    N    EIP+ +  L +L
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNL 310

Query: 349 KSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPA 387
           + L L  NNF   +P ++  L RL  L L        +P 
Sbjct: 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 11/125 (8%)

Query: 310 GLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLS 369
           GL ++P  +   +++L L    N  +  +P+ +    ++K+L    N   S+PA++    
Sbjct: 189 GLTTIPACIPEQITTLIL---DNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTI 243

Query: 370 RLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPE-LPLCLQELDATNCNRLQSLP 428
           +   ++L    + +    LP  L+ L L   N +  LPE LP  L+ L   + N +++LP
Sbjct: 244 QE--MELSINRITELPERLPSALQSLDLF-HNKISCLPENLPEELRYLSVYD-NSIRTLP 299

Query: 429 E-IPS 432
             +PS
Sbjct: 300 AHLPS 304

Length = 754

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.31
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.92
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.92
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
KOG4341	483	consensus F-box protein containing LRR [General fu	98.88
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.85
KOG4341	483	consensus F-box protein containing LRR [General fu	98.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.7
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.5
PLN03150	623	hypothetical protein; Provisional	98.47
PLN03150	623	hypothetical protein; Provisional	98.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.26
PRK15386	426	type III secretion protein GogB; Provisional	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.17
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.17
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.15
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
PRK15386	426	type III secretion protein GogB; Provisional	98.07
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.92
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.8
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.68
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.55
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.2
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.51
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.91
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.77
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.54
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.96
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.29
KOG4308	478	consensus LRR-containing protein [Function unknown	93.38
KOG4308	478	consensus LRR-containing protein [Function unknown	92.37
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.23
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.33
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.86
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.88
smart00370	26	LRR Leucine-rich repeats, outliers.	89.88
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.18
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.31

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.2e-39  Score=338.59  Aligned_cols=381  Identities=21%  Similarity=0.292  Sum_probs=278.2

Q ss_pred             eeEeeccCCceecccCchhhcccccceeeeeccccccccccccccCCcccc-chhhhcceeecCCCCCCCCCCCCCCCCc
Q 042875            6 EGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLE-YLPEKLRYLHWDTYPLRILPSNFKPKNL   84 (432)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~-~l~~~L~~L~l~~~~~~~l~~~~~~~~L   84 (432)
                      +-+.+|++++.+....+..|..+++|+.|++++|++.+      .+|..+. .+. +|++|++++|.+........+++|
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~------~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L  142 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG------PIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNL  142 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC------cCChHHhccCC-CCCEEECcCCccccccCccccCCC
Confidence            34567788887777778899999999999999999986      6787765 664 999999999987643334567889


Q ss_pred             eeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCC---CCCCcc
Q 042875           85 VELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQ---ISGKIT  160 (432)
Q Consensus        85 ~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~  160 (432)
                      ++|++++|.++    +.   +|..++.+++|++|++++|...+.+| .+.++++|++|++++|.+...+|.   .+.+|+
T Consensus       143 ~~L~Ls~n~~~----~~---~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        143 ETLDLSNNMLS----GE---IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             CEEECcCCccc----cc---CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            99999999886    33   67778889999999999888777777 456688899999988887776664   345778


Q ss_pred             EEEecccccc-cccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875          161 RLYLDQSAIE-EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA  239 (432)
Q Consensus       161 ~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  239 (432)
                      .|++.+|.+. .+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            8888888775 577788888888888888888777788888888888888888887777778788888888888888888


Q ss_pred             cc-ccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchh
Q 042875          240 IT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRS  317 (432)
Q Consensus       240 ~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  317 (432)
                      +. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|...+..+..
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            77 56667777888888888888777777777777888888888888776 56667777777888888777765555543


Q ss_pred             hhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccCC---CCCCc
Q 042875          318 LLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPA---LPLCL  392 (432)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~L  392 (432)
                       +..+++|+.|++++|.+.. +|..+..+++|+.|++++|.++ .+|..+..++.|+.+++++|.+.+.++.   .+++|
T Consensus       376 -~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  454 (968)
T PLN00113        376 -LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL  454 (968)
T ss_pred             -HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence             2244556666666655554 5555555555666666555555 4455555555555555555554444332   22344


Q ss_pred             cEEeccCCC
Q 042875          393 KYLHLTGCN  401 (432)
Q Consensus       393 ~~L~l~~c~  401 (432)
                      +.|++.+|.
T Consensus       455 ~~L~L~~n~  463 (968)
T PLN00113        455 QMLSLARNK  463 (968)
T ss_pred             cEEECcCce
Confidence            444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.3e-39  Score=336.43  Aligned_cols=405  Identities=22%  Similarity=0.285  Sum_probs=281.1

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCC-CCCCCC-CCCCcee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLR-ILPSNF-KPKNLVE   86 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~-~l~~~~-~~~~L~~   86 (432)
                      .+|+++|.+....+..+..+++|++|++++|.+.+      .+|..+..++ +|++|++++|.+. .+|..+ ++++|++
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG------KIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             EEECcCCcccccCChHHhcCCCCCEEECccCcccc------cCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            36677887766677788888899999998888876      6777777885 8888888888764 455544 7788888


Q ss_pred             eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCC---CCCccEE
Q 042875           87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQI---SGKITRL  162 (432)
Q Consensus        87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L  162 (432)
                      |++++|.++.    .   +|..++++++|++|++++|...+.+| .+..+++|++|++++|.+....|..   +.+|+.|
T Consensus       217 L~L~~n~l~~----~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  289 (968)
T PLN00113        217 IYLGYNNLSG----E---IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL  289 (968)
T ss_pred             EECcCCccCC----c---CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence            8888887763    3   66667777778888887777666666 4555777777777777666555543   3456667


Q ss_pred             Eecccccc-cccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875          163 YLDQSAIE-EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT  241 (432)
Q Consensus       163 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  241 (432)
                      ++++|.+. .+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++++|.++
T Consensus       290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~  369 (968)
T PLN00113        290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT  369 (968)
T ss_pred             ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence            77766654 45555666666666666666666556666666666666666666655556666666666666666665554


Q ss_pred             -ccCcc------------------------cCCCCCccEEeecCCCCCCccccccCCccccccccccccccc-ccCcccc
Q 042875          242 -ELPSS------------------------FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVA  295 (432)
Q Consensus       242 -~~~~~------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~  295 (432)
                       .+|..                        +..+++|+.|++++|.+.+..|..+..++.|+.+++++|.+. ..+..+.
T Consensus       370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  449 (968)
T PLN00113        370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW  449 (968)
T ss_pred             eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence             33333                        444555555555555555555555555555555555555554 3334444


Q ss_pred             CCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCe
Q 042875          296 DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCS  373 (432)
Q Consensus       296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~  373 (432)
                      .+++|+.|++++|.+.+..+..  ...++|+.|++++|++.. +|..+..+++|+.|++++|.+. .+|..+..+++|++
T Consensus       450 ~l~~L~~L~L~~n~~~~~~p~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  527 (968)
T PLN00113        450 DMPSLQMLSLARNKFFGGLPDS--FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS  527 (968)
T ss_pred             cCCCCcEEECcCceeeeecCcc--cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCE
Confidence            5566666666666655544442  134678888888888876 7777888999999999999888 78888889999999


Q ss_pred             eeccCCCCCcccCCC---CCCccEEeccCCCCccccCC---CCCccceeccccccccccCCC
Q 042875          374 LDLRRCNMLQSLPAL---PLCLKYLHLTGCNMLRSLPE---LPLCLQELDATNCNRLQSLPE  429 (432)
Q Consensus       374 L~l~~~~~~~~~~~~---~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~lp~  429 (432)
                      |++++|.+.+.+|..   +++|+.|++++|.....+|.   ....|+.|++++|+....+|+
T Consensus       528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            999999988888743   46899999999877667776   456799999999876666664

>PLN03210 Resistant to P

Probab=99.97  E-value=2.5e-30  Score=270.95  Aligned_cols=368  Identities=34%  Similarity=0.583  Sum_probs=247.4

Q ss_pred             CcccceeEeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCC
Q 042875            1 GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFK   80 (432)
Q Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~   80 (432)
                      |+..+++|++|++......+.+.+|.+|++|+.|.+..+...........+|..+..+|.+|+.|.+.++.++.+|..+.
T Consensus       530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~  609 (1153)
T PLN03210        530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFR  609 (1153)
T ss_pred             ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCC
Confidence            56778999999999888888889999999999999976643211112236788888888789999999999999999999


Q ss_pred             CCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCcc
Q 042875           81 PKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKIT  160 (432)
Q Consensus        81 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~  160 (432)
                      +.+|++|++.++.+..+        +..+..+++|+.|+++++.....+|.+..+++|+.|++++|.....+        
T Consensus       610 ~~~L~~L~L~~s~l~~L--------~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~l--------  673 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKL--------WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL--------  673 (1153)
T ss_pred             ccCCcEEECcCcccccc--------ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcccc--------
Confidence            99999999999998864        44458899999999999888888888888999999999998766444        


Q ss_pred             EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccc
Q 042875          161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI  240 (432)
Q Consensus       161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  240 (432)
                                  |..+.++++|+.|++++|...+.+|..+ ++++|+.|.+++|.....+|..   ..+|++|+++++.+
T Consensus       674 ------------p~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i  737 (1153)
T PLN03210        674 ------------PSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI  737 (1153)
T ss_pred             ------------chhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence                        4445555666666666665555555433 4566666666666544444422   34566666666666


Q ss_pred             cccCcccCCCCCccEEeecCCCCCC-------ccccccCCcccccccccccccc-cccCccccCCCCCcEEeccCCCCCC
Q 042875          241 TELPSSFENLPGLEELFVSDCSKLD-------KLPDNIGNLESLRHISAAGSAI-SQLPSSVADSNALLILDFSRCKGLV  312 (432)
Q Consensus       241 ~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~  312 (432)
                      ..+|..+ .+++|+.|.+.++....       ..+......++|+.|++++|.. ..+|..++++++|+.|++++|....
T Consensus       738 ~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~  816 (1153)
T PLN03210        738 EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE  816 (1153)
T ss_pred             ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence            6555433 34556655555432110       0011112235666666666643 3566666666777777776666555


Q ss_pred             CCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC---C
Q 042875          313 SLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA---L  388 (432)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~---~  388 (432)
                      .+|...  .+++|+.|++++|.... +|.   ..++|+.|++++|.++.+|.++..+++|+.|++++|+.++.+|.   .
T Consensus       817 ~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~  891 (1153)
T PLN03210        817 TLPTGI--NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK  891 (1153)
T ss_pred             eeCCCC--CccccCEEECCCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence            555432  45667777777664333 332   13466777777777777776677777777777777666666653   2


Q ss_pred             CCCccEEeccCCCCcccc
Q 042875          389 PLCLKYLHLTGCNMLRSL  406 (432)
Q Consensus       389 ~~~L~~L~l~~c~~l~~l  406 (432)
                      +.+|+.+++.+|..++.+
T Consensus       892 L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        892 LKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             ccCCCeeecCCCcccccc
Confidence            345666677777666544

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=6.4e-32  Score=244.30  Aligned_cols=377  Identities=21%  Similarity=0.198  Sum_probs=297.2

Q ss_pred             EeeccCCceecccCchhhccc--ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCc
Q 042875            8 IFLDLSKIKCINLDPGAFTNM--SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNL   84 (432)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L   84 (432)
                      .-+|.+++.+..++-..+...  +.-+.||+++|++.++      -+..+..+| +|+.+++.+|.++.+|... ...+|
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~i------d~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl  127 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHI------DFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHL  127 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccC------cHHHHhcCC-cceeeeeccchhhhcccccccccce
Confidence            346777776655544444332  3445699999999863      344567787 9999999999999999888 44569


Q ss_pred             eeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC--CCCCCCCceEEEecCcccccccCC---CCCCc
Q 042875           85 VELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVTLIEFPQ---ISGKI  159 (432)
Q Consensus        85 ~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L  159 (432)
                      +.|+|.+|.|+.+.       .+.++-++.|++|+++.|.+ ++++  .+-.-.++++|++++|++++--..   .+.+|
T Consensus       128 ~~L~L~~N~I~sv~-------se~L~~l~alrslDLSrN~i-s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL  199 (873)
T KOG4194|consen  128 EKLDLRHNLISSVT-------SEELSALPALRSLDLSRNLI-SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL  199 (873)
T ss_pred             eEEeeecccccccc-------HHHHHhHhhhhhhhhhhchh-hcccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence            99999999988653       23477888999999998654 4444  556668899999999988754333   44578


Q ss_pred             cEEEecccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875          160 TRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT  238 (432)
Q Consensus       160 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  238 (432)
                      ..|.++.|+++.+|. .|.++++|+.|++..|++...-...|.++++|+.|.+..|.+..--...|-.+.++++|+++.|
T Consensus       200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N  279 (873)
T KOG4194|consen  200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN  279 (873)
T ss_pred             eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence            889999999999986 6677999999999998865554567899999999999998877666667778999999999999


Q ss_pred             ccccc-CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCch
Q 042875          239 AITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPR  316 (432)
Q Consensus       239 ~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~  316 (432)
                      +++.. ..++..+++|+.|+++.|.+...-+..|..+++|++|+++.|++..++ ..+..+..|+.|.++.|. ++.+..
T Consensus       280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e  358 (873)
T KOG4194|consen  280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE  358 (873)
T ss_pred             hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh
Confidence            99954 456788999999999999888777788889999999999999999665 457778899999999987 344555


Q ss_pred             hhhcCCCCccEEEeeccCCCC----CchhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccCCCCCcccCCCC--
Q 042875          317 SLLLGLSSLGLLYIMNCAVME----IPQEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNMLQSLPALP--  389 (432)
Q Consensus       317 ~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~--  389 (432)
                      ..|.++++|++|++..|.+..    -...+..+++|+.|.+.||++..+| ..+.++..|++|+|.+|.+.+.-+..+  
T Consensus       359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP  438 (873)
T ss_pred             hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence            556688999999999998776    3445677999999999999999887 467899999999999999766555433  


Q ss_pred             CCccEEeccCC
Q 042875          390 LCLKYLHLTGC  400 (432)
Q Consensus       390 ~~L~~L~l~~c  400 (432)
                      ..|++|.+..-
T Consensus       439 m~Lk~Lv~nSs  449 (873)
T KOG4194|consen  439 MELKELVMNSS  449 (873)
T ss_pred             chhhhhhhccc
Confidence            25777665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=2.5e-30  Score=234.09  Aligned_cols=379  Identities=20%  Similarity=0.179  Sum_probs=292.5

Q ss_pred             ccccce-eeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC--CCCCCceeeeeccccccccCCCccc
Q 042875           27 NMSNLR-LLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN--FKPKNLVELNLRFSKVEQPWEGEKA  103 (432)
Q Consensus        27 ~l~~L~-~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~l~~~~~~~~~  103 (432)
                      .|+... .||.++..+..++     -..--+.+|..-+.|++++|.+..+...  .++++|+++++..|.++.       
T Consensus        49 ~c~c~~~lldcs~~~lea~~-----~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-------  116 (873)
T KOG4194|consen   49 TCPCNTRLLDCSDRELEAID-----KSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-------  116 (873)
T ss_pred             cCCCCceeeecCcccccccc-----ccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-------
Confidence            344443 4777777665321     1111234555788899999998766555  399999999999999986       


Q ss_pred             ccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCCC---CCccEEEecccccccccc-cccC
Q 042875          104 CVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQIS---GKITRLYLDQSAIEEVPS-SIEC  178 (432)
Q Consensus       104 ~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~-~~~~  178 (432)
                       ||.......+++.|++.+|.+.+.-. .+..++.|+.||++.|.+..--...+   .++++|++..|.++.+.. .|..
T Consensus       117 -IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~  195 (873)
T KOG4194|consen  117 -IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS  195 (873)
T ss_pred             -cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc
Confidence             67666777889999999976554322 55668999999999997763222222   379999999999987654 7788


Q ss_pred             CCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCc-ccCCCCCccEEe
Q 042875          179 LTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELF  257 (432)
Q Consensus       179 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~  257 (432)
                      +.+|..|.++.|++...-+..|.++++|+.|++..|.+...-.-.|..+++|+.+.+..|.+..+.+ .|..+.++++|+
T Consensus       196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~  275 (873)
T KOG4194|consen  196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN  275 (873)
T ss_pred             cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence            8899999999998877666778889999999999987665544578889999999999999986544 467788999999


Q ss_pred             ecCCCCCCccccccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCC
Q 042875          258 VSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVM  336 (432)
Q Consensus       258 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (432)
                      ++.|.....--.++.++..|+.|++++|.|. -.+..++.+++|+.|+++.|. +..++...+..++.|++|.++.|.+.
T Consensus       276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchH
Confidence            9999887777778889999999999999998 445778889999999999988 45566666778899999999999998


Q ss_pred             CCch-hhhcCCCCCEEEeeCCCCc-cc---ChhccCCCCCCeeeccCCCCCcccC----CCCCCccEEeccCCCCccccC
Q 042875          337 EIPQ-EIAYLSSLKSLDLRGNNFE-SL---PASIKQLSRLCSLDLRRCNMLQSLP----ALPLCLKYLHLTGCNMLRSLP  407 (432)
Q Consensus       337 ~~~~-~~~~~~~L~~L~l~~n~l~-~l---~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~c~~l~~l~  407 (432)
                      .+.. .+..+.+|++|+|+.|.++ .+   ...+..+++|+.|.+.+|+ ++.+|    ..+..||.|++.+|+-.+.-+
T Consensus       355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcceeecc
Confidence            8543 4677899999999999887 22   2455779999999999988 46666    345789999999976443222


Q ss_pred             --CCCCccceecccc
Q 042875          408 --ELPLCLQELDATN  420 (432)
Q Consensus       408 --~~~~~L~~L~l~~  420 (432)
                        +....|++|-+..
T Consensus       434 nAFe~m~Lk~Lv~nS  448 (873)
T KOG4194|consen  434 NAFEPMELKELVMNS  448 (873)
T ss_pred             cccccchhhhhhhcc
Confidence              2333566665543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=9.5e-31  Score=238.80  Aligned_cols=361  Identities=22%  Similarity=0.255  Sum_probs=266.4

Q ss_pred             eccCCcee-cccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceee
Q 042875           10 LDLSKIKC-INLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVEL   87 (432)
Q Consensus        10 l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L   87 (432)
                      +|+++|.- ++.-|.+...|++++.|.|...++.       .+|+.++.+. +|++|.+++|.+.++.... .++.||.+
T Consensus        12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-------~vPeEL~~lq-kLEHLs~~HN~L~~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-------QVPEELSRLQ-KLEHLSMAHNQLISVHGELSDLPRLRSV   83 (1255)
T ss_pred             ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-------hChHHHHHHh-hhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence            56777763 3556677888888888888777776       6788888885 8888888888876665544 78888888


Q ss_pred             eeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCC----CCCccEE
Q 042875           88 NLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQI----SGKITRL  162 (432)
Q Consensus        88 ~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L  162 (432)
                      .+..|++..   ..   ||..+.++..|..|++++|+.. +.| .+...+++-.|++++|.+. .+|..    +..|-.|
T Consensus        84 ~~R~N~LKn---sG---iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   84 IVRDNNLKN---SG---IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hhhcccccc---CC---CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence            888888775   34   8888888888888998886654 444 5666778888888888655 34432    2345567


Q ss_pred             EecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCc-ccchHhhhcCCCCCeeeecccccc
Q 042875          163 YLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL-ERFPEILEKMEHLKRINLDGTAIT  241 (432)
Q Consensus       163 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~  241 (432)
                      ++++|++..+|+.+..+.+|++|++++|.+...-...+.++.+|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+.
T Consensus       156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence            8888888888888888888888888888664332233445667777777775433 457788888888888888888888


Q ss_pred             ccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcC
Q 042875          242 ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLG  321 (432)
Q Consensus       242 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  321 (432)
                      .+|..+.++++|+.|.+++|.+.. +........+|++|+++.|.+..+|..+..+++|+.|.+.+|++.-....+.++.
T Consensus       236 ~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK  314 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK  314 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence            888888888888888888876543 3333455678888888888888888888888888888887777544333333456


Q ss_pred             CCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC
Q 042875          322 LSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA  387 (432)
Q Consensus       322 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~  387 (432)
                      +..|+++..++|.+.-+|..+..|+.|+.|.++.|++..+|+.|.-++.|+.|++..|+.+...|+
T Consensus       315 L~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  315 LIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             hhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            677777777777777778778888888888888888877888877788888888888777665553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=8.5e-31  Score=239.14  Aligned_cols=362  Identities=22%  Similarity=0.307  Sum_probs=304.0

Q ss_pred             cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeeeeccccccccCCCcccccC
Q 042875           28 MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQPWEGEKACVP  106 (432)
Q Consensus        28 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~  106 (432)
                      +|-.|-.|+++|.+.|     ..+|..+..+. +++.|.|....+..+|... .+.+|++|++++|++..+        -
T Consensus         6 LpFVrGvDfsgNDFsg-----~~FP~~v~qMt-~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~v--------h   71 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSG-----DRFPHDVEQMT-QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISV--------H   71 (1255)
T ss_pred             cceeecccccCCcCCC-----CcCchhHHHhh-heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhh--------h
Confidence            5678889999999986     28899999996 9999999999999999876 889999999999998763        3


Q ss_pred             CcccCcccCceEeccCCccCCc-CC-CCCCCCCceEEEecCcccccccCCCCC---CccEEEeccccccccccc-ccCCC
Q 042875          107 SSIQNFKYLSALSFEGCKSLRS-FP-SNLHFVCPVTINFSYCVTLIEFPQISG---KITRLYLDQSAIEEVPSS-IECLT  180 (432)
Q Consensus       107 ~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~-~~~~~  180 (432)
                      ..++.++.|+.+.++.|+.... +| .+.++..|..|++++|... +.|..+.   ++-.|++++|.+.++|.. +.+++
T Consensus        72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt  150 (1255)
T KOG0444|consen   72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT  150 (1255)
T ss_pred             hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence            3478999999999999876543 66 7889999999999998654 6776554   567899999999999974 56888


Q ss_pred             CCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc--ccCcccCCCCCccEEee
Q 042875          181 DLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT--ELPSSFENLPGLEELFV  258 (432)
Q Consensus       181 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l  258 (432)
                      .|-.|++++|+ .+.+|+.+..+..|+.|.+++|.+.-.--..+..+++|+.|.+++.+-+  .+|..+..+.+|..+++
T Consensus       151 DLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl  229 (1255)
T KOG0444|consen  151 DLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL  229 (1255)
T ss_pred             hHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence            99999999986 4667888999999999999998765443344556788888999987766  78888899999999999


Q ss_pred             cCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-
Q 042875          259 SDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-  337 (432)
Q Consensus       259 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-  337 (432)
                      +.|+. ..+|..+..+++|+.|++++|.++.+....+.+.+++.|+++.|+ .+.+|.. ...+++|+.|.+.+|+++- 
T Consensus       230 S~N~L-p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a-vcKL~kL~kLy~n~NkL~Fe  306 (1255)
T KOG0444|consen  230 SENNL-PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDA-VCKLTKLTKLYANNNKLTFE  306 (1255)
T ss_pred             cccCC-CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHH-HhhhHHHHHHHhccCccccc
Confidence            98754 557888889999999999999999888888888999999999988 4556664 3478899999999997654 


Q ss_pred             -CchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC--CCCCccEEeccCCCCccccCC
Q 042875          338 -IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA--LPLCLKYLHLTGCNMLRSLPE  408 (432)
Q Consensus       338 -~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~  408 (432)
                       +|..++.+..|+.+..++|.+.-+|+++..|..|+.|.|++|++++-...  ..+.|+.||+.+|+++.--|.
T Consensus       307 GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  307 GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence             99999999999999999999999999999999999999999997654332  447899999999999876654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=3.7e-30  Score=223.10  Aligned_cols=389  Identities=22%  Similarity=0.296  Sum_probs=276.0

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELN   88 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~   88 (432)
                      +++.+|..... |.+++.+..++.++.++|++.       .+|+.+...+ +++.++++.+.+..+++.+ .+..+..++
T Consensus        73 l~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls-------~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~  143 (565)
T KOG0472|consen   73 LNVHDNKLSQL-PAAIGELEALKSLNVSHNKLS-------ELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLD  143 (565)
T ss_pred             EEeccchhhhC-CHHHHHHHHHHHhhcccchHh-------hccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhh
Confidence            45556644444 356666667777777777765       5677777775 7777777777776666655 777777777


Q ss_pred             eccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCC---CccEEEec
Q 042875           89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISG---KITRLYLD  165 (432)
Q Consensus        89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~  165 (432)
                      -.+|+++.        +|+.+.++.++..+++.++......+....++.|++|+...|-. ..+|..++   ++..|++.
T Consensus       144 ~~~N~i~s--------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~  214 (565)
T KOG0472|consen  144 ATNNQISS--------LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLR  214 (565)
T ss_pred             cccccccc--------CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhh
Confidence            77777765        67777888888888888876665555666688889998887644 46676555   45556788


Q ss_pred             ccccccccccccCCCCCCEEeeccccccccccch-hcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC
Q 042875          166 QSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP  244 (432)
Q Consensus       166 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  244 (432)
                      .|++..+| .|+.|..|+++.++.|++ +.+|.. ...++++..|++..|.+ ...|..++.+++|++|++++|.++.+|
T Consensus       215 ~Nki~~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~Lp  291 (565)
T KOG0472|consen  215 RNKIRFLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDISSLP  291 (565)
T ss_pred             hcccccCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCccccCC
Confidence            88888888 788888999999888754 444544 45788999999998654 677888899999999999999999999


Q ss_pred             cccCCCCCccEEeecCCCCCC-------------------------------------cccc----ccCCcccccccccc
Q 042875          245 SSFENLPGLEELFVSDCSKLD-------------------------------------KLPD----NIGNLESLRHISAA  283 (432)
Q Consensus       245 ~~~~~l~~L~~L~l~~~~~~~-------------------------------------~~~~----~~~~l~~L~~L~l~  283 (432)
                      ..++++ +|+.|-+.+|++..                                     +.+.    ....+.+.+.|+++
T Consensus       292 ~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s  370 (565)
T KOG0472|consen  292 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS  370 (565)
T ss_pred             cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence            999999 89999988876421                                     0000    11234566677777


Q ss_pred             cccccccCccccCCCC---CcEEeccCCCCCC----------------------CCchhhhcCCCCccEEEeeccCCCCC
Q 042875          284 GSAISQLPSSVADSNA---LLILDFSRCKGLV----------------------SLPRSLLLGLSSLGLLYIMNCAVMEI  338 (432)
Q Consensus       284 ~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~  338 (432)
                      +-.++.+|..+.....   ....+++.|+...                      .++....+.+++|..|++++|...++
T Consensus       371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L  450 (565)
T KOG0472|consen  371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL  450 (565)
T ss_pred             ccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc
Confidence            7666666654433322   4555555554211                      12223345678888889988888888


Q ss_pred             chhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC----CCCCccEEeccCCCCccccCC---CCC
Q 042875          339 PQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCNMLRSLPE---LPL  411 (432)
Q Consensus       339 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~---~~~  411 (432)
                      |..++.+..|+.|+++.|++..+|.++.....++.+-.++|+ ++.++.    .+..|..||+.+| .+..+|.   .+.
T Consensus       451 P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~Lgnmt  528 (565)
T KOG0472|consen  451 PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ-IGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMT  528 (565)
T ss_pred             chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc-ccccChHHhhhhhhcceeccCCC-chhhCChhhcccc
Confidence            888888888999999998888888877666666665555444 454542    3567889998884 5666776   677


Q ss_pred             ccceecccccc
Q 042875          412 CLQELDATNCN  422 (432)
Q Consensus       412 ~L~~L~l~~c~  422 (432)
                      +|++|++.+.|
T Consensus       529 nL~hLeL~gNp  539 (565)
T KOG0472|consen  529 NLRHLELDGNP  539 (565)
T ss_pred             ceeEEEecCCc
Confidence            88899998843

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.93  E-value=1.9e-28  Score=212.47  Aligned_cols=318  Identities=21%  Similarity=0.279  Sum_probs=171.9

Q ss_pred             CCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcC
Q 042875           51 LPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSF  129 (432)
Q Consensus        51 ~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  129 (432)
                      +|.+++.+. ++..+++.++.++.+|... +++.|++||...|-++.        +|+.++.+.+|+.|++..|+. ..+
T Consensus       152 lp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~t--------lP~~lg~l~~L~~LyL~~Nki-~~l  221 (565)
T KOG0472|consen  152 LPEDMVNLS-KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLET--------LPPELGGLESLELLYLRRNKI-RFL  221 (565)
T ss_pred             CchHHHHHH-HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhc--------CChhhcchhhhHHHHhhhccc-ccC
Confidence            344444442 4444444444444333332 44455555555554432        666677777777777766433 345


Q ss_pred             CCCCCCCCceEEEecCccccc---ccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCc
Q 042875          130 PSNLHFVCPVTINFSYCVTLI---EFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSL  206 (432)
Q Consensus       130 ~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  206 (432)
                      |.+.+|..|+++.++.|.+..   +.-..+.++..|++.+|++.++|..+--+++|++||+++|.+ ..+|..++++ +|
T Consensus       222 Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL  299 (565)
T KOG0472|consen  222 PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HL  299 (565)
T ss_pred             CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-ee
Confidence            566666666666665554331   111234455556666666666666555556666666666543 3344445555 55


Q ss_pred             cEEEecCccCccc-------------------------------------ch----HhhhcCCCCCeeeeccccccccCc
Q 042875          207 VDLFVNGCLNLER-------------------------------------FP----EILEKMEHLKRINLDGTAITELPS  245 (432)
Q Consensus       207 ~~L~l~~~~~~~~-------------------------------------~~----~~l~~l~~L~~L~l~~~~~~~~~~  245 (432)
                      +.|-+.||.+.+.                                     .+    .....+.+.+.|+++.-+++.+|.
T Consensus       300 ~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPd  379 (565)
T KOG0472|consen  300 KFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPD  379 (565)
T ss_pred             eehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCH
Confidence            5555555421100                                     00    000112234444444444444433


Q ss_pred             ccCCCC---CccEEeecCC-----------------------CCCCccccccCCcccccccccccccccccCccccCCCC
Q 042875          246 SFENLP---GLEELFVSDC-----------------------SKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNA  299 (432)
Q Consensus       246 ~~~~l~---~L~~L~l~~~-----------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  299 (432)
                      .+..--   -.+..++++|                       +..+..|..+..+++|..|++++|-+..+|..++.+-.
T Consensus       380 EVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~  459 (565)
T KOG0472|consen  380 EVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVR  459 (565)
T ss_pred             HHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhh
Confidence            221111   1344444443                       33444555566667777777777777777777777767


Q ss_pred             CcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-hhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccC
Q 042875          300 LLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRR  378 (432)
Q Consensus       300 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~  378 (432)
                      |+.++++.|.+ ...|.. .-.+..++.+-.+++++..++.. +..+.+|..||+.+|.+..+|+.++++++|++|++++
T Consensus       460 Lq~LnlS~NrF-r~lP~~-~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~g  537 (565)
T KOG0472|consen  460 LQTLNLSFNRF-RMLPEC-LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDG  537 (565)
T ss_pred             hheeccccccc-ccchHH-HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecC
Confidence            77777777642 233332 11334555555666777775555 6777777777777777777777777777777777777


Q ss_pred             CCCC
Q 042875          379 CNML  382 (432)
Q Consensus       379 ~~~~  382 (432)
                      |++.
T Consensus       538 Npfr  541 (565)
T KOG0472|consen  538 NPFR  541 (565)
T ss_pred             CccC
Confidence            7754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.92  E-value=5.5e-27  Score=223.13  Aligned_cols=390  Identities=22%  Similarity=0.239  Sum_probs=249.6

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELN   88 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~   88 (432)
                      +++..|-...-+....++.-+|+.||+++|++.       .+|..+..++ +|+.|+++.|.+..+|... ++.+|+++.
T Consensus        26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-------~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~ln   97 (1081)
T KOG0618|consen   26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-------SFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLN   97 (1081)
T ss_pred             hhccccccccCchHHhhheeeeEEeeccccccc-------cCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhhe
Confidence            444555444433445556666888999888887       6888888886 8888988888888888665 788888888


Q ss_pred             eccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceE-------------------EEecCcccc
Q 042875           89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVT-------------------INFSYCVTL  149 (432)
Q Consensus        89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~-------------------L~l~~~~~~  149 (432)
                      |..|.++.        +|..+..+.+|+.|++++|.+...-..+..+..++.                   +++..+...
T Consensus        98 L~~n~l~~--------lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~  169 (1081)
T KOG0618|consen   98 LKNNRLQS--------LPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLG  169 (1081)
T ss_pred             eccchhhc--------CchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcc
Confidence            88888765        677778888888888888765432112333333333                   333333333


Q ss_pred             cccCCCCCCccE-EEecccccccccccccCCCC--------------------CCEEeeccccccccccchhcCCCCccE
Q 042875          150 IEFPQISGKITR-LYLDQSAIEEVPSSIECLTD--------------------LEVLDLRDCKRLKRISTRFCKLRSLVD  208 (432)
Q Consensus       150 ~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~~~--------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~  208 (432)
                      +.++.....+++ +++.+|.+..  ..+.+++.                    ++.|+...|.+....  ......+|+.
T Consensus       170 ~~~~~~i~~l~~~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~  245 (1081)
T KOG0618|consen  170 GSFLIDIYNLTHQLDLRYNEMEV--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQY  245 (1081)
T ss_pred             cchhcchhhhheeeecccchhhh--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--ccccccccee
Confidence            344444444554 5555555541  12222233                    333333333332111  1122456777


Q ss_pred             EEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccc
Q 042875          209 LFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS  288 (432)
Q Consensus       209 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  288 (432)
                      ++++.+.+ ..+|.+++.+.+|+.+++..|+++.+|..+...++|+.|.+..|... .+|....+..+|++|++..|.+.
T Consensus       246 ~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~  323 (1081)
T KOG0618|consen  246 LDISHNNL-SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP  323 (1081)
T ss_pred             eecchhhh-hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc
Confidence            77777544 34567777788888888888877777777777777777777776543 34555666778888888777776


Q ss_pred             ccCcccc--------------------------CCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-
Q 042875          289 QLPSSVA--------------------------DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-  341 (432)
Q Consensus       289 ~~~~~~~--------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-  341 (432)
                      .+|..+.                          .++.|+.|.+.+|.+.+.+... +.++.+|+.|++++|++.++|+. 
T Consensus       324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~  402 (1081)
T KOG0618|consen  324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASK  402 (1081)
T ss_pred             ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHH
Confidence            5544211                          1223445555555544443332 44778888888888888887754 


Q ss_pred             hhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC--CCCCccEEeccCCCCccc--cCC-CC-Cccce
Q 042875          342 IAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA--LPLCLKYLHLTGCNMLRS--LPE-LP-LCLQE  415 (432)
Q Consensus       342 ~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~--l~~-~~-~~L~~  415 (432)
                      +.+++.|+.|+++||+++.+|..+..++.|+.|...+|++ ...|+  ..+.|+.+|++.| .++.  +++ .+ +.|+.
T Consensus       403 ~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l-~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~Lky  480 (1081)
T KOG0618|consen  403 LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL-LSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKY  480 (1081)
T ss_pred             HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce-eechhhhhcCcceEEecccc-hhhhhhhhhhCCCcccce
Confidence            5677888888888888888888888888888887776664 44443  3467888888774 3433  233 44 78888


Q ss_pred             ecccccccc
Q 042875          416 LDATNCNRL  424 (432)
Q Consensus       416 L~l~~c~~l  424 (432)
                      ||+++.+++
T Consensus       481 LdlSGN~~l  489 (1081)
T KOG0618|consen  481 LDLSGNTRL  489 (1081)
T ss_pred             eeccCCccc
Confidence            888886643

>PLN03210 Resistant to P

Probab=99.91  E-value=1.6e-22  Score=212.44  Aligned_cols=315  Identities=27%  Similarity=0.382  Sum_probs=218.6

Q ss_pred             Cchhhcccc-cceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeeeeccccccccC
Q 042875           21 DPGAFTNMS-NLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQPW   98 (432)
Q Consensus        21 ~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~   98 (432)
                      .|..|..+| +|+.|++.++.+.       .+|..+. . .+|+.|++.++.+..++... .+++|+.|+++++...   
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~-------~lP~~f~-~-~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l---  647 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLR-------CMPSNFR-P-ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL---  647 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCC-------CCCCcCC-c-cCCcEEECcCccccccccccccCCCCCEEECCCCCCc---
Confidence            345565554 5888888887776       5666552 3 48888888888887776655 7788888888876421   


Q ss_pred             CCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCC--CCCCccEEEeccccc-ccccc
Q 042875           99 EGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQ--ISGKITRLYLDQSAI-EEVPS  174 (432)
Q Consensus        99 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~-~~~~~  174 (432)
                       ..   +| .++.+++|+.|++++|.....+| .+..+++|+.|++++|.....+|.  .+.+|+.|++.++.. ..+|.
T Consensus       648 -~~---ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~  722 (1153)
T PLN03210        648 -KE---IP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD  722 (1153)
T ss_pred             -Cc---CC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc
Confidence             11   44 36778888888888887777777 455678888888888877777775  346788888887643 33443


Q ss_pred             cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc-------cchHhhhcCCCCCeeeeccccc-cccCcc
Q 042875          175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE-------RFPEILEKMEHLKRINLDGTAI-TELPSS  246 (432)
Q Consensus       175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~~-~~~~~~  246 (432)
                      .   .++|+.|+++++.+ ..+|..+ .+++|+.|.+.++....       ..+......++|+.|++++|.. ..+|..
T Consensus       723 ~---~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s  797 (1153)
T PLN03210        723 I---STNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS  797 (1153)
T ss_pred             c---cCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence            2   35778888888764 3455433 46777777776543211       1111223356899999998754 478888


Q ss_pred             cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCcc
Q 042875          247 FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLG  326 (432)
Q Consensus       247 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  326 (432)
                      ++++++|+.|++++|.....+|..+ .                       +++|+.|++++|.....++.    ..++++
T Consensus       798 i~~L~~L~~L~Ls~C~~L~~LP~~~-~-----------------------L~sL~~L~Ls~c~~L~~~p~----~~~nL~  849 (1153)
T PLN03210        798 IQNLHKLEHLEIENCINLETLPTGI-N-----------------------LESLESLDLSGCSRLRTFPD----ISTNIS  849 (1153)
T ss_pred             hhCCCCCCEEECCCCCCcCeeCCCC-C-----------------------ccccCEEECCCCCccccccc----cccccC
Confidence            9999999999999987666555432 2                       34455555555554444433    236788


Q ss_pred             EEEeeccCCCCCchhhhcCCCCCEEEeeCC-CCcccChhccCCCCCCeeeccCCCCCccc
Q 042875          327 LLYIMNCAVMEIPQEIAYLSSLKSLDLRGN-NFESLPASIKQLSRLCSLDLRRCNMLQSL  385 (432)
Q Consensus       327 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~~~~~~~~  385 (432)
                      .|+++++.+..+|..+..+++|+.|++++| .+..+|..+..+++|+.+++++|..+..+
T Consensus       850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence            888888888888888888999999999885 66678888888899999999999766544

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.91  E-value=1e-25  Score=214.48  Aligned_cols=374  Identities=23%  Similarity=0.289  Sum_probs=246.7

Q ss_pred             eEeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCce
Q 042875            7 GIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLV   85 (432)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~   85 (432)
                      -..+|+++|.+.... ..+..+++|+.|+++.|-|.       ..|.....+- +|+++.|.++.++.+|..+ .+.+|+
T Consensus        47 L~~l~lsnn~~~~fp-~~it~l~~L~~ln~s~n~i~-------~vp~s~~~~~-~l~~lnL~~n~l~~lP~~~~~lknl~  117 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFP-IQITLLSHLRQLNLSRNYIR-------SVPSSCSNMR-NLQYLNLKNNRLQSLPASISELKNLQ  117 (1081)
T ss_pred             eEEeeccccccccCC-chhhhHHHHhhcccchhhHh-------hCchhhhhhh-cchhheeccchhhcCchhHHhhhccc
Confidence            346788999776664 78888999999999999887       5677777884 9999999999999999887 778899


Q ss_pred             eeeeccccccccCCCcccccCCcccCcccCceEeccCC-------------------ccCCcCC-CCCCCCCceEEEecC
Q 042875           86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGC-------------------KSLRSFP-SNLHFVCPVTINFSY  145 (432)
Q Consensus        86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------~~~~~~~-~~~~~~~L~~L~l~~  145 (432)
                      .|++++|.+..        +|..+..+..+..+..++|                   ...+.+. ....+.+  .|++.+
T Consensus       118 ~LdlS~N~f~~--------~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~  187 (1081)
T KOG0618|consen  118 YLDLSFNHFGP--------IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY  187 (1081)
T ss_pred             ccccchhccCC--------CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence            99999988764        3322333322222222222                   1111111 1111111  244444


Q ss_pred             cccccccCC--------------------CCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCC
Q 042875          146 CVTLIEFPQ--------------------ISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRS  205 (432)
Q Consensus       146 ~~~~~~~~~--------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  205 (432)
                      |........                    .-++++.|+..+|-+....... ...+|++++++.+.+.. +|+++..+.+
T Consensus       188 N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p-~p~nl~~~dis~n~l~~-lp~wi~~~~n  265 (1081)
T KOG0618|consen  188 NEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP-VPLNLQYLDISHNNLSN-LPEWIGACAN  265 (1081)
T ss_pred             chhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccc-ccccceeeecchhhhhc-chHHHHhccc
Confidence            433311111                    1123333333333333221111 12355666666654333 3455556666


Q ss_pred             ccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCC--------------------
Q 042875          206 LVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLD--------------------  265 (432)
Q Consensus       206 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------------  265 (432)
                      |+.+....|.+ ..+|..+....+|+.+.+..|++..+|+.....+.|++|++..|.+..                    
T Consensus       266 le~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~  344 (1081)
T KOG0618|consen  266 LEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS  344 (1081)
T ss_pred             ceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh
Confidence            66666666544 445555555566666666666666666555556666666666554321                    


Q ss_pred             ----cccc-ccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCc
Q 042875          266 ----KLPD-NIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP  339 (432)
Q Consensus       266 ----~~~~-~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  339 (432)
                          ..|. .-..++.|+.|.+.+|.++ ...+.+..+++|+.|++++|. ...+|...+..+..|++|+++||.++++|
T Consensus       345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp  423 (1081)
T KOG0618|consen  345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLP  423 (1081)
T ss_pred             ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhh
Confidence                1110 1123567888999999998 566678889999999999997 55677777888999999999999999999


Q ss_pred             hhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcc-cCC-CC-CCccEEeccCCCCcc
Q 042875          340 QEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQS-LPA-LP-LCLKYLHLTGCNMLR  404 (432)
Q Consensus       340 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~-~~-~~L~~L~l~~c~~l~  404 (432)
                      ..+..++.|++|-..+|++..+| .+..++.|+.+|++.|++... +++ .+ +.|++||+++|.++.
T Consensus       424 ~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  424 DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence            99999999999999999999998 788999999999999987553 332 33 789999999998643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=2.1e-18  Score=169.37  Aligned_cols=221  Identities=22%  Similarity=0.202  Sum_probs=125.2

Q ss_pred             CCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCcc
Q 042875          136 VCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL  215 (432)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  215 (432)
                      ++|++|++++|.+. .+|...++|+.|++.+|.+..+|...   ..|+.|++++|.+. .+|.   ..++|+.|++++|.
T Consensus       242 ~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~  313 (788)
T PRK15387        242 PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQ  313 (788)
T ss_pred             CCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCc
Confidence            44555555544333 33444445555555555555444321   34555555555433 2232   12456666666554


Q ss_pred             CcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCcccc
Q 042875          216 NLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVA  295 (432)
Q Consensus       216 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  295 (432)
                      +.. +|..   ..+|+.|.+++|.++.+|..   ..+|+.|++++|.+.. +|..   ..+|+.|++++|.+..+|... 
T Consensus       314 L~~-Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l~-  381 (788)
T PRK15387        314 LAS-LPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPALP-  381 (788)
T ss_pred             ccc-CCCC---cccccccccccCcccccccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcccc-
Confidence            432 2221   12455566666666655531   2356666666665442 3331   245666666666666555432 


Q ss_pred             CCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeee
Q 042875          296 DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLD  375 (432)
Q Consensus       296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~  375 (432)
                        .+|+.|++++|.+. .+|.    .+++|+.|++++|.+..+|..   +.+|+.|++++|+++.+|..+..+++|+.++
T Consensus       382 --~~L~~LdLs~N~Lt-~LP~----l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        382 --SGLKELIVSGNRLT-SLPV----LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVN  451 (788)
T ss_pred             --cccceEEecCCccc-CCCC----cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEE
Confidence              45777777777643 3332    235678888888887777653   3467778888888888887777888888888


Q ss_pred             ccCCCCCcccC
Q 042875          376 LRRCNMLQSLP  386 (432)
Q Consensus       376 l~~~~~~~~~~  386 (432)
                      +++|++.+..+
T Consensus       452 Ls~N~Ls~~~~  462 (788)
T PRK15387        452 LEGNPLSERTL  462 (788)
T ss_pred             CCCCCCCchHH
Confidence            88887765544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=1.9e-18  Score=169.66  Aligned_cols=263  Identities=18%  Similarity=0.237  Sum_probs=195.1

Q ss_pred             hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceE
Q 042875           61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVT  140 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~  140 (432)
                      +-..|+++.+.++.+|..+. .+|+.|++.+|+++.        +|.   ..++|+.|++++|.+. .+|..  .++|+.
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~--------LP~---lp~~Lk~LdLs~N~Lt-sLP~l--p~sL~~  266 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQLT-SLPVL--PPGLLE  266 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCC--------CCC---CCCCCcEEEecCCccC-cccCc--ccccce
Confidence            45567888888888887553 478888888888775        342   2467888888887554 45532  467888


Q ss_pred             EEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccc
Q 042875          141 INFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERF  220 (432)
Q Consensus       141 L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  220 (432)
                      |++++|.+. .++....+|+.|++.+|++..+|..   .++|+.|++++|.+.+ +|..   ...|+.|++.+|.+. .+
T Consensus       267 L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L  337 (788)
T PRK15387        267 LSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL  337 (788)
T ss_pred             eeccCCchh-hhhhchhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence            888888654 5666667888899999888888763   4678999999987654 3432   345788888887654 34


Q ss_pred             hHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCC
Q 042875          221 PEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNAL  300 (432)
Q Consensus       221 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L  300 (432)
                      |..   ..+|++|++++|+++.+|..   ..+|+.|++++|.+. .+|..   ..+|+.|++++|.+..+|..   .++|
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L  404 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---PSEL  404 (788)
T ss_pred             ccc---ccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---ccCC
Confidence            432   24789999999999988753   356888889888665 35543   35789999999998877754   3679


Q ss_pred             cEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc-ccChhc
Q 042875          301 LILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE-SLPASI  365 (432)
Q Consensus       301 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~  365 (432)
                      +.|++++|.+. .+|.    .+.+|+.|++++|+++.+|..+..+++|+.|++++|.++ ..+..+
T Consensus       405 ~~LdLS~N~Ls-sIP~----l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        405 KELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CEEEccCCcCC-CCCc----chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            99999999854 3553    245789999999999999999999999999999999998 444434

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.73  E-value=2.2e-19  Score=156.23  Aligned_cols=245  Identities=19%  Similarity=0.188  Sum_probs=149.5

Q ss_pred             eeEeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceee-cCCCCCCCCCCCC--CCC
Q 042875            6 EGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLH-WDTYPLRILPSNF--KPK   82 (432)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~-l~~~~~~~l~~~~--~~~   82 (432)
                      +++.+++..|.+..+.+.+|..+++||.|||+.|+|+.|      -|..+..++ ++-.|- +++|+++.+|...  ++.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I------~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI------APDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhc------ChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHH
Confidence            467788899999999999999999999999999999863      355666676 554544 4557888887764  666


Q ss_pred             CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCccccc-----------
Q 042875           83 NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLI-----------  150 (432)
Q Consensus        83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-----------  150 (432)
                      .|+.|.+.-|++.-+       ....+..++++..|.+.+|.+...-. .+..+..++.+.+..+.+..           
T Consensus       141 slqrLllNan~i~Ci-------r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~  213 (498)
T KOG4237|consen  141 SLQRLLLNANHINCI-------RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL  213 (498)
T ss_pred             HHHHHhcChhhhcch-------hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence            666666666655422       12235555555555555543322111 22223333333333332110           


Q ss_pred             -ccCCCC-------------------------CCccEE----Eeccccccccc-ccccCCCCCCEEeeccccccccccch
Q 042875          151 -EFPQIS-------------------------GKITRL----YLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTR  199 (432)
Q Consensus       151 -~~~~~~-------------------------~~L~~L----~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~  199 (432)
                       ..+...                         ..++.+    ...++-....| ..|..+++|+.+++++|.+...-+.+
T Consensus       214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a  293 (498)
T KOG4237|consen  214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA  293 (498)
T ss_pred             hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence             000000                         011111    11111112222 24677788888888888777776777


Q ss_pred             hcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-ccCcccCCCCCccEEeecCCCCC
Q 042875          200 FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKL  264 (432)
Q Consensus       200 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~  264 (432)
                      |.....+++|++.+|.+...-...|..+..|+.|++++|+++ .-|.+|..+..|.+|.+-.|++.
T Consensus       294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            777888888888877665555556777788888888888887 34556677777888877777654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=9.5e-18  Score=153.85  Aligned_cols=186  Identities=21%  Similarity=0.208  Sum_probs=85.2

Q ss_pred             ccccCCCCCCEEeeccccccccccchhcCC---CCccEEEecCccCccc----chHhhhcC-CCCCeeeecccccc----
Q 042875          174 SSIECLTDLEVLDLRDCKRLKRISTRFCKL---RSLVDLFVNGCLNLER----FPEILEKM-EHLKRINLDGTAIT----  241 (432)
Q Consensus       174 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~~----  241 (432)
                      ..+..+++|+.|++++|.+....+..+..+   ++|+.|++++|...+.    +...+..+ ++|+++++++|.++    
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            344445566666666655543333333222   2366666665544321    12233344 55556666555554    


Q ss_pred             -ccCcccCCCCCccEEeecCCCCCCc----cccccCCccccccccccccccc-----ccCccccCCCCCcEEeccCCCCC
Q 042875          242 -ELPSSFENLPGLEELFVSDCSKLDK----LPDNIGNLESLRHISAAGSAIS-----QLPSSVADSNALLILDFSRCKGL  311 (432)
Q Consensus       242 -~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~  311 (432)
                       .+...+..+++|++|++++|.+.+.    ++..+...++|+.|++++|.+.     .+...+..+++|++|++++|...
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence             2223344445566666655544421    1112223345555555555443     12223344455666666555533


Q ss_pred             CCCchhhhcC----CCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCc
Q 042875          312 VSLPRSLLLG----LSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       312 ~~~~~~~~~~----~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~  359 (432)
                      +.....+...    .+.|+.|++++|.++.     +...+..+++|+.+++++|.++
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            2111111111    2456666666665542     2333444455666666665555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.68  E-value=2.8e-16  Score=155.37  Aligned_cols=242  Identities=20%  Similarity=0.304  Sum_probs=174.7

Q ss_pred             CCceEEEecCcccccccCC-CCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCc
Q 042875          136 VCPVTINFSYCVTLIEFPQ-ISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGC  214 (432)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  214 (432)
                      .+...|+++++.+. .+|. ....++.|++.+|.+..+|..+.  ++|+.|++++|.+. .+|..+  .++|+.|++++|
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCC
Confidence            35677888876544 4565 33578899999999888887664  58899999988754 455444  347889999988


Q ss_pred             cCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccc
Q 042875          215 LNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV  294 (432)
Q Consensus       215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  294 (432)
                      .+. .+|..+.  .+|+.|++++|+++.+|..+.  ++|+.|++++|.+.. +|..+.  ++|+.|++++|.+..+|..+
T Consensus       252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l  323 (754)
T PRK15370        252 RIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETL  323 (754)
T ss_pred             ccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccc
Confidence            765 5665553  478999999988887776543  578999999886653 454332  47888889888888766543


Q ss_pred             cCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCee
Q 042875          295 ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSL  374 (432)
Q Consensus       295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L  374 (432)
                        .++|+.|++++|.+. .+|..+   +++|+.|++++|.+..+|..+  .++|+.|++++|.++.+|..+.  ..|+.|
T Consensus       324 --~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~L  393 (754)
T PRK15370        324 --PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIM  393 (754)
T ss_pred             --cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHH
Confidence              367888888888744 355432   368899999999888877655  3688999999998888887653  368888


Q ss_pred             eccCCCCCcccCCC-------CCCccEEeccCCCC
Q 042875          375 DLRRCNMLQSLPAL-------PLCLKYLHLTGCNM  402 (432)
Q Consensus       375 ~l~~~~~~~~~~~~-------~~~L~~L~l~~c~~  402 (432)
                      ++++|++. .+|..       .+.+..+++.+|+.
T Consensus       394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence            88888764 45531       25678888888763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=8.1e-16  Score=152.14  Aligned_cols=245  Identities=20%  Similarity=0.321  Sum_probs=169.8

Q ss_pred             cCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCC-CCCCccEEEecccccccccccccCCCCCCEEeeccccc
Q 042875          114 YLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQ-ISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKR  192 (432)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  192 (432)
                      +...|.++++.. ..+|... .+.++.|++++|.+. .+|. ...+|+.|++.+|.+..+|..+.  ++|+.|++++|.+
T Consensus       179 ~~~~L~L~~~~L-tsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L  253 (754)
T PRK15370        179 NKTELRLKILGL-TTIPACI-PEQITTLILDNNELK-SLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI  253 (754)
T ss_pred             CceEEEeCCCCc-CcCCccc-ccCCcEEEecCCCCC-cCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence            456777777543 3455322 257888888888665 4443 34578888888888888877654  4788888888875


Q ss_pred             cccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccC
Q 042875          193 LKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIG  272 (432)
Q Consensus       193 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  272 (432)
                      . .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|+++.+|..+.  ++|+.|++++|.+.. +|..+ 
T Consensus       254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l-  323 (754)
T PRK15370        254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-LPETL-  323 (754)
T ss_pred             C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-CCccc-
Confidence            4 4555443  47888888877654 4555433  478888888888887765432  468888888876653 44433 


Q ss_pred             CcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEE
Q 042875          273 NLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLD  352 (432)
Q Consensus       273 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  352 (432)
                       .++|+.|++++|.+..+|..+.  ++|+.|++++|.+. .+|..+   .+.|+.|++++|.+..+|..+.  .+|+.|+
T Consensus       324 -~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt~LP~~l~--~sL~~Ld  394 (754)
T PRK15370        324 -PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALTNLPENLP--AALQIMQ  394 (754)
T ss_pred             -cccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCCCCCHhHH--HHHHHHh
Confidence             3678888888888877765543  68888888888743 455432   3578888888888888877654  4688888


Q ss_pred             eeCCCCcccChhc----cCCCCCCeeeccCCCCC
Q 042875          353 LRGNNFESLPASI----KQLSRLCSLDLRRCNML  382 (432)
Q Consensus       353 l~~n~l~~l~~~~----~~l~~L~~L~l~~~~~~  382 (432)
                      +++|+++.+|..+    ..++.+..+++.+|++.
T Consensus       395 Ls~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        395 ASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            8888888776544    34477788888888864

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.60  E-value=1.1e-17  Score=145.85  Aligned_cols=128  Identities=14%  Similarity=0.176  Sum_probs=86.1

Q ss_pred             chhhhcceeecCCCCCCCCCCCC--CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC--CC
Q 042875           57 YLPEKLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SN  132 (432)
Q Consensus        57 ~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~  132 (432)
                      .+|..-.+++|..|.++.+|...  .+++||+|||++|+|+.+       .|..|..++++..|.+.++..+..+|  .+
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-------APDAFKGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-------ChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence            34456777888888888888775  778888888888888865       45568888888888777766666666  45


Q ss_pred             CCCCCceEEEecCccccc---ccCCCCCCccEEEecccccccccc-cccCCCCCCEEeecccc
Q 042875          133 LHFVCPVTINFSYCVTLI---EFPQISGKITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCK  191 (432)
Q Consensus       133 ~~~~~L~~L~l~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~  191 (432)
                      .++..++.|.+.-|...-   +.-..++++..|.+.+|.+..+++ .+..+..++.+.+..+.
T Consensus       137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            556777777666554331   222344556666666676666665 55566666666665554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.60  E-value=4.7e-16  Score=142.60  Aligned_cols=210  Identities=20%  Similarity=0.209  Sum_probs=105.1

Q ss_pred             ccccccCCCCCCEEeecccccc------ccccchhcCCCCccEEEecCccCcccchHhhhcCCC---CCeeeecccccc-
Q 042875          172 VPSSIECLTDLEVLDLRDCKRL------KRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEH---LKRINLDGTAIT-  241 (432)
Q Consensus       172 ~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~~~-  241 (432)
                      ++..+...+.++.++++++...      ..++..+..+++|+.|++++|.+....+..+..+..   |++|+++++.++ 
T Consensus        43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~  122 (319)
T cd00116          43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD  122 (319)
T ss_pred             HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence            4445556666777777766543      123344556777888888777665544444444433   777777777665 


Q ss_pred             ----ccCcccCCC-CCccEEeecCCCCCCc----cccccCCccccccccccccccc-----ccCccccCCCCCcEEeccC
Q 042875          242 ----ELPSSFENL-PGLEELFVSDCSKLDK----LPDNIGNLESLRHISAAGSAIS-----QLPSSVADSNALLILDFSR  307 (432)
Q Consensus       242 ----~~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~  307 (432)
                          .+...+..+ ++|+.|++++|.+.+.    +...+..+++|++|++++|.+.     .++..+...++|++|++++
T Consensus       123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  202 (319)
T cd00116         123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN  202 (319)
T ss_pred             HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence                122334445 6677777777765532    2223344455666666665554     1222233334555555555


Q ss_pred             CCCCCCCch---hhhcCCCCccEEEeeccCCCC-Cchhh-hc----CCCCCEEEeeCCCCc-----ccChhccCCCCCCe
Q 042875          308 CKGLVSLPR---SLLLGLSSLGLLYIMNCAVME-IPQEI-AY----LSSLKSLDLRGNNFE-----SLPASIKQLSRLCS  373 (432)
Q Consensus       308 ~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~-~~~~~-~~----~~~L~~L~l~~n~l~-----~l~~~~~~l~~L~~  373 (432)
                      |.+.+....   ..+..+++|+.|++++|.++. ....+ ..    .+.|+.|++++|.++     .+...+..+++|++
T Consensus       203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~  282 (319)
T cd00116         203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE  282 (319)
T ss_pred             CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence            543321111   112234455555555555443 11111 11    245555555555443     12233334445555


Q ss_pred             eeccCCCC
Q 042875          374 LDLRRCNM  381 (432)
Q Consensus       374 L~l~~~~~  381 (432)
                      +++++|.+
T Consensus       283 l~l~~N~l  290 (319)
T cd00116         283 LDLRGNKF  290 (319)
T ss_pred             EECCCCCC
Confidence            55555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=2e-16  Score=122.48  Aligned_cols=167  Identities=26%  Similarity=0.403  Sum_probs=96.3

Q ss_pred             CCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccc
Q 042875           73 RILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIE  151 (432)
Q Consensus        73 ~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~  151 (432)
                      ..++..+.+.+.+.|.+++|+++.        +|+.+..+.+|++|++.+|+.. ++| .+..+++|+.|+++.|+    
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~--------vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnr----   90 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTV--------VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNR----   90 (264)
T ss_pred             hhcccccchhhhhhhhcccCceee--------cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhh----
Confidence            355666777778888888888764        6777788888888887775432 233 34445555555444332    


Q ss_pred             cCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccc-cccchhcCCCCccEEEecCccCcccchHhhhcCCCC
Q 042875          152 FPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLK-RISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHL  230 (432)
Q Consensus       152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  230 (432)
                                       +..+|..|+.+|.|+.|++.+|.+.+ .+|..|..+                        ..|
T Consensus        91 -----------------l~~lprgfgs~p~levldltynnl~e~~lpgnff~m------------------------~tl  129 (264)
T KOG0617|consen   91 -----------------LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM------------------------TTL  129 (264)
T ss_pred             -----------------hhcCccccCCCchhhhhhccccccccccCCcchhHH------------------------HHH
Confidence                             23445666666666666666665543 234444444                        444


Q ss_pred             CeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccc
Q 042875          231 KRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV  294 (432)
Q Consensus       231 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  294 (432)
                      +.|.++.|.+..+|+.++++++|+.|.+++|... .+|..++.+..|++|.+.+|++.-+|+.+
T Consensus       130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             HHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence            4445555555555555555555555555555433 24555555556666666666555555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=1.2e-16  Score=123.68  Aligned_cols=154  Identities=27%  Similarity=0.458  Sum_probs=98.3

Q ss_pred             CCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEecc
Q 042875          227 MEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFS  306 (432)
Q Consensus       227 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  306 (432)
                      +.++..|.+++|+++.+|+.+..+.+|+.|.+.+|. ...+|..++.++.|+.|+++-|++..+|..+++++.|+.||+.
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence            344445555555555555555555555555555543 2344555555666666666666666666666666666666666


Q ss_pred             CCCCCCC-CchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC
Q 042875          307 RCKGLVS-LPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML  382 (432)
Q Consensus       307 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~  382 (432)
                      .|..... +|.. |..++.|+-|+++.|.+.-+|..++.+++|+.|.+.+|.+..+|..++.++.|++|.+.+|++.
T Consensus       111 ynnl~e~~lpgn-ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  111 YNNLNENSLPGN-FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccCCcc-hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence            6654432 3333 3356777777777777777777777788888888888877777877777888888888877743

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.31  E-value=8.3e-14  Score=120.13  Aligned_cols=131  Identities=17%  Similarity=0.218  Sum_probs=61.1

Q ss_pred             CCCCeeeecccccccc-----CcccCCCCCccEEeecCCCCCCc----cccccCCccccccccccccccc-----ccCcc
Q 042875          228 EHLKRINLDGTAITEL-----PSSFENLPGLEELFVSDCSKLDK----LPDNIGNLESLRHISAAGSAIS-----QLPSS  293 (432)
Q Consensus       228 ~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~-----~~~~~  293 (432)
                      +.|+.+..++|++...     ...+...+.|+.+.+..|.+...    +...+.++++|+.|++.+|.++     .+...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            4455555555554421     12234445555555555443211    1123344555555555555543     22333


Q ss_pred             ccCCCCCcEEeccCCCCCCCCchhh----hcCCCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCC
Q 042875          294 VADSNALLILDFSRCKGLVSLPRSL----LLGLSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNF  358 (432)
Q Consensus       294 ~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l  358 (432)
                      +..+++|+.+.+++|...+.-...+    -...+.|+++.+.+|.|+.     +...+...|.|+.|++++|++
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4444555555555554333322211    1234556666666665554     333344455566666666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.21  E-value=3.2e-11  Score=121.79  Aligned_cols=101  Identities=23%  Similarity=0.253  Sum_probs=59.2

Q ss_pred             cCceEeccCCcc-CCcCCC--CCCCCCceEEEecCcccccccCCCCC---CccEEEecccccccccccccCCCCCCEEee
Q 042875          114 YLSALSFEGCKS-LRSFPS--NLHFVCPVTINFSYCVTLIEFPQISG---KITRLYLDQSAIEEVPSSIECLTDLEVLDL  187 (432)
Q Consensus       114 ~L~~L~l~~~~~-~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  187 (432)
                      +|++|-+.++.. ...++.  +..+|.|+.|++++|.....+|..++   +|+.|+++++.+..+|..++++..|.+|++
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence            455555555432 223332  44466666666666655555554333   445555555566677777777777777777


Q ss_pred             ccccccccccchhcCCCCccEEEecCc
Q 042875          188 RDCKRLKRISTRFCKLRSLVDLFVNGC  214 (432)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~  214 (432)
                      ..+.....++.....+.+|++|.+...
T Consensus       626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  626 EVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccchhhhcccccEEEeecc
Confidence            776555445554555777777776653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.19  E-value=1.2e-11  Score=124.87  Aligned_cols=249  Identities=24%  Similarity=0.329  Sum_probs=167.8

Q ss_pred             CCCCccEEEecccccccccccccCCCCCCEEeecccc--ccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCe
Q 042875          155 ISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCK--RLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKR  232 (432)
Q Consensus       155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  232 (432)
                      .+...+.+.+-++.+..++.... ++.|++|-+.++.  ........|..++.|+.|++++|...+.+|..++.+-+|++
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             chhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            34567888888888877766554 4579999998876  33344455788999999999999888999999999999999


Q ss_pred             eeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCcc---ccCCCCCcEEeccCCC
Q 042875          233 INLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS---VADSNALLILDFSRCK  309 (432)
Q Consensus       233 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~  309 (432)
                      |+++++.+..+|..++++..|.+|++..+.....++.....+.+|++|.+...........   +..+.+|+.+......
T Consensus       600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence            9999999999999999999999999999877666666666799999999877653322222   3344444444443222


Q ss_pred             CCCCCchhhhcCCCCcc----EEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccCh-hc-----cC-CCCCCeeeccC
Q 042875          310 GLVSLPRSLLLGLSSLG----LLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPA-SI-----KQ-LSRLCSLDLRR  378 (432)
Q Consensus       310 ~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~-----~~-l~~L~~L~l~~  378 (432)
                      .  .+... +..+..|.    .+.+.++.....+..+..+.+|+.|.+.+|.+.+... ..     .. ++++..+.+.+
T Consensus       680 ~--~~~e~-l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~  756 (889)
T KOG4658|consen  680 V--LLLED-LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN  756 (889)
T ss_pred             h--HhHhh-hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence            1  00011 11222222    3333334444466667788888888888887763321 10     11 33455555555


Q ss_pred             CCCCcccC--CCCCCccEEeccCCCCccccC
Q 042875          379 CNMLQSLP--ALPLCLKYLHLTGCNMLRSLP  407 (432)
Q Consensus       379 ~~~~~~~~--~~~~~L~~L~l~~c~~l~~l~  407 (432)
                      |.....+.  -.+++|+.|.+..|..+..+.
T Consensus       757 ~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  757 CHMLRDLTWLLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             cccccccchhhccCcccEEEEecccccccCC
Confidence            55444433  245678888888887766544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=4.5e-12  Score=112.65  Aligned_cols=213  Identities=17%  Similarity=0.160  Sum_probs=133.9

Q ss_pred             ccccccccCCCCCCEEeecccccccccc--chhcCCCCccEEEecCccCccc--chHhhhcCCCCCeeeeccccccccC-
Q 042875          170 EEVPSSIECLTDLEVLDLRDCKRLKRIS--TRFCKLRSLVDLFVNGCLNLER--FPEILEKMEHLKRINLDGTAITELP-  244 (432)
Q Consensus       170 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~-  244 (432)
                      +.+...=.++.+|+...+.++... ..+  .....+++++.|++++|-+...  +-.....+++|+.|+++.|++...- 
T Consensus       111 Dki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  111 DKIAAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             HHHHHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence            333333345566777777765432 212  3455677777777777533322  2233456778888888887776221 


Q ss_pred             -cccCCCCCccEEeecCCCCCCc-cccccCCccccccccccccc-ccccCccccCCCCCcEEeccCCCCCCCCchhhhcC
Q 042875          245 -SSFENLPGLEELFVSDCSKLDK-LPDNIGNLESLRHISAAGSA-ISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLG  321 (432)
Q Consensus       245 -~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  321 (432)
                       .....+++++.|.+++|.+... +......+|+|+.|++.+|. +..-.....-++.|+.|+|++|.+.+.-.......
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~  269 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT  269 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence             1223567788888888876532 22223457888888888884 32222333445678888888888766554444567


Q ss_pred             CCCccEEEeeccCCCC--Cchh-----hhcCCCCCEEEeeCCCCcccC--hhccCCCCCCeeeccCCCCCc
Q 042875          322 LSSLGLLYIMNCAVME--IPQE-----IAYLSSLKSLDLRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       322 ~~~L~~L~l~~~~~~~--~~~~-----~~~~~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~  383 (432)
                      ++.|..|+++.|++.+  .|..     ...+++|++|++..|++.+++  ..+..+++|+.+.+..+.+.+
T Consensus       270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            8888888888888887  4443     356788888988888887554  345566777777777766533

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=2e-11  Score=105.61  Aligned_cols=176  Identities=18%  Similarity=0.192  Sum_probs=110.2

Q ss_pred             cCCCCCccEEeecCCCCCCcccc----ccCCcccccccccccccccc--------------cCccccCCCCCcEEeccCC
Q 042875          247 FENLPGLEELFVSDCSKLDKLPD----NIGNLESLRHISAAGSAISQ--------------LPSSVADSNALLILDFSRC  308 (432)
Q Consensus       247 ~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~--------------~~~~~~~~~~L~~L~l~~~  308 (432)
                      +..+++|+++++++|-+-...++    -+.++..|++|.+.+|.+..              ......+-++|+++..+.|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            33444555555555443322221    12334555555555555431              1123445578888888888


Q ss_pred             CCCCCCc---hhhhcCCCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCc-----ccChhccCCCCCCeee
Q 042875          309 KGLVSLP---RSLLLGLSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFE-----SLPASIKQLSRLCSLD  375 (432)
Q Consensus       309 ~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~-----~l~~~~~~l~~L~~L~  375 (432)
                      ++-..-.   ...+...+.|+.+.++.|.|..     +...+..|++|+.|+|.+|-++     .+...+..+++|++++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            7443322   2234456789999999998876     4456788999999999999777     3445667788899999


Q ss_pred             ccCCCCCccc--------CCCCCCccEEeccCCCCccc----c--C-CCCCccceecccccc
Q 042875          376 LRRCNMLQSL--------PALPLCLKYLHLTGCNMLRS----L--P-ELPLCLQELDATNCN  422 (432)
Q Consensus       376 l~~~~~~~~~--------~~~~~~L~~L~l~~c~~l~~----l--~-~~~~~L~~L~l~~c~  422 (432)
                      +++|.+.+.-        -...++|+++.+.+|.--..    +  + ...+.|+.|++++|.
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            9999875432        23467899999988742111    0  1 146778899998863

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.6e-11  Score=107.02  Aligned_cols=203  Identities=20%  Similarity=0.183  Sum_probs=102.2

Q ss_pred             hcceeecCCCCCCCCCC--CC-CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC--CCCC
Q 042875           61 KLRYLHWDTYPLRILPS--NF-KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS--NLHF  135 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~  135 (432)
                      +|+.+.|.++.+...+.  .. .|++++.|||++|-+....  .   +......+++|+.|+++.|.+..-...  ...+
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~--~---v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF--P---VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH--H---HHHHHHhcccchhcccccccccCCccccchhhh
Confidence            66777777776665553  22 6777777777777655321  1   223345667777777776655432221  1235


Q ss_pred             CCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCcc
Q 042875          136 VCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL  215 (432)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  215 (432)
                      ++|+.|.++.|.+..                   ..+-.....+|+|+.|++..|...............|++|++++|.
T Consensus       197 ~~lK~L~l~~CGls~-------------------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSW-------------------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             hhhheEEeccCCCCH-------------------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence            555666666655442                   2222334445666666666653222222223334556666666655


Q ss_pred             Ccccc-hHhhhcCCCCCeeeecccccc--ccCcc-----cCCCCCccEEeecCCCCCCc-cccccCCccccccccccccc
Q 042875          216 NLERF-PEILEKMEHLKRINLDGTAIT--ELPSS-----FENLPGLEELFVSDCSKLDK-LPDNIGNLESLRHISAAGSA  286 (432)
Q Consensus       216 ~~~~~-~~~l~~l~~L~~L~l~~~~~~--~~~~~-----~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~  286 (432)
                      +.... ......++.|+.|+++.+.++  .+|+.     ...+++|+.|.+..|++... ....+..+++|+.+.+..+.
T Consensus       258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            44321 133445566666666666555  22322     34555666666666654221 01122334455555544444


Q ss_pred             c
Q 042875          287 I  287 (432)
Q Consensus       287 ~  287 (432)
                      +
T Consensus       338 l  338 (505)
T KOG3207|consen  338 L  338 (505)
T ss_pred             c
Confidence            3

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=8.9e-10  Score=89.30  Aligned_cols=123  Identities=25%  Similarity=0.257  Sum_probs=43.1

Q ss_pred             cccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhh-hcCCCCCEEE
Q 042875          274 LESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLD  352 (432)
Q Consensus       274 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~  352 (432)
                      +..+++|++.++.|..+...-..+.+|+.|++++|.... +.  .+..+++|++|++++|.++.+...+ ..+|+|++|.
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-LE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCCcc-cc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            345666666666666543221245667777777776432 22  1335678888888888888875544 4678888888


Q ss_pred             eeCCCCcccC--hhccCCCCCCeeeccCCCCCcccC------CCCCCccEEeccC
Q 042875          353 LRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQSLP------ALPLCLKYLHLTG  399 (432)
Q Consensus       353 l~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~L~~L~l~~  399 (432)
                      +++|+|..+.  ..++.+++|+.|++.+|+....-.      ..+++|+.||-..
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            8888777332  456678888888888888654321      1346777776544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=4.2e-10  Score=95.65  Aligned_cols=127  Identities=26%  Similarity=0.298  Sum_probs=96.1

Q ss_pred             cCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCE
Q 042875          271 IGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKS  350 (432)
Q Consensus       271 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  350 (432)
                      +.....|+++++++|.|..+..++.-.|.++.|+++.|.....-.   .+.+++|+.|++++|.++.+..+-..+-++++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence            344577888999999888888888888899999998887544333   33678899999999988887666667778889


Q ss_pred             EEeeCCCCcccChhccCCCCCCeeeccCCCCCc--ccC--CCCCCccEEeccCCC
Q 042875          351 LDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ--SLP--ALPLCLKYLHLTGCN  401 (432)
Q Consensus       351 L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~--~~~--~~~~~L~~L~l~~c~  401 (432)
                      |.+++|.+..+ .++.++-+|..|++++|++-.  ..-  ...++|+.+.+.+|+
T Consensus       357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             eehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            99999888766 467788888899999887522  111  234578888888876

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.92  E-value=1.6e-09  Score=102.27  Aligned_cols=175  Identities=30%  Similarity=0.440  Sum_probs=87.7

Q ss_pred             CCccEEEecCccCcccchHhhhcCC-CCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCccccccccc
Q 042875          204 RSLVDLFVNGCLNLERFPEILEKME-HLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISA  282 (432)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  282 (432)
                      ..++.+.+.++.. ..++....... +|+.+++++|++..++..+..+++|+.|++++|++.. ++...+..+.|+.+++
T Consensus       116 ~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCccc-ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheec
Confidence            4455555554332 23333333332 5555555555555554445555555555555554332 2222224455555555


Q ss_pred             ccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccC
Q 042875          283 AGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLP  362 (432)
Q Consensus       283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~  362 (432)
                      ++|.+..+|........|+.+.+++|........  ...+..+..+.+.++++..++..++.+++++.|++++|.++.++
T Consensus       194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             cCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence            5555555555444444455555555531111111  22344455555555555554555555566666666666666555


Q ss_pred             hhccCCCCCCeeeccCCCCCc
Q 042875          363 ASIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       363 ~~~~~l~~L~~L~l~~~~~~~  383 (432)
                      . ++...++++++++++.+..
T Consensus       272 ~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         272 S-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             c-ccccCccCEEeccCccccc
Confidence            4 5556666666666655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.92  E-value=2e-10  Score=105.65  Aligned_cols=194  Identities=27%  Similarity=0.400  Sum_probs=153.6

Q ss_pred             CCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeec
Q 042875          180 TDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVS  259 (432)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  259 (432)
                      ..-...+++.|++. .+|..+..+-.|+.+.++.|.+ ..+|..++.+..|.+++++.|+++.+|..+..++ |+.|-++
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence            33445567776643 4565566677788888877544 4577888999999999999999999998888877 8888888


Q ss_pred             CCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCc
Q 042875          260 DCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP  339 (432)
Q Consensus       260 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  339 (432)
                      +|+ ...+|..++..+.|..++.+.|.+..+|..++.+.+|+.|.+..|.+. ++|.+.. .+ .|..||++.|++..+|
T Consensus       152 NNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~L-pLi~lDfScNkis~iP  227 (722)
T KOG0532|consen  152 NNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SL-PLIRLDFSCNKISYLP  227 (722)
T ss_pred             cCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CC-ceeeeecccCceeecc
Confidence            875 456788888899999999999999999999999999999999998744 4555443 33 4899999999999999


Q ss_pred             hhhhcCCCCCEEEeeCCCCcccChhc---cCCCCCCeeeccCCC
Q 042875          340 QEIAYLSSLKSLDLRGNNFESLPASI---KQLSRLCSLDLRRCN  380 (432)
Q Consensus       340 ~~~~~~~~L~~L~l~~n~l~~l~~~~---~~l~~L~~L~l~~~~  380 (432)
                      ..+..|..|++|-|.+|.++.-|..+   ++.+--++|+..-|+
T Consensus       228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            99999999999999999998666544   344555777777774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=1.4e-09  Score=102.79  Aligned_cols=192  Identities=22%  Similarity=0.335  Sum_probs=136.9

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccch-hhhcceeecCCCCCCCCC-CCCCCCCceee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYL-PEKLRYLHWDTYPLRILP-SNFKPKNLVEL   87 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l-~~~L~~L~l~~~~~~~l~-~~~~~~~L~~L   87 (432)
                      ++...+.. ..+...+..++.++.|++.++.+.       .++...... + +|+.|+++++.+..++ ....+++|+.|
T Consensus        98 l~~~~~~~-~~~~~~~~~~~~l~~L~l~~n~i~-------~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L  168 (394)
T COG4886          98 LDLNLNRL-RSNISELLELTNLTSLDLDNNNIT-------DIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNL  168 (394)
T ss_pred             eecccccc-ccCchhhhcccceeEEecCCcccc-------cCccccccchh-hcccccccccchhhhhhhhhcccccccc
Confidence            44444432 223356666788999999999988       456555544 2 8999999999998886 44588999999


Q ss_pred             eeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCC-CCCCceEEEecCcccccccC--CCCCCccEEEe
Q 042875           88 NLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNL-HFVCPVTINFSYCVTLIEFP--QISGKITRLYL  164 (432)
Q Consensus        88 ~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l  164 (432)
                      ++++|.+++        ++...+..+.|+.|++++|.. ..+|... ....|+++.+++|.......  ....++..+.+
T Consensus       169 ~l~~N~l~~--------l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l  239 (394)
T COG4886         169 DLSFNDLSD--------LPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLEL  239 (394)
T ss_pred             ccCCchhhh--------hhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhccccccccc
Confidence            999999876        444445888999999998654 4556543 45558999998885332222  23445666667


Q ss_pred             cccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccch
Q 042875          165 DQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFP  221 (432)
Q Consensus       165 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  221 (432)
                      .++.+...+..++.++.++.|++++|..... +. +....+++.|+++++......+
T Consensus       240 ~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         240 SNNKLEDLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             CCceeeeccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence            7777777778888888899999999875543 33 7778899999999876655444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=1.6e-09  Score=87.81  Aligned_cols=56  Identities=16%  Similarity=0.196  Sum_probs=10.8

Q ss_pred             hcceeecCCCCCCCCCCCC-CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCcc
Q 042875           61 KLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKS  125 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (432)
                      .+++|+|+++.++.+.... .+.+|+.|++++|.++.+         +.+..+++|+.|++++|..
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l---------~~l~~L~~L~~L~L~~N~I   76 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL---------EGLPGLPRLKTLDLSNNRI   76 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S-----------TT----TT--EEE--SS--
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCccc---------cCccChhhhhhcccCCCCC
Confidence            4566666666665555443 455666666666665542         1234455555555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.88  E-value=8.7e-11  Score=104.05  Aligned_cols=277  Identities=18%  Similarity=0.173  Sum_probs=138.6

Q ss_pred             cchhhhcceeecCCCCCCCCCCC---C-CCCCceeeeecccc-ccccCCCcccccCCcccCcccCceEeccCCccCCcCC
Q 042875           56 EYLPEKLRYLHWDTYPLRILPSN---F-KPKNLVELNLRFSK-VEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP  130 (432)
Q Consensus        56 ~~l~~~L~~L~l~~~~~~~l~~~---~-~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  130 (432)
                      .++-..|+.|.++++.-......   . +++++++|++.++. +++   ..   .-..=..+++|+++++..|..++...
T Consensus       134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd---~s---~~sla~~C~~l~~l~L~~c~~iT~~~  207 (483)
T KOG4341|consen  134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD---SS---LLSLARYCRKLRHLNLHSCSSITDVS  207 (483)
T ss_pred             hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH---HH---HHHHHHhcchhhhhhhcccchhHHHH
Confidence            33334688888888843222222   2 88888888888775 221   11   11112367888888888877665432


Q ss_pred             ---CCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeecccccccc--ccchhcCCCC
Q 042875          131 ---SNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKR--ISTRFCKLRS  205 (432)
Q Consensus       131 ---~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~  205 (432)
                         -...|++|++|++++|.....               +   .+..-..++..++.+...+|...+.  +...-..+..
T Consensus       208 Lk~la~gC~kL~~lNlSwc~qi~~---------------~---gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~  269 (483)
T KOG4341|consen  208 LKYLAEGCRKLKYLNLSWCPQISG---------------N---GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE  269 (483)
T ss_pred             HHHHHHhhhhHHHhhhccCchhhc---------------C---cchHHhccchhhhhhhhcccccccHHHHHHHhccChH
Confidence               244589999999999875532               1   1111222333445554555533221  1111123444


Q ss_pred             ccEEEecCccCcccch--HhhhcCCCCCeeeeccc-ccccc--CcccCCCCCccEEeecCCCCCCcccc-c-cCCccccc
Q 042875          206 LVDLFVNGCLNLERFP--EILEKMEHLKRINLDGT-AITEL--PSSFENLPGLEELFVSDCSKLDKLPD-N-IGNLESLR  278 (432)
Q Consensus       206 L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~-~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~-~-~~~l~~L~  278 (432)
                      +.++++..|....+..  ..-..+..|+.+..++. .+++.  -..-..+.+|+.+.+..|...++... . -.++++|+
T Consensus       270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le  349 (483)
T KOG4341|consen  270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE  349 (483)
T ss_pred             hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence            5555555554443322  11224556666666552 33311  11123456777777777764332211 1 13456677


Q ss_pred             cccccccccc---ccCccccCCCCCcEEeccCCCCCCCCchhhh----cCCCCccEEEeeccCCCC--CchhhhcCCCCC
Q 042875          279 HISAAGSAIS---QLPSSVADSNALLILDFSRCKGLVSLPRSLL----LGLSSLGLLYIMNCAVME--IPQEIAYLSSLK  349 (432)
Q Consensus       279 ~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~  349 (432)
                      .+++..+...   .+.....+++.++++.++.|..+++.....+    .+...++.+.+++|..++  ....+..+++|+
T Consensus       350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le  429 (483)
T KOG4341|consen  350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE  429 (483)
T ss_pred             hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence            7776665433   2334445566666666666654444322111    123344444444444333  222334444444


Q ss_pred             EEEeeCC
Q 042875          350 SLDLRGN  356 (432)
Q Consensus       350 ~L~l~~n  356 (432)
                      .+++-++
T Consensus       430 ri~l~~~  436 (483)
T KOG4341|consen  430 RIELIDC  436 (483)
T ss_pred             eeeeech
Confidence            4444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=5.2e-11  Score=100.90  Aligned_cols=174  Identities=18%  Similarity=0.209  Sum_probs=125.8

Q ss_pred             CCCCeeeecccccc--ccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccc-ccc--ccCccccCCCCCcE
Q 042875          228 EHLKRINLDGTAIT--ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS-AIS--QLPSSVADSNALLI  302 (432)
Q Consensus       228 ~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~  302 (432)
                      +.+|++++++..++  .+-..+..|.+|+.|.+.++...+.+...++.-.+|+.++++.+ +++  ...-.+.+|+.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            35888888887777  44455677889999999998888877777888888999998876 454  34445788899999


Q ss_pred             EeccCCCCCCCCchhhhc-CCCCccEEEeeccCCC----CCchhhhcCCCCCEEEeeCC-CCc-ccChhccCCCCCCeee
Q 042875          303 LDFSRCKGLVSLPRSLLL-GLSSLGLLYIMNCAVM----EIPQEIAYLSSLKSLDLRGN-NFE-SLPASIKQLSRLCSLD  375 (432)
Q Consensus       303 L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~n-~l~-~l~~~~~~l~~L~~L~  375 (432)
                      |++++|....+.-..... --.+|+.|+++|+.-.    .+......||+|..||+++| .++ .....+-+++.|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            999998765543222222 2367899999987422    24444578999999999987 344 4445667899999999


Q ss_pred             ccCCCCCccc---C-CCCCCccEEeccCCC
Q 042875          376 LRRCNMLQSL---P-ALPLCLKYLHLTGCN  401 (432)
Q Consensus       376 l~~~~~~~~~---~-~~~~~L~~L~l~~c~  401 (432)
                      +++|-.+..-   . ...++|.+|++.+|-
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            9998753211   0 234689999998874

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.81  E-value=2.3e-10  Score=101.42  Aligned_cols=252  Identities=19%  Similarity=0.256  Sum_probs=161.5

Q ss_pred             cccCCCCCCEEeecccccccc--ccchhcCCCCccEEEecCccCcccc--hHhhhcCCCCCeeeeccc-ccc--ccCccc
Q 042875          175 SIECLTDLEVLDLRDCKRLKR--ISTRFCKLRSLVDLFVNGCLNLERF--PEILEKMEHLKRINLDGT-AIT--ELPSSF  247 (432)
Q Consensus       175 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~-~~~--~~~~~~  247 (432)
                      ...+++++++|.+.+|...+.  ....-..|+.|+.+.+..|...++.  ......+++|++++++.+ +++  .+....
T Consensus       159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~  238 (483)
T KOG4341|consen  159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ  238 (483)
T ss_pred             HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence            445677888888888765442  1122345778888888776554432  122345778888887763 333  233334


Q ss_pred             CCCCCccEEeecCCCCCCc--cccccCCcccccccccccccc-c--ccCccccCCCCCcEEeccCCCCCCCCchh-hhcC
Q 042875          248 ENLPGLEELFVSDCSKLDK--LPDNIGNLESLRHISAAGSAI-S--QLPSSVADSNALLILDFSRCKGLVSLPRS-LLLG  321 (432)
Q Consensus       248 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~-~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~  321 (432)
                      ..+..++.+...+|...+.  +-..-..++.+.++++..+.. +  .+......+..|++++.+++...++.+.+ ...+
T Consensus       239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~  318 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH  318 (483)
T ss_pred             ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence            4555566666666643321  111113455566666555532 2  22233445678899999888766655543 3446


Q ss_pred             CCCccEEEeeccC-CCC--CchhhhcCCCCCEEEeeCCCCc---ccChhccCCCCCCeeeccCCCCCcccC--------C
Q 042875          322 LSSLGLLYIMNCA-VME--IPQEIAYLSSLKSLDLRGNNFE---SLPASIKQLSRLCSLDLRRCNMLQSLP--------A  387 (432)
Q Consensus       322 ~~~L~~L~l~~~~-~~~--~~~~~~~~~~L~~L~l~~n~l~---~l~~~~~~l~~L~~L~l~~~~~~~~~~--------~  387 (432)
                      .++|+.+.+++|+ ++.  +...-.+++.|+.+++.++...   .+...-.+++.|+.+.+++|..++.-.        .
T Consensus       319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c  398 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC  398 (483)
T ss_pred             CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence            7899999999986 333  2223357889999999998544   344445689999999999998766541        3


Q ss_pred             CCCCccEEeccCCCCccccCC----CCCccceecccccccccc
Q 042875          388 LPLCLKYLHLTGCNMLRSLPE----LPLCLQELDATNCNRLQS  426 (432)
Q Consensus       388 ~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~  426 (432)
                      ....|+.+.+.+|+.++...-    .++.|+++++.+|.+++.
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence            446799999999998875432    577899999999988843

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.78  E-value=1.5e-09  Score=92.25  Aligned_cols=129  Identities=22%  Similarity=0.214  Sum_probs=84.2

Q ss_pred             CCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875          250 LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY  329 (432)
Q Consensus       250 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (432)
                      +..|+++++++|.+. .+.+...-.|.++.|++++|.+..+.. +..+++|+.||+++|.+.. +..+ -..+.++++|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-~~Gw-h~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-CVGW-HLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh-hhhh-HhhhcCEeeee
Confidence            345666666665332 233334445666777777776664433 5566777777777766332 2211 12567788888


Q ss_pred             eeccCCCCCchhhhcCCCCCEEEeeCCCCcccC--hhccCCCCCCeeeccCCCCCc
Q 042875          330 IMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       330 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~  383 (432)
                      +++|.+.++. .++.+-+|..||+++|+|..+.  ..+++++-|+.+.+.+|++..
T Consensus       359 La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            8888777653 3667778889999999888443  567888888888888888644

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=5.9e-10  Score=94.62  Aligned_cols=176  Identities=22%  Similarity=0.213  Sum_probs=110.6

Q ss_pred             CCCEEeeccccccc-cccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc-cccc--ccCcccCCCCCccEE
Q 042875          181 DLEVLDLRDCKRLK-RISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG-TAIT--ELPSSFENLPGLEEL  256 (432)
Q Consensus       181 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~--~~~~~~~~l~~L~~L  256 (432)
                      .++++|+++..+.. .+...+..|.+|+.|.+.+..+.+.+-..+....+|+.+++++ +.++  ...-.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46667776654432 2334455677777777777666666666666777777777776 3444  222345677777777


Q ss_pred             eecCCCCCCccccc-cCC-ccccccccccccccc----ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEe
Q 042875          257 FVSDCSKLDKLPDN-IGN-LESLRHISAAGSAIS----QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYI  330 (432)
Q Consensus       257 ~l~~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  330 (432)
                      .++-|......... +.+ -+.|+.|+++|+.-.    .+..-...++++.+||+++|.....-....+..++.|+++.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            77777554332111 111 267777888776322    333345678888888888887655544444557788888888


Q ss_pred             eccCCCC--CchhhhcCCCCCEEEeeCC
Q 042875          331 MNCAVME--IPQEIAYLSSLKSLDLRGN  356 (432)
Q Consensus       331 ~~~~~~~--~~~~~~~~~~L~~L~l~~n  356 (432)
                      +.|....  ....+...|+|.+|++.|+
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEeccc
Confidence            8886443  3334567788888888887

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.63  E-value=2.2e-09  Score=98.96  Aligned_cols=170  Identities=19%  Similarity=0.207  Sum_probs=120.4

Q ss_pred             eEeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCcee
Q 042875            7 GIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVE   86 (432)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~   86 (432)
                      +.+.|++.|+...+. ..+..+--|+.+.++.|.+.       .+|..+..+. .|.+++++.|.+..+|.....--|+.
T Consensus        77 t~~aDlsrNR~~elp-~~~~~f~~Le~liLy~n~~r-------~ip~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lpLkv  147 (722)
T KOG0532|consen   77 TVFADLSRNRFSELP-EEACAFVSLESLILYHNCIR-------TIPEAICNLE-ALTFLDLSSNQLSHLPDGLCDLPLKV  147 (722)
T ss_pred             hhhhhccccccccCc-hHHHHHHHHHHHHHHhccce-------ecchhhhhhh-HHHHhhhccchhhcCChhhhcCccee
Confidence            455677777655553 55666667777777777776       5677777773 77788888887777777775556777


Q ss_pred             eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCC--CccEEEe
Q 042875           87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISG--KITRLYL  164 (432)
Q Consensus        87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~L~~L~l  164 (432)
                      |-+++|+++.        +|..++....|..|+.+.|...+..+.+..+..|+.|++..|.+. ++|..+.  .|..|++
T Consensus       148 li~sNNkl~~--------lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDf  218 (722)
T KOG0532|consen  148 LIVSNNKLTS--------LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDF  218 (722)
T ss_pred             EEEecCcccc--------CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeec
Confidence            8888887754        666677777788888888766655556777777888887777655 3444333  4667777


Q ss_pred             cccccccccccccCCCCCCEEeeccccccc
Q 042875          165 DQSAIEEVPSSIECLTDLEVLDLRDCKRLK  194 (432)
Q Consensus       165 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  194 (432)
                      ++|++..+|..|.+|++|++|.+.+|.+..
T Consensus       219 ScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  219 SCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             ccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            788888888888888888888888776543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.50  E-value=8.6e-08  Score=63.71  Aligned_cols=59  Identities=36%  Similarity=0.540  Sum_probs=43.0

Q ss_pred             CCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccCCCC
Q 042875          323 SSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~  381 (432)
                      ++|++|++++|++..++. .+..+++|++|++++|.++.++ ..+..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            357777777777777653 5677788888888888877654 4567788888888887763

...

>PLN03150 hypothetical protein; Provisional

Probab=98.47  E-value=6.8e-07  Score=88.72  Aligned_cols=107  Identities=25%  Similarity=0.319  Sum_probs=77.9

Q ss_pred             CcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeecc
Q 042875          300 LLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLR  377 (432)
Q Consensus       300 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~  377 (432)
                      ++.|++++|.+.+.++.. +..+++|+.|++++|.+.. +|..++.+++|+.|++++|+++ .+|..++.+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            667777777776666665 4467788888888888775 7777888888888888888887 677778888888888888


Q ss_pred             CCCCCcccCCCC----CCccEEeccCCCCccccC
Q 042875          378 RCNMLQSLPALP----LCLKYLHLTGCNMLRSLP  407 (432)
Q Consensus       378 ~~~~~~~~~~~~----~~L~~L~l~~c~~l~~l~  407 (432)
                      +|.+.+.+|..+    ..+..+++.+|+.+...|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            888777777432    345567777766554433

>PLN03150 hypothetical protein; Provisional

Probab=98.41  E-value=9.9e-07  Score=87.60  Aligned_cols=108  Identities=26%  Similarity=0.389  Sum_probs=91.3

Q ss_pred             CccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccCC---CCCCccEEecc
Q 042875          324 SLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPA---LPLCLKYLHLT  398 (432)
Q Consensus       324 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~  398 (432)
                      .++.|++++|.+.. +|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|++.+.+|.   .+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999987 8999999999999999999998 8898999999999999999999988885   45789999999


Q ss_pred             CCCCccccCC----CCCccceeccccccccccCCCCC
Q 042875          399 GCNMLRSLPE----LPLCLQELDATNCNRLQSLPEIP  431 (432)
Q Consensus       399 ~c~~l~~l~~----~~~~L~~L~l~~c~~l~~lp~~p  431 (432)
                      +|..-..+|.    ....+..+++.+++.+...|.++
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~  535 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR  535 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCC
Confidence            9876667775    23456688888887777666544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.31  E-value=8e-07  Score=59.00  Aligned_cols=56  Identities=27%  Similarity=0.354  Sum_probs=23.5

Q ss_pred             ccEEEecccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCc
Q 042875          159 ITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGC  214 (432)
Q Consensus       159 L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  214 (432)
                      ++.|++.+|.+..++. .+..+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3444444444444442 3334444444444444433333333444444444444443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.31  E-value=1.4e-07  Score=79.39  Aligned_cols=87  Identities=20%  Similarity=0.207  Sum_probs=47.5

Q ss_pred             CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCc------------CCCCCCCCCceEEEecCcc
Q 042875           80 KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS------------FPSNLHFVCPVTINFSYCV  147 (432)
Q Consensus        80 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~~~~~L~~L~l~~~~  147 (432)
                      .+..++++++|+|.+..-....   ++..+.+-.+|+..+++. .+++.            ++.+.+||+|+..+++.|-
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~---l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEE---LCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHH---HHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            3456667777777665321112   334455566677776665 22221            2345567777777777776


Q ss_pred             cccccCCC-------CCCccEEEecccccc
Q 042875          148 TLIEFPQI-------SGKITRLYLDQSAIE  170 (432)
Q Consensus       148 ~~~~~~~~-------~~~L~~L~l~~~~~~  170 (432)
                      +....+.-       -..+.+|.+.+|+.+
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            66554432       224555555555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.26  E-value=1e-07  Score=90.32  Aligned_cols=149  Identities=20%  Similarity=0.194  Sum_probs=65.6

Q ss_pred             CCCccEEEeccccccccccc-ccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCC--CCCe
Q 042875          156 SGKITRLYLDQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKME--HLKR  232 (432)
Q Consensus       156 ~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~  232 (432)
                      +..++.+++.+|.+..+... ...+.+++.+.+.++.....-.  +..+..+..+.+..+.+...-+  +....  .|+.
T Consensus       161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~  236 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRE  236 (414)
T ss_pred             chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHH
Confidence            34444444444444443332 3445566666666654332111  1112222222333332221110  11111  2666


Q ss_pred             eeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccc---cc-Cc-cccCCCCCcEEeccC
Q 042875          233 INLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS---QL-PS-SVADSNALLILDFSR  307 (432)
Q Consensus       233 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~-~~-~~~~~~~L~~L~l~~  307 (432)
                      +.++++.+...+..+..++.+..+++.++.....-  .+...+.+..+...++.+.   .. .. .....+.++...+..
T Consensus       237 l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (414)
T KOG0531|consen  237 LYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLEL  314 (414)
T ss_pred             HhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccccccc
Confidence            66777666655455566666777777665543321  1223344444444444433   11 11 133445556666655


Q ss_pred             CCC
Q 042875          308 CKG  310 (432)
Q Consensus       308 ~~~  310 (432)
                      +..
T Consensus       315 ~~~  317 (414)
T KOG0531|consen  315 NPI  317 (414)
T ss_pred             Ccc
Confidence            553

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.25  E-value=5.5e-06  Score=75.86  Aligned_cols=159  Identities=24%  Similarity=0.360  Sum_probs=90.3

Q ss_pred             cCCCCCccEEeecCCCCCCccccccCCcccccccccccc-cccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCc
Q 042875          247 FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS-AISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSL  325 (432)
Q Consensus       247 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  325 (432)
                      +..+.+++.|++++|. ...+|. +  ..+|++|.++++ .+..+|..+  .++|++|++++|.....+|       ..|
T Consensus        48 ~~~~~~l~~L~Is~c~-L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCD-IESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCC-CcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------ccc
Confidence            3446788899999884 344452 2  246888888764 344555433  2578888888875444333       457


Q ss_pred             cEEEeeccCCCCCchhhhcCCCCCEEEeeCCC-Cc--ccChhccCCCCCCeeeccCCCCCcccCCCCCCccEEeccCCCC
Q 042875          326 GLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNN-FE--SLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNM  402 (432)
Q Consensus       326 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~  402 (432)
                      +.|++..+....++.   -+++|+.|.+.+++ ..  .+|..  -.++|++|++.+|......+..+.+|+.|.+..+..
T Consensus       115 e~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~  189 (426)
T PRK15386        115 RSLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQK  189 (426)
T ss_pred             ceEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEeccccc
Confidence            777776655433211   12356677765432 11  12211  125788888888876543334566888888876431


Q ss_pred             cc-ccC--CCCCccceecccccccc
Q 042875          403 LR-SLP--ELPLCLQELDATNCNRL  424 (432)
Q Consensus       403 l~-~l~--~~~~~L~~L~l~~c~~l  424 (432)
                      .. .++  ..++++ .|++.+|-.+
T Consensus       190 ~sLeI~~~sLP~nl-~L~f~n~lkL  213 (426)
T PRK15386        190 TTWNISFEGFPDGL-DIDLQNSVLL  213 (426)
T ss_pred             ccccCccccccccc-Eechhhhccc
Confidence            11 111  144556 7777776443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.17  E-value=3.6e-08  Score=93.73  Aligned_cols=122  Identities=21%  Similarity=0.181  Sum_probs=96.0

Q ss_pred             EeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC--CCCCce
Q 042875            8 IFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF--KPKNLV   85 (432)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~   85 (432)
                      .+.++++|.+..++ .++.-++.|+.|||+.|++++       .. .+.+++ .|+.|+|+.|.++.+|...  .|. |.
T Consensus       167 ~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~-------v~-~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  167 ATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTK-------VD-NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCK-LQ  235 (1096)
T ss_pred             hhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhh-------hH-HHHhcc-cccccccccchhccccccchhhhh-he
Confidence            34677888776665 789999999999999999985       22 677887 9999999999999988876  554 99


Q ss_pred             eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCC--cCCCCCCCCCceEEEecCcccc
Q 042875           86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR--SFPSNLHFVCPVTINFSYCVTL  149 (432)
Q Consensus        86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~  149 (432)
                      .|.+++|.++.+         ..+.++.+|+.||+++|-+..  ++.++..+..|+.|.+.+|..-
T Consensus       236 ~L~lrnN~l~tL---------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  236 LLNLRNNALTTL---------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeecccHHHhh---------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            999999998753         235789999999999976544  3446666778888888888543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=9.2e-07  Score=75.59  Aligned_cols=208  Identities=18%  Similarity=0.215  Sum_probs=115.0

Q ss_pred             CCCCCEEeecccccccc--ccchhcCCCCccEEEecCccCcc--cchHhhhcCCCCCeeeeccccccccCccc-CCCCCc
Q 042875          179 LTDLEVLDLRDCKRLKR--ISTRFCKLRSLVDLFVNGCLNLE--RFPEILEKMEHLKRINLDGTAITELPSSF-ENLPGL  253 (432)
Q Consensus       179 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L  253 (432)
                      ...++.+.+.+|.+...  ....-..+..++++++.+|.+..  ++...+.+++.|+.|+++.|.+..--..+ ....+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            33444555555544322  11212346777888888876553  24445567888888888887776221122 234567


Q ss_pred             cEEeecCCCCCCcc-ccccCCccccccccccccccccc----CccccCCCCCcEEeccCCCCCCCCch-hhhcCCCCccE
Q 042875          254 EELFVSDCSKLDKL-PDNIGNLESLRHISAAGSAISQL----PSSVADSNALLILDFSRCKGLVSLPR-SLLLGLSSLGL  327 (432)
Q Consensus       254 ~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~  327 (432)
                      +.|.+.+....... ...+..+|.++++.++.|....+    ...-.+.+.++.++...|....-... ....-++++..
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            77777776543221 12234566777777777643311    11111223455555555432110000 01124677888


Q ss_pred             EEeeccCCCCCc--hhhhcCCCCCEEEeeCCCCcccC--hhccCCCCCCeeeccCCCCCcccC
Q 042875          328 LYIMNCAVMEIP--QEIAYLSSLKSLDLRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQSLP  386 (432)
Q Consensus       328 L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~  386 (432)
                      +.+..|.+.+..  .....+|.+-.|+++.++|....  +.+.++++|..|.+.++++...+.
T Consensus       204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            888777666522  22345567777888888777332  456778888888888888766654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.16  E-value=3.5e-07  Score=86.68  Aligned_cols=231  Identities=17%  Similarity=0.132  Sum_probs=143.6

Q ss_pred             cCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeecc
Q 042875           12 LSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRF   91 (432)
Q Consensus        12 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~   91 (432)
                      +..|.+..+ ...+..+..|+.|++.+|+|..       +...+..++ +|++|++++|.++.+.....++.|+.|++++
T Consensus        79 l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~-------i~~~l~~~~-~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   79 LRQNLIAKI-LNHLSKLKSLEALDLYDNKIEK-------IENLLSSLV-NLQVLDLSFNKITKLEGLSTLTLLKELNLSG  149 (414)
T ss_pred             cchhhhhhh-hcccccccceeeeeccccchhh-------cccchhhhh-cchheeccccccccccchhhccchhhheecc
Confidence            344434432 2447888999999999999984       333367786 9999999999999999888888899999999


Q ss_pred             ccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC--CCCCCCceEEEecCcccccccC-CCCCCccEEEecccc
Q 042875           92 SKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINFSYCVTLIEFP-QISGKITRLYLDQSA  168 (432)
Q Consensus        92 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~  168 (432)
                      |.++.+         ..+..++.|+.+++++|.... +..  ...+..++.+.+..|.+...-. .....+..+++..+.
T Consensus       150 N~i~~~---------~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  150 NLISDI---------SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             Ccchhc---------cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhccccc
Confidence            998853         235568899999999976543 333  5778899999998886553222 223334444566666


Q ss_pred             cccccccccCCC--CCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccc---c
Q 042875          169 IEEVPSSIECLT--DLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITE---L  243 (432)
Q Consensus       169 ~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~  243 (432)
                      +..+.. +....  +|+.+++.+++.... +..+..+..+..+++..+.....  ..+.....+..+....+.+..   .
T Consensus       220 i~~~~~-l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  295 (414)
T KOG0531|consen  220 ISKLEG-LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI  295 (414)
T ss_pred             ceeccC-cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence            554322 22223  378888888765432 23455567777777776544322  112222333333333333331   1


Q ss_pred             -C-cccCCCCCccEEeecCCCCCC
Q 042875          244 -P-SSFENLPGLEELFVSDCSKLD  265 (432)
Q Consensus       244 -~-~~~~~l~~L~~L~l~~~~~~~  265 (432)
                       . ......+.++.+.+..++...
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  296 SQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hccccccccccccccccccCcccc
Confidence             1 113344556666666655443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.15  E-value=1.9e-06  Score=72.72  Aligned_cols=107  Identities=21%  Similarity=0.149  Sum_probs=65.6

Q ss_pred             cCCCCCcEEeccCCCCCCCC---chhhhcCCCCccEEEeeccCCCC------CchhhhcCCCCCEEEeeCCCCcc-----
Q 042875          295 ADSNALLILDFSRCKGLVSL---PRSLLLGLSSLGLLYIMNCAVME------IPQEIAYLSSLKSLDLRGNNFES-----  360 (432)
Q Consensus       295 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~n~l~~-----  360 (432)
                      .+-|.|+.+....|++-..-   ....+.+-..|+++.+..|.|..      +...+..+.+|+.|++.+|-++.     
T Consensus       154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~  233 (388)
T COG5238         154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY  233 (388)
T ss_pred             ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence            34567888887777643321   11222233578888888888875      12234567888888888887762     


Q ss_pred             cChhccCCCCCCeeeccCCCCCcccC---------CCCCCccEEeccCCC
Q 042875          361 LPASIKQLSRLCSLDLRRCNMLQSLP---------ALPLCLKYLHLTGCN  401 (432)
Q Consensus       361 l~~~~~~l~~L~~L~l~~~~~~~~~~---------~~~~~L~~L~l~~c~  401 (432)
                      +...+...+.|++|.+.+|-+...-.         ...+.|..|...++.
T Consensus       234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence            22334455668888888887654332         123566666666653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.13  E-value=2.6e-08  Score=94.63  Aligned_cols=179  Identities=23%  Similarity=0.204  Sum_probs=107.1

Q ss_pred             cccccCCCCCCEEeeccccccccccchhcCC-CCccEEEecCcc---------CcccchHhhhcCCCCCeeeeccccccc
Q 042875          173 PSSIECLTDLEVLDLRDCKRLKRISTRFCKL-RSLVDLFVNGCL---------NLERFPEILEKMEHLKRINLDGTAITE  242 (432)
Q Consensus       173 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~---------~~~~~~~~l~~l~~L~~L~l~~~~~~~  242 (432)
                      |-.+..+.+|++|.+++|.+....  .+..+ -+|++|.-.+..         -.+++...+. -..|...+++.|.+..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLVL  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHHh
Confidence            556778889999999998765411  11111 233443332210         0011111111 1246666777777776


Q ss_pred             cCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCC
Q 042875          243 LPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGL  322 (432)
Q Consensus       243 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  322 (432)
                      ...++.-++.++.|+++.|++...-  .+..+++|++||+++|++..+|..-..-..|..|.+++|...+-...   ..+
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gi---e~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGI---ENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhH---Hhh
Confidence            6666677788888888888776543  56778888888888888887765443334477777777764332222   255


Q ss_pred             CCccEEEeeccCCCCCc--hhhhcCCCCCEEEeeCCCCc
Q 042875          323 SSLGLLYIMNCAVMEIP--QEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       323 ~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~  359 (432)
                      .+|+.|++++|-+.+..  ..+..+..|+.|.|.||.+-
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            66777777777665511  12344556777777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=3.7e-06  Score=51.08  Aligned_cols=38  Identities=26%  Similarity=0.501  Sum_probs=19.2

Q ss_pred             CccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCccc
Q 042875          324 SLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESL  361 (432)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l  361 (432)
                      +|++|++++|+++++|..++.+++|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            35555555555555554455555555555555555543

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.07  E-value=2.3e-05  Score=71.82  Aligned_cols=32  Identities=34%  Similarity=0.391  Sum_probs=18.2

Q ss_pred             CCCCEEEeeCCCCcccChhccCCCCCCeeeccCC
Q 042875          346 SSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRC  379 (432)
Q Consensus       346 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~  379 (432)
                      ++|++|++++|....+|..+.  .+|+.|.++.+
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            466666666666554443332  46666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=1.7e-06  Score=74.03  Aligned_cols=197  Identities=16%  Similarity=0.102  Sum_probs=95.2

Q ss_pred             CCCCCEEeeccccccc--cccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc--ccCcccCCCCCcc
Q 042875          179 LTDLEVLDLRDCKRLK--RISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT--ELPSSFENLPGLE  254 (432)
Q Consensus       179 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~  254 (432)
                      +++++.+++.+|.+..  .+...+.++|.|+.|+++.|.+...+...-....+|+.+-+.+..+.  .....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3444555555544322  23333444555555555554443332111122345555555444433  2233344455555


Q ss_pred             EEeecCCCCCC---ccccccCCccccccccccccccc---ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEE
Q 042875          255 ELFVSDCSKLD---KLPDNIGNLESLRHISAAGSAIS---QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLL  328 (432)
Q Consensus       255 ~L~l~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  328 (432)
                      .|.++.|....   +-...-..-+.++++.+..|...   ..-....-++++..+.+..|+.-+.-....+..++.+-.|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            55555542210   00000001134444444444322   1112223356677777777764443333334455667778


Q ss_pred             EeeccCCCCCc--hhhhcCCCCCEEEeeCCCCcc-cC------hhccCCCCCCeee
Q 042875          329 YIMNCAVMEIP--QEIAYLSSLKSLDLRGNNFES-LP------ASIKQLSRLCSLD  375 (432)
Q Consensus       329 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~-l~------~~~~~l~~L~~L~  375 (432)
                      +++.++|..+.  .++..++.|+-|-++++.+.+ +-      -.++.+++++.|+
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            88888887733  456778888888888876651 11      1345666766663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=1.1e-05  Score=48.99  Aligned_cols=37  Identities=30%  Similarity=0.506  Sum_probs=32.3

Q ss_pred             CCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC
Q 042875          346 SSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML  382 (432)
Q Consensus       346 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~  382 (432)
                      ++|++|++++|+++.+|+.++++++|++|++++|++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            5799999999999999988999999999999999854

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.92  E-value=1.1e-05  Score=65.37  Aligned_cols=77  Identities=18%  Similarity=0.171  Sum_probs=36.6

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCC---CCCCCCCCCCcee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLR---ILPSNFKPKNLVE   86 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~---~l~~~~~~~~L~~   86 (432)
                      +|+++|.+.+.  ..|..+++|..|.+..|+|+.       +.+.+..+..+|..|.|++|++.   .+.....|++|++
T Consensus        47 iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~-------I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   47 IDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITR-------IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ecccccchhhc--ccCCCccccceEEecCCccee-------eccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            45555544444  355555555555555555552       23333332224555555555443   2222335555555


Q ss_pred             eeecccccc
Q 042875           87 LNLRFSKVE   95 (432)
Q Consensus        87 L~l~~~~l~   95 (432)
                      |.+-+|.++
T Consensus       118 Ltll~Npv~  126 (233)
T KOG1644|consen  118 LTLLGNPVE  126 (233)
T ss_pred             eeecCCchh
Confidence            555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.92  E-value=1.2e-06  Score=66.11  Aligned_cols=85  Identities=24%  Similarity=0.366  Sum_probs=64.7

Q ss_pred             CCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeee
Q 042875          296 DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLD  375 (432)
Q Consensus       296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~  375 (432)
                      ....|...++++|. ..++|..+...++.++.+++++|.+.++|..++.++.|+.|+++.|.+...|..+..+.++-.|+
T Consensus        51 ~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   51 KGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            33445555666655 34445544556778899999999999999999999999999999999998888887788888887


Q ss_pred             ccCCCC
Q 042875          376 LRRCNM  381 (432)
Q Consensus       376 l~~~~~  381 (432)
                      .-+|..
T Consensus       130 s~~na~  135 (177)
T KOG4579|consen  130 SPENAR  135 (177)
T ss_pred             CCCCcc
Confidence            777653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.80  E-value=8.6e-06  Score=80.92  Aligned_cols=80  Identities=18%  Similarity=0.326  Sum_probs=38.5

Q ss_pred             CCccEEEecCccCcc-cchHhhh-cCCCCCeeeecccccc--ccCcccCCCCCccEEeecCCCCCCccccccCCcccccc
Q 042875          204 RSLVDLFVNGCLNLE-RFPEILE-KMEHLKRINLDGTAIT--ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH  279 (432)
Q Consensus       204 ~~L~~L~l~~~~~~~-~~~~~l~-~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  279 (432)
                      .+|+.|+++|..... .++..++ .+|+|+.|.+.+..+.  ++.....++|+|..||+++++...-  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            456666665543221 2333333 2556666666554443  3334445555555566555544322  23445555555


Q ss_pred             cccccc
Q 042875          280 ISAAGS  285 (432)
Q Consensus       280 L~l~~~  285 (432)
                      |.+.+=
T Consensus       200 L~mrnL  205 (699)
T KOG3665|consen  200 LSMRNL  205 (699)
T ss_pred             HhccCC
Confidence            555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.71  E-value=9.7e-06  Score=80.57  Aligned_cols=150  Identities=20%  Similarity=0.252  Sum_probs=100.3

Q ss_pred             CCCCCeeeecccccc--ccCcc-cCCCCCccEEeecCCCCC-CccccccCCcccccccccccccccccCccccCCCCCcE
Q 042875          227 MEHLKRINLDGTAIT--ELPSS-FENLPGLEELFVSDCSKL-DKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLI  302 (432)
Q Consensus       227 l~~L~~L~l~~~~~~--~~~~~-~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~  302 (432)
                      -.+|++|++++...-  ..+.. -..+|+|+.|.+.+-.+. +++.....++|+|+.||++++++..+ ...+++++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            358999999885433  22222 246789999999986553 33444556789999999999999877 67888899999


Q ss_pred             EeccCCCCCC-CCchhhhcCCCCccEEEeeccCCCCCc---h----hhhcCCCCCEEEeeCCCCc-c-cChhccCCCCCC
Q 042875          303 LDFSRCKGLV-SLPRSLLLGLSSLGLLYIMNCAVMEIP---Q----EIAYLSSLKSLDLRGNNFE-S-LPASIKQLSRLC  372 (432)
Q Consensus       303 L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~---~----~~~~~~~L~~L~l~~n~l~-~-l~~~~~~l~~L~  372 (432)
                      |.+.+-.+.. ..-.. ...+++|+.||++.......+   .    .-..+|.|+.||.+++.+. . +...+..-++|+
T Consensus       200 L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HhccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            9888766544 22223 337899999999877655422   1    2235788999999888777 2 222333445555


Q ss_pred             eeeccC
Q 042875          373 SLDLRR  378 (432)
Q Consensus       373 ~L~l~~  378 (432)
                      .+..-+
T Consensus       279 ~i~~~~  284 (699)
T KOG3665|consen  279 QIAALD  284 (699)
T ss_pred             hhhhhh
Confidence            554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.68  E-value=8.8e-05  Score=60.19  Aligned_cols=131  Identities=13%  Similarity=-0.034  Sum_probs=88.5

Q ss_pred             cceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcc
Q 042875           30 NLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSI  109 (432)
Q Consensus        30 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  109 (432)
                      +=+.+++.+.++..        ...++..-.+...++|++|.+..++..-.++.|..|.+.+|.|+.+..+.       -
T Consensus        20 ~e~e~~LR~lkip~--------ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L-------~   84 (233)
T KOG1644|consen   20 RERELDLRGLKIPV--------IENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDL-------D   84 (233)
T ss_pred             cccccccccccccc--------hhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccch-------h
Confidence            34567777776652        12233333478888999998888888888889999999999998753221       2


Q ss_pred             cCcccCceEeccCCccC--CcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEee
Q 042875          110 QNFKYLSALSFEGCKSL--RSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDL  187 (432)
Q Consensus       110 ~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  187 (432)
                      .-+++|+.|.+.+|.+.  +++.++..||.|++|.+-+|.....-..-                 -..+..+|+|+.||+
T Consensus        85 ~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR-----------------~yvl~klp~l~~LDF  147 (233)
T KOG1644|consen   85 TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYR-----------------LYVLYKLPSLRTLDF  147 (233)
T ss_pred             hhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCce-----------------eEEEEecCcceEeeh
Confidence            35677899999887654  35667888889999988888755321110                 013445677888887


Q ss_pred             ccccc
Q 042875          188 RDCKR  192 (432)
Q Consensus       188 ~~~~~  192 (432)
                      .....
T Consensus       148 ~kVt~  152 (233)
T KOG1644|consen  148 QKVTR  152 (233)
T ss_pred             hhhhH
Confidence            76543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.55  E-value=8.4e-06  Score=79.34  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=17.8

Q ss_pred             CCCCCEEeecccccccc--ccchhcCCCCccEEEecC
Q 042875          179 LTDLEVLDLRDCKRLKR--ISTRFCKLRSLVDLFVNG  213 (432)
Q Consensus       179 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~  213 (432)
                      ++.|+.+.+.+|.....  .......+++|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            45555555555544333  223344555666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.23  E-value=2.6e-05  Score=59.09  Aligned_cols=16  Identities=25%  Similarity=0.617  Sum_probs=6.9

Q ss_pred             CCCeeeeccccccccC
Q 042875          229 HLKRINLDGTAITELP  244 (432)
Q Consensus       229 ~L~~L~l~~~~~~~~~  244 (432)
                      .|+..++++|.+..+|
T Consensus        54 el~~i~ls~N~fk~fp   69 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFP   69 (177)
T ss_pred             eEEEEecccchhhhCC
Confidence            3334444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=9.1e-06  Score=68.99  Aligned_cols=100  Identities=18%  Similarity=0.125  Sum_probs=73.9

Q ss_pred             cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCC
Q 042875           28 MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPS  107 (432)
Q Consensus        28 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  107 (432)
                      +.+.+.|+.-||.+.+|        ....++| .|+.|.|+-|.+.++.....|++|++|.|..|.|.++.  .    ..
T Consensus        18 l~~vkKLNcwg~~L~DI--------sic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sld--E----L~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--------SICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLD--E----LE   82 (388)
T ss_pred             HHHhhhhcccCCCccHH--------HHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHH--H----HH
Confidence            45677888888888753        2345676 89999999999999988889999999999999887542  1    12


Q ss_pred             cccCcccCceEeccCCccCCcCCC------CCCCCCceEEE
Q 042875          108 SIQNFKYLSALSFEGCKSLRSFPS------NLHFVCPVTIN  142 (432)
Q Consensus       108 ~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~L~~L~  142 (432)
                      .+.++++|++|+|..|.-.+.-+.      +-.+|+|+.|+
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            467889999999988877665432      22366776664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.03  E-value=9.5e-05  Score=71.96  Aligned_cols=131  Identities=29%  Similarity=0.308  Sum_probs=67.8

Q ss_pred             ccCCCCCcEEeccCCCCCCCCchh-hhcCCCCccEEEeeccC-CCC--CchhhhcCCCCCEEEeeCCCCc---ccChhcc
Q 042875          294 VADSNALLILDFSRCKGLVSLPRS-LLLGLSSLGLLYIMNCA-VME--IPQEIAYLSSLKSLDLRGNNFE---SLPASIK  366 (432)
Q Consensus       294 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~~L~~L~l~~n~l~---~l~~~~~  366 (432)
                      ...+++++.++++.+...++.... ....+++|+.|.+.+|. +++  +......+++|++|++++|...   .+.....
T Consensus       239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~  318 (482)
T KOG1947|consen  239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK  318 (482)
T ss_pred             hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence            344466666777666643333322 22236677777766666 444  4444566777777777777443   2333344


Q ss_pred             CCCCCCeeeccCCC---CCcccC-----CCC-CCccEEeccCCCCccccCC---CCCccc-eecccccccc
Q 042875          367 QLSRLCSLDLRRCN---MLQSLP-----ALP-LCLKYLHLTGCNMLRSLPE---LPLCLQ-ELDATNCNRL  424 (432)
Q Consensus       367 ~l~~L~~L~l~~~~---~~~~~~-----~~~-~~L~~L~l~~c~~l~~l~~---~~~~L~-~L~l~~c~~l  424 (432)
                      .+++++.+.+..+.   .++...     ... ..++.+.+.+|+.++.+.-   ...... .+.+.+|+.+
T Consensus       319 ~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  319 NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            56655555444333   222221     111 2455666666666554332   111222 5677777776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.51  E-value=0.002  Score=54.71  Aligned_cols=86  Identities=24%  Similarity=0.247  Sum_probs=44.1

Q ss_pred             cCCcccccccccccc--ccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCc----hhhh
Q 042875          271 IGNLESLRHISAAGS--AIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP----QEIA  343 (432)
Q Consensus       271 ~~~l~~L~~L~l~~~--~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~  343 (432)
                      +..+++|++|.+++|  ++. .++..+..+++|+++++++|+....-...-...+.+|..|++.+|..+.+-    ..+.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence            344556666666666  332 444455555666666666665322111111224456666666666655521    1244


Q ss_pred             cCCCCCEEEeeCC
Q 042875          344 YLSSLKSLDLRGN  356 (432)
Q Consensus       344 ~~~~L~~L~l~~n  356 (432)
                      .+++|++|+-...
T Consensus       141 ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  141 LLPSLKYLDGCDV  153 (260)
T ss_pred             Hhhhhcccccccc
Confidence            5566666655444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00019  Score=61.21  Aligned_cols=96  Identities=15%  Similarity=0.049  Sum_probs=68.0

Q ss_pred             ccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC---CCCCceee
Q 042875           11 DLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF---KPKNLVEL   87 (432)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~---~~~~L~~L   87 (432)
                      +.-+..+.++  ....+|+.|+.|.||.|+|..        ...+..+. +|++|+|+.|.+.++....   ++++||.|
T Consensus        25 Ncwg~~L~DI--sic~kMp~lEVLsLSvNkIss--------L~pl~rCt-rLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   25 NCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--------LAPLQRCT-RLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             cccCCCccHH--HHHHhcccceeEEeecccccc--------chhHHHHH-HHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            3344434444  455899999999999999974        44677885 9999999999998888775   89999999


Q ss_pred             eeccccccccCCCcccccCCcccCcccCceEe
Q 042875           88 NLRFSKVEQPWEGEKACVPSSIQNFKYLSALS  119 (432)
Q Consensus        88 ~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~  119 (432)
                      +|..|.-...  +....-...+.-+++|+.|+
T Consensus        94 WL~ENPCc~~--ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGE--AGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccc--cchhHHHHHHHHcccchhcc
Confidence            9998864321  11011112355677888775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.91  E-value=0.0045  Score=52.69  Aligned_cols=84  Identities=17%  Similarity=0.120  Sum_probs=56.9

Q ss_pred             hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccC--CcCCCCCCCCCc
Q 042875           61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL--RSFPSNLHFVCP  138 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L  138 (432)
                      .|+.|++.+..++++...-.+++|+.|.++.|.....  +.   ++.....+++|+++++++|.+.  +++.++..+++|
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~--~~---l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVS--GG---LEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCccccc--cc---ceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            6777777777777777777778888888888844321  12   3333445688888888887654  345566667778


Q ss_pred             eEEEecCcccc
Q 042875          139 VTINFSYCVTL  149 (432)
Q Consensus       139 ~~L~l~~~~~~  149 (432)
                      ..|++..|...
T Consensus       119 ~~Ldl~n~~~~  129 (260)
T KOG2739|consen  119 KSLDLFNCSVT  129 (260)
T ss_pred             hhhhcccCCcc
Confidence            88888777544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.89  E-value=0.039  Score=42.67  Aligned_cols=83  Identities=13%  Similarity=0.161  Sum_probs=31.9

Q ss_pred             cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC-cccCCCCCc
Q 042875          175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP-SSFENLPGL  253 (432)
Q Consensus       175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L  253 (432)
                      .+..+++|+.+.+.. .....-...|..+.+|+.+.+... ........+..+.+++.+.+.. .+..++ ..+..++++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            444555666666653 222222334555556666666542 2222223344454555555543 222222 233445555


Q ss_pred             cEEeecC
Q 042875          254 EELFVSD  260 (432)
Q Consensus       254 ~~L~l~~  260 (432)
                      +.+.+..
T Consensus        84 ~~i~~~~   90 (129)
T PF13306_consen   84 KNIDIPS   90 (129)
T ss_dssp             CEEEETT
T ss_pred             cccccCc
Confidence            5555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.77  E-value=0.004  Score=31.30  Aligned_cols=19  Identities=53%  Similarity=0.857  Sum_probs=11.0

Q ss_pred             CCEEEeeCCCCcccChhcc
Q 042875          348 LKSLDLRGNNFESLPASIK  366 (432)
Q Consensus       348 L~~L~l~~n~l~~l~~~~~  366 (432)
                      |++|++++|+++.+|+.++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5566666666665555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.54  E-value=0.061  Score=41.56  Aligned_cols=58  Identities=19%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             hcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC-cccCCCCCccEEeec
Q 042875          200 FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP-SSFENLPGLEELFVS  259 (432)
Q Consensus       200 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~  259 (432)
                      |..+.+|+.+.+.. .....-...+..+++++.+.+..+ +..++ ..+..+++++.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            44455555555543 122112223444445555555442 33221 223344444444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.96  E-value=0.018  Score=26.78  Aligned_cols=15  Identities=47%  Similarity=0.760  Sum_probs=5.8

Q ss_pred             CCCEEEeeCCCCccc
Q 042875          347 SLKSLDLRGNNFESL  361 (432)
Q Consensus       347 ~L~~L~l~~n~l~~l  361 (432)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            445555555554443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.92  E-value=0.0039  Score=50.91  Aligned_cols=77  Identities=19%  Similarity=0.289  Sum_probs=47.5

Q ss_pred             CCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcc-----cCCCCCCccEEeccCCCCccccCC----CCCccceec
Q 042875          348 LKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQS-----LPALPLCLKYLHLTGCNMLRSLPE----LPLCLQELD  417 (432)
Q Consensus       348 L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~  417 (432)
                      ++.++-+++.|. +--..+..+++++.|.+.+|.....     +....++|+.|+|++|+.+++-.-    .+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            455555555555 2224455666677777777765443     334556788888888887775432    566777777


Q ss_pred             ccccccc
Q 042875          418 ATNCNRL  424 (432)
Q Consensus       418 l~~c~~l  424 (432)
                      +++.+.+
T Consensus       183 l~~l~~v  189 (221)
T KOG3864|consen  183 LYDLPYV  189 (221)
T ss_pred             hcCchhh
Confidence            7776655

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.29  E-value=0.021  Score=28.64  Aligned_cols=13  Identities=23%  Similarity=0.245  Sum_probs=9.6

Q ss_pred             cceeeeecccccc
Q 042875           30 NLRLLKFYVPKFY   42 (432)
Q Consensus        30 ~L~~L~l~~~~i~   42 (432)
                      +|++||+++|+++
T Consensus         1 ~L~~Ldls~n~l~   13 (22)
T PF00560_consen    1 NLEYLDLSGNNLT   13 (22)
T ss_dssp             TESEEEETSSEES
T ss_pred             CccEEECCCCcCE
Confidence            4677788777776

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.38  E-value=0.00083  Score=64.12  Aligned_cols=86  Identities=22%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             cccccccccccccccc-----cCccccCCCC-CcEEeccCCCCCCCCchhh---hcCC-CCccEEEeeccCCCC-----C
Q 042875          274 LESLRHISAAGSAISQ-----LPSSVADSNA-LLILDFSRCKGLVSLPRSL---LLGL-SSLGLLYIMNCAVME-----I  338 (432)
Q Consensus       274 l~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~-----~  338 (432)
                      ..++++|++.++.+..     +...+...+. +..+++..|...+......   +..+ ..+++++++.|.+++     +
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            4556666666665441     1122333333 4556666665333212111   2222 455677777777665     4


Q ss_pred             chhhhcCCCCCEEEeeCCCCc
Q 042875          339 PQEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       339 ~~~~~~~~~L~~L~l~~n~l~  359 (432)
                      ...+..++.++.+.+..|.+.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccc
Confidence            445566667777777777665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.37  E-value=0.0021  Score=61.36  Aligned_cols=114  Identities=20%  Similarity=0.218  Sum_probs=72.5

Q ss_pred             ccCCccccccccccccccc-----ccCcccc----CCCCCcEEeccCCCCCCCCchh---hhcCCCC-ccEEEeeccCCC
Q 042875          270 NIGNLESLRHISAAGSAIS-----QLPSSVA----DSNALLILDFSRCKGLVSLPRS---LLLGLSS-LGLLYIMNCAVM  336 (432)
Q Consensus       270 ~~~~l~~L~~L~l~~~~~~-----~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~-L~~L~l~~~~~~  336 (432)
                      .+....+++.+++..|.+.     .++..+.    ...+++.|+++.|.........   .....+. +..+++..|.+.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            3444566666666666553     1222233    4677888999888755322211   1223334 666888888877


Q ss_pred             C-----CchhhhcC-CCCCEEEeeCCCCc-----ccChhccCCCCCCeeeccCCCCCc
Q 042875          337 E-----IPQEIAYL-SSLKSLDLRGNNFE-----SLPASIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       337 ~-----~~~~~~~~-~~L~~L~l~~n~l~-----~l~~~~~~l~~L~~L~l~~~~~~~  383 (432)
                      +     +...+..+ +.++.+++.+|.++     .+...+..++.++++.+..|.+..
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            5     33445555 67889999999887     345666778888889888887644

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.23  E-value=0.089  Score=27.56  Aligned_cols=16  Identities=31%  Similarity=0.625  Sum_probs=12.1

Q ss_pred             Cccceecccccccccc
Q 042875          411 LCLQELDATNCNRLQS  426 (432)
Q Consensus       411 ~~L~~L~l~~c~~l~~  426 (432)
                      +.|++|++++|+++++
T Consensus         2 ~~L~~L~l~~C~~itD   17 (26)
T smart00367        2 PNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCEeCCCCCCCcCH
Confidence            5678888888887765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.33  E-value=0.037  Score=45.43  Aligned_cols=63  Identities=21%  Similarity=0.200  Sum_probs=36.7

Q ss_pred             cccCCCCCcEEeccCCCCCCCCchhhhc-CCCCccEEEeeccC-CCC-CchhhhcCCCCCEEEeeC
Q 042875          293 SVADSNALLILDFSRCKGLVSLPRSLLL-GLSSLGLLYIMNCA-VME-IPQEIAYLSSLKSLDLRG  355 (432)
Q Consensus       293 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~  355 (432)
                      .+..++.++.|.+..|...++....... ..++|+.|++++|. |++ -...+..+++|+.|.+.+
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            3455566666777777666555544332 24667777777664 444 344556666666666655

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.86  E-value=0.15  Score=26.50  Aligned_cols=19  Identities=53%  Similarity=0.842  Sum_probs=14.0

Q ss_pred             CccceeccccccccccCCCC
Q 042875          411 LCLQELDATNCNRLQSLPEI  430 (432)
Q Consensus       411 ~~L~~L~l~~c~~l~~lp~~  430 (432)
                      ++|++|++++ ++++.+|++
T Consensus         2 ~~L~~L~vs~-N~Lt~LPeL   20 (26)
T smart00364        2 PSLKELNVSN-NQLTSLPEL   20 (26)
T ss_pred             cccceeecCC-CccccCccc
Confidence            4677778876 678788775

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.88  E-value=0.3  Score=25.46  Aligned_cols=19  Identities=42%  Similarity=0.742  Sum_probs=12.5

Q ss_pred             CCCCEEEeeCCCCcccChh
Q 042875          346 SSLKSLDLRGNNFESLPAS  364 (432)
Q Consensus       346 ~~L~~L~l~~n~l~~l~~~  364 (432)
                      ++|+.|++++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4667777777777766654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.88  E-value=0.3  Score=25.46  Aligned_cols=19  Identities=42%  Similarity=0.742  Sum_probs=12.5

Q ss_pred             CCCCEEEeeCCCCcccChh
Q 042875          346 SSLKSLDLRGNNFESLPAS  364 (432)
Q Consensus       346 ~~L~~L~l~~n~l~~l~~~  364 (432)
                      ++|+.|++++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4667777777777766654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.18  E-value=0.032  Score=46.78  Aligned_cols=94  Identities=12%  Similarity=0.154  Sum_probs=66.8

Q ss_pred             ecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeeeecccccc
Q 042875           17 CINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVE   95 (432)
Q Consensus        17 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~   95 (432)
                      ..++.-..++...+.+.||++.|+..       .+-..++.+. .+..|+++.+.+..+|..+ ....++.+++..|..+
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~v-------n~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~  101 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLV-------NLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS  101 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHH-------hhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh
Confidence            33444456777888889999888876       3444555564 7888888888777777776 5566777788877776


Q ss_pred             ccCCCcccccCCcccCcccCceEeccCCccC
Q 042875           96 QPWEGEKACVPSSIQNFKYLSALSFEGCKSL  126 (432)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (432)
                      .        .|..+++.++++.+++.++.+.
T Consensus       102 ~--------~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  102 Q--------QPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             h--------CCccccccCCcchhhhccCcch
Confidence            5        5666778888888777776543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.31  E-value=0.38  Score=24.48  Aligned_cols=16  Identities=19%  Similarity=0.208  Sum_probs=10.9

Q ss_pred             cccceeeeeccccccc
Q 042875           28 MSNLRLLKFYVPKFYE   43 (432)
Q Consensus        28 l~~L~~L~l~~~~i~~   43 (432)
                      +++|++|+|++|+|.+
T Consensus         1 ~~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    1 NPNLETLDLSNNQITD   16 (24)
T ss_dssp             -TT-SEEE-TSSBEHH
T ss_pred             CCCCCEEEccCCcCCH
Confidence            4788899999998875

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	432
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-05
3cvr_A	571	Crystal Structure Of The Full Length Ipah3 Length =		4e-05
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		3e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 24/221 (10%)
Query: 217 LERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLES 276
           L +FP+   ++ HL+   +D   + ELP + +   GLE L ++  + L  LP +I +L  
Sbjct: 93  LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNR 151
Query: 277 LRHIS-AAGSAISQLPSSVADSNALLILDFSRCKXXXXXXXXXXXXXXXXXXXYIMNCAV 335
           LR +S  A   +++LP  +A ++A                              +    +
Sbjct: 152 LRELSIRACPELTELPEPLASTDA----------------SGEHQGLVNLQSLRLEWTGI 195
Query: 336 MEIPQEIAYLSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPAL---PLCL 392
             +P  IA L +LKSL +R +   +L  +I                L++ P +      L
Sbjct: 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 393 KYLHLTGCNMLRSLP---ELPLCLQELDATNCNRLQSLPEI 430
           K L L  C+ L +LP        L++LD   C  L  LP +
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3 Length = 571

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 330 IMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALP 389
           I   A++ +P+  A L  L + D R +    LPAS+K             N L  LP LP
Sbjct: 87  ITQNALISLPELPASLEYLDACDNRLSTLPELPASLKH-------LDVDNNQLTXLPELP 139
Query: 390 LCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIP 431
             L+Y++    N L  LPELP  L+ L   N N+L  LPE+P
Sbjct: 140 ALLEYIN-ADNNQLTXLPELPTSLEVLSVRN-NQLTFLPELP 179

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 346 SSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPLCLKYLHLTGCNMLRS 405
           S L+ L +  N   SLP    +            N L SLPALP  LK L ++G N L S
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKELIVSG-NRLTS 235
Query: 406 LPELPLCLQELDATNCNRLQSLPEIPS 432
           LP LP  L+EL   + NRL SLP +PS
Sbjct: 236 LPVLPSELKEL-MVSGNRLTSLPMLPS 261

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	432
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-47
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  163 bits (415), Expect = 5e-47
 Identities = 69/336 (20%), Positives = 121/336 (36%), Gaps = 31/336 (9%)

Query: 108 SIQNFKYLSALSFEGCKSLRSFPSNLH-FVCPVTINFSYCVTLIEFPQISGKITRLYLDQ 166
              +      L F+G  +LR +   L  +      + +   +       +          
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQIETRTG 65

Query: 167 SAIEEVPSSIECLTD--LEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEIL 224
            A++     +E  T      L+LR    L +   +  +L  L  + ++    L   P+ +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTM 123

Query: 225 EKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAG 284
           ++   L+ + L    +  LP+S  +L  L EL +  C +L +LP+ + + ++        
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 285 SAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAY 344
           +              L  L       + SLP S+   L +L  L I N  +  +   I +
Sbjct: 184 N--------------LQSLRLEWTG-IRSLPASIAN-LQNLKSLKIRNSPLSALGPAIHH 227

Query: 345 LSSLKSLDLRGNN-FESLPASIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTG 399
           L  L+ LDLRG     + P      + L  L L+ C+ L +LP     L   L+ L L G
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRG 286

Query: 400 CNMLRSLPELP---LCLQELDATNCNRLQSLPEIPS 432
           C  L  LP L         +      + Q     P 
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (350), Expect = 1e-37
 Identities = 60/309 (19%), Positives = 109/309 (35%), Gaps = 32/309 (10%)

Query: 105 VPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQI-----SGKI 159
               +  ++           S      N +      I       L     +         
Sbjct: 28  YHDVLSQWQRHYNADRNRWHSAWRQA-NSNNP---QIETRTGRALKATADLLEDATQPGR 83

Query: 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER 219
             L L    + + P     L+ L+ + +     L  +     +   L  L +     L  
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRA 141

Query: 220 FPEILEKMEHLKRINLDGT-AITELPSSF---------ENLPGLEELFVSDCSKLDKLPD 269
            P  +  +  L+ +++     +TELP            + L  L+ L +   + +  LP 
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPA 200

Query: 270 NIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY 329
           +I NL++L+ +    S +S L  ++     L  LD   C  L + P     G + L  L 
Sbjct: 201 SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLI 259

Query: 330 IMNC-AVMEIPQEIAYLSSLKSLDLRGN-NFESLPASIKQLSRLCSLDLRRC-------N 380
           + +C  ++ +P +I  L+ L+ LDLRG  N   LP+ I QL   C + +          +
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

Query: 381 MLQSLPALP 389
              + PA P
Sbjct: 320 RPVARPAEP 328

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (300), Expect = 2e-30
 Identities = 59/258 (22%), Positives = 99/258 (38%), Gaps = 26/258 (10%)

Query: 51  LPNGLEYLP-EKLRYLHWDTYPLRILPSN-FKPKNLVELNLRFSKVEQPWEGEKACVPSS 108
             + LE         L   + PL   P   F+  +L  + +  + + +        +P +
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME--------LPDT 122

Query: 109 IQNFKYLSALSFEGCKSLRSFPSNL-HFVCPVTINFSYCVTLIEFPQISGKI-------- 159
           +Q F  L  L+      LR+ P+++        ++   C  L E P+             
Sbjct: 123 MQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 160 ----TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL 215
                 L L+ + I  +P+SI  L +L+ L +R+   L  +      L  L +L + GC 
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCT 240

Query: 216 NLERFPEILEKMEHLKRINL-DGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNL 274
            L  +P I      LKR+ L D + +  LP     L  LE+L +  C  L +LP  I  L
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 275 ESLRHISAAGSAISQLPS 292
            +   I       +QL  
Sbjct: 301 PANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (258), Expect = 9e-25
 Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 24/207 (11%)

Query: 240 ITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNA 299
           +        +  G E L+    + L    D +   +   +               A+SN 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNR---WHSAWRQANSN- 56

Query: 300 LLILDFSRCKGLVSLPRSL-LLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNF 358
              ++    + L +    L          L + +  + + P +   LS L+ + +     
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116

Query: 359 ESLPASIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCNMLRSLPE------ 408
             LP +++Q + L +L L R   L++LPA    L   L+ L +  C  L  LPE      
Sbjct: 117 MELPDTMQQFAGLETLTLARNP-LRALPASIASLN-RLRELSIRACPELTELPEPLASTD 174

Query: 409 ------LPLCLQELDATNCNRLQSLPE 429
                   + LQ L       ++SLP 
Sbjct: 175 ASGEHQGLVNLQSLRL-EWTGIRSLPA 200

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 40/200 (20%)

Query: 53  NGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNF 112
             L  LPE L               +    NL  L L ++ +          +P+SI N 
Sbjct: 161 PELTELPEPL-------ASTDASGEHQGLVNLQSLRLEWTGIRS--------LPASIANL 205

Query: 113 KYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYL-DQSAIEE 171
           + L +L       L +    +H +                     K+  L L   +A+  
Sbjct: 206 QNLKSLKIRNSP-LSALGPAIHHLP--------------------KLEELDLRGCTALRN 244

Query: 172 VPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLK 231
            P        L+ L L+DC  L  +     +L  L  L + GC+NL R P ++ ++    
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 232 RINLDGTAITELPSSFENLP 251
            I +      +L    ++ P
Sbjct: 305 IILVPPHLQAQLD---QHRP 321

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  120 bits (302), Expect = 2e-29
 Identities = 68/474 (14%), Positives = 132/474 (27%), Gaps = 85/474 (17%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLL-------KFYVPKFYE-----------IERFPMQL 51
           L L+        P A   ++ L++L             F +             R  M  
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 52  PNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQN 111
                   ++L         +   P     K    ++L+ +++          +  +IQ 
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN-LTNRITFISKAIQR 446

Query: 112 FKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEE 171
              L  + F                                                 E 
Sbjct: 447 LTKLQIIYFANSP------------------------FTYDNIAVDWEDANSDYAKQYEN 482

Query: 172 VPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNG---------CLNLERFPE 222
              S   L DL  ++L +C  + ++      L  L  L +             +  R  +
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 223 ILEKMEHLKRINLDGTAITELPSS--FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHI 280
             +    ++   +    + E P+S   + +  L  L      K+  L    G    L  +
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEA-FGTNVKLTDL 600

Query: 281 SAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLG-LSSLGLLYIMNCAVMEI 338
               + I ++P    A ++ +  L FS  K L  +P       +  +G +      +   
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 339 PQEI------AYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPALPLC 391
            + I          +  ++ L  N  +  P  +    S + ++ L   N++ S+P   L 
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL-SNNLMTSIPENSLK 718

Query: 392 -----------LKYLHLTGCNMLRSLP-ELPLC----LQELDATNCNRLQSLPE 429
                      L  + L   N L SL  +        L  +D +  N   S P 
Sbjct: 719 PKDGNYKNTYLLTTIDLRF-NKLTSLSDDFRATTLPYLSNMDVSY-NCFSSFPT 770

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (281), Expect = 1e-26
 Identities = 64/440 (14%), Positives = 129/440 (29%), Gaps = 91/440 (20%)

Query: 51  LPNGLEYLPE------KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKAC 104
           L N + ++ +      KL+ +++   P          ++      +  + E         
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--------- 483

Query: 105 VPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISG-KITRLY 163
              S  N K L+ +    C ++   P                  L     I+  +     
Sbjct: 484 -ELSWSNLKDLTDVELYNCPNMTQLPDF----------LYDLPELQSL-NIACNRGISAA 531

Query: 164 LDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRI--STRFCKLRSLVDLFVNGCLNLERFP 221
             ++    +    +    +++  +     L+    S    K+  L  L       +    
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLE 589

Query: 222 EILEKMEHLKRINLDGTAITELPSS-FENLPGLEELFVSDCSKLDKLPD--NIGNLESLR 278
                   L  + LD   I E+P         +E L  S   KL  +P+  N  ++  + 
Sbjct: 590 AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMG 647

Query: 279 HISAAGSAISQLPSSVADSNALL------ILDFSRCKGLVSLPRSLLLGLSSLGLLYIMN 332
            +  + + I     +++ S           +  S  + +   P  L    S +  + + N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSN 706

Query: 333 CAVMEIPQEIAY---------------------------------LSSLKSLDLRGNNFE 359
             +  IP+                                     L  L ++D+  N F 
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 360 SLPASIKQLSRLCSLDLRRC------NMLQSLPALPLC----LKYLHLTGCNMLRSLPEL 409
           S P      S+L +  +R         +L+  P   +     L  L + G N +R + E 
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQI-GSNDIRKVDEK 824

Query: 410 PLC-LQELDATNCNRLQSLP 428
               L  LD  + N   S+ 
Sbjct: 825 LTPQLYILDIAD-NPNISID 843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  109 bits (274), Expect = 9e-26
 Identities = 59/383 (15%), Positives = 115/383 (30%), Gaps = 54/383 (14%)

Query: 83  NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCK-SLRSFPSNLHFVCPVTI 141
            +  L+L     +         VP +I     L  LSF     ++         + P   
Sbjct: 324 RVTGLSLAGFGAKGR-------VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 142 NFSYCVTLIEFPQISG----KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCK------ 191
                   + + ++      ++    L Q AI   P     +     + L+D +      
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP-IKKDSRISLKDTQIGNLTN 435

Query: 192 RLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLP 251
           R+  IS    +L  L  ++             ++  +                 S+ NL 
Sbjct: 436 RITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQ---YENEELSWSNLK 491

Query: 252 GLEELFVSDCSKLDKLPDNIGNLESLRH----------ISAAGSAISQLPSSVADSNALL 301
            L ++ + +C  + +LPD + +L  L+            +   +  ++L         + 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 302 ILDFSRCKGLVSLPRSLLLG-LSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFES 360
           I        L   P S  L  +  LGLL  ++  V  +         L  L L  N  E 
Sbjct: 552 IFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEE 609

Query: 361 LPASI-KQLSRLCSLDLRRCNMLQSLPALPLC-----LKYLHLTGCNMLRSLPELPLC-- 412
           +P        ++  L     N L+ +P +        +  +  +  N + S      C  
Sbjct: 610 IPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSY-NKIGSEGRNISCSM 667

Query: 413 -------LQELDATNCNRLQSLP 428
                     +  +  N +Q  P
Sbjct: 668 DDYKGINASTVTLSY-NEIQKFP 689

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  107 bits (269), Expect = 4e-25
 Identities = 67/446 (15%), Positives = 128/446 (28%), Gaps = 77/446 (17%)

Query: 5   IEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRY 64
           ++    +    K    +  +++N+ +L  ++ Y                 +  LP+ L  
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELY-------------NCPNMTQLPDFLYD 513

Query: 65  LHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKAC--VPSSIQNFKYLSALSFEG 122
           L                  L  LN+  ++     + +     +         +       
Sbjct: 514 L----------------PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 123 CKSLRSFPSNLHFVCPV---TINFSYCVTLIEFPQISG--KITRLYLDQSAIEEVPSSI- 176
              L  FP++      V    ++  +   +          K+T L LD + IEE+P    
Sbjct: 558 NN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 177 ECLTDLEVLDLRDCKRLKRI--STRFCKLRSLVDLFVNGCLNLERFPEILE------KME 228
                +E L     K LK I        +  +  +  +    +      +       K  
Sbjct: 616 AFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGI 673

Query: 229 HLKRINLDGTAITELP-SSFENLPGLEELFVSDCS-------KLDKLPDNIGNLESLRHI 280
           +   + L    I + P   F     +  + +S+          L     N  N   L  I
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 281 SAAGSAISQLPSSVADSN--ALLILDFSRCKGLVSLPRSLLLGLSSLGLLYI-------M 331
               + ++ L      +    L  +D S      S P    L  S L    I        
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ-PLNSSQLKAFGIRHQRDAEG 791

Query: 332 NCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC 391
           N  + + P  I    SL  L +  N+   +   +    +L  LD+   N   S+    +C
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIAD-NPNISIDVTSVC 848

Query: 392 ------LKYLHLTGCNMLRSLPELPL 411
                 +  L       +R    L +
Sbjct: 849 PYIEAGMYVLLYDKTQDIRGCDALGI 874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 9e-13
 Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 24/234 (10%)

Query: 203 LRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCS 262
              +  L + G     R P+ + ++  LK ++    + T     F               
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG-------------- 367

Query: 263 KLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGL 322
             ++L  ++      R               +  S+ LL    +R   +  + +   + L
Sbjct: 368 -DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD-LLQDAINRNPEMKPIKKDSRISL 425

Query: 323 SSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML 382
               +  + N  +  I + I  L+ L+ +    + F     ++           +  N  
Sbjct: 426 KDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484

Query: 383 QSLPALPLCLKYLHLTGCNMLRSLPE----LPLCLQELDATNCNRLQSLPEIPS 432
            S   L   L  + L  C  +  LP+    LP  LQ L+    NR  S  ++ +
Sbjct: 485 LSWSNLKD-LTDVELYNCPNMTQLPDFLYDLP-ELQSLNIAC-NRGISAAQLKA 535

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 27/199 (13%), Positives = 68/199 (34%), Gaps = 16/199 (8%)

Query: 243 LPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSN-ALL 301
                +N   +  L ++      ++PD IG L  L+ +S    + +       D      
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 302 ILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLR------- 354
           + +  + +  +   +  L     L L  ++  A+   P E+  +     + L+       
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNL 433

Query: 355 GNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPE----LP 410
            N    +  +I++L++L  +     +       + +  +  +        +       L 
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFAN-SPFTYDN-IAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 411 LCLQELDATNCNRLQSLPE 429
             L +++  NC  +  LP+
Sbjct: 492 D-LTDVELYNCPNMTQLPD 509

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (286), Expect = 2e-27
 Identities = 71/273 (26%), Positives = 111/273 (40%), Gaps = 54/273 (19%)

Query: 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER 219
             L + +S +  +P  +     +  L + D   L  +     +LR+L ++  N    L  
Sbjct: 43  AVLNVGESGLTTLPDCL--PAHITTLVIPDN-NLTSLPALPPELRTL-EVSGN---QLTS 95

Query: 220 FPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH 279
            P +   +  L   +   T +  LPS       L +L++    +L  LP     L+ L  
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGN-QLTSLPVLPPGLQEL-- 146

Query: 280 ISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP 339
            S + + ++ LP+                              S L  L+  N  +  +P
Sbjct: 147 -SVSDNQLASLPAL----------------------------PSELCKLWAYNNQLTSLP 177

Query: 340 QEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTG 399
                 S L+ L +  N   SLP    +L +L + +    N L SLPALP  LK L ++G
Sbjct: 178 MLP---SGLQELSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKELIVSG 230

Query: 400 CNMLRSLPELPLCLQELDATNCNRLQSLPEIPS 432
            N L SLP LP  L+EL  +  NRL SLP +PS
Sbjct: 231 -NRLTSLPVLPSELKELMVSG-NRLTSLPMLPS 261

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (270), Expect = 2e-25
 Identities = 69/234 (29%), Positives = 87/234 (37%), Gaps = 27/234 (11%)

Query: 199 RFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFV 258
           R C       L V     L   P+ L    H+  + +    +T LP+    L     L V
Sbjct: 35  RACLNNGNAVLNVGES-GLTTLPDCLPA--HITTLVIPDNNLTSLPALPPEL---RTLEV 88

Query: 259 SDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSL 318
           S   +L  LP     L  L   S   + +  LPS       L  L     + L SLP   
Sbjct: 89  SGN-QLTSLPVLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQ-LTSLPVLP 140

Query: 319 LLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRR 378
                 L  L + +  +  +P      S L  L    N   SLP     L     L +  
Sbjct: 141 ----PGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPMLPSGLQ---ELSVSD 190

Query: 379 CNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS 432
            N L SLP LP  L  L     N L SLP LP  L+EL  +  NRL SLP +PS
Sbjct: 191 -NQLASLPTLPSELYKLWAYN-NRLTSLPALPSGLKELIVSG-NRLTSLPVLPS 241

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =   99 bits (249), Expect = 9e-23
 Identities = 61/312 (19%), Positives = 100/312 (32%), Gaps = 50/312 (16%)

Query: 149 LIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCK------RLKRISTRFCK 202
           L   P +  ++  L +  + +  +P     L +L +              L ++     +
Sbjct: 73  LTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ 132

Query: 203 LRSLVDLFVN------GCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEEL 256
           L SL  L             L   P +  ++  L         +T LP     L   +EL
Sbjct: 133 LTSLPVLPPGLQELSVSDNQLASLPALPSELCKL---WAYNNQLTSLPMLPSGL---QEL 186

Query: 257 FVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPR 316
            VSD  +L  LP     L  L   +   +++  LPS       L  L  S  + L SLP 
Sbjct: 187 SVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSG------LKELIVSGNR-LTSLPV 238

Query: 317 SLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDL 376
                 S L  L +    +  +P      S L SL +  N    LP S+  LS   +++L
Sbjct: 239 LP----SELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNL 291

Query: 377 R----------RCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCL-------QELDAT 419
                          + S P     +    + G +  R    L L         +E +  
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA 351

Query: 420 NCNRLQSLPEIP 431
             +R     +  
Sbjct: 352 PADRWHMFGQED 363

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (282), Expect = 3e-27
 Identities = 89/400 (22%), Positives = 156/400 (39%), Gaps = 66/400 (16%)

Query: 74  ILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNL 133
           I P N     L E     S + +        +P   +N K  +       +  R+ P   
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTE--------MPVEAENVKSKTEYYNAWSEWERNAPPGN 54

Query: 134 HFVCPVTIN-FSYCVT------------LIEFPQISGKITRLYLDQSAIEEVPSSIECLT 180
                + ++    C+             L   P++   +  L    +++ E+P   + L 
Sbjct: 55  GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLK 114

Query: 181 DLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI 240
            L V +      LK +S     L  L  +  N    LE+ PE+ +    LK I++D  ++
Sbjct: 115 SLLVDNNN----LKALSDLPPLLEYL-GVSNN---QLEKLPEL-QNSSFLKIIDVDNNSL 165

Query: 241 TELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS------- 293
            +LP      P LE +   +  +L++LP+ + NL  L  I A  +++ +LP         
Sbjct: 166 KKLPDL---PPSLEFIAAGNN-QLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESI 220

Query: 294 VADSNALLIL-DFSRCKGLVSLP------RSLLLGLSSLGLLYIMNCAVMEIPQEIAYLS 346
           VA +N L  L +      L ++       ++L     SL  L + +  + ++P+    L+
Sbjct: 221 VAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLT 280

Query: 347 SLKSLDLRGNNFESLPASIKQL--------------SRLCSLDLRRCNMLQSLPALPLCL 392
            L   +   +    LP ++  L                L  L++   N L  LPALP  L
Sbjct: 281 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPALPPRL 339

Query: 393 KYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS 432
           + L  +  N L  +PELP  L++L     N L+  P+IP 
Sbjct: 340 ERLIASF-NHLAEVPELPQNLKQLHVEY-NPLREFPDIPE 377

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (281), Expect = 4e-27
 Identities = 93/397 (23%), Positives = 143/397 (36%), Gaps = 60/397 (15%)

Query: 53  NGLEYLPE---KLRYLHWDTYPLRILPSNFKP-KNLVELNLRFSKVEQPWEGEKACVPSS 108
            GL  LPE    L  L      L  LP   +  K+L+  N     +              
Sbjct: 81  LGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL-----------SDL 129

Query: 109 IQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSA 168
               +YL          L   P   +      I+     +L + P +   +  +    + 
Sbjct: 130 PPLLEYLGV----SNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQ 184

Query: 169 IEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKME 228
           +EE+P  ++ L  L  +   +   LK++      L S+     N    LE  PE+ + + 
Sbjct: 185 LEELPE-LQNLPFLTAIYADNNS-LKKLPDLPLSLESI-VAGNN---ILEELPEL-QNLP 237

Query: 229 HLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS 288
            L  I  D   +  LP      P LE L V D   L  LP+   +L  L       S +S
Sbjct: 238 FLTTIYADNNLLKTLPDL---PPSLEALNVRDN-YLTDLPELPQSLTFLDVSENIFSGLS 293

Query: 289 QLPSSV----ADSNA----------LLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCA 334
           +LP ++    A SN           L  L+ S  K L+ LP         L  L      
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALP----PRLERLIASFNH 348

Query: 335 VMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKY 394
           + E+P+      +LK L +  N     P   + +      DLR  + L  +P LP  LK 
Sbjct: 349 LAEVPELP---QNLKQLHVEYNPLREFPDIPESVE-----DLRMNSHLAEVPELPQNLKQ 400

Query: 395 LHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIP 431
           LH+   N LR  P++P  +++L   N  R+    E  
Sbjct: 401 LHV-ETNPLREFPDIPESVEDLRM-NSERVVDPYEFA 435

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 61/359 (16%), Positives = 118/359 (32%), Gaps = 59/359 (16%)

Query: 53  NGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNF 112
             L  LP  L YL      L  LP       L  +++  + +++        +P    + 
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--------LPDLPPSL 175

Query: 113 KYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEV 172
           ++++A    G   L   P   +      I      +L + P +   +  +    + +EE+
Sbjct: 176 EFIAA----GNNQLEELPELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEEL 230

Query: 173 PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKR 232
           P  ++ L  L  +   +   LK +      L +L          L   PE+ + +  L  
Sbjct: 231 PE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRD----NYLTDLPELPQSLTFLDV 284

Query: 233 INLDGTAITELPSS--------------FENLPGLEELFVSDCSKLDKLPDNIGNLESLR 278
                + ++ELP +               +  P LEEL VS+  KL +LP     LE L 
Sbjct: 285 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERL- 342

Query: 279 HISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLP---------------RSLLLGLS 323
              A+ + ++++P    +   L  L       L   P                 +     
Sbjct: 343 --IASFNHLAEVPELPQN---LKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 324 SLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML 382
           +L  L++    + E P       S++ L +             + +     D+   +  
Sbjct: 397 NLKQLHVETNPLREFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 26/113 (23%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 336 MEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA-------- 387
           M I       + L+      +N   +P   + +              ++ P         
Sbjct: 1   MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 388 --------LPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS 432
                   L      L L     L SLPELP  L+ L A +CN L  LPE+P 
Sbjct: 61  AVSRLRDCLDRQAHELELNNLG-LSSLPELPPHLESLVA-SCNSLTELPELPQ 111

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (255), Expect = 2e-23
 Identities = 59/464 (12%), Positives = 136/464 (29%), Gaps = 63/464 (13%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYL-PEKLRYLHWD 68
           L L         P A   ++ L +L   +    E     +  P G+     ++ +     
Sbjct: 86  LSLEGFGASGRVPDAIGQLTELEVL--ALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 69  TYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS 128
            Y    +  + +      +    +   Q        +  S +     + +       +  
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKS-----IKKSSRITLKDTQIGQLSNN-ITF 197

Query: 129 FP------SNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDL 182
                   + L               + E    + +       Q   +      + L DL
Sbjct: 198 VSKAVMRLTKL-----RQFYMGNSPFVAENICEAWENENSEYAQQ-YKTEDLKWDNLKDL 251

Query: 183 EVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEI---------LEKMEHLKRI 233
             +++ +C  L ++ T    L  +  + V          ++             E ++ I
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALADAPVGEKIQII 310

Query: 234 NLDGTAITEL--PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP 291
            +    +      +S + +  L  L      +L+      G+   L  ++ A + I+++P
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQITEIP 369

Query: 292 SSV-ADSNALLILDFSRCKGLVSLPRSLLLG-LSSLGLLY--------IMNCAVMEIPQE 341
           ++    +  +  L F+  K L  +P       +S +  +         +       +   
Sbjct: 370 ANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 342 IAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGC 400
                ++ S++L  N     P  +    S L S++L   NML  +P   L  +  +    
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNT 487

Query: 401 NMLRSL-----------PELPLC----LQELDATNCNRLQSLPE 429
            +L S+            +        L  +D +  N     P 
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (254), Expect = 3e-23
 Identities = 66/478 (13%), Positives = 144/478 (30%), Gaps = 71/478 (14%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
               ++                 L+K  +    + +            +  K   +   +
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-----SSRITLKDTQIGQLS 192

Query: 70  YPLRILPSNFKP-KNLVELNLRFSKVEQPWEGEKAC------------VPSSIQNFKYLS 116
             +  +         L +  +  S        E                     N K L+
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 117 ALSFEGCKSLRSFPSNL--------------HFVCPVTINFSYCVTLIEFPQISGKITRL 162
            +    C +L   P+ L                +    +       L + P    KI  +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGE-KIQII 310

Query: 163 YLDQSAIEEV--PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERF 220
           Y+  + ++     +S++ +  L +L+    + L+     F     L  L +     +   
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYN-QITEI 368

Query: 221 P-EILEKMEHLKRINLDGTAITELPSSFE--NLPGLEELFVS-------DCSKLDKLPDN 270
           P       E ++ ++     +  +P+ F+  ++  +  +  S       D    D L   
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 271 IGNLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLG-------L 322
                ++  I+ + + IS+ P  + +  + L  ++      L  +P++ L          
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNT 487

Query: 323 SSLGLLYIMNCAVMEIPQEIAY--LSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRC- 379
             L  + +    + ++  +     L  L  +DL  N+F   P      S L    +R   
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547

Query: 380 -----NMLQSLP-ALPLC--LKYLHLTGCNMLRSLPELPL-CLQELDATNCNRLQSLP 428
                  L+  P  + LC  L  L + G N +R + E     +  LD  + N   S+ 
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQI-GSNDIRKVNEKITPNISVLDIKD-NPNISID 603

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 64/407 (15%), Positives = 142/407 (34%), Gaps = 58/407 (14%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPE--------- 60
            +    +    +   + N+ +L  ++ Y            +LP  L+ LPE         
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT------KLPTFLKALPEMQLINVACN 283

Query: 61  KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSF 120
           +           + L      + +  + + ++ ++         V +S+Q  K L  L  
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---TFP---VETSLQKMKKLGMLEC 337

Query: 121 EGCKSLRSFPSNL-HFVCPVTINFSYC--VTLI-EFPQISGKITRLYLDQSAIEEVPSSI 176
              + L          +   ++N +Y     +   F   + ++  L    + ++ +P+  
Sbjct: 338 LYNQ-LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396

Query: 177 EC--LTDLEVLDLR-------DCKRLKRISTRFCKLRSLVDLFVNGCLNLERFP-EILEK 226
           +   ++ +  +D         D K    +     K  ++  + ++    + +FP E+   
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFST 455

Query: 227 MEHLKRINLDGTAITELP--------SSFENLPGLEELFVSDCSKLDKLPDNI--GNLES 276
              L  INL G  +TE+P         +F+N   L  + +    KL KL D+     L  
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPY 514

Query: 277 LRHISAAGSAISQLPSSVADSNALLILDFSRCKGLV------SLPRSLLLGLSSLGLLYI 330
           L  I  + ++ S+ P+   +S+ L        +           P  +     SL  L I
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQI 573

Query: 331 MNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS-IKQLSRLCSLDL 376
            +  + ++ ++I    ++  LD++ N   S+  S +          L
Sbjct: 574 GSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 24/194 (12%), Positives = 54/194 (27%), Gaps = 12/194 (6%)

Query: 246 SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHI-----SAAGSAISQLPSSVADSNAL 300
           S  +   +  L +       ++PD IG L  L  +         +     P  ++ + + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 301 LILDFSRCKGLVSLPRSL-LLGLSSLGLLYIMNCAVM-EIPQEIAYLSSLKSLDLRGNNF 358
                 R     +          S L    I +      I +          +    NN 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 359 ESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLC---LQE 415
             +  ++ +L++L    +     +          +  +       ++          L +
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENI--CEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 416 LDATNCNRLQSLPE 429
           ++  NC  L  LP 
Sbjct: 254 VEVYNCPNLTKLPT 267

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 97.8 bits (244), Expect = 4e-22
 Identities = 64/415 (15%), Positives = 123/415 (29%), Gaps = 41/415 (9%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           LD        L     +++     L   +    +I        +   +            
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 70  YPLRILPSNFKPKNLVELNLRFSKVEQPWEGE-KACVPSSIQ-------NFKYLSALSFE 121
              + L  N   ++L          E       +     S++        F  +S+ +F 
Sbjct: 217 VIFKGL-KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275

Query: 122 GCKSLRSFPSNLHFVCPVTIN--FSYCVTLIEFPQISGKITRLYLDQSAIEEVPS-SIEC 178
               L+    +L       +        TL           +L L  +  E +   S   
Sbjct: 276 CFSGLQEL--DLTATHLSELPSGLVGLSTL----------KKLVLSANKFENLCQISASN 323

Query: 179 LTDLEVLDLRDCKRLKRISTR-FCKLRSL--VDLFVNGCLNLERFPEILEKMEHLKRINL 235
              L  L ++   +   + T     L +L  +DL  +     +     L  + HL+ +NL
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 236 DGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDN--IGNLESLRHISAAGSAISQLPS 292
                  L + +F+  P LE L ++   +L          NL  L+ ++ + S +     
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 293 SV-ADSNALLILDFSRC--KGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSL 348
            +     AL  L+              + L  L  L +L +  C +  I Q     L  +
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

Query: 349 KSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC----LKYLHLTG 399
             +DL  N   S         +   L+L   N +  +    L      + ++L  
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGIYLNLAS-NHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.8 bits (218), Expect = 8e-19
 Identities = 84/457 (18%), Positives = 153/457 (33%), Gaps = 57/457 (12%)

Query: 9   FLDLS--KIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLH 66
            L+ S   +    +    F+ + NL  L     + Y I        +  +    +L  L 
Sbjct: 37  CLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIH------EDTFQSQH-RLDTLV 87

Query: 67  WDTYPLRILPSNF--KPKNLVELNL---RFSKVEQPWEGEKACVPSSIQNFKYLSALSFE 121
               PL  +       PK L  L       S ++             + N K L +L   
Sbjct: 88  LTANPLIFMAETALSGPKALKHLFFIQTGISSID----------FIPLHNQKTLESLYLG 137

Query: 122 GCKSLRSFPSNLHFVCP--VTINFSYCV-TLIEFPQISG--KITRLYLDQS--AIEEVPS 174
               + S      F       ++F       +    +S   + T L L+ +   I  +  
Sbjct: 138 SNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196

Query: 175 SIECLTDLEVLDLRDCKRLKRI--STRFCKLRSLVDLFVNGCLNLERFPEILEKME--HL 230
                   + L+    + L  I    +   ++SL         + +  P + E +    +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 231 KRINLDGTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ 289
           + INL       +  ++F    GL+EL ++    L +LP  +  L +L+ +  + +    
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFEN 315

Query: 290 LPSSVADS-NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP---QEIAYL 345
           L    A +  +L  L        + L    L  L +L  L + +  +        ++  L
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 346 SSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQSLPALPL-----CLKYLHLTG 399
           S L+SL+L  N   SL   + K+  +L  LDL     L+   A         LK L+L+ 
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF-TRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 400 CNMLRSLPELPLC----LQELDATNCNRLQSLPEIPS 432
            ++L    E        LQ L+    N         +
Sbjct: 435 -SLLDISSEQLFDGLPALQHLNLQG-NHFPKGNIQKT 469

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 5e-22
 Identities = 82/436 (18%), Positives = 151/436 (34%), Gaps = 47/436 (10%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           L+LS  +     PG F  +  L  L        ++     +           +R L    
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLN---NVQLGPSLTEKLCLELANT-SIRNLSLSN 231

Query: 70  YPLRILP----SNFKPKNLVELNLRFSKVEQPWEGEKACVPS------SIQNFKYLSALS 119
             L           K  NL  L+L ++ +        A +P          N ++L + S
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 120 FEGCKSLRS--FPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIE 177
             G  ++R      +         +    +    F  +   +  L ++ + I  + S++ 
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPK-IDDFSFQWLK-CLEHLNMEDNDIPGIKSNMF 349

Query: 178 C-LTDLEVLDLRD----CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKR 232
             L +L+ L L +     + L   +        L  L +      +   +    + HL+ 
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 233 INLDGTAITEL--PSSFENLPGLEELFVSDCSKLDKLPDN-IGNLESLRHISAAG---SA 286
           ++L    I +      +  L  + E+++S   K  +L  N    + SL+ +         
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 287 ISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYI---------MNCAVME 337
           +   PS       L ILD S    + ++   +L GL  L +L +          +     
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQSLPALPLC----L 392
               +  LS L  L+L  N F+ +P    K L  L  +DL   N L +LPA        L
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSL 586

Query: 393 KYLHLTGCNMLRSLPE 408
           K L+L   N++ S+ +
Sbjct: 587 KSLNLQK-NLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.2 bits (227), Expect = 7e-20
 Identities = 78/472 (16%), Positives = 142/472 (30%), Gaps = 72/472 (15%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWD- 68
           L L       +    F    NL  L          +            L   L+ L    
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK------LGTQVQLE-NLQELLLSN 154

Query: 69  ---TYPLRILPSNFKPKNLVELNL---RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEG 122
                        F   +L +L L   +  +            P        L  L    
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFS----------PGCFHAIGRLFGLFLNN 204

Query: 123 CKSLRSFPSNLHFVCPVT----INFSYC-VTLIEFPQISG----KITRLYLDQSAIEEV- 172
            +   S    L      T    ++ S   ++        G     +T L L  + +  V 
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 173 PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERF---------PEI 223
             S   L  LE   L         S     L ++  L +      +              
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 224 LEKMEHLKRINLDGTAITEL-PSSFENLPGLEELFVSD-CSKLDKLPDNIG---NLESLR 278
            + ++ L+ +N++   I  +  + F  L  L+ L +S+  + L  L +          L 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 279 HISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME 337
            ++   + IS++ S   +    L +LD    +    L      GL ++  +Y+     ++
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 338 IPQE-IAYLSSLKSLDLRGNNFESL---PASIKQLSRLCSLDLRRCNMLQSLPALPLC-- 391
           + +   A + SL+ L LR    +++   P+  + L  L  LDL   N + ++    L   
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN-NNIANINDDMLEGL 503

Query: 392 --LKYLHLTGCNMLRSLPELPLC------------LQELDATNCNRLQSLPE 429
             L+ L L   N L  L +                L  L+  + N    +P 
Sbjct: 504 EKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 5e-19
 Identities = 52/302 (17%), Positives = 107/302 (35%), Gaps = 26/302 (8%)

Query: 149 LIEFPQ-ISGKITRLYLDQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSL 206
           L + P  +   IT L L  + +  +  ++    + L  LD+      K       KL  L
Sbjct: 16  LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 207 VDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITEL-PSSFENLPGLEELFVSDCSKLD 265
             L +      +   +      +L  ++L   +I ++  + F     L  L +S    L 
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLS 134

Query: 266 KLPDN-IGNLESLRHISAAGSAISQLPS---SVADSNALLILDFSRCKGLVSLPRSLLLG 321
                    LE+L+ +  + + I  L S    +  +++L  L+ S  + +          
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHA 193

Query: 322 LSSLGLLYI----MNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIK---QLSRLCSL 374
           +  L  L++    +  ++ E        +S+++L L  +   +   +     + + L  L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 375 DLRRCNMLQSLPALPLC----LKYLHLTGCNMLRSLPELPLC----LQELDATNCNRLQS 426
           DL   N L  +          L+Y  L   N ++ L    L     ++ L+       QS
Sbjct: 254 DLSY-NNLNVVGNDSFAWLPQLEYFFLEY-NNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 427 LP 428
           + 
Sbjct: 312 IS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 74/461 (16%), Positives = 143/461 (31%), Gaps = 76/461 (16%)

Query: 9   FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLH-W 67
            LD+       L+P     +  L++L     +  ++        +        L  LH  
Sbjct: 53  SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-------SDKTFAFCTNLTELHLM 105

Query: 68  DTYPLRILPSNFKP-KNLVELNL---RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGC 123
                +I  + F   KNL+ L+L     S  +            +    + L  L     
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK----------LGTQVQLENLQELLLSNN 155

Query: 124 KSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEV-PSSIECLTDL 182
                    +  +    ++     +L +          L L  + I+E  P     +  L
Sbjct: 156 --------KIQALKSEELDIFANSSLKK----------LELSSNQIKEFSPGCFHAIGRL 197

Query: 183 EVLDLRDCKRLKRISTRFC---KLRSLVDLFVNGCLNLERFPEIL---EKMEHLKRINLD 236
             L L + +    ++ + C      S+ +L ++    L           K  +L  ++L 
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 237 GTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL----- 290
              +  +   SF  LP LE  F+   +       ++  L ++R+++   S   Q      
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

Query: 291 -----PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYI-MNCAVMEIPQEIA- 343
                  S      L  L+      +  +  ++  GL +L  L +  +   +        
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 344 ---YLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQSLPALPLC----LKYL 395
                S L  L+L  N    + + +   L  L  LDL    + Q L          +  +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 396 HLTGCNMLRSLPELPLC----LQELDATNCNRLQSLPEIPS 432
           +L+  N    L          LQ L       L+++   PS
Sbjct: 436 YLSY-NKYLQLTRNSFALVPSLQRLMLRR-VALKNVDSSPS 474

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 4e-17
 Identities = 47/269 (17%), Positives = 84/269 (31%), Gaps = 46/269 (17%)

Query: 177 ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLD 236
           +C    EV D                              L + P+ L    ++  +NL 
Sbjct: 1   KCTVSHEVADCSHL-------------------------KLTQVPDDLPT--NITVLNLT 33

Query: 237 GTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV- 294
              +  L  ++F     L  L V   +     P+    L  L+ ++   + +SQL     
Sbjct: 34  HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93

Query: 295 ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYI-MNCAVMEIPQEIAYLSSLKSLDL 353
           A    L  L       +  +  +  +   +L  L +  N            L +L+ L L
Sbjct: 94  AFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152

Query: 354 RGNNFESLPA---SIKQLSRLCSLDLRRCNMLQSLPALPLC----LKYLHLTGCNMLRSL 406
             N  ++L +    I   S L  L+L   N ++            L  L L    +  SL
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSS-NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 407 PELPLC------LQELDATNCNRLQSLPE 429
            E          ++ L  +N ++L +   
Sbjct: 212 TEKLCLELANTSIRNLSLSN-SQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 3e-16
 Identities = 72/386 (18%), Positives = 129/386 (33%), Gaps = 52/386 (13%)

Query: 9   FLDLSKIKCINLDPGAFTNMSNLRLLKFY---VPKFYEIERFPMQLPNGLEYLPEKLRYL 65
           +  L      +L   +   + N+R L        +   +   P       ++L   L +L
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-CLEHL 334

Query: 66  HWDTYPLRILPSNF--KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGC 123
           + +   +  + SN      NL  L+L                     +F  L  L+ E  
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSN-------------------SFTSLRTLTNETF 375

Query: 124 KSLRSFPSNLHFVCPVTINFSYC-VTLIEFPQISG--KITRLYLDQSAIEEV--PSSIEC 178
            SL    S LH      +N +   ++ IE    S    +  L L  + I +         
Sbjct: 376 VSLAH--SPLH-----ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

Query: 179 LTDLEVLDLRDCKRLKRISTRFCKLRSLV--DLFVNGCLNLERFPEILEKMEHLKRINLD 236
           L ++  + L   K L+     F  + SL    L      N++  P   + + +L  ++L 
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488

Query: 237 GTAITELPSS-FENLPGLEELFVSDC--------SKLDKLPDNIGNLESLRHISAAGSAI 287
              I  +     E L  LE L +           +        +  L  L  ++   +  
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 288 SQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI--AY 344
            ++P  V  D   L I+D      L +LP S+     SL  L +    +  + +++    
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607

Query: 345 LSSLKSLDLRGNNFESLPASIKQLSR 370
             +L  LD+R N F+    SI     
Sbjct: 608 FRNLTELDMRFNPFDCTCESIAWFVN 633

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.7 bits (236), Expect = 5e-22
 Identities = 55/263 (20%), Positives = 100/263 (38%), Gaps = 24/263 (9%)

Query: 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTR-FCKLRSL--VDLFVNGCLN 216
           T +  +   +  VP+ I   +    L+L   K L+ +    F KL  L  + L  NG   
Sbjct: 10  TEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 217 LERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDN--IGNL 274
                +       LK ++L    +  + S+F  L  LE L       L ++ +     +L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSL 125

Query: 275 ESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC 333
            +L ++  + +      + +    ++L +L  +      +    +   L +L  L +  C
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 334 AVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPA---- 387
            + ++       LSSL+ L++  NNF SL     K L+ L  LD    N + +       
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQ 244

Query: 388 -LPLCLKYLHLTG------CNML 403
             P  L +L+LT       C   
Sbjct: 245 HFPSSLAFLNLTQNDFACTCEHQ 267

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 43/236 (18%), Positives = 77/236 (32%), Gaps = 58/236 (24%)

Query: 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL 217
            +  L L  + +  + S+   L  LE LD +              L+ + +         
Sbjct: 79  SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-----------SNLKQMSE--------- 118

Query: 218 ERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNI-GNLE 275
                +   + +L  +++  T      +  F  L  LE L ++  S  +    +I   L 
Sbjct: 119 ---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 276 SLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAV 335
           +L                         LD S+C+ L  L  +    LSSL +L + +   
Sbjct: 176 NLTF-----------------------LDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNF 211

Query: 336 MEIPQEI-AYLSSLKSLDLRGNNFESLPASIKQ--LSRLCSLDLRR------CNML 382
             +       L+SL+ LD   N+  +      Q   S L  L+L +      C   
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 18/184 (9%)

Query: 260 DCS--KLDKLPDNIGNLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCK-GLVSLP 315
            C+   L  +P  I    S   +    + +  LP  V      L  L  S          
Sbjct: 13  RCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 316 RSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS--IKQLSRLCS 373
                G +SL  L +    V+ +      L  L+ LD + +N + +        L  L  
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 374 LDLRRCNMLQSLPALPLC----LKYLHLTGCNMLRSLPELPLC----LQELDATNCNRLQ 425
           LD+      +            L+ L + G +   +           L  LD +   +L+
Sbjct: 131 LDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLE 188

Query: 426 SLPE 429
            L  
Sbjct: 189 QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 45/282 (15%), Positives = 85/282 (30%), Gaps = 64/282 (22%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           L+L   K  +L  G F  ++ L  L                  +  ++    L+YL    
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG-----CCSQSDFGTTSLKYLDLSF 87

Query: 70  YPLRILPSNFKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS 128
             +  + SNF   + L  L+ + S ++Q  E                    F   ++L  
Sbjct: 88  NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS-----------------VFLSLRNLI- 129

Query: 129 FPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSI-ECLTDLEVLDL 187
                                            L +  +      + I   L+ LEVL +
Sbjct: 130 --------------------------------YLDISHTHTRVAFNGIFNGLSSLEVLKM 157

Query: 188 RDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAITELPS 245
                 +      F +LR+L  L ++ C  LE+        +  L+ +N+       L +
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 246 S-FENLPGLEELFVSDCSKLDKLPDNI--GNLESLRHISAAG 284
             ++ L  L+ L  S  + +             SL  ++   
Sbjct: 217 FPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQ 257

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.2 bits (237), Expect = 2e-21
 Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 18/248 (7%)

Query: 149 LIEFPQ-ISGKITRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTR-FCKLRS 205
           L E PQ I      L L ++ I+ + +     L  LEVL L     +++I    F  L S
Sbjct: 66  LSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLAS 124

Query: 206 LVDLFVNGCLNLERFP-EILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSK 263
           L  L +     L   P    E +  L+ + L    I  +PS +F  +P L  L + +  K
Sbjct: 125 LNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183

Query: 264 LDKLPDNI-GNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGL 322
           L+ + +     L +L++++     I  +P+ +     L  L+ S       +      GL
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNH-FPEIRPGSFHGL 241

Query: 323 SSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRR-- 378
           SSL  L++MN  V  I +     L+SL  L+L  NN  SLP  +   L  L  L L    
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

Query: 379 ----CNML 382
               C++L
Sbjct: 302 WNCDCDIL 309

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 7e-14
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 18/182 (9%)

Query: 260 DCSK--LDKLPDNIGNLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPR 316
            C++  L ++P  I    + R+++   + I  + +      + L +L   R   +  +  
Sbjct: 60  VCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEV 116

Query: 317 SLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQLSRLCSL 374
               GL+SL  L + +  +  IP     YLS L+ L LR N  ES+P+    ++  L  L
Sbjct: 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 375 DLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPELPLC--LQELDATNCNRLQSL 427
           DL     L+ +       L   LKYL+L     ++ +P L     L+EL+ +  N    +
Sbjct: 177 DLGELKKLEYISEGAFEGLFN-LKYLNLGM-CNIKDMPNLTPLVGLEELEMSG-NHFPEI 233

Query: 428 PE 429
             
Sbjct: 234 RP 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 49/282 (17%), Positives = 93/282 (32%), Gaps = 69/282 (24%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           L+L +     +    F ++ +L +L+       +IE            L   L  L    
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE------VGAFNGLA-SLNTLELFD 132

Query: 70  YPLRILPSN-FKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR 127
             L ++PS  F+    L EL LR +                    + + + +F    SL 
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNP------------------IESIPSYAFNRVPSLM 174

Query: 128 SFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQS-AIEEVPSSI-ECLTDLEVL 185
                                            RL L +   +E +     E L +L+ L
Sbjct: 175 ---------------------------------RLDLGELKKLEYISEGAFEGLFNLKYL 201

Query: 186 DLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAITELP 244
           +L  C  +K +      L  L +L ++G  +           +  LK++ +  + ++ + 
Sbjct: 202 NLGMC-NIKDMPN-LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 245 S-SFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAG 284
             +F+ L  L EL ++    L  LP ++   L  L  +    
Sbjct: 259 RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.9 bits (234), Expect = 7e-21
 Identities = 66/379 (17%), Positives = 118/379 (31%), Gaps = 22/379 (5%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           LD+S      +   AF  +    L          I +  +Q   GL      L     + 
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 70  YPLRILPSNFKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS 128
                 PS  +   ++     R +      +               +SA+S  G   ++ 
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD-----IVKFHCLANVSAMSLAGVS-IKY 299

Query: 129 FPSNLHFVCPVTINFSYC-VTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDL 187
                      +++   C +       +   +  L L  +    +      L  L  LDL
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLP-FLKSLTLTMNKGS-ISFKKVALPSLSYLDL 357

Query: 188 RDCK--RLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP- 244
                      S       SL  L ++              +E L+ ++   + +  +  
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 245 -SSFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSAISQLPSSVADSN--AL 300
            S+F +L  L  L +S         D I   L SL  +  AG++      S   +N   L
Sbjct: 417 FSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 301 LILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFE 359
             LD S+C+ L  +   +   L  L LL + +  ++ +       L SL +LD   N  E
Sbjct: 476 TFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 360 SLPASI-KQLSRLCSLDLR 377
           +    +      L   +L 
Sbjct: 535 TSKGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 71/469 (15%), Positives = 132/469 (28%), Gaps = 86/469 (18%)

Query: 9   FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWD 68
           +LDLS+ +   ++  A+  + +L  L                 P     L   L  L   
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS------PGSFSGLT-SLENLVAV 112

Query: 69  TYPLRILPSN-FKP-KNLVELNL---RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGC 123
              L  L S        L +LN+        +         +P+   N   L  +     
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCK---------LPAYFSNLTNLVHVDLSYN 163

Query: 124 KSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLE 183
             +++   N                L    +       L +  + I+ +         L 
Sbjct: 164 Y-IQTITVN---------------DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207

Query: 184 VLDLRDCKRLKRISTRFC------KLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLD 236
            L LR       I            +  L+        NLE F   I+E +  +      
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 237 GT---AITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS 293
            T     ++    F  L  +  + ++    +  L D        + +S     + Q P+ 
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVP-KHFKWQSLSIIRCQLKQFPT- 324

Query: 294 VADSNALLILDFSRCKGLVSLPRSLL-----------------------LGLSSLGLLYI 330
             D   L  L  +  KG +S  +  L                       LG +SL  L +
Sbjct: 325 -LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 331 MNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPA--SIKQLSRLCSLDLRRCNMLQSLPAL 388
                + +      L  L+ LD + +  + +    +   L +L  LD+      +     
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY-TNTKIDFDG 442

Query: 389 PLC----LKYLHLTGCNMLRSLPELPLC----LQELDATNCNRLQSLPE 429
                  L  L + G +   +           L  LD +   +L+ +  
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK-CQLEQISW 490

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 53/299 (17%), Positives = 100/299 (33%), Gaps = 26/299 (8%)

Query: 153 PQISGKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFV 211
             I      + L  + ++ +   S    ++L+ LDL  C+        +  L  L +L +
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 212 NGCLNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCS-KLDKLPD 269
            G       P     +  L+ +    T +  L S     L  L++L V+       KLP 
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 270 NIGNLESLRHISAAGSAISQLPSSV-----ADSNALLILDFSRCKGLVSLPRSLLLGLSS 324
              NL +L H+  + + I  +  +       +    L LD S    +  +      G+  
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKL 206

Query: 325 LGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFESL-------PASIKQLSRLCSLDL 376
             L    N     I +  +  L+ L    L    F+         P+ ++ L  +   + 
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 377 R-RCNMLQSLPALPLC----LKYLHLTGCNMLRSLPELPLC--LQELDATNCNRLQSLP 428
           R       S   +       +  + L G   ++ L ++P     Q L      +L+  P
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAG-VSIKYLEDVPKHFKWQSLSIIR-CQLKQFP 323

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 78/455 (17%), Positives = 131/455 (28%), Gaps = 58/455 (12%)

Query: 9   FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLH-W 67
            +DLS      L   +F+N S L+ L     +   IE            L   L  L   
Sbjct: 36  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE------DKAWHGLH-HLSNLILT 88

Query: 68  DTYPLRILPSNFKP-KNLVELNL---RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGC 123
                   P +F    +L  L     + + +E             I     L  L+    
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLE----------SFPIGQLITLKKLNVAHN 138

Query: 124 KSLRSFPSNLHFV-CP--VTINFSYCV-------TLIEFPQISGKITRLYLDQSAIEEVP 173
             + S     +F      V ++ SY          L    +       L +  + I+ + 
Sbjct: 139 F-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197

Query: 174 SSIECLTDLEVLDLRDCKRLKRISTRFC------KLRSLVDLFVNGCLNLERFPE-ILEK 226
                   L  L LR       I            +  L+        NLE F   I+E 
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257

Query: 227 MEHLKRINLDGT---AITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAA 283
           +  +       T     ++    F  L  +  + ++    +  L D        + +S  
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVP-KHFKWQSLSII 315

Query: 284 GSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIA 343
              + Q P+   D   L  L  +  KG +S  +  L  LS L L                
Sbjct: 316 RCQLKQFPT--LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 344 YLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC-----LKYLHLT 398
             +SL+ LDL  N    + A+   L  L  LD +  + L+ +           L YL ++
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDIS 432

Query: 399 GCNMLRSLPELPLC----LQELDATNCNRLQSLPE 429
                +   +        L  L     +   +   
Sbjct: 433 Y-TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 29/223 (13%)

Query: 215 LNLERFPEILEKMEHLKRINLDGTAITELP-SSFENLPGLEELFVSDCSKLDKLPDN-IG 272
             L + P+ +      K I+L    +  L   SF N   L+ L +S C +++ + D    
Sbjct: 21  QKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWH 77

Query: 273 NLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM 331
            L  L ++   G+ I        +   +L  L     K L SL    +  L +L  L + 
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVA 136

Query: 332 NC--AVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALP 389
           +      ++P   + L++L  +DL  N  +++                  N LQ L   P
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV----------------NDLQFLRENP 180

Query: 390 LCLKYLHLTGCNMLRSLPELPLC---LQELDATNCNRLQSLPE 429
                L ++  N +  + +       L EL         ++ +
Sbjct: 181 QVNLSLDMSL-NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 14/104 (13%)

Query: 337 EIPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQSLPALPLC---- 391
           ++P +I   SS K++DL  N  + L + S    S L  LDL RC  ++++          
Sbjct: 25  KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHH 81

Query: 392 LKYLHLTGCNMLRSLPELPLC----LQELDATNCNRLQSLPEIP 431
           L  L LTG N ++S           L+ L A    +L SL   P
Sbjct: 82  LSNLILTG-NPIQSFSPGSFSGLTSLENLVAVE-TKLASLESFP 123

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 64/377 (16%), Positives = 140/377 (37%), Gaps = 33/377 (8%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           L++  +   N    +  ++ ++  L  ++ +   +      + + + YL  +LR  +   
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL--ELRDTNLAR 210

Query: 70  YPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSF 129
           +    LP +     + +L  R S +    +     +   ++    LS + F+ C      
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLT---DESFNELLKLLRYILELSEVEFDDCTLN--- 264

Query: 130 PSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSI-ECLTDLEVLDLR 188
              L    P   +    +  +E   I     RL++ Q  +    S++   L  ++ + + 
Sbjct: 265 --GLGDFNPSESDVVSELGKVETVTIR----RLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 189 DCKRLKRISTRFCK-LRSLVDLFVNG-CLNLERF--PEILEKMEHLKRINLDGTAITELP 244
           + K +  +   F + L+SL  L ++   +  E             L+ + L    +  + 
Sbjct: 319 NSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 245 ---SSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALL 301
                   L  L  L +S       +PD+    E +R ++ + + I  + + +  +  L 
Sbjct: 378 KTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT--LE 434

Query: 302 ILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESL 361
           +LD S    L S      L L  L  LYI    +  +P + +    L  + +  N  +S+
Sbjct: 435 VLDVSNNN-LDSFS----LFLPRLQELYISRNKLKTLP-DASLFPVLLVMKISRNQLKSV 488

Query: 362 PASI-KQLSRLCSLDLR 377
           P  I  +L+ L  + L 
Sbjct: 489 PDGIFDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 7e-15
 Identities = 74/431 (17%), Positives = 140/431 (32%), Gaps = 52/431 (12%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           LDLS     +L    F  +S+L+ L      +  +    +        L   L+ L    
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-----FPNLT-NLQTLRIGN 132

Query: 70  YPL--RILPSNFKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL 126
                 I   +F    +L EL ++                    + +   + S +  + +
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKAL------------------SLRNYQSQSLKSIRDI 174

Query: 127 RSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIE-CLTDLEVL 185
                 LH       + S  +  I    +S  +  L L  + +     S          +
Sbjct: 175 HHL--TLHL------SESAFLLEIFADILS-SVRYLELRDTNLARFQFSPLPVDEVSSPM 225

Query: 186 DLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS 245
                +        F +L  L+       L L         +  L   N   + +     
Sbjct: 226 KKLAFRGSVLTDESFNELLKLL----RYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281

Query: 246 SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADS-NALLILD 304
             E +  +  L +        L      LE ++ I+   S +  +P S +    +L  LD
Sbjct: 282 KVETV-TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340

Query: 305 FSRCK--GLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE---IAYLSSLKSLDLRGNNFE 359
            S            +      SL  L +    +  + +    +  L +L SLD+  N F 
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

Query: 360 SLPASIKQLSRLCSLDLRRCNMLQSLPA-LPLCLKYLHLTGCNMLRSLPELPLCLQELDA 418
            +P S +   ++  L+L     ++ +   +P  L+ L ++  N L S       LQEL  
Sbjct: 401 PMPDSCQWPEKMRFLNLSS-TGIRVVKTCIPQTLEVLDVSN-NNLDSFSLFLPRLQELYI 458

Query: 419 TNCNRLQSLPE 429
           +  N+L++LP+
Sbjct: 459 SR-NKLKTLPD 468

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 82/444 (18%), Positives = 148/444 (33%), Gaps = 48/444 (10%)

Query: 9   FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWD 68
            LDLS  K   +  G     +NL++L     +   IE       +    L   L +L   
Sbjct: 30  SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE------GDAFYSLG-SLEHLDLS 82

Query: 69  TYPLRILPSN-FKP-KNLVELNLRFSK-VEQPWEGEKACVP-------SSIQNFKYLSAL 118
              L  L S+ F P  +L  LNL  +             +         +++ F  +  +
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 119 SFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSI-E 177
            F G  SL      +  +           ++         I  L L  S    +     +
Sbjct: 143 DFAGLTSLNEL--EIKALSLRNYQSQSLKSI-------RDIHHLTLHLSESAFLLEIFAD 193

Query: 178 CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG 237
            L+ +  L+LRD    +   +          +            E   ++  L R  L+ 
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 238 TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV-AD 296
           + +     +   L           S+L K+        ++R +      +    S+V + 
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKV-----ETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 297 SNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEI----PQEIAYLSSLKSLD 352
              +  +     K +  +P S    L SL  L +    ++E             SL++L 
Sbjct: 309 LEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 353 LRGNNFESLPA---SIKQLSRLCSLDLRRCNMLQSLP---ALPLCLKYLHLTGCNMLRSL 406
           L  N+  S+      +  L  L SLD+ R N    +P     P  +++L+L+    +R +
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISR-NTFHPMPDSCQWPEKMRFLNLSS-TGIRVV 425

Query: 407 P-ELPLCLQELDATNCNRLQSLPE 429
              +P  L+ LD +N N L S   
Sbjct: 426 KTCIPQTLEVLDVSN-NNLDSFSL 448

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 45/287 (15%), Positives = 87/287 (30%), Gaps = 33/287 (11%)

Query: 153 PQISGKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFV 211
             ++  +  L L  + I  +    +    +L+VL L+   R+  I               
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIE-------------- 66

Query: 212 NGCLNLERFPEILEKMEHLKRINLDGTAITELPSS-FENLPGLEELFVSDCSKLDKLPDN 270
                     +    +  L+ ++L    ++ L SS F  L  L+ L +        L   
Sbjct: 67  ---------GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVT 116

Query: 271 --IGNLESLRHIS-AAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLG 326
               NL +L+ +        S++     A   +L  L+      L +     L  +  + 
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIH 175

Query: 327 LLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSL 385
            L +       + +     LSS++ L+LR  N      S   +  + S   +       L
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 386 PALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS 432
                      L     L  +      L  L   N +    + E+  
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 16/132 (12%)

Query: 309 KGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFESLPASI-K 366
           +   S+P  L    +++  L +    +  I    +   ++L+ L L+ +   ++      
Sbjct: 15  RSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY 71

Query: 367 QLSRLCSLDLRRCNMLQSLPALPLC----LKYLHLTGCNMLRSLPELPLC-----LQELD 417
            L  L  LDL   N L SL +        LKYL+L G N  ++L    L      LQ L 
Sbjct: 72  SLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTLR 129

Query: 418 ATNCNRLQSLPE 429
             N      +  
Sbjct: 130 IGNVETFSEIRR 141

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 40/280 (14%), Positives = 96/280 (34%), Gaps = 21/280 (7%)

Query: 158 KITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLN 216
            +  L L  + + ++  + +   T LE+L+L     L         L +L  L +N    
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-Y 91

Query: 217 LERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDN-IGNLE 275
           ++           ++ ++     I+ +        G + +++++  K+  L D   G   
Sbjct: 92  VQELLV----GPSIETLHAANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRS 144

Query: 276 SLRHISAAGSAISQLP--SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC 333
            ++++    + I  +      A S+ L  L+      +  +     +  + L  L + + 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK--GQVVFAKLKTLDLSSN 201

Query: 334 AVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLR----RCNMLQSLPALP 389
            +  +  E    + +  + LR N    +  +++    L   DLR     C  L+   +  
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 390 LCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPE 429
             ++ +       L    E    +  L        + LP 
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 8/142 (5%)

Query: 290 LPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP-QEIAYLSSL 348
           +     + N   I   +    L     SL     ++  L +    + +I   ++A  + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 349 KSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPE 408
           + L+L  N        ++ LS L +LDL   N +Q L   P  ++ LH    N +  +  
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNN-NYVQELLVGP-SIETLHAAN-NNISRVSC 116

Query: 409 LPL-CLQELDATNCNRLQSLPE 429
                 + +   N N++  L +
Sbjct: 117 SRGQGKKNIYLAN-NKITMLRD 137

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 41/367 (11%), Positives = 98/367 (26%), Gaps = 62/367 (16%)

Query: 4   AIEGIFLDLSKIKCINL--------DPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGL 55
           AI  I  + ++ K   +              +  N++ L        +I          L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS------AADL 54

Query: 56  EYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYL 115
                KL  L+  +  L           L  L+L  + V              +     +
Sbjct: 55  APFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV------------QELLVGPSI 101

Query: 116 SALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPS- 174
             L       +     +                             +YL  + I  +   
Sbjct: 102 ETLHAANNN-ISRVSCSR------------------GQG----KKNIYLANNKITMLRDL 138

Query: 175 SIECLTDLEVLDLRDCKRLKRISTR--FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKR 232
              C + ++ LDL+    +  ++         +L  L +     +            LK 
Sbjct: 139 DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKT 195

Query: 233 INLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS 292
           ++L    +  +   F++  G+  + + +  KL  +   +   ++L H    G+       
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 293 SVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLD 352
               S    +   +  + +  L        +   L +       ++P       + + + 
Sbjct: 255 RDFFSKNQRVQTVA-KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP----APFADRLIA 309

Query: 353 LRGNNFE 359
           L  ++  
Sbjct: 310 LGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPALPLC----L 392
           I +     +  K   +  ++ +   AS+ +    +  LDL   N L  + A  L     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKL 60

Query: 393 KYLHLTGCNMLRSLPELPLC--LQELDATNCNRLQSLPEIPS 432
           + L+L+  N+L    +L     L+ LD  N N +Q L   PS
Sbjct: 61  ELLNLSS-NVLYETLDLESLSTLRTLDLNN-NYVQELLVGPS 100

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 71/403 (17%), Positives = 138/403 (34%), Gaps = 42/403 (10%)

Query: 10  LDLS--KIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHW 67
           L+++   I+   L P  F+N++NL  L        +I+         L  +P     L  
Sbjct: 129 LNVAHNLIQSFKL-PEYFSNLTNLEHLDLS---SNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 68  DTYPLRILPSN-FKPKNLVELNLRFSKVEQPWEGE-------------KACVPSSIQNFK 113
              P+  +    FK   L +L LR +                            +  N +
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 114 YLSALSFEGCKSLR----SFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRL------- 162
                + EG  +L           +++  +   F+    +  F  +S  I R+       
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 163 ---YLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFC-KLRSLVDLFVNGCLNLE 218
              +L+    +        L  L+ L     K     S      L  L DL  NG     
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL-DLSRNGLSFKG 363

Query: 219 RFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNI--GNLES 276
              +       LK ++L    +  + S+F  L  LE L       L ++ +     +L +
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRN 422

Query: 277 LRHISAAGSAISQLPSSVADS-NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAV 335
           L ++  + +      + + +  ++L +L  +      +    +   L +L  L +  C +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 336 MEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDL 376
            ++       LSSL+ L++  N  +S+P  I  +L+ L  + L
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 78/452 (17%), Positives = 151/452 (33%), Gaps = 51/452 (11%)

Query: 9   FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWD 68
            LDLS+ +   ++ GA+ ++S+L  L         I+   +   +GL      L+ L   
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILT---GNPIQSLALGAFSGLS----SLQKLVAV 108

Query: 69  TYPLRILPSNF--KPKNLVELNLRFSKVEQPWEGEKACVPSSIQ-------NFKYLSALS 119
              L  L +      K L ELN+  + ++     E     ++++         + +    
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 120 FEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAI--EEVPSSIE 177
                 +     +L        N    +    F +I   + +L L  +      + + I+
Sbjct: 169 LRVLHQMPLLNLSLDLSL----NPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQ 222

Query: 178 CLTDLEVLDL-----RDCKRLKRIST-RFCKLRSLVDLFVNGC---LNLERFPEILEKME 228
            L  LEV  L     R+   L++        L +L             L+   ++   + 
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 229 HLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS 288
           ++   +L    I  +   F    G + L + +C    + P     L+SL+ ++   +   
Sbjct: 283 NVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCK-FGQFPTL--KLKSLKRLTFTSNKGG 338

Query: 289 QLPSSVADSNALLILDFSRCK-GLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSS 347
              S V   + L  LD SR              G +SL  L +    V+ +      L  
Sbjct: 339 NAFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 348 LKSLDLRGNNFESLPASI--KQLSRLCSLDLRRCNMLQSLPALPLC----LKYLHLTGCN 401
           L+ LD + +N + +        L  L  LD+      +            L+ L + G +
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 402 MLRSLPELPLC----LQELDATNCNRLQSLPE 429
              +           L  LD +   +L+ L  
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQ-CQLEQLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 51/327 (15%), Positives = 107/327 (32%), Gaps = 51/327 (15%)

Query: 149 LIEFPQ-ISGKITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCK--------------- 191
             + P  +      L L  + +  + S S     +L+VLDL  C+               
Sbjct: 19  FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 192 --------RLKRISTR-FCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAIT 241
                    ++ ++   F  L SL  L      NL       +  ++ LK +N+    I 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 242 EL--PSSFENLPGLEELFVSDCSKLDKLPDN-IGNLESLR----HISAAGSAISQLPSSV 294
               P  F NL  LE L +S   K+  +    +  L  +      +  + + ++ +    
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 295 ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ----EIAYLSSLKS 350
                L  L        +++ ++ + GL+ L +  ++             + + L  L +
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 351 LDLRGNNFESLPASIKQL----SRLCSLDLRRC--NMLQSLPALP--LCLKYLHLTGCNM 402
           L +       L   +  +    + L ++         ++ +         ++L L     
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN-CK 315

Query: 403 LRSLPELPL-CLQELDATNCNRLQSLP 428
               P L L  L+ L  T+ N+  +  
Sbjct: 316 FGQFPTLKLKSLKRLTFTS-NKGGNAF 341

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 49/237 (20%), Positives = 91/237 (38%), Gaps = 27/237 (11%)

Query: 215 LNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDN-IG 272
           LN  + P+ L      K ++L    +  L S SF + P L+ L +S C ++  + D    
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQ 73

Query: 273 NLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM 331
           +L  L  +   G+ I  L     +  ++L  L       L SL    +  L +L  L + 
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVA 132

Query: 332 NCAVMEI--PQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRL----CSLDLRRCNMLQS 384
           +  +     P+  + L++L+ LDL  N  +S+    ++ L ++     SLDL   N +  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL-SLNPMNF 191

Query: 385 LPALP---LCLKYLHLTGCNMLRSLPELP---------LCLQELDATNCNRLQSLPE 429
           +       + L  L L       ++ +             L   +  N   L+   +
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 14/104 (13%)

Query: 337 EIPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQSLPALPLC---- 391
           +IP  +    S K+LDL  N    L + S      L  LDL R   +Q++          
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSH 77

Query: 392 LKYLHLTGCNMLRSLPELPLC----LQELDATNCNRLQSLPEIP 431
           L  L LTG N ++SL          LQ+L A     L SL   P
Sbjct: 78  LSTLILTG-NPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFP 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.6 bits (230), Expect = 3e-20
 Identities = 88/461 (19%), Positives = 158/461 (34%), Gaps = 60/461 (13%)

Query: 10  LDLS--KIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHW 67
           L L    +    L  G F N+  L  L     +   +      L      L   L+ + +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-----LHPSFGKLN-SLKSIDF 155

Query: 68  DTYPLRILP----SNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGC 123
            +  + ++        + K L   +L  + +      +     +  +N   L  L   G 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGN 214

Query: 124 K----SLRSFPSNLHFVCPVTINFSYCVTLIEF--------------PQISGKITRLYLD 165
                   +F + +      ++  ++ +    F                    +  L L 
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274

Query: 166 QSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPEI 223
              +  + S + E L DL+VL+L   K + +I+   F  L +L  L ++  L  E +   
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 224 LEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISA 282
              +  +  I+L    I  +   +F+ L  L+ L + D          I  + S+  I  
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-----ALTTIHFIPSIPDIFL 388

Query: 283 AGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE- 341
           +G+ +  LP     +N L+ L  +R + L       LL +  L +L +          + 
Sbjct: 389 SGNKLVTLPKINLTAN-LIHLSENRLENL--DILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 342 -IAYLSSLKSLDLRGNNFESLPAS------IKQLSRLCSLDLRRCNMLQSLPALPLC--- 391
             +   SL+ L L  N  +    +       + LS L  L L     L SLP        
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFSHLT 504

Query: 392 -LKYLHLTGCNMLRSLPE--LPLCLQELDATNCNRLQSLPE 429
            L+ L L   N L  L    LP  L+ LD +  N+L +   
Sbjct: 505 ALRGLSLNS-NRLTVLSHNDLPANLEILDISR-NQLLAPNP 543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 84/440 (19%), Positives = 158/440 (35%), Gaps = 45/440 (10%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNG-LEYLPEKLRYLHWD 68
           L LS      +   +F  +  L+LL+         +  P+ +       LP  LR L   
Sbjct: 29  LLLSFNYIRTVTASSFPFLEQLQLLEL------GSQYTPLTIDKEAFRNLP-NLRILDLG 81

Query: 69  TYPLRILPSN-FKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL 126
           +  +  L  + F+   +L EL L F  +      +      +++    L  LS    +SL
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF--RNLKALTRLD-LSKNQIRSL 138

Query: 127 RSFPSNLHFVCPVTINFSYC-VTLIEFPQISG----KITRLYLDQSAIEEVPSSIECLTD 181
              PS        +I+FS   + L+   ++       ++   L  +++    S       
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW---- 194

Query: 182 LEVLDLRDCKRLKRISTRFCKLRSLV-DLFVNGCLNLERFPEILEKMEHLKRINLDGTAI 240
            + ++      L+ +          +   F N     + F   L    H+         I
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS--LILAHHIMGAGFGFHNI 252

Query: 241 TELP-SSFENLP--GLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSAISQLPSSV-A 295
            +   ++F  L    +  L +S    +  L   +   L+ L+ ++ A + I+++      
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311

Query: 296 DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLR 354
             + L +L+ S    L  L  S   GL  +  + +    +  I  +   +L  L++LDLR
Sbjct: 312 GLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 355 GNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLC-- 412
            N   ++      +  +  + L   N L +LP + L    +HL+  N L +L  L     
Sbjct: 371 DNALTTIH----FIPSIPDIFL-SGNKLVTLPKINLTANLIHLSE-NRLENLDILYFLLR 424

Query: 413 ---LQELDATNCNRLQSLPE 429
              LQ L   N NR  S   
Sbjct: 425 VPHLQILIL-NQNRFSSCSG 443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 62/435 (14%), Positives = 123/435 (28%), Gaps = 99/435 (22%)

Query: 9   FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWD 68
            LDLS     +L+   F  + +L++L     K  +I        + L+ L   L Y    
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL--NLSYNLLG 327

Query: 69  TYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS 128
                          +  ++L+ +                      +   +F+  + L++
Sbjct: 328 ELYSSNFYGL---PKVAYIDLQKNH------------------IAIIQDQTFKFLEKLQT 366

Query: 129 FPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLR 188
                                            L L  +A+    ++I  +  +  + L 
Sbjct: 367 ---------------------------------LDLRDNAL----TTIHFIPSIPDIFLS 389

Query: 189 DCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS-- 246
             K L  +         +  L  N   NL+     L ++ HL+ + L+    +       
Sbjct: 390 GNK-LVTLPKINLTANLI-HLSENRLENLDILY-FLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 247 FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFS 306
               P LE+LF+ +             L+              L         L +L  +
Sbjct: 447 PSENPSLEQLFLGEN-----------MLQLAWETELCWDVFEGLSH-------LQVLYLN 488

Query: 307 RCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIK 366
               L SLP  +   L++L  L + +  +  +       ++L+ LD+  N   +    + 
Sbjct: 489 HNY-LNSLPPGVFSHLTALRGLSLNSNRLTVLSHN-DLPANLEILDISRNQLLAPNPDV- 545

Query: 367 QLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTG----------CNMLRSLPELPLCLQEL 416
               L  LD+     +             H             C    S   +   L  L
Sbjct: 546 -FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVS--LFSL 602

Query: 417 DATNCNRLQSLPEIP 431
               C+  + L  + 
Sbjct: 603 STEGCDEEEVLKSLK 617

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 45/235 (19%), Positives = 73/235 (31%), Gaps = 25/235 (10%)

Query: 215 LNLERFPEILEKMEHLKRINLDGTAITELP-SSFENLPGLEELFVSDCSKLDKLPDNI-G 272
            NL + P++L      +R+ L    I  +  SSF  L  L+ L +        +      
Sbjct: 14  CNLTQVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70

Query: 273 NLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCK-GLVSLPRSLLLGLSSLGLLYI 330
           NL +LR +    S I  L          L  L    C      L       L +L  L +
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 331 MNC--AVMEIPQEIAYLSSLKSLDLRGNNFESLPASI---KQLSRLCSLDLRRCNMLQSL 385
                  + +      L+SLKS+D   N    +        Q   L    L   N L S 
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA-NSLYSR 189

Query: 386 PAL----------PLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEI 430
            ++           + L+ L ++G     ++         +  +    L     I
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGW--TVDITGNFSNAISKSQAFSLILAHHI 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 91.1 bits (226), Expect = 6e-20
 Identities = 52/296 (17%), Positives = 106/296 (35%), Gaps = 51/296 (17%)

Query: 158 KITRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCL 215
           ++  L L+   IEE+ +        ++ L +     ++ +    F  +  L  L +    
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN- 133

Query: 216 NLERFP-EILEKMEHLKRINLDGTAITELPSS-FENLPGLEELFVSDCSKLDKLPDN--- 270
           +L   P  I      L  +++    +  +    F+    L+ L +S   +L  +  +   
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIP 192

Query: 271 --------------IGNLESLRHISAAGSAISQLPSSV--------------------AD 296
                         +    ++  + A+ ++I+ +   V                     +
Sbjct: 193 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN 252

Query: 297 SNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGN 356
              L+ +D S  + L  +     + +  L  LYI N  ++ +      + +LK LDL  N
Sbjct: 253 YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311

Query: 357 NFESLPASIKQLSRLCSLDLRRCNMLQSLPALPL-CLKYLHLTG----CNMLRSLP 407
           +   +  +  Q  RL +L L   N + +L       LK L L+     CN LR+L 
Sbjct: 312 HLLHVERNQPQFDRLENLYLDH-NSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALF 366

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 1e-13
 Identities = 68/431 (15%), Positives = 144/431 (33%), Gaps = 59/431 (13%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           +         L      +   + LL     +  EI+           Y    ++ L+   
Sbjct: 56  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID------TYAFAYAH-TIQKLYMGF 108

Query: 70  YPLRILPSN-FKP-KNLVELNLRFSKVEQPWEGEKACVPSSI-QNFKYLSALSFEGCKSL 126
             +R LP + F+    L  L L  + +          +P  I  N   L+ LS      L
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSS--------LPRGIFHNTPKLTTLSMSNNN-L 159

Query: 127 RSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD 186
                +          F    +L            L L  + +  V  S+  +  L   +
Sbjct: 160 ERIEDDT---------FQATTSL----------QNLQLSSNRLTHVDLSL--IPSLFHAN 198

Query: 187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS 246
           +     L  ++       ++ +L  +   ++            L  + L    +T+    
Sbjct: 199 VSYN-LLSTLA----IPIAVEELDASHN-SINVVRG--PVNVELTILKLQHNNLTDTA-W 249

Query: 247 FENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSAISQLPSSVADSNALLILDF 305
             N PGL E+ +S   +L+K+  +    ++ L  +  + + +  L         L +LD 
Sbjct: 250 LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308

Query: 306 SRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE--SLPA 363
           S    L+ + R+       L  LY+ + +++ +        +LK+L L  N+++  SL A
Sbjct: 309 SHNH-LLHVERN-QPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDCNSLRA 364

Query: 364 SIKQLSRLCSLDLRR-CNMLQSLPALPLCLKYLHLTGCNMLRSLPELPL-CLQELDATNC 421
             + ++R    D  + C +   L     C +        +L+ +    +    +     C
Sbjct: 365 LFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRC 424

Query: 422 NRLQSLPEIPS 432
           +   ++  + S
Sbjct: 425 SATDTINSVQS 435

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.6 bits (157), Expect = 3e-11
 Identities = 31/201 (15%), Positives = 76/201 (37%), Gaps = 12/201 (5%)

Query: 240 ITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV-ADSN 298
              + S+ +      ++ +   ++          L + + ++   S + +LP+++     
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 299 ALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNN 357
            + +L+ +  + +  +         ++  LY+   A+  +P  +   +  L  L L  N+
Sbjct: 76  QVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 358 FESLPASI-KQLSRLCSLDLRRCNMLQSLPALPLC----LKYLHLTGCNMLRSLPELPLC 412
             SLP  I     +L +L +   N L+ +          L+ L L+  N L  +    + 
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSS-NRLTHVDLSLIP 192

Query: 413 -LQELDATNCNRLQSLPEIPS 432
            L   + +  N L +L    +
Sbjct: 193 SLFHANVSY-NLLSTLAIPIA 212

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 305 FSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS 364
             R      +  +L        +   M    +    E   L++ K +  + +    LPA+
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69

Query: 365 I-KQLSRLCSLDLRRCNMLQSLPALPLC----LKYLHLTGCNMLRSLPELPLC----LQE 415
           +     ++  L+L     ++ +          ++ L++   N +R LP         L  
Sbjct: 70  LLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTV 127

Query: 416 LDATNCNRLQSLPE 429
           L     N L SLP 
Sbjct: 128 LVLER-NDLSSLPR 140

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.4 bits (224), Expect = 1e-19
 Identities = 49/281 (17%), Positives = 87/281 (30%), Gaps = 29/281 (10%)

Query: 151 EFPQISGKITRLYLDQSAIEEVPSSI-EC-LTDLEVLDLRDCKRLKRISTRFCKLRSLVD 208
           ++     K  +  L      E  S + EC +     L L     L  +         +  
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSSLPDNLPP--QITV 84

Query: 209 LFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLP 268
           L +     L   PE+   +E+L   +     ++ LP    +L   + L V +  +L  LP
Sbjct: 85  LEITQN-ALISLPELPASLEYL---DACDNRLSTLPELPASL---KHLDVDNN-QLTMLP 136

Query: 269 DNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLL 328
           +    LE +   +A  + ++ LP       +L +L     + L  LP        SL  L
Sbjct: 137 ELPALLEYI---NADNNQLTMLPELP---TSLEVLSVRNNQ-LTFLPELP----ESLEAL 185

Query: 329 YIMNCAVMEIPQEIAYLSSLKS----LDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQS 384
            +    +  +P         +        R N    +P +I  L   C++ L   N L S
Sbjct: 186 DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED-NPLSS 244

Query: 385 LPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQ 425
                L  +                      L     + + 
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 2e-17
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 16/173 (9%)

Query: 263 KLDKLPDNIGN-LESLRHISAAGSAISQLPSSVADS--NALLILDFSRCKGLVSLPRSLL 319
            +     +  +  +     +  G   ++  S + +   N    L  +R   L SLP +L 
Sbjct: 21  TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSSLPDNLP 79

Query: 320 LGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRC 379
                + +L I   A++ +P+     +SL+ LD   N   +LP     L  L   D+   
Sbjct: 80  ---PQITVLEITQNALISLPELP---ASLEYLDACDNRLSTLPELPASLKHL---DVDN- 129

Query: 380 NMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS 432
           N L  LP LP  L+Y++    N L  LPELP  L+ L   N N+L  LPE+P 
Sbjct: 130 NQLTMLPELPALLEYINADN-NQLTMLPELPTSLEVLSVRN-NQLTFLPELPE 180

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.5 bits (167), Expect = 1e-12
 Identities = 64/371 (17%), Positives = 99/371 (26%), Gaps = 99/371 (26%)

Query: 27  NMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVE 86
           N  +L    FY      I        +  +   EK      +      L          E
Sbjct: 9   NNFSLSQNSFYN----TISGTYADYFSAWDKW-EKQALPGENRNEAVSLLKECLINQFSE 63

Query: 87  LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYC 146
           L L                                    L S P N              
Sbjct: 64  LQLNRLN--------------------------------LSSLPDN-------------- 77

Query: 147 VTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSL 206
                   +  +IT L + Q+A+  +P     L  L+  D     RL  +      L+ L
Sbjct: 78  --------LPPQITVLEITQNALISLPELPASLEYLDACDN----RLSTLPELPASLKHL 125

Query: 207 VDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDK 266
            D+  N    L   PE+      L+ IN D   +T LP        LE L V +  +L  
Sbjct: 126 -DVDNN---QLTMLPELPAL---LEYINADNNQLTMLPEL---PTSLEVLSVRNN-QLTF 174

Query: 267 LPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLG 326
           LP+   +LE+L     + + +  LP+                        + +       
Sbjct: 175 LPELPESLEAL---DVSTNLLESLPAVPVR--------------NHHSEETEI------- 210

Query: 327 LLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNMLQSL 385
                   +  IP+ I  L    ++ L  N   S    S+ Q +        R     S 
Sbjct: 211 FFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

Query: 386 PALPLCLKYLH 396
                  + L 
Sbjct: 271 GQQNTLHRPLA 281

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 76/402 (18%), Positives = 129/402 (32%), Gaps = 43/402 (10%)

Query: 10  LDLS--KIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHW 67
           LDLS   +  I   PGAF  +   +L          + +  +Q   GLE     L     
Sbjct: 182 LDLSLNPMNFI--QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 68  DTYPLRILPSNFKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL 126
           +    +   S  +   NL     R + ++   +     +         +S+ S       
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD----IIDLFNCLTNVSSFSLVSVTIE 295

Query: 127 RSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD 186
           R               FSY                L L      + P+    L  L+ L 
Sbjct: 296 RVKD------------FSYNFGW----------QHLELVNCKFGQFPTL--KLKSLKRLT 331

Query: 187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS 246
               K     S         +DL  NG        +       LK ++L    +  + S+
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 247 FENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSAISQLPSSV-ADSNALLILD 304
           F  L  LE L     +       ++  +L +L ++  + +      + +    ++L +L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 305 FSRCKGLVSLPRSLLLGLSSLGLLYIMNCA-VMEIPQEIAYLSSLKSLDLRGNNFESL-P 362
            +      +    +   L +L  L +  C      P     LSSL+ L++  NNF SL  
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 363 ASIKQLSRLCSLDLRRCNMLQSLPA-----LPLCLKYLHLTG 399
              K L+ L  LD    N + +         P  L +L+LT 
Sbjct: 512 FPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 79/454 (17%), Positives = 140/454 (30%), Gaps = 57/454 (12%)

Query: 9   FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWD 68
            LDLS     +L   +F +   L++L     +   IE          + L   L  L   
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE------DGAYQSLS-HLSTLILT 84

Query: 69  TYPLRILPSN--FKPKNLVELNL---RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGC 123
             P++ L         +L +L       + +E             I + K L  L+    
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLE----------NFPIGHLKTLKELNVAHN 134

Query: 124 KSLRSFPSNLHFV-CP--VTINFSYCV-------TLIEFPQISGKITRLYLDQSAIEEVP 173
             ++SF    +F        ++ S           L    Q+      L L  + +  + 
Sbjct: 135 L-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 174 SSIECLTDLEVLDLRDCKRLKRISTRFC------KLRSLVDLFVNGCLNLERFPE-ILEK 226
                   L  L LR+      +           ++  LV        NLE+F +  LE 
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 227 MEHLKRINLDGTAIT----ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISA 282
           + +L         +     ++   F  L  +    +   + ++++ D        +H+  
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKD-FSYNFGWQHLEL 311

Query: 283 AGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI 342
                 Q P+    S  L  L F+  KG  +     L  L  L L            Q  
Sbjct: 312 VNCKFGQFPTLKLKS--LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 343 AYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC----LKYLHLT 398
              +SLK LDL  N   ++ ++   L +L  LD +  N+ Q            L YL ++
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 399 GCNMLRSLPELPLC----LQELDATNCNRLQSLP 428
                R            L+ L     +  ++  
Sbjct: 430 H-THTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 50/327 (15%), Positives = 102/327 (31%), Gaps = 46/327 (14%)

Query: 149 LIEFPQ-ISGKITRLYLDQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSL 206
             + P  +      L L  + +  +   S     +L+VLDL  C+        +  L  L
Sbjct: 19  FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 207 VDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITEL-PSSFENLPGLEELFVSDCS-KL 264
             L + G             +  L+++    T +  L      +L  L+EL V+    + 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 265 DKLPDNIGNLESLRHISAAGSAISQLPS-----------------------SVADSNA-- 299
            KLP+   NL +L H+  + + I  +                         +     A  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 300 ---LLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ----EIAYLSSLKSLD 352
              L  L        +++ ++ + GL+ L +  ++             + + L  L +L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 353 LRGNNFESL-------PASIKQLSRLCSLDLRRCNMLQSLPALPLC--LKYLHLTGCNML 403
           +       L             L+ + S  L     ++ +         ++L L  C   
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS-VTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 404 RSLPELPLCLQELDATNCNRLQSLPEI 430
           +        L+ L  T+     +  E+
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEV 344

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 14/205 (6%)

Query: 215 LNLERFPEILEKMEHLKRINLDGTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGN 273
           LN  + P+ L      K ++L    +  L   SF + P L+ L +S C           +
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 274 LESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMN 332
           L  L  +   G+ I  L     +  ++L  L       L SL    +  L +L  L + +
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH 133

Query: 333 C--AVMEIPQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRL----CSLDLRRCNMLQSL 385
                 ++P+  + L++L+ LDL  N  +S+    ++ L ++     SLDL    M    
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 386 PAL--PLCLKYLHLTGCNMLRSLPE 408
           P     + L  L L       ++ +
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMK 218

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 309 KGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESL-PASIKQ 367
                +P +L     +L L +  N               L+ LDL     +++   + + 
Sbjct: 17  LNFYKIPDNLPFSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 368 LSRLCSLDLRRCNMLQSLPALPLC----LKYLHLTGCNMLRSLPELPLC----LQELDAT 419
           LS L +L L   N +QSL          L+ L     N L SL   P+     L+EL+  
Sbjct: 75  LSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVA 132

Query: 420 NCNRLQSLP 428
           + N +QS  
Sbjct: 133 H-NLIQSFK 140

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.6 bits (220), Expect = 3e-19
 Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 16/238 (6%)

Query: 158 KITRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCL 215
            +T+L + ++ I  +   + + L +L+ L++ D   L  IS R F  L SL  L +  C 
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC- 162

Query: 216 NLERFP-EILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNIGN 273
           NL   P E L  +  L  + L    I  +   SF+ L  L+ L +S    LD +  N   
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 274 LESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMN 332
             +L  +S     ++ +P         L  L+ S    + ++  S+L  L  L  + ++ 
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVG 281

Query: 333 CAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRR------CNML 382
             +  +       L+ L+ L++ GN   +L  S+   +  L +L L        C +L
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL 339

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 27/220 (12%)

Query: 215 LNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNI-G 272
                 PE +      + ++L    I  L    F + P LEEL +++   +  +      
Sbjct: 21  KRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFN 77

Query: 273 NLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM 331
           NL +LR +    + +  +P  V    + L  LD S  K +V L   +   L +L  L + 
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVG 136

Query: 332 NCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQSLPALP 389
           +  ++ I     + L+SL+ L L   N  S+P  ++  L  L  L LR    + ++    
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-LNINAIRD-- 193

Query: 390 LCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPE 429
                         + L  L    + L+ ++   L ++  
Sbjct: 194 -----------YSFKRLYRL----KVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.1 bits (185), Expect = 8e-15
 Identities = 62/307 (20%), Positives = 104/307 (33%), Gaps = 49/307 (15%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           L+L++     ++PGAF N+ NLR L     +   I             L   L  L    
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP------LGVFTGLS-NLTKLDISE 113

Query: 70  YPLRILPSN-FKP-KNLVELNL---RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCK 124
             + IL    F+   NL  L +       +             +      L  L+ E C 
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYIS----------HRAFSGLNSLEQLTLEKCN 163

Query: 125 SLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSI-ECLTDLE 183
            L S P+            S+   L            L L    I  +     + L  L+
Sbjct: 164 -LTSIPTEA---------LSHLHGL----------IVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 184 VLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAITE 242
           VL++     L  ++       +L  L +  C NL   P   +  + +L+ +NL    I+ 
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 243 LPS-SFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSAISQLPSSVADSN-A 299
           +       L  L+E+ +    +L  +       L  LR ++ +G+ ++ L  SV  S   
Sbjct: 263 IEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 300 LLILDFS 306
           L  L   
Sbjct: 322 LETLILD 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.8 bits (218), Expect = 4e-19
 Identities = 58/275 (21%), Positives = 105/275 (38%), Gaps = 33/275 (12%)

Query: 158 KITRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCL 215
            I +LY+  +AI  +P  + + +  L VL L     L  +    F     L  L ++   
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN- 151

Query: 216 NLERFP-EILEKMEHLKRINLDGTAITELP-----------------SSFENLPGLEELF 257
           NLER   +  +    L+ + L    +T +                  S+      +EEL 
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211

Query: 258 VSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRS 317
            S    ++ +   +     L  +    + ++     + +   L+ +D S  + L  +   
Sbjct: 212 ASHN-SINVVRGPV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNE-LEKIMYH 266

Query: 318 LLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLR 377
             + +  L  LYI N  ++ +      + +LK LDL  N+   +  +  Q  RL +L L 
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326

Query: 378 RCNMLQSLPALPLC-LKYLHLTG----CNMLRSLP 407
             N + +L       LK L L+     CN LR+L 
Sbjct: 327 H-NSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALF 360

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.0 bits (218), Expect = 5e-19
 Identities = 41/280 (14%), Positives = 99/280 (35%), Gaps = 21/280 (7%)

Query: 158 KITRLYLDQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLN 216
            +  L L  + + ++  + +   T LE+L+L     L         L +L  L +N    
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN-Y 91

Query: 217 LERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDN-IGNLE 275
           ++           ++ ++     I+ +  S     G + +++++  K+  L D   G   
Sbjct: 92  VQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRS 144

Query: 276 SLRHISAAGSAISQLPSS--VADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC 333
            ++++    + I  +  +   A S+ L  L+      +  +   ++   + L  L + + 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVF--AKLKTLDLSSN 201

Query: 334 AVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLR----RCNMLQSLPALP 389
            +  +  E    + +  + LR N    +  +++    L   DLR     C  L+   +  
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 390 LCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPE 429
             ++ +       L    E    +  L        + LP 
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 32/279 (11%), Positives = 88/279 (31%), Gaps = 13/279 (4%)

Query: 158 KITRLYLDQSAIEEVPSS--IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL 215
           ++  L L  + I+ V  +        LE L+L+    +  +  +      L  L ++   
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLKTLDLSSN- 201

Query: 216 NLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCS-KLDKLPDNIGNL 274
            L       +    +  I+L    +  +  +      LE   +         L D     
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 275 ESLRHISAAG-SAISQLPSSVADSNALLILDFSRCKGLVS--LPRSLLLGLSSLGLLYIM 331
           + ++ ++      ++           L       C+ L +    R + L      LL   
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 332 NCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPALPL 390
                 +  E    +  + +D     + ++   +  +     +L+ ++   L    +   
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK-KALDEQVSNGR 380

Query: 391 CLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPE 429
              +  L G  + +++ ++ L     + +    L+++ +
Sbjct: 381 -RAHAELDG-TLQQAVGQIELQHATEEQSPLQLLRAIVK 417

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 36/220 (16%), Positives = 83/220 (37%), Gaps = 23/220 (10%)

Query: 220 FPEILEKMEHLKRINLDGTAITELPSS-FENLPGLEELFVSDCSKLDKLPDN-IGNLESL 277
             EI +     K   +  +++ +  +S  ++   ++EL +S    L ++    +     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 278 RHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME 337
             ++ + + + +    +   + L  LD +    +  L         S+  L+  N  +  
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELL-----VGPSIETLHAANNNISR 113

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQSLPALPLC----- 391
           +          K++ L  N    L        SR+  LDL+  N + ++    L      
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDT 170

Query: 392 LKYLHLTGCNMLRSLPELPLC--LQELDATNCNRLQSLPE 429
           L++L+L   N +  +    +   L+ LD ++ N+L  +  
Sbjct: 171 LEHLNLQY-NFIYDVKGQVVFAKLKTLDLSS-NKLAFMGP 208

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPALPLC----L 392
           I +     +  K   +  ++ +   AS+ +    +  LDL   N L  + A  L     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKL 60

Query: 393 KYLHLTGCNMLRSLPELPL--CLQELDATNCNRLQSLPEIPS 432
           + L+L+  N+L    +L     L+ LD  N N +Q L   PS
Sbjct: 61  ELLNLSS-NVLYETLDLESLSTLRTLDLNN-NYVQELLVGPS 100

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 42/263 (15%)

Query: 156 SGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGC 214
           S + +++   +  + EVP  I   T+  +L+L +  +++ I    F  LR L  L ++  
Sbjct: 42  SNQFSKVICVRKNLREVPDGI--STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN 98

Query: 215 LNLERFPE-ILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNI- 271
            ++          + +L  + L    +T +P+ +F  L  L+EL++ +   ++ +P    
Sbjct: 99  -HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAF 156

Query: 272 GNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM 331
             + SLR                        LD    K L  +      GLS+L  L + 
Sbjct: 157 NRIPSLRR-----------------------LDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 332 NCAVMEIPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQSLPA--- 387
            C + EIP  +  L  L  LDL GN+  ++   S + L  L  L + + + +Q +     
Sbjct: 194 MCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAF 251

Query: 388 --LPLCLKYLHLTGCNMLRSLPE 408
             L   L  ++L   N L  LP 
Sbjct: 252 DNLQS-LVEINLAH-NNLTLLPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 53/282 (18%), Positives = 96/282 (34%), Gaps = 69/282 (24%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           L+L + +   +   +F ++ +L +L+        IE            L   L  L    
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE------IGAFNGLA-NLNTLELFD 121

Query: 70  YPLRILPSN-FKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR 127
             L  +P+  F     L EL LR + +E                   + + +F    SLR
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIES------------------IPSYAFNRIPSLR 163

Query: 128 SFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQS-AIEEVPSSI-ECLTDLEVL 185
                                            RL L +   +  +     E L++L  L
Sbjct: 164 ---------------------------------RLDLGELKRLSYISEGAFEGLSNLRYL 190

Query: 186 DLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAITELP 244
           +L  C  L+ I      L  L +L ++G  +L        + + HL+++ +  + I  + 
Sbjct: 191 NLAMC-NLREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 245 S-SFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAG 284
             +F+NL  L E+ ++    L  LP ++   L  L  I    
Sbjct: 248 RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 55/257 (21%), Positives = 88/257 (34%), Gaps = 65/257 (25%)

Query: 9   FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWD 68
            L LS+     ++ GAF  ++NL  L+ +  +   I            YL  KL+ L   
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP------NGAFVYLS-KLKELWLR 144

Query: 69  TYPLRILPSN-FKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL 126
             P+  +PS  F    +L  L+L                   ++   Y+S  +FEG  +L
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDL-----------------GELKRLSYISEGAFEGLSNL 187

Query: 127 RSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD 186
           R                                  L L    + E+P ++  L  L+ LD
Sbjct: 188 RY---------------------------------LNLAMCNLREIP-NLTPLIKLDELD 213

Query: 187 LRDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAITELP 244
           L     L  I    F  L  L  L++     ++       + ++ L  INL    +T LP
Sbjct: 214 LSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLP 271

Query: 245 SS-FENLPGLEELFVSD 260
              F  L  LE + +  
Sbjct: 272 HDLFTPLHHLERIHLHH 288

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.0 bits (211), Expect = 4e-18
 Identities = 71/377 (18%), Positives = 145/377 (38%), Gaps = 57/377 (15%)

Query: 60  EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALS 119
           +++  L  D   ++ +       NL ++N   +++            + I   K L+ L 
Sbjct: 46  DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL------------TDITPLKNLTKL- 92

Query: 120 FEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISG--KITRLYLDQSAIEEVPSSIE 177
                              V I  +    + +   ++    +T L L  + I ++   ++
Sbjct: 93  -------------------VDILMNNN-QIADITPLANLTNLTGLTLFNNQITDID-PLK 131

Query: 178 CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG 237
            LT+L  L+L     +  IS     L SL  L      N     + L  +  L+R+++  
Sbjct: 132 NLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFG---NQVTDLKPLANLTTLERLDISS 186

Query: 238 TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADS 297
             ++++      L  LE L  ++  ++  +   +G L +L  +S  G+ +  +  ++A  
Sbjct: 187 NKVSDIS-VLAKLTNLESLIATNN-QISDIT-PLGILTNLDELSLNGNQLKDIG-TLASL 242

Query: 298 NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNN 357
             L  LD +  + + +L    L GL+ L  L +    +  I   +A L++L +L+L  N 
Sbjct: 243 TNLTDLDLANNQ-ISNLAP--LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQ 298

Query: 358 FESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC--LKYLHLTGCNMLRSLPELPLC--L 413
            E +   I  L  L  L L   N +  +  +     L+ L     N +  +  L     +
Sbjct: 299 LEDIS-PISNLKNLTYLTLYF-NNISDISPVSSLTKLQRLFFYN-NKVSDVSSLANLTNI 355

Query: 414 QELDATNCNRLQSLPEI 430
             L A + N++  L  +
Sbjct: 356 NWLSAGH-NQISDLTPL 371

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 69/402 (17%), Positives = 146/402 (36%), Gaps = 37/402 (9%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           ++ S  +  ++ P    N++ L  +     +  +I          L  L   L  L    
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--------PLANLT-NLTGLTLFN 121

Query: 70  YPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSF 129
             +  +       NL  L L  + +            S++     L  LSF    +    
Sbjct: 122 NQITDIDPLKNLTNLNRLELSSNTISDI---------SALSGLTSLQQLSFGNQVTDLKP 172

Query: 130 PSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRD 189
            +NL  +  + I+ +    +    +++  +  L    + I ++   +  LT+L+ L L  
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDITP-LGILTNLDELSLNG 230

Query: 190 CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFEN 249
            + LK I T    L +L DL +     +      L  +  L  + L    I+ +      
Sbjct: 231 NQ-LKDIGT-LASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQISNISP-LAG 285

Query: 250 LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCK 309
           L  L  L +++  +L+ +   I NL++L +++   + IS + S V+    L  L F   K
Sbjct: 286 LTALTNLELNEN-QLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNK 342

Query: 310 GLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLS 369
            +  +    L  L+++  L   +  + ++   +A L+ +  L L    + + P + K   
Sbjct: 343 -VSDVS--SLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANV 398

Query: 370 RLCSLDLRRCNMLQSLPALPLC--LKYLHLTGCNMLRSLPEL 409
            + +        L +   +          +T  N+     E+
Sbjct: 399 SIPNTVKNVTGALIAPATISDGGSYTEPDITW-NLPSYTNEV 439

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 9/116 (7%)

Query: 319 LLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRR 378
              L+      +    V +       L  + +L       +S+   ++ L+ L  ++   
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSN 77

Query: 379 CNMLQSLPALPLC--LKYLHLTGCNMLRSLPELPLC--LQELDATNCNRLQSLPEI 430
            N L  +  L     L  + +   N +  +  L     L  L   N N++  +  +
Sbjct: 78  -NQLTDITPLKNLTKLVDILMNN-NQIADITPLANLTNLTGLTLFN-NQITDIDPL 130

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.3 bits (199), Expect = 7e-17
 Identities = 69/368 (18%), Positives = 127/368 (34%), Gaps = 55/368 (14%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
             L K    ++       + ++  L     K   I+        G+EYL   L YL+ + 
Sbjct: 27  AVLQKASVTDVVT--QEELESITKLVVAGEKVASIQ--------GIEYLT-NLEYLNLNG 75

Query: 70  YPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSF 129
             +  +        L  L +  +K+            S++QN   L  L       +   
Sbjct: 76  NQITDISPLSNLVKLTNLYIGTNKITDI---------SALQNLTNLRELYLNEDN-ISDI 125

Query: 130 PSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRD 189
                         +    +            L L  +      S +  +T L  L + +
Sbjct: 126 S-----------PLANLTKM----------YSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164

Query: 190 CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFEN 249
            K +K ++     L  L  L +N   N       L  +  L         IT++     N
Sbjct: 165 SK-VKDVTP-IANLTDLYSLSLNY--NQIEDISPLASLTSLHYFTAYVNQITDITP-VAN 219

Query: 250 LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCK 309
           +  L  L + +  K+  L   + NL  L  +    + IS + + V D   L +L+    +
Sbjct: 220 MTRLNSLKIGNN-KITDLS-PLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQ 276

Query: 310 GLVSLPRSLLLGLSSLGLLYIMNCAV-MEIPQEIAYLSSLKSLDLRGNNFESLPASIKQL 368
            +  +  S+L  LS L  L++ N  +  E  + I  L++L +L L  N+   +   +  L
Sbjct: 277 -ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASL 332

Query: 369 SRLCSLDL 376
           S++ S D 
Sbjct: 333 SKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.1 bits (183), Expect = 8e-15
 Identities = 39/211 (18%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 224 LEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAA 283
              +    R  L   ++T++ +  E L  + +L V+   K+  +   I  L +L +++  
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGE-KVASIQG-IEYLTNLEYLNLN 74

Query: 284 GSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIA 343
           G+ I+ +   +++   L  L     K +  +    L  L++L  LY+    + +I   +A
Sbjct: 75  GNQITDISP-LSNLVKLTNLYIGTNK-ITDISA--LQNLTNLRELYLNEDNISDIS-PLA 129

Query: 344 YLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC--LKYLHLTGCN 401
            L+ + SL+L  N+  S  + +  ++ L  L +   + ++ +  +     L  L L   N
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTPIANLTDLYSLSL-NYN 187

Query: 402 MLRSLPELPLC--LQELDATNCNRLQSLPEI 430
            +  +  L     L    A   N++  +  +
Sbjct: 188 QIEDISPLASLTSLHYFTAYV-NQITDITPV 217

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 26/149 (17%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL 217
            +       + I ++   +  +T L  L + +  ++  +S     L  L  L +     +
Sbjct: 200 SLHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTN-QI 255

Query: 218 ERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESL 277
                 ++ +  LK +N+    I+++ S   NL  L  LF+++    ++  + IG L +L
Sbjct: 256 SDINA-VKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 278 RHISAAGSAISQLPSSVADSNALLILDFS 306
             +  + + I+ +   +A  + +   DF+
Sbjct: 314 TTLFLSQNHITDIR-PLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 37/251 (14%), Positives = 84/251 (33%), Gaps = 45/251 (17%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           L+L     ++ D    +NM+ L  L     K  ++          +  L   L  L  + 
Sbjct: 137 LNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVT--------PIANLT-DLYSLSLNY 186

Query: 70  YPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSF 129
             +  +       +L       +++            + + N   L++L     K +   
Sbjct: 187 NQIEDISPLASLTSLHYFTAYVNQITDI---------TPVANMTRLNSLKIGNNK-ITDL 236

Query: 130 PSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRD 189
                         +    L          T L +  + I ++ + ++ LT L++L++  
Sbjct: 237 S-----------PLANLSQL----------TWLEIGTNQISDINA-VKDLTKLKMLNVGS 274

Query: 190 CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFEN 249
            + +  IS     L  L  LF+N         E++  + +L  + L    IT++     +
Sbjct: 275 NQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LAS 331

Query: 250 LPGLEELFVSD 260
           L  ++    ++
Sbjct: 332 LSKMDSADFAN 342

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 7e-16
 Identities = 70/286 (24%), Positives = 120/286 (41%), Gaps = 30/286 (10%)

Query: 158 KITRLYLDQSAIE-EVPSSIECLTDLEVLDLRDCKRLKRI-STRFCKLRSLVDLFVNGCL 215
            +  L +  + +  +   +I   T+L++L++   + +  I       L+ L  L  N   
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL-SLAEN--- 279

Query: 216 NLE-RFP-EILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLP-DNI 271
                 P  +    + L  ++L G      +P  F +   LE L +S  +   +LP D +
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

Query: 272 GNLESLRHISAAGSAIS-QLPSSVAD-SNALLILDFSRCKGLVSLPRSLL-LGLSSLGLL 328
             +  L+ +  + +  S +LP S+ + S +LL LD S       +  +L     ++L  L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 329 YIMNCAVM-EIPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNML---- 382
           Y+ N     +IP  ++  S L SL L  N    ++P+S+  LS+L  L L   NML    
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL-NMLEGEI 458

Query: 383 -QSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSL 427
            Q L  +   L+ L L   N L    E+P  L      NC  L  +
Sbjct: 459 PQELMYVKT-LETLILDF-NDLTG--EIPSGLS-----NCTNLNWI 495

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 7e-16
 Identities = 76/390 (19%), Positives = 130/390 (33%), Gaps = 68/390 (17%)

Query: 83  NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTIN 142
            +  ++L       P     + V SS+ +   L +L         S           +++
Sbjct: 51  KVTSIDLSSK----PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106

Query: 143 FSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIST-RFC 201
            S          +SG +T             +S+   + L+ L++               
Sbjct: 107 LSRN-------SLSGPVT-----------TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148

Query: 202 KLRSLVDLFVNGC-LNLERFPEI--LEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELF 257
           KL SL  L ++   ++          +    LK + + G  I+ ++  S      LE L 
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLD 206

Query: 258 VSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFS---------- 306
           VS  +    +P  +G+  +L+H+  +G+ +S     +++    L +L+ S          
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

Query: 307 -RCKGLVSL-----------PRSLLLGLSSLGLLYIMNCAVM-EIPQEIAYLSSLKSLDL 353
              K L  L           P  L     +L  L +        +P      S L+SL L
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

Query: 354 RGNNFE-SLPA-SIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCNMLRSLP 407
             NNF   LP  ++ ++  L  LDL        LP     L   L  L L+  N    + 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

Query: 408 E-----LPLCLQELDATNCNRLQSLPEIPS 432
                     LQEL   N N      +IP 
Sbjct: 386 PNLCQNPKNTLQELYLQN-NGFTG--KIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 8e-12
 Identities = 46/236 (19%), Positives = 89/236 (37%), Gaps = 16/236 (6%)

Query: 201 CKLRSLVDLFVNGC---LNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELF 257
           C+   +  + ++     +        L  +  L+ + L  + I    S F+    L  L 
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106

Query: 258 VSDCSKLDKLPD--NIGNLESLRHISAAGSAISQL--PSSVADSNALLILDFSRCK--GL 311
           +S  S    +    ++G+   L+ ++ + + +      S     N+L +LD S     G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 312 VSLPRSLLLGLSSLGLLYIMNCAVM-EIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSR 370
             +   L  G   L  L I    +  ++   ++   +L+ LD+  NNF +    +   S 
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSA 224

Query: 371 LCSLDLRRCNMLQSLPA-LPLC--LKYLHLTGCNMLRSLPELPLC-LQELDATNCN 422
           L  LD+    +       +  C  LK L+++    +  +P LPL  LQ L      
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 280

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 38/219 (17%), Positives = 72/219 (32%), Gaps = 25/219 (11%)

Query: 171 EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE-RFPEILEKMEH 229
           E+PS +   T+L  + L + +    I     +L +L  L ++   +     P  L     
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN-SFSGNIPAELGDCRS 539

Query: 230 LKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS 288
           L  ++L+       +P++     G             K    I N    +    AG+ + 
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA----GKRYVYIKNDGMKKECHGAGNLLE 595

Query: 289 ---QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVM-------EI 338
                   +   +     + +                 + G +  ++   M        I
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITS----RVYGGHTSPTFDNNGSMMFLD---MSYNMLSGYI 648

Query: 339 PQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDL 376
           P+EI  +  L  L+L  N+   S+P  +  L  L  LDL
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 60/248 (24%), Positives = 86/248 (34%), Gaps = 40/248 (16%)

Query: 149 LIEFPQ-ISGKITRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTR-FCKLRS 205
           L   P  I     R++L  + I  VP++      +L +L L     L RI    F  L  
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLAL 81

Query: 206 LVDLFVNGCLNLERFP-EILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSK 263
           L  L ++    L          +  L  ++LD   + EL    F  L  L+ L++ D   
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-A 140

Query: 264 LDKLPDNI-GNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGL 322
           L  LPD+   +L +L H                     L L  +R   + S+P     GL
Sbjct: 141 LQALPDDTFRDLGNLTH---------------------LFLHGNR---ISSVPERAFRGL 176

Query: 323 SSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRR-- 378
            SL  L +    V  +       L  L +L L  NN  +LP      L  L  L L    
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 379 ----CNML 382
               C   
Sbjct: 237 WVCDCRAR 244

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 19/133 (14%)

Query: 309 KGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-K 366
           +GL ++P  +    ++   +++    +  +P        +L  L L  N    + A+   
Sbjct: 21  QGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 367 QLSRLCSLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPE-----LPLCLQEL 416
            L+ L  LDL     L+S+       L   L  LHL     L+ L       L   LQ L
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDR-CGLQELGPGLFRGLAA-LQYL 134

Query: 417 DATNCNRLQSLPE 429
              + N LQ+LP+
Sbjct: 135 YLQD-NALQALPD 146

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 43/258 (16%), Positives = 74/258 (28%), Gaps = 67/258 (25%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           + L   +  ++   +F    NL +L  +      I+            L   L  L    
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARID------AAAFTGLA-LLEQLDLSD 89

Query: 70  -YPLRILPSN-FKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL 126
              LR +    F     L  L+L                       + L    F G  +L
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCG------------------LQELGPGLFRGLAAL 131

Query: 127 RSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSI-ECLTDLEVL 185
           +                                  LYL  +A++ +P      L +L  L
Sbjct: 132 Q---------------------------------YLYLQDNALQALPDDTFRDLGNLTHL 158

Query: 186 DLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAITEL 243
            L    R+  +  R F  L SL  L ++    +          +  L  + L    ++ L
Sbjct: 159 FLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 244 PSS-FENLPGLEELFVSD 260
           P+     L  L+ L ++D
Sbjct: 217 PTEALAPLRALQYLRLND 234

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 47/285 (16%), Positives = 91/285 (31%), Gaps = 36/285 (12%)

Query: 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL 217
            +T L   ++ + E+   +   T L  LD    K++ ++         L  L  +    +
Sbjct: 128 LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-KI 182

Query: 218 ERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESL 277
                 + + + L R+N D   IT+L         L  L  S   KL ++   +  L  L
Sbjct: 183 TELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQL 235

Query: 278 RHISAAGSAISQLPSSV--------ADSNALLILDFSRCKGLVSL--------PRSLLLG 321
            +   + + +++L  S              LL +D +    L+              +  
Sbjct: 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTH 295

Query: 322 LSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM 381
            + L LL      + E+   ++    L  L L       L   +   ++L SL       
Sbjct: 296 NTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVN-AH 350

Query: 382 LQSLPALPLC--LKYLHLTGCNMLRSLPELPLCLQELDATNCNRL 424
           +Q   ++     L            ++P+  L    L       L
Sbjct: 351 IQDFSSVGKIPALNNNFEAE-GQTITMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 54/273 (19%), Positives = 91/273 (33%), Gaps = 26/273 (9%)

Query: 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL 217
            +T+L    + I  +   +   T+L  L     K L  +      L  L  L  +    L
Sbjct: 65  GLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN-KL 118

Query: 218 ERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESL 277
            +    + +   L  +N     +TE+     +   L EL      K+ KL   +     L
Sbjct: 119 TKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQL 172

Query: 278 RHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME 337
             +  + + I++L   V+ +  L  L+      +  L    L     L  L   +  + E
Sbjct: 173 TTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLD---LNQNIQLTFLDCSSNKLTE 226

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC-LKYLH 396
           I   +  L+ L   D   N    L  S   LS+L +L   +   L  +       L Y  
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQ-TDLLEIDLTHNTQLIYFQ 281

Query: 397 LTGCNMLRSLPELPL-CLQELDATNCNRLQSLP 428
             GC  ++ L       L  LD      +  L 
Sbjct: 282 AEGCRKIKELDVTHNTQLYLLDCQA-AGITELD 313

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 47/284 (16%), Positives = 85/284 (29%), Gaps = 46/284 (16%)

Query: 108 SIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQS 167
                K ++ L       L +   +  F     ++ S    L           RL  D +
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTL--DCSFNKITELDVSQNKLL----------NRLNCDTN 201

Query: 168 AIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKM 227
            I ++   +     L  LD    K L  I      L  L     +    L      +  +
Sbjct: 202 NITKLD--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVN-PLTELD--VSTL 253

Query: 228 EHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAI 287
             L  ++   T + E+  +  +   L       C K+ +L  ++ +   L  +    + I
Sbjct: 254 SKLTTLHCIQTDLLEIDLT--HNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGI 309

Query: 288 SQLPSS--------VADSNALLILDFSRCKGLVSLPRS--------LLLGLSSLGLLYIM 331
           ++L  S          ++  L  LD S    L SL            +  + +L   +  
Sbjct: 310 TELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEA 369

Query: 332 NCAVMEIPQEIAYLSSL------KSLDLRGNNFESLPASIKQLS 369
               + +P+E    +SL        LD  GN     P       
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYD 413

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 322 LSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM 381
           L++L  L   N ++ ++   I  L+ L  L    NN  +L   + Q + L  L     N 
Sbjct: 41  LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDS-NK 96

Query: 382 LQSLPALPLC-LKYLHLTGCNMLRSLPELPL-CLQELDATNCNRLQSLP 428
           L +L   PL  L YL+    N L  L       L  L+    N L  + 
Sbjct: 97  LTNLDVTPLTKLTYLNCDT-NKLTKLDVSQNPLLTYLNCAR-NTLTEID 143

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 46/221 (20%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 214 CLNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNI- 271
           C +++R P +       + + L  T +  +PS +F NLP +  ++VS    L +L  +  
Sbjct: 20  CKDIQRIPSLPP---STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76

Query: 272 GNLESLRHISAAGS-AISQLPSSV-ADSNALLILDFSRCKGLVSLP-RSLLLGLSSLGLL 328
            NL  + HI    +  ++ +      +   L  L       L   P  + +       +L
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFIL 135

Query: 329 YIM-NCAVMEIPQEI-AYLSS-LKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSL 385
            I  N  +  IP      L +   +L L  N F S+       ++L ++ L +   L  +
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195

Query: 386 PA-----LPLCLKYLHLTGCNMLRSLPELPLC-LQELDATN 420
                  +      L ++    + +LP   L  L+EL A N
Sbjct: 196 DKDAFGGVYSGPSLLDVSQ-TSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 36/219 (16%), Positives = 82/219 (37%), Gaps = 10/219 (4%)

Query: 146 CVTLIEFPQISGKITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTR-FCKL 203
           C  +   P +      L L ++ +  +PS +   L ++  + +     L+++ +  F  L
Sbjct: 20  CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL 79

Query: 204 RSLVDLFVNGCLNLERFP-EILEKMEHLKRINLDGTAITELP--SSFENLPGLEELFVSD 260
             +  + +    NL     + L+++  LK + +  T +   P  +   +      L ++D
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

Query: 261 CSKLDKLPDNI--GNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSL 318
              +  +P N   G       +    +  + +     +   L  +  ++ K L  + +  
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 319 LLGL-SSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGN 356
             G+ S   LL +   +V  +P +   L  LK L  R  
Sbjct: 200 FGGVYSGPSLLDVSQTSVTALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 19/136 (13%)

Query: 307 RCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNN-FESLPAS 364
            CK +  +P        S   L ++   +  IP    + L ++  + +  +   + L + 
Sbjct: 19  TCKDIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH 74

Query: 365 I-KQLSRLCSLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPELPLC-----L 413
               LS++  +++R    L  +       LPL LK+L +     L+  P+L         
Sbjct: 75  SFYNLSKVTHIEIRNTRNLTYIDPDALKELPL-LKFLGIFN-TGLKMFPDLTKVYSTDIF 132

Query: 414 QELDATNCNRLQSLPE 429
             L+ T+   + S+P 
Sbjct: 133 FILEITDNPYMTSIPV 148

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 8e-15
 Identities = 54/275 (19%), Positives = 93/275 (33%), Gaps = 56/275 (20%)

Query: 162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERF 220
               +S + E+PS +    +   L     K L+ I    F     L  + ++    LE  
Sbjct: 14  FLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 221 PEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRH 279
                                     F NLP L E+ +   + L  +      NL +L++
Sbjct: 71  E----------------------ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108

Query: 280 ISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEI 338
           +  + + I  LP      S   ++LD      + ++ R+  +GLS               
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE------------- 155

Query: 339 PQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPL----CLKY 394
                       L L  N  + +  S    ++L  L+L   N L+ LP            
Sbjct: 156 ---------SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 395 LHLTGCNMLRSLPELPL-CLQELDATNCNRLQSLP 428
           L ++    + SLP   L  L++L A +   L+ LP
Sbjct: 207 LDISR-TRIHSLPSYGLENLKKLRARSTYNLKKLP 240

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 30/184 (16%), Positives = 66/184 (35%), Gaps = 17/184 (9%)

Query: 260 DCS--KLDKLPDNIGNLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPR 316
            C   K+ ++P ++    +   +    + +  +     +    L  ++ S+   L  +  
Sbjct: 15  LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72

Query: 317 SLLLGLSSLGLLYIMNC-AVMEIPQEI-AYLSSLKSLDLRGNNFESLPASIKQ-LSRLCS 373
            +   L  L  + I     ++ I  E    L +L+ L +     + LP   K    +   
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132

Query: 374 LDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPEL---PLCLQELDATNCNRLQ 425
           LD++    + ++       L      L L   N ++ +         L EL+ ++ N L+
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLE 191

Query: 426 SLPE 429
            LP 
Sbjct: 192 ELPN 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 48/277 (17%), Positives = 94/277 (33%), Gaps = 45/277 (16%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNG-LEYLPEKLRYLHWD 68
           L     K   +  GAF+   +L  ++       E+      +       LP KL  +  +
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV------IEADVFSNLP-KLHEIRIE 87

Query: 69  TYP-LRILPSN-FKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKS 125
               L  +    F+   NL  L +  + ++   +  K               L  +   +
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-------KVLLDIQDNIN 140

Query: 126 LRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVL 185
           + +   N                   F  +S +   L+L+++ I+E+ +S    T L+ L
Sbjct: 141 IHTIERNS------------------FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 186 DLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAITEL 243
           +L D   L+ +    F      V L ++    +   P   LE ++ L+  +     + +L
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST--YNLKKL 239

Query: 244 PSSFENLPGLEELFVS---DCSKLDKLPDNIGNLESL 277
           P + E L  L E  ++    C         I  L  +
Sbjct: 240 P-TLEKLVALMEASLTYPSHCCAFANWRRQISELHPI 275

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 27/249 (10%)

Query: 160 TRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNG---- 213
             L L  + I  +       L  LE LDL     L  +S+  F  L SL  L + G    
Sbjct: 79  QALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYK 137

Query: 214 CLNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNI- 271
            L        L K++ L+    +    T++    F  L  LEEL +     L        
Sbjct: 138 TLGETSLFSHLTKLQILR--VGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSL 194

Query: 272 GNLESLRHISAAGSAISQLPSSVADSNALLI--------LDFSRCKGLVSLPRSLLLGLS 323
            +++++ H+         L     D  + +         LD      L +   + L+   
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 324 SLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRR---- 378
           +   + I + ++ ++ + +  +S L  L+   N  +S+P  I  +L+ L  + L      
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

Query: 379 --CNMLQSL 385
             C  +  L
Sbjct: 315 CSCPRIDYL 323

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 48/290 (16%), Positives = 86/290 (29%), Gaps = 51/290 (17%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           LDLS  +   +         NL+ L         I        + L      L +L    
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNG---INTIEEDSFSSL----GSLEHLDLSY 109

Query: 70  YPLRILPSN-FKP-KNLVELNLRFSKVEQPWEGEKACVPSSI--QNFKYLSALSFEGCKS 125
             L  L S+ FKP  +L  LNL  +  +         +  +    +   L  L      +
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYK--------TLGETSLFSHLTKLQILRVGNMDT 161

Query: 126 LRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPS-SIECLTDLEV 184
                            F+    L            L +D S ++     S++ + ++  
Sbjct: 162 FTKIQRKD---------FAGLTFL----------EELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 185 LDLRDCKRLKRISTR-FCKLRSLVDLFVNG----CLNLERFPEI----LEKMEHLKRINL 235
           L L    +   +         S+  L +        +           L K    + + +
Sbjct: 203 LILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 236 DGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAG 284
              ++ ++      + GL EL  S   +L  +PD I   L SL+ I    
Sbjct: 262 TDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 5e-14
 Identities = 47/270 (17%), Positives = 104/270 (38%), Gaps = 47/270 (17%)

Query: 162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFP 221
                + I+++    +   +    +L+  K +    T   +L S+  +  N   +++   
Sbjct: 4   TITVSTPIKQI-FPDDAFAETIKDNLKK-KSVTDAVT-QNELNSIDQIIANNS-DIKSV- 58

Query: 222 EILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHIS 281
           + ++ + ++ ++ L+G  +T++     NL  L  LF+ +  K+  L  ++ +L+ L+ +S
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDEN-KIKDL-SSLKDLKKLKSLS 115

Query: 282 AAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE 341
              + IS +                            L+ L  L  LY+ N  + +I   
Sbjct: 116 LEHNGISDING--------------------------LVHLPQLESLYLGNNKITDIT-V 148

Query: 342 IAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC--LKYLHLTG 399
           ++ L+ L +L L  N    +   +  L++L +L L + N +  L AL     L  L L  
Sbjct: 149 LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSK-NHISDLRALAGLKNLDVLELFS 206

Query: 400 CN-------MLRSLPELPLCLQELDATNCN 422
                       +L      ++  D +   
Sbjct: 207 QECLNKPINHQSNLVVPN-TVKNTDGSLVT 235

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 61/384 (15%), Positives = 124/384 (32%), Gaps = 23/384 (5%)

Query: 9   FLDLS--KIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLH 66
            LDLS      +      F NMS L+ L         +E+  +     L      L    
Sbjct: 94  HLDLSFNAFDALP-ICKEFGNMSQLKFLGLSTTH---LEKSSVLPIAHLNISKVLLVLG- 148

Query: 67  WDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL 126
            +TY  +  P   +  N   L++ F   ++        +  S++    L   + +     
Sbjct: 149 -ETYGEKEDPEGLQDFNTESLHIVFPTNKEF----HFILDVSVKTVANLELSNIKCVLED 203

Query: 127 RSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD 186
                 L  +  +  N      L      + + T     +       +++     +  + 
Sbjct: 204 NKCSYFLSILAKLQTNP----KLSNLTLNNIETTWNSFIRILQLVWHTTVWYF-SISNVK 258

Query: 187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS- 245
           L+     +        L++L    V   +       I E   ++   N   +    +   
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 246 SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP--SSVADS-NALLI 302
               +     L  S+    D + +N G+L  L  +    + + +L   + +     +L  
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 303 LDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLP 362
           LD S+        +       SL  L + +  + +          +K LDL  N  +S+P
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKSIP 437

Query: 363 ASIKQLSRLCSLDLRRCNMLQSLP 386
             + +L  L  L++   N L+S+P
Sbjct: 438 KQVVKLEALQELNVAS-NQLKSVP 460

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 339 PQEIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPALPL-CLKYLH 396
             +I  LS L+ L +  N  + L  S+ K    L  LDL   N L  +   P   LK+L 
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-NKLVKISCHPTVNLKHLD 96

Query: 397 LTGCNMLRSLPELPL-----CLQELDATNCNRLQSLP 428
           L+  N   +LP          L+ L  +    L+   
Sbjct: 97  LSF-NAFDALPICKEFGNMSQLKFLGLST-THLEKSS 131

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 49/330 (14%), Positives = 103/330 (31%), Gaps = 62/330 (18%)

Query: 158 KITRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLN 216
           K+  L +  + I+ +  S+ +   +LE LDL   K L +IS       +L  L ++    
Sbjct: 46  KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKIS--CHPTVNLKHLDLSF-NA 101

Query: 217 LERFPE--ILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVS-DCSKLDKLPDNIGN 273
            +  P       M  LK + L  T + +       +  L    V     +     ++   
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYGEKEDPEG 159

Query: 274 LESLRHISAAGSAISQLPSS------------VADSNALLILDFSRCKGLVSLPRSL--- 318
           L+     S      +                 +  SN   +L+ ++C   +S+   L   
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 319 -----------------------LLGLSSLGLLYIMNCAVMEIPQEIAY------LSSLK 349
                                  L+  +++    I N  +        +      L +L 
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 350 SLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPAL----PLCLKYLHLTGCNMLR 404
              +  + F    + I +  S +   +    +  + +  L         +L  +   +  
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFT-VSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 405 SLPELPLCLQELDATNC--NRLQSLPEIPS 432
           ++ E    L EL+      N+L+ L +I  
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAE 368

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 49/241 (20%), Positives = 89/241 (36%), Gaps = 22/241 (9%)

Query: 172 VPSSIECLTDLEVLDLRDCK--RLKRISTRFCKLRSLVDLFVNGCLNLE-RFPEILEKME 228
           +  +      +  LDL      +   I +    L  L  L++ G  NL    P  + K+ 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 229 HLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAI 287
            L  + +  T ++  +P     +  L  L  S  +    LP +I +L +L  I+  G+ I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 288 S-QLPSSVADSNALL-ILDFSRCK--GLVSLPRSLLLGLSSLGLLYIMNCAVM-EIPQEI 342
           S  +P S    + L   +  SR +  G   +P +      +L  + +    +  +     
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTG--KIPPTF--ANLNLAFVDLSRNMLEGDASVLF 217

Query: 343 AYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNML-----QSLPALPLCLKYLH 396
               + + + L  N+    L   +     L  LDLR  N +     Q L  L   L  L+
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN-NRIYGTLPQGLTQLKF-LHSLN 274

Query: 397 L 397
           +
Sbjct: 275 V 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.7 bits (143), Expect = 7e-10
 Identities = 53/271 (19%), Positives = 97/271 (35%), Gaps = 42/271 (15%)

Query: 156 SGKITRLYLDQSAIE---EVPSSIECLTDLEVLDLRDCKRLK-RISTRFCKLRSLVDLFV 211
           + ++  L L    +     +PSS+  L  L  L +     L   I     KL  L  L++
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 212 NGCLNLE-RFPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPD 269
               N+    P+ L +++ L  ++    A++  LP S  +LP L  +          +PD
Sbjct: 109 THT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 270 NIGNLESL-RHISAAGSAIS-QLPSSVADSNALLILDFSRCK--GLVSLPRSLLLGLSSL 325
           + G+   L   ++ + + ++ ++P + A+ N L  +D SR    G             + 
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG--DASVLFG-SDKNT 223

Query: 326 GLLY------------IMNCAVME------------IPQEIAYLSSLKSLDLRGNNFE-S 360
             ++            +     +             +PQ +  L  L SL++  NN    
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 361 LPASIKQLSRLCSLDLRRCNMLQSLPALPLC 391
           +P     L R           L   P LP C
Sbjct: 284 IPQG-GNLQRFDVSAYANNKCLCGSP-LPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 34/173 (19%)

Query: 236 DGTAITELPSSFENLPGL----EELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS--- 288
           D  A+ ++     N   L          + + L  L D       + ++  +G  +    
Sbjct: 7   DKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY 66

Query: 289 QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSL 348
            +PSS+A+   L  L       LV                         IP  IA L+ L
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVG-----------------------PIPPAIAKLTQL 103

Query: 349 KSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPA-LPLC--LKYLHL 397
             L +   N   ++P  + Q+  L +LD     +  +LP  +     L  +  
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 26/229 (11%)

Query: 215 LNLERFPEILEKMEHLKRINLDGTAITELP-SSFENLPGLEELFVSDCSKLDKLPDNI-G 272
           L LE+ P+ L        ++L    ITE+    F+NL  L  L + +  K+ K+      
Sbjct: 41  LGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFA 97

Query: 273 NLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYI-M 331
            L  L  +  + + + +LP  +  +  L  L     + +  + +S+  GL+ + ++ +  
Sbjct: 98  PLVKLERLYLSKNQLKELPEKMPKT--LQELRVHENE-ITKVRKSVFNGLNQMIVVELGT 154

Query: 332 NC-AVMEIPQEI-AYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALP 389
           N      I       +  L  + +   N  ++P  +     L  L L   N +  + A  
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG-NKITKVDAAS 211

Query: 390 L----CLKYLHLTGCNMLRSLPE-----LPLCLQELDATNCNRLQSLPE 429
           L     L  L L+  N + ++        P  L+EL   N N+L  +P 
Sbjct: 212 LKGLNNLAKLGLSF-NSISAVDNGSLANTPH-LRELHLNN-NKLVKVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 41/254 (16%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 160 TRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNL 217
             L L  + I ++       L  LE L L    +LK +  +    L+ L  +  N    +
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQEL-RVHEN---EI 133

Query: 218 ERFPE-ILEKMEHLKRINLDGTAITEL---PSSFENLPGLEELFVSDCSKLDKLPDNIGN 273
            +  + +   +  +  + L    +        +F+ +  L  + ++D   +  +P   G 
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ--GL 190

Query: 274 LESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMN 332
             SL  +   G+ I+++ ++     N L  L  S    + ++    L     L  L++ N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNN 249

Query: 333 CAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS-------IKQLSRLCSLDLRRCNMLQSL 385
             ++++P  +A    ++ + L  NN  ++ ++         + +    + L   N +Q  
Sbjct: 250 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS-NPVQYW 308

Query: 386 ---PALPLCLKYLH 396
              P+   C+    
Sbjct: 309 EIQPSTFRCVYVRA 322

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 17/210 (8%)

Query: 160 TRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCK-RLKRISTR-FCKLRSLVDLFVNGCLN 216
             L + ++ I +V  S+   L  + V++L     +   I    F  ++ L  + +    N
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-N 182

Query: 217 LERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNI-GNL 274
           +   P+ L     L  ++LDG  IT++ + S + L  L +L +S    +  + +    N 
Sbjct: 183 ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANT 239

Query: 275 ESLRHISAAGSAISQLPSSVADSNALLILD-----FSRCKGLVSLPRSLLLGLSSLGLLY 329
             LR +    + + ++P  +AD   + ++       S        P       +S   + 
Sbjct: 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 330 IMN--CAVMEIPQEI-AYLSSLKSLDLRGN 356
           + +      EI       +    ++ L   
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 44/262 (16%), Positives = 89/262 (33%), Gaps = 51/262 (19%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           L L   K   + PGAF  +  L  L        +++  P ++P  L+ L      +H + 
Sbjct: 81  LILINNKISKISPGAFAPLVKLERLYLS---KNQLKELPEKMPKTLQEL-----RVHEN- 131

Query: 70  YPLRILPSN-FKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR 127
             +  +  + F     ++ + L  + ++       A      Q  K LS +       + 
Sbjct: 132 -EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----FQGMKKLSYIRIADTN-IT 184

Query: 128 SFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPS-SIECLTDLEVLD 186
           + P  L                   P     +T L+LD + I +V + S++ L +L  L 
Sbjct: 185 TIPQGL------------------PP----SLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 187 LRDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS 245
           L     +  +          L +L +N    L + P  L   ++++ + L    I+ + S
Sbjct: 223 LSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 246 S-------FENLPGLEELFVSD 260
           +                + +  
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFS 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 39/210 (18%), Positives = 95/210 (45%), Gaps = 13/210 (6%)

Query: 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL 217
            IT L    + +  +   ++ L +L  L+L+D + +  ++     L  + +L ++G   L
Sbjct: 42  GITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PL 97

Query: 218 ERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESL 277
           +     +  ++ +K ++L  T IT++ +    L  L+ L++    ++  +   +  L +L
Sbjct: 98  KNVSA-IAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLN-QITNIS-PLAGLTNL 153

Query: 278 RHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME 337
           +++S   + +S L + +A+ + L  L     K +  +  S L  L +L  +++ N  + +
Sbjct: 154 QYLSIGNAQVSDL-TPLANLSKLTTLKADDNK-ISDI--SPLASLPNLIEVHLKNNQISD 209

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPASIKQ 367
           +   +A  S+L  + L      + P     
Sbjct: 210 VS-PLANTSNLFIVTLTNQTITNQPVFYNN 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 37/211 (17%), Positives = 83/211 (39%), Gaps = 16/211 (7%)

Query: 224 LEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAA 283
              + +  +I    + +T+   +  +L G+  L       +  +   +  L +L  +   
Sbjct: 15  DPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELK 71

Query: 284 GSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIA 343
            + I+ L + + +   +  L+ S    L ++  S + GL S+  L + +  + ++   +A
Sbjct: 72  DNQITDL-APLKNLTKITELELSGNP-LKNV--SAIAGLQSIKTLDLTSTQITDVT-PLA 126

Query: 344 YLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC--LKYLHLTGCN 401
            LS+L+ L L  N   ++   +  L+ L  L +     +  L  L     L  L     N
Sbjct: 127 GLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTPLANLSKLTTLKADD-N 183

Query: 402 MLRSLPELPLC--LQELDATNCNRLQSLPEI 430
            +  +  L     L E+   N N++  +  +
Sbjct: 184 KISDISPLASLPNLIEVHLKN-NQISDVSPL 213

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 8/199 (4%)

Query: 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER 219
             +  D+  +  +P  +    D  +L L +                L  L ++       
Sbjct: 13  LEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELT 68

Query: 220 FPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNI-GNLESLR 278
             ++   +  L  ++L    +  LP   + LP L  L VS   +L  LP      L  L+
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQ 127

Query: 279 HISAAGSAISQLPSSVADS-NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME 337
            +   G+ +  LP  +      L  L  +    L  LP  LL GL +L  L +   ++  
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 338 IPQEIAYLSSLKSLDLRGN 356
           IP+       L    L GN
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 16/186 (8%)

Query: 230 LKRINLDGTAITELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS 288
              ++L    +     +       L +L +    +L KL  + G L  L  +  + + + 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQLQ 90

Query: 289 QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSS 347
            LP       AL +LD S  + L SLP   L GL  L  LY+    +  +P  +      
Sbjct: 91  SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 348 LKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPAL---PLCLKYLHLTG---- 399
           L+ L L  NN   LPA +   L  L +L L+  N L ++P        L +  L G    
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPWL 208

Query: 400 --CNML 403
             C +L
Sbjct: 209 CNCEIL 214

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 16/129 (12%)

Query: 311 LVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSR 370
           L +   + L+  + L  L +    + ++      L  L +LDL  N  +SLP   + L  
Sbjct: 43  LYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPA 101

Query: 371 LCSLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPE-----LPLCLQELDATN 420
           L  LD+   N L SLP      L   L+ L+L G N L++LP       P  L++L    
Sbjct: 102 LTVLDVSF-NRLTSLPLGALRGLGE-LQELYLKG-NELKTLPPGLLTPTPK-LEKLS-LA 156

Query: 421 CNRLQSLPE 429
            N L  LP 
Sbjct: 157 NNNLTELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPA---LPLCLK 393
           +P ++        L L  N   +   +     +RL  L+L R   L  L     LP+ L 
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVDGTLPV-LG 80

Query: 394 YLHLTGCNMLRSLPELPL---CLQELDATNCNRLQSLPE 429
            L L+  N L+SLP L      L  LD +  NRL SLP 
Sbjct: 81  TLDLSH-NQLQSLPLLGQTLPALTVLDVSF-NRLTSLPL 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 2e-12
 Identities = 75/464 (16%), Positives = 147/464 (31%), Gaps = 151/464 (32%)

Query: 29  SNLRLLKFYVPKF------YEIERFPMQLPNGLEY-----LP---EKLRYLHWDTYPLRI 74
               +L  +   F       +++  P  + +  E                L W       
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW------T 70

Query: 75  LPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYL-SALSFEGCKSLRSFPSNL 133
           L S  K + +V+   +F  VE+              N+K+L S +  E  +     PS  
Sbjct: 71  LLS--KQEEMVQ---KF--VEEVLR----------INYKFLMSPIKTE-QRQ----PS-- 106

Query: 134 HFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRL 193
                +T  +                 RLY                 D +V    +  RL
Sbjct: 107 ----MMTRMYIEQRD------------RLY----------------NDNQVFAKYNVSRL 134

Query: 194 K---RISTRFCKLRSLVDLFVNG-------CLNLE--RFPEILEKME------HLKRINL 235
           +   ++     +LR   ++ ++G        + L+     ++  KM+      +LK  N 
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 236 DGTAITELPSSFENLPGLEELFVSDCSKLDK----LPDNIGNLESLRHISAAGSAISQLP 291
             T +  L    + L            ++D       D+  N++    I +  + + +L 
Sbjct: 195 PETVLEML----QKL----------LYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRLL 238

Query: 292 SSVADSNALLILD----------FS-RCKGLV-SLPRSLLLGLSSLGLLYI---MNCAVM 336
            S    N LL+L           F+  CK L+ +  + +   LS+    +I    +   +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 337 EIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML-QSLPALPLCLKYL 395
              +  + L   K LD R    + LP  +   +        R +++ +S+          
Sbjct: 299 TPDEVKSLLL--KYLDCR---PQDLPREVLTTNPR------RLSIIAESIRDGLATWDNW 347

Query: 396 HLTGCNMLRSLPELPLCLQELDATNCNRL-QSL---PE---IPS 432
               C+ L ++ E    L  L+     ++   L   P    IP+
Sbjct: 348 KHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 23/214 (10%)

Query: 229 HLKRINLDGTAITELP-SSFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSA 286
               ++L    I+EL    F+ L  L  L + +  K+ K+ +     L  L+ +  + + 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH 113

Query: 287 ISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMN--CAVMEIPQEIAY 344
           + ++P ++  S  L+ L     + +  +P+ +  GL ++  + +                
Sbjct: 114 LVEIPPNLPSS--LVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 345 LSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPL----CLKYLHLTGC 400
              L  L +       +P  +     L  L L   N +Q++    L     L  L L   
Sbjct: 171 GLKLNYLRISEAKLTGIPKDL--PETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGH- 226

Query: 401 NMLRSLPE-----LPLCLQELDATNCNRLQSLPE 429
           N +R +       LP  L+EL   N N+L  +P 
Sbjct: 227 NQIRMIENGSLSFLP-TLRELHLDN-NKLSRVPA 258

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 56/299 (18%), Positives = 103/299 (34%), Gaps = 43/299 (14%)

Query: 117 ALSFEGCKSLRSFPSNLHFVCPV----TINFSYCVT--LIEFPQ-ISGKITRLYLDQSAI 169
           A +  G   L S P     +CP      +    C    L   P+ IS   T L L  + I
Sbjct: 7   AETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDI 66

Query: 170 EEVP-SSIECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPEILEKM 227
            E+     + L  L  L L + K + +I  + F  LR L  L+++   +L   P  L   
Sbjct: 67  SELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPS- 123

Query: 228 EHLKRINLDGTAITELP-SSFENLPGLEELFVSD-CSKLDKLPDNIGNLESLRHISAAGS 285
             L  + +    I ++P   F  L  +  + +     +         +   L ++  + +
Sbjct: 124 -SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 286 AISQLPSSVADSNALLILD-----------FSRCKGLVSL----------PRSLLLGLSS 324
            ++ +P  + ++   L LD             R   L  L              L  L +
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 325 LGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASI-------KQLSRLCSLDL 376
           L  L++ N  +  +P  +  L  L+ + L  NN   +  +         + +    + L
Sbjct: 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 18/180 (10%)

Query: 260 DCS--KLDKLPDNIGNLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPR 316
            CS   L  +P  I        +    + IS+L          L  L     K +  +  
Sbjct: 39  QCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHE 95

Query: 317 SLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLD 375
                L  L  LYI    ++EIP  +   SSL  L +  N    +P  +   L  +  ++
Sbjct: 96  KAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153

Query: 376 LRRCNMLQSLPALP-----LCLKYLHLTGCNMLRSLP-ELPLCLQELDATNCNRLQSLPE 429
           +   N L++    P     L L YL ++    L  +P +LP  L EL   + N++Q++  
Sbjct: 154 MGG-NPLENSGFEPGAFDGLKLNYLRISE-AKLTGIPKDLPETLNELHLDH-NKIQAIEL 210

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 54/353 (15%), Positives = 104/353 (29%), Gaps = 87/353 (24%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           LDL       L    F  + +L  L     K  +I             L  KL+ L+   
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH------EKAFSPLR-KLQKLYISK 111

Query: 70  YPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSF 129
             L  +P N  P +LVEL +  ++                   + +    F G +++   
Sbjct: 112 NHLVEIPPNL-PSSLVELRIHDNR------------------IRKVPKGVFSGLRNMN-- 150

Query: 130 PSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTD--LEVLDL 187
                                           + +  + +E             L  L +
Sbjct: 151 -------------------------------CIEMGGNPLENSGFEPGAFDGLKLNYLRI 179

Query: 188 RDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAITELPS 245
            +  +L  I       L  L  L  N    ++      L +   L R+ L    I  + +
Sbjct: 180 SEA-KLTGIPKDLPETLNEL-HLDHN---KIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 246 -SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILD 304
            S   LP L EL + +  KL ++P  + +L+ L+ +    + I+++  +           
Sbjct: 235 GSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVND---------- 283

Query: 305 FSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGN 356
           F      V       + L +  + Y       E+       ++   ++     
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYW------EVQPATFRCVTDRLAIQFGNY 330

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 230 LKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSAI 287
            K ++L    +  L S SF + P L+ L +S C ++  + D    +L  L  +   G+ I
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 288 SQLPSSVADS-NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIA--Y 344
             L        ++L  L       L SL    +  L +L  L + +  +           
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 345 LSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLR---RCNMLQSLPA---LPLCLKYLHL 397
           L++L+ LDL  N  +S+  +  + L ++  L+L      N +  +       + LK L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 398 TGCNMLRSLPE 408
              N L+S+P+
Sbjct: 208 DT-NQLKSVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 23/232 (9%)

Query: 171 EVPSSIECLTDLEVLDLRDCKRLKRI-STRFCKLRSLVDLFVNGCLNLERFPE-ILEKME 228
           ++P ++      + LDL     L+ + S  F     L  L ++ C  ++   +   + + 
Sbjct: 21  KIPDNL--PFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS 76

Query: 229 HLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSA 286
           HL  + L G  I  L   +F  L  L++L   +   L  L +   G+L++L+ ++ A + 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL 135

Query: 287 ISQLPSSVADSN--ALLILDFSRCKGLVSLPRSLLLGLSSLGL----LYIMNCAVMEIPQ 340
           I         SN   L  LD S  K + S+  + L  L  + L    L +    +  I  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 341 EIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRR------CNMLQSL 385
                  LK L L  N  +S+P  I  +L+ L  + L        C  +  L
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 8e-12
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 11/158 (6%)

Query: 229 HLKRINLDGTAITELPS--SFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGS 285
           +   ++L    ++ L +  +   L  L  L +S    L+ +       + +LR++  + +
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98

Query: 286 AISQLPSSVADSN-ALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-- 342
            +  L   +     AL +L       +V + R+    ++ L  LY+    +   P E+  
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 343 --AYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLR 377
               L  L  LDL  N  + LP   +++L       L 
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 13/159 (8%)

Query: 149 LIEFPQ-ISGKITRLYLDQSAIEEVPSSI--ECLTDLEVLDLRDCKRLKRISTR-FCKLR 204
           L   PQ +      L L  + +  + +      LT+L  L L     L  IS+  F  + 
Sbjct: 30  LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVP 88

Query: 205 SLVDLFVNGCLNLERFP-EILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCS 262
           +L  L ++   +L      +   ++ L+ + L    I  +   +FE++  L++L++S   
Sbjct: 89  NLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN- 146

Query: 263 KLDKLP----DNIGNLESLRHISAAGSAISQLPSSVADS 297
           ++ + P     +   L  L  +  + + + +LP +    
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 20/130 (15%)

Query: 315 PRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQLSRLC 372
                  L++L  L + +  +  I  E    + +L+ LDL  N+  +L   +   L  L 
Sbjct: 56  AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115

Query: 373 SLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPE--------LPLCLQELDAT 419
            L L   N +  +       +   L+ L+L+  N +   P         LP  L  LD +
Sbjct: 116 VLLLYN-NHIVVVDRNAFEDMAQ-LQKLYLSQ-NQISRFPVELIKDGNKLPK-LMLLDLS 171

Query: 420 NCNRLQSLPE 429
           + N+L+ LP 
Sbjct: 172 S-NKLKKLPL 180

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 19/105 (18%)

Query: 337 EIPQEIAYLSSLKSLDLRGNNFESLPASI--KQLSRLCSLDLRRCNMLQSLPA-----LP 389
            +PQ +   S    LDL  NN   L A     +L+ L SL L   + L  + +     +P
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVP 88

Query: 390 LCLKYLHLTGCNMLRSLPE-----LPLCLQELDATNCNRLQSLPE 429
             L+YL L+  N L +L E     L   L+ L   N N +  +  
Sbjct: 89  -NLRYLDLSS-NHLHTLDEFLFSDLQA-LEVLLLYN-NHIVVVDR 129

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 58/186 (31%), Positives = 85/186 (45%), Gaps = 25/186 (13%)

Query: 260 DCS--KLDKLPDNI-GNLESLRHISAAGSAISQLPSSVADS-NALLILDFSRCKGLVSLP 315
           DCS  KL  +P NI  + + L       + +S LPS        L +L  +  K L +LP
Sbjct: 22  DCSSKKLTAIPSNIPADTKKLD---LQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLP 77

Query: 316 RSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQLSRLCS 373
             +   L +L  L++ +  +  +P  +   L +L  L L  N  +SLP  +   L++L  
Sbjct: 78  AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137

Query: 374 LDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPE-----LPLCLQELDATNCNR 423
           L L   N LQSLP      L   LK L L   N L+ +PE     L   L+ L   N N+
Sbjct: 138 LSLGY-NELQSLPKGVFDKLTS-LKELRL-YNNQLKRVPEGAFDKLTE-LKTLKLDN-NQ 192

Query: 424 LQSLPE 429
           L+ +PE
Sbjct: 193 LKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 7/153 (4%)

Query: 229 HLKRINLDGTAITELPSS-FENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSA 286
            L+ + L+   +  LP+  F+ L  LE L+V+D  KL  LP  +   L +L  +    + 
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQ 120

Query: 287 ISQLPSSVADS-NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AY 344
           +  LP  V DS   L  L     + L SLP+ +   L+SL  L + N  +  +P+     
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179

Query: 345 LSSLKSLDLRGNNFESLPASI-KQLSRLCSLDL 376
           L+ LK+L L  N  + +P      L +L  L L
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 18/197 (9%)

Query: 160 TRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNL 217
            +L L  + +  +PS     LT L +L L D  +L+ +    F +L++L  L+V     L
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KL 97

Query: 218 ERFPE-ILEKMEHLKRINLDGTAITELPSS-FENLPGLEELFVSDCSKLDKLPDNI-GNL 274
           +  P  + +++ +L  + LD   +  LP   F++L  L  L +    +L  LP  +   L
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKL 156

Query: 275 ESLRHISAAGSAISQLPSSVADS-NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMN- 332
            SL+ +    + + ++P    D    L  L     + L  +P      L  L +L +   
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN 215

Query: 333 ---CAVMEIPQEIAYLS 346
              C        I Y++
Sbjct: 216 PWDCT----CNGIIYMA 228

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 5e-11
 Identities = 45/223 (20%), Positives = 75/223 (33%), Gaps = 14/223 (6%)

Query: 214 CLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGN 273
               E +       E L R  L     T L S  E+   L+EL   +   L  +   +  
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 394

Query: 274 LESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC 333
           L+ L +        S L +   D      LD  R K L+      +       +L++ + 
Sbjct: 395 LDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFLLENSVLKMEYADVR-VLHLAHK 451

Query: 334 AVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC-- 391
            +  +   +  L  +  LDL  N   +LP ++  L  L  L     N L+++  +     
Sbjct: 452 DLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA-SDNALENVDGVANLPR 509

Query: 392 LKYLHLTGCNMLRSLPELPL-----CLQELDATNCNRLQSLPE 429
           L+ L L   N L+    +        L  L+    N L     
Sbjct: 510 LQELLL-CNNRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 46/351 (13%), Positives = 99/351 (28%), Gaps = 44/351 (12%)

Query: 25  FTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNL 84
            +       + F  P         + L      L  + R       P  +   +    +L
Sbjct: 250 VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASL 309

Query: 85  VELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFS 144
            +   + +        +       +++            + L     ++     +     
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE 369

Query: 145 YCVTLIEF-PQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKL 203
            C  L E  P+    +  + L   A++ +    E L     L   D  R   +     K 
Sbjct: 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK- 428

Query: 204 RSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSK 263
                        L     +  +   ++ ++L    +T L    E L  +  L +S   +
Sbjct: 429 ------------FLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-R 474

Query: 264 LDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLS 323
           L  LP  +  L  L  + A+ +A+  +                            +  L 
Sbjct: 475 LRALPPALAALRCLEVLQASDNALENVDG--------------------------VANLP 508

Query: 324 SLGLLYIMNCAVMEIP--QEIAYLSSLKSLDLRGNNFESLPASIKQLSRLC 372
            L  L + N  + +    Q +     L  L+L+GN+        ++L+ + 
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 23/242 (9%)

Query: 22  PGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKP 81
                    L   +  V K   ++          E  PE    L      +R L      
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 401

Query: 82  KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTI 141
           K  ++       V+         + S       +  + +   + L               
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL-HLAHK--------- 451

Query: 142 NFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFC 201
                +T++   +    +T L L  + +  +P ++  L  LEVL   D   L+ +     
Sbjct: 452 ----DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VA 505

Query: 202 KLRSLVDLFVNGCLNLERFPEI--LEKMEHLKRINLDGTAITELPSS----FENLPGLEE 255
            L  L +L +     L++   I  L     L  +NL G ++ +         E LP +  
Sbjct: 506 NLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

Query: 256 LF 257
           + 
Sbjct: 565 IL 566

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 31/251 (12%)

Query: 206 LVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITEL----PSSFENLPGLEELFVSDC 261
            +   V+   +L +F +I+ K   LKR+ +    I             + GL+EL + + 
Sbjct: 47  YLLKRVDTEADLGQFTDII-KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105

Query: 262 SKLDKLPDNIGNLE-------SLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSL 314
                 P  +           +LR++S A                L +L  ++    ++ 
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNF 164

Query: 315 PRSLLLGLSSLGLLYIMNCAVMEIPQEIAY-----LSSLKSLDLRGNNFESLP----ASI 365
               +    +L  L + +   +     I+        +L+ L LR    E+      A  
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 366 KQLSRLCSLDLRRCNMLQSLPALPLC-----LKYLHLTGCNMLRSLPE-LPLCLQELDAT 419
               +L  LDL   N L+     P C     L  L+L+    L+ +P+ LP  L  LD +
Sbjct: 225 AARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLPAKLSVLDLS 282

Query: 420 NCNRLQSLPEI 430
             NRL   P  
Sbjct: 283 Y-NRLDRNPSP 292

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 39/232 (16%), Positives = 70/232 (30%), Gaps = 31/232 (13%)

Query: 179 LTDLEVLDLRDCK--RLKRISTRFCKLRSLVDLFVNGCLNLERFPEILE----KMEHLKR 232
           ++ L+ L L + +                L  L +       R   + E        LK 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 233 INLDGTAITELP-SSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP 291
           +++                P L  L +SD            N             IS L 
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSD------------NP-----ELGERGLISALC 196

Query: 292 SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI--AYLSSLK 349
                +  +L L  +  +    +  +L      L  L + + ++ +        + S L 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 350 SLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC--LKYLHLTG 399
           SL+L     + +P  +   ++L  LDL   N L   P+      +  L L G
Sbjct: 257 SLNLSFTGLKQVPKGL--PAKLSVLDL-SYNRLDRNPSPDELPQVGNLSLKG 305

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 46/244 (18%), Positives = 99/244 (40%), Gaps = 39/244 (15%)

Query: 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER 219
           +      + I+++  S +   +    +L+  K +    T   +L S+  +  N   +++ 
Sbjct: 5   SETITVPTPIKQI-FSDDAFAETIKDNLKK-KSVTDAVT-QNELNSIDQIIANNS-DIKS 60

Query: 220 FPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH 279
               ++ + ++ ++ L+G  +T++     NL  L  LF+ +  K+  L  ++ +L+ L+ 
Sbjct: 61  VQG-IQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDEN-KVKDL-SSLKDLKKLKS 116

Query: 280 ISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP 339
           +S   + IS +                            L+ L  L  LY+ N  + +I 
Sbjct: 117 LSLEHNGISDING--------------------------LVHLPQLESLYLGNNKITDI- 149

Query: 340 QEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC--LKYLHL 397
             ++ L+ L +L L  N    +   +  L++L +L L + N +  L AL     L  L L
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSK-NHISDLRALAGLKNLDVLEL 207

Query: 398 TGCN 401
               
Sbjct: 208 FSQE 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 8/176 (4%)

Query: 107 SSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYC-VTLIEFPQISGKITRLYLD 165
             IQ    ++ L   G K L       +      +      V  +   +   K+  L L+
Sbjct: 62  QGIQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120

Query: 166 QSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILE 225
            + I ++ + +  L  LE L L + K +  I+    +L  L  L +     +      L 
Sbjct: 121 HNGISDI-NGLVHLPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDN-QISDIVP-LA 175

Query: 226 KMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHIS 281
            +  L+ + L    I++L  +   L  L+ L +     L+K  ++  NL     + 
Sbjct: 176 GLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 30/205 (14%), Positives = 60/205 (29%), Gaps = 33/205 (16%)

Query: 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL 217
                 L QS+   +  +   +  L  + L +   +  ++       ++ DL +N     
Sbjct: 24  AYLNGLLGQSSTANI--TEAQMNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINN--IH 77

Query: 218 ERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLES 276
                 +  + +L+R+ + G  +T +   +   L  L  L +S  +  D +   I  L  
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 277 LRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVM 336
           +                         +D S    +  +    L  L  L  L I    V 
Sbjct: 138 VNS-----------------------IDLSYNGAITDI--MPLKTLPELKSLNIQFDGVH 172

Query: 337 EIPQEIAYLSSLKSLDLRGNNFESL 361
           +  + I     L  L          
Sbjct: 173 DY-RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 31/177 (17%), Positives = 67/177 (37%), Gaps = 10/177 (5%)

Query: 228 EHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAI 287
           +      L  ++   +  +   +  L  + +++   +  L   I    +++ ++      
Sbjct: 23  KAYLNGLLGQSSTANI--TEAQMNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHA 78

Query: 288 SQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAV-MEIPQEIAYLS 346
           +   + ++  + L  L       + S     L GL+SL LL I + A    I  +I  L 
Sbjct: 79  TNY-NPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 347 SLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM--LQSLPALPLCLKYLHLTGCN 401
            + S+DL  N   +    +K L  L SL+++   +   + +   P  L  L+     
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP-KLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 321 GLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS-IKQLSRLCSLDLRRC 379
              ++  L I N         I+ LS+L+ L + G +  S     +  L+ L  LD+   
Sbjct: 64  YAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH- 121

Query: 380 NMLQSLPALPLC----LKYLHLTGCNMLRSLPELPLC--LQELDATNCNRLQSLPEI 430
           +         +     +  + L+    +  +  L     L+ L+    + +     I
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF-DGVHDYRGI 177

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 53/316 (16%), Positives = 102/316 (32%), Gaps = 54/316 (17%)

Query: 123 CKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDL 182
           CK      S+      + +        +    +S  +      +S +++  +       +
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95

Query: 183 EVLDLRDCKRLKR-ISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG-TAI 240
           + +DL +       +     +   L +L + G    +     L K  +L R+NL G +  
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 241 TE--LPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSN 298
           +E  L +   +   L+EL +S C    +        + ++   A  S             
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTE--------KHVQVAVAHVS------------E 195

Query: 299 ALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNF 358
            +  L+ S  +            L    L  +           +    +L  LDL  +  
Sbjct: 196 TITQLNLSGYRK----------NLQKSDLSTL-----------VRRCPNLVHLDLSDSVM 234

Query: 359 ---ESLPASIKQLSRLCSLDLRRCNML--QSLPALPLC--LKYLHLTGCNMLRSLPELPL 411
              +       QL+ L  L L RC  +  ++L  L     LK L + G     +L  L  
Sbjct: 235 LKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE 293

Query: 412 CLQELDATNCNRLQSL 427
            L  L   NC+   ++
Sbjct: 294 ALPHLQI-NCSHFTTI 308

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 7e-10
 Identities = 52/322 (16%), Positives = 98/322 (30%), Gaps = 68/322 (21%)

Query: 149 LIEFPQISGKITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLV 207
           L + P++   +  + L  ++I E+   S   L DL+ L +        I           
Sbjct: 22  LHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR---------- 71

Query: 208 DLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS-FENLPGLEELFVSDCS-KLD 265
                              +  L  + LD     +L +  F  L  LE L ++ C+    
Sbjct: 72  -------------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118

Query: 266 KLPDNI-GNLESLRHISAAGSAISQLPSSVADSN--ALLILDFSRCKGLVSLPRSLLLGL 322
            L  N    L SL  +    + I ++  +    N     +LD +  K + S+    LL  
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNF 177

Query: 323 SSLGLLYI-----------MNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIK----Q 367
                  +                 E        +S+ +LDL GN F+   A        
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 368 LSRLCSLDLRR---------CNMLQSLPALPL------CLKYLHLTGCNMLRSLPE---- 408
            +++ SL L               +              +K   L+  + + +L +    
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFS 296

Query: 409 -LPLCLQELDATNCNRLQSLPE 429
                L++L     N +  + +
Sbjct: 297 HFTD-LEQLTLAQ-NEINKIDD 316

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 70/410 (17%), Positives = 136/410 (33%), Gaps = 67/410 (16%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGL-EYLPEKLRYLHWD 68
           +DLS      L+  +F+ + +L+ LK       E +   + + N     L   L  L  D
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKV------EQQTPGLVIRNNTFRGLS-SLIILKLD 87

Query: 69  TYPLRILPSN-FKP-KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL 126
                 L +  F    NL  L L    ++       A +  +   FK L++L     + L
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDG------AVLSGNF--FKPLTSL-----EML 134

Query: 127 RSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD 186
               +N+  + P +   +             +   L L  + ++ +              
Sbjct: 135 VLRDNNIKKIQPASFFLN-----------MRRFHVLDLTFNKVKSICEED---------- 173

Query: 187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS 246
                  +       +L S+    +N             K   +  ++L G    E  + 
Sbjct: 174 ---LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 247 -FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDF 305
            F +            +K+  L  +                         +++ +   D 
Sbjct: 231 RFFDAIAG--------TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 306 SRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPAS 364
           S+   + +L +S+    + L  L +    + +I       L+ L  L+L  N   S+ + 
Sbjct: 283 SK-SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341

Query: 365 I-KQLSRLCSLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPE 408
           + + L +L  LDL   N +++L       LP  LK L L   N L+S+P+
Sbjct: 342 MFENLDKLEVLDLSY-NHIRALGDQSFLGLPN-LKELALDT-NQLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 68/368 (18%), Positives = 125/368 (33%), Gaps = 39/368 (10%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           L L   + + L+ GAF  ++NL +L                L          L  L    
Sbjct: 84  LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA-----VLSGNFFKPLTSLEMLVLRD 138

Query: 70  YPLR-ILPSNF--KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL 126
             ++ I P++F    +    L+L F+KV+         +              F     L
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVK--------SICEED--LLNFQGKHFT---LL 185

Query: 127 RSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD 186
           R     L  +    + +  C    +   I    T L L  +  +E  +            
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSI----TTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS- 245
                             +  D        LE           +K  +L  + I  L   
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA--------SGVKTCDLSKSKIFALLKS 293

Query: 246 SFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSAISQLPSSVADS-NALLIL 303
            F +   LE+L ++  ++++K+ DN    L  L  ++ + + +  + S + ++ + L +L
Sbjct: 294 VFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352

Query: 304 DFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLP 362
           D S    + +L     LGL +L  L +    +  +P  I   L+SL+ + L  N ++   
Sbjct: 353 DLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411

Query: 363 ASIKQLSR 370
             I  LSR
Sbjct: 412 PRIDYLSR 419

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 13/180 (7%)

Query: 224 LEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAA 283
              + +  + NL   ++T+L  S + L G++     +   +  L   +    +L+ +  +
Sbjct: 15  DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNS-NIQSL-AGMQFFTNLKELHLS 71

Query: 284 GSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIA 343
            + IS L S + D   L  L  +R + L +L     +  + L  L++ N  + +    + 
Sbjct: 72  HNQISDL-SPLKDLTKLEELSVNRNR-LKNLN---GIPSACLSRLFLDNNELRDT-DSLI 125

Query: 344 YLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC--LKYLHLTGCN 401
           +L +L+ L +R N  +S+   +  LS+L  LDL   N + +   L     + ++ LTG  
Sbjct: 126 HLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTGGLTRLKKVNWIDLTGQK 183

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 53/390 (13%), Positives = 112/390 (28%), Gaps = 37/390 (9%)

Query: 9   FLDLS--KIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLH 66
            LDLS      +      F N++ L  L     KF +++         + +L      L 
Sbjct: 125 HLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQLD------LLPVAHLHLSCILLD 177

Query: 67  -WDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKS 125
               +       + +  N   L+L F                    F     +S      
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFH---------------PNSLFSVQVNMSVNALGH 222

Query: 126 LRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVL 185
           L+     L+      +             ++  +  +        ++         +E L
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW-PRPVEYL 281

Query: 186 DLRDCKRLKRISTRF-----CKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI 240
           ++ +    +RI           L+SL+   V   + L     +      +    L  +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 241 TELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNA 299
             +      +      L  +     D +      L+ L+ +    + +         +  
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 300 LLILDFSRCKGLVSLPRSLLLGLSSL-GLLYIMNCAVMEIPQEI--AYLSSLKSLDLRGN 356
           +  L+      L SL         +    + ++N +   +   +       +K LDL  N
Sbjct: 402 MSSLETLDVS-LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460

Query: 357 NFESLPASIKQLSRLCSLDLRRCNMLQSLP 386
              S+P  +  L  L  L++   N L+S+P
Sbjct: 461 RIMSIPKDVTHLQALQELNVAS-NQLKSVP 489

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 78/463 (16%), Positives = 155/463 (33%), Gaps = 72/463 (15%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPE-------KL 62
           L LS+     L     + +S LR+L+                 N +  L          L
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSH--------------NRIRSLDFHVFLFNQDL 102

Query: 63  RYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSS--IQNFKYLSALSF 120
            YL      L+ +       +L  L+L F+     ++     +P      N   L+ L  
Sbjct: 103 EYLDVSHNRLQNISCC-PMASLRHLDLSFN----DFD----VLPVCKEFGNLTKLTFLGL 153

Query: 121 EGCKSLRSFP----SNLHFVCPVTINFSYCVTLIEFPQI-SGKITRLYLDQSAIEEVPSS 175
                 R       ++LH  C +    SY +   E   +     T L+L           
Sbjct: 154 SA-AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212

Query: 176 IEC----LTDLEVLDLR----DCKRLKRISTRFCKLRSLVDL-FVNGCLNLERFPEILE- 225
           +      L  L++ +++    +C+RL    +   +  +L+++   +     +   ++ + 
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 226 ----KMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCS--KLDKLPDNIGN-LESLR 278
                +E+L   NL  T   +      +   L+ L +            + + +    + 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 279 HISAAGSAISQLPSSVADS-NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME 337
               + S    +      S ++   L+F++              L  L  L +    +  
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKN 391

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPASI-----KQLSRLCSLDLRRCNMLQSL--PALPL 390
             +      ++ SL+    +  SL +            +  L+L   NML       LP 
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS-NMLTGSVFRCLPP 450

Query: 391 CLKYLHLTGCNMLRSLPE----LPLCLQELDATNCNRLQSLPE 429
            +K L L   N + S+P+    L   LQEL+  + N+L+S+P+
Sbjct: 451 KVKVLDL-HNNRIMSIPKDVTHLQ-ALQELNVAS-NQLKSVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 52/363 (14%), Positives = 109/363 (30%), Gaps = 39/363 (10%)

Query: 8   IFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHW 67
           I LDL        +  +     N  +L                  N L +L  +L  +  
Sbjct: 174 ILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSVNALGHL--QLSNIKL 230

Query: 68  DTYPLRILPSNFKP--KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKS 125
           +    + L +      +    LN+    +E  W+             + +  L+      
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF--QFFWPRPVEYLNIYNLTI 288

Query: 126 LRSFPSNLHFVCPVTINFSYCVTLIEFPQISG-KITRLYLDQSAIEEVPSSIECLTDLEV 184
                            F+Y  T ++   I   K       + A+  V        ++ +
Sbjct: 289 TER---------IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV------FAEMNI 333

Query: 185 LDLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITEL 243
             L        I         S   L     +  +   +    ++ L+ + L    +   
Sbjct: 334 KML-SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 244 PSSFENLPGLEELFVSDCSKLDKLP-----DNIGNLESLRHISAAGSAISQLPSSVADS- 297
                    +  L   D S L+ L            ES+  ++ + +    L  SV    
Sbjct: 393 FKVALMTKNMSSLETLDVS-LNSLNSHAYDRTCAWAESILVLNLSSN---MLTGSVFRCL 448

Query: 298 -NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRG 355
              + +LD    + ++S+P+ +   L +L  L + +  +  +P  +   L+SL+ + L  
Sbjct: 449 PPKVKVLDLHNNR-IMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506

Query: 356 NNF 358
           N +
Sbjct: 507 NPW 509

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 43/335 (12%), Positives = 95/335 (28%), Gaps = 70/335 (20%)

Query: 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKR------------------LKRISTRFC 201
            ++++         + I     +  ++L+                      ++ +S+ + 
Sbjct: 46  RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105

Query: 202 KLRSL-----------VDLFVNGCLNLER-------------FPEILEKMEHLKRINLDG 237
            L  +           ++L      N +                 I     +LK ++L  
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165

Query: 238 TAITE-----LPSSFENLPGLEELFVSDCSK------LDKLPDNIGNLESLR-----HIS 281
           + + +     L    +    L  L +S  +       L++L     NL+SL+      + 
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225

Query: 282 AAGSAISQLPS--SVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP 339
              + + + P    +        +      GL              G    +   +  + 
Sbjct: 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY 285

Query: 340 QEIAYLSSLKSLDLRGNNF--ESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC---LKY 394
                 S L +L+L         L   + Q  +L  L +        L  L      L+ 
Sbjct: 286 S---VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342

Query: 395 LHLTGCNMLRSLPELPLCLQELD--ATNCNRLQSL 427
           L +         P + L  Q L   +  C +L+S+
Sbjct: 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 54/381 (14%), Positives = 108/381 (28%), Gaps = 58/381 (15%)

Query: 82  KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGC-----KSLRSFPSNLHFV 136
             L E+ L+   V         C+    ++FK    L    C       L +  +    +
Sbjct: 105 TWLEEIRLKRMVVT------DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 137 CPVTINFSYCV-----TLIEFPQISGKITRLYLDQSAIEEVPSSIECL----TDLEVLDL 187
             + +  S         L  FP     +  L +   A E   S++E L     +L+ L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 188 RDCKRLKRISTRFCKLRSLVDLFVNGCLN------LERFPEILEKMEHLKRINLDGTAIT 241
                L++++T   +   L +L   G                L   + L+ ++    A+ 
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 242 E-LPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNAL 300
             LP+ +     L  L +S  +              L  +      + +L       +A 
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQS---------YDLVKLLCQCPKLQRLWVLDYIEDAG 329

Query: 301 LILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNF-- 358
           L +  S CK L  L             + +    ++ +         L+S+         
Sbjct: 330 LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMTN 386

Query: 359 ESLPASIKQLSRLCSLDLRRCNM--------------LQSLPALPLCLKYLHLTGCNMLR 404
            +L    +    +    L                     ++      L+ L L+G    +
Sbjct: 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDK 446

Query: 405 SLPELPLC---LQELDATNCN 422
               +      ++ L      
Sbjct: 447 VFEYIGTYAKKMEMLSVAFAG 467

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 64/383 (16%), Positives = 118/383 (30%), Gaps = 82/383 (21%)

Query: 82  KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFV--CP- 138
           +NL EL+LR S V+         +      +  L +L+     S  SF +    V  CP 
Sbjct: 156 RNLKELDLRESDVDDV---SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 139 -VTINFSYCVTLIEFPQISGKITRL----------YLDQSAIEEVPSSIECLTDLEVLD- 186
             ++  +  V L +   +  +  +L           +       +  ++    +L  L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 187 ------------LRDCKRLKRISTRFC------------KLRSLVDLFVNGCLNLERFPE 222
                          C RL  ++  +             +   L  L+V   +       
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332

Query: 223 ILEKMEHLKRINLDG---------TAITE--LPSSFENLPGLEELFVSDCSK-----LDK 266
           +    + L+ + +            A+TE  L S     P LE + +  C +     L  
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALIT 391

Query: 267 LPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLG 326
           +  N  N+   R       A   L     D     I+    CK L  L  SL   L+   
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV--EHCKDLRRL--SLSGLLTDKV 447

Query: 327 LLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNF--ESLPASIKQLSRLCSLDLRRCN---- 380
             YI             Y   ++ L +         +   +     L  L++R C     
Sbjct: 448 FEYI-----------GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496

Query: 381 -MLQSLPALPLCLKYLHLTGCNM 402
            +L +   L   ++ L ++ C++
Sbjct: 497 ALLANASKLE-TMRSLWMSSCSV 518

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 34/283 (12%)

Query: 177 ECLTDLEVLDLRDCKR-------LKRISTRFCKLRSLVDLFVNGCLNL--ERFPEILEKM 227
                ++ L + +          L  ++     L  L + ++     +  +    I    
Sbjct: 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL-NFYMTEFAKISPKDLETIARNC 219

Query: 228 EHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAG--- 284
             L  + +    I EL   F+    LEE      ++   +P+   NL   R +   G   
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 285 SAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIA- 343
              +++P     +  +  LD            +L+    +L +L   N       + +A 
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 344 YLSSLKSLDLRGNNFESLP---------ASIKQLSRLC----SLDLRRCNM----LQSLP 386
           Y   LK L +     E              +  L++ C     + +   ++    L+S+ 
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 387 ALPLCLKYLHLTGCNMLRSLPELPLC--LQELDATNCNRLQSL 427
                L    L   +    + +LPL   ++ L    C +L+  
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKKLRRF 441

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 59/380 (15%), Positives = 119/380 (31%), Gaps = 55/380 (14%)

Query: 82  KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCK-----SLRSFPSNLHFV 136
            +L  LN   ++  +        + +  +N + L ++     +           +NL   
Sbjct: 192 TSLEVLNFYMTEFAKISP---KDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 137 CPVTINFSYCVTLIEFPQISG-KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRL-K 194
           C  ++N    +       +   K+ RL L      E+P        +  LDL       +
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 195 RISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG-----------TAITE- 242
              T   K  +L  L     +       + +  + LKR+ ++              +++ 
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368

Query: 243 -LPSSFENLPGLEELFVSDCSK----LDKLPDNIGNLESLRHISAAGSAISQLPSSVADS 297
            L +  +    LE + V         L+ +   + NL   R +        ++     D+
Sbjct: 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR--EERITDLPLDN 426

Query: 298 NALLILDFSRCKGLVSLPRSLL-LGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGN 356
               +L    CK L      L   GL+ LGL YI             Y  +++ + L   
Sbjct: 427 GVRSLL--IGCKKLRRFAFYLRQGGLTDLGLSYIGQ-----------YSPNVRWMLLGYV 473

Query: 357 NF--ESLPASIKQLSRLCSLDLRRCNM----LQSLPALPLCLKYLHLTGCNM------LR 404
               E L    +    L  L++R C      + +       L+YL + G         L 
Sbjct: 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533

Query: 405 SLPELPLCLQELDATNCNRL 424
            +      ++ + +     +
Sbjct: 534 QMARPYWNIELIPSRRVPEV 553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 14/95 (14%)

Query: 345 LSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTG 399
           L++L  L L GN  +SLP  +  +L+ L  L L   N LQSLP         L YL+L  
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAH 142

Query: 400 CNMLRSLPE-----LPLCLQELDATNCNRLQSLPE 429
            N L+SLP+     L   L ELD  + N+LQSLPE
Sbjct: 143 -NQLQSLPKGVFDKLTN-LTELD-LSYNQLQSLPE 174

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 15/129 (11%)

Query: 309 KGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQL 368
           K +          L+S+  +   N  +  +   I YL +++ L L GN    + A +K+L
Sbjct: 29  KSVTDAVTQN--ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISA-LKEL 84

Query: 369 SRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCNMLRSLPE----LPLCLQELDATN 420
           + L  L L   N LQSLP         LK L L   N L+SLP+        L  L+  +
Sbjct: 85  TNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAH 142

Query: 421 CNRLQSLPE 429
            N+LQSLP+
Sbjct: 143 -NQLQSLPK 150

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 291 PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLK 349
              +  +  L  L     + L  L    L GL  L  L I+   +  +  +   +   L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 350 SLDLRGNNFESLPASIKQLSRLCSLDL 376
            L+L  N  ESL     Q   L  L L
Sbjct: 84  RLNLSFNALESLSWKTVQGLSLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 4/94 (4%)

Query: 216 NLERFPEILEKMEHLKRINLDG-TAITELPS-SFENLPGLEELFVSDCSKLDKLPDNI-G 272
                   L   E+L  + ++    +  L       L  L  L +     L  +  +   
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH 77

Query: 273 NLESLRHISAAGSAISQLPSSVADSNALLILDFS 306
               L  ++ + +A+  L        +L  L  S
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 336 MEIPQEIAYLSSLKSLDLRGNN-FESLPA-SIKQLSRLCSLDLRRCNMLQSLPA-----L 388
           ++    +    +L  L +      + L    ++ L  L +L + + + L+ +        
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFT 79

Query: 389 PLCLKYLHLTGCNMLRSLPE 408
           P  L  L+L+  N L SL  
Sbjct: 80  PR-LSRLNLSF-NALESLSW 97

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 17/131 (12%)

Query: 311 LVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQL 368
           L +L  +   GL+ L  L +    +  +   +   L+ L +L L  N   SLP  +   L
Sbjct: 47  LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106

Query: 369 SRLCSLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPE-----LPLCLQELDA 418
           ++L  L L   N L+SLP+     L   LK L L   N L+S+P      L   LQ L  
Sbjct: 107 TQLDKLYLGG-NQLKSLPSGVFDRLTK-LKELRL-NTNQLQSIPAGAFDKLTN-LQTLSL 162

Query: 419 TNCNRLQSLPE 429
           +  N+LQS+P 
Sbjct: 163 ST-NQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 349 KSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCNML 403
           + LDL+     +L  +  + L++L  L+L   N LQ+L A        L  L L   N L
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLAN-NQL 95

Query: 404 RSLPEL----PLCLQELDATNCNRLQSLPE 429
            SLP         L +L     N+L+SLP 
Sbjct: 96  ASLPLGVFDHLTQLDKLY-LGGNQLKSLPS 124

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 10/105 (9%)

Query: 311 LVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQL 368
           +  +P         L  + + N  + E+  +    L SL SL L GN    LP S+ + L
Sbjct: 44  IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103

Query: 369 SRLCSLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPE 408
             L  L L   N +  L       L   L  L L   N L+++ +
Sbjct: 104 FSLQLLLLNA-NKINCLRVDAFQDLHN-LNLLSLYD-NKLQTIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 231 KRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSAIS 288
             I L+   I  +P  +F     L  + +S+ +++ +L  +    L SL  +   G+ I+
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 289 QLPSSVADS-NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLS 346
           +LP S+ +   +L +L  +  K +  L       L +L LL + +  +  I +   + L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 347 SLKSLDLRGNNFE 359
           +++++ L  N F 
Sbjct: 153 AIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 337 EIPQEIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPA---LPLC- 391
           EIP  +    ++  + L  N  + +P        +L  +DL   N +  L       L  
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRS 81

Query: 392 LKYLHLTGCNMLRSLPE-----LPLCLQELDATNCNRLQSLPE 429
           L  L L G N +  LP+     L   LQ L   N N++  L  
Sbjct: 82  LNSLVLYG-NKITELPKSLFEGLFS-LQLLL-LNANKINCLRV 121

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 315 PRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQLSRLC 372
              +   L  L  +   N  + +I +      S +  + L  N  E++   + K L  L 
Sbjct: 49  ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108

Query: 373 SLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPE 408
           +L L R N +  +       L   ++ L L   N + ++  
Sbjct: 109 TLML-RSNRITCVGNDSFIGLSS-VRLLSLYD-NQITTVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 19/105 (18%)

Query: 337 EIPQEIAYLSSLKSLDLRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQSLPA-----LP 389
           +IP+ I        L L  N F  L      K+L +L  ++    N +  +         
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGAS 81

Query: 390 LCLKYLHLTGCNMLRSLPE-----LPLCLQELDATNCNRLQSLPE 429
             +  + LT  N L ++       L   L+ L     NR+  +  
Sbjct: 82  -GVNEILLTS-NRLENVQHKMFKGLES-LKTLM-LRSNRITCVGN 122

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIS--TRFCKLRSLVDLFVNGCL 215
           +   L+     IE++ +++  L   + L L     +++IS  +    LR L  L  N   
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLAL-STNNIEKISSLSGMENLRIL-SLGRN--- 80

Query: 216 NLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPD--NIGN 273
            +++   +    + L+ + +    I  L S  E L  L  L++S+  K+    +   +  
Sbjct: 81  LIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNN-KITNWGEIDKLAA 138

Query: 274 LESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSL 314
           L+ L  +  AG+ +         ++   I    R   L  L
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 337 EIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCN--MLQSLPALPLCLKY 394
           ++   ++ L + K L L  NN E + +S+  +  L  L L R     +++L A+   L+ 
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEE 97

Query: 395 LHLTGCNMLRSLPELPLC--LQELDATNCNRLQSLPEI 430
           L ++  N + SL  +     L+ L  +N N++ +  EI
Sbjct: 98  LWISY-NQIASLSGIEKLVNLRVLYMSN-NKITNWGEI 133

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 11/137 (8%)

Query: 225 EKMEHLKRINLDG--TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISA 282
                 +++ L G    I ++ ++   L   + L +S  + ++K+  ++  +E+LR +S 
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKI-SSLSGMENLRILSL 77

Query: 283 AGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI 342
             + I ++ +  A ++ L  L  S  + + SL  S +  L +L +LY+ N  +     EI
Sbjct: 78  GRNLIKKIENLDAVADTLEELWISYNQ-IASL--SGIEKLVNLRVLYMSNNKITNW-GEI 133

Query: 343 AYLS---SLKSLDLRGN 356
             L+    L+ L L GN
Sbjct: 134 DKLAALDKLEDLLLAGN 150

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 15/91 (16%)

Query: 349 KSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNML 403
             L L GN F  +P  +     L  +DL   N + +L       +   L  L L   N L
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQ-LLTLIL-SYNRL 90

Query: 404 RSLPE-----LPLCLQELDATNCNRLQSLPE 429
           R +P      L   L+ L   + N +  +PE
Sbjct: 91  RCIPPRTFDGLKS-LRLLS-LHGNDISVVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 307 RC--KGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS 364
           RC  KGL  LP+ +   ++ L L          +P+E++    L  +DL  N   +L   
Sbjct: 16  RCSNKGLKVLPKGIPRDVTELYLDG---NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ 72

Query: 365 I-KQLSRLCSLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPE 408
               +++L +L L   N L+ +P      L   L+ L L G N +  +PE
Sbjct: 73  SFSNMTQLLTLIL-SYNRLRCIPPRTFDGLKS-LRLLSLHG-NDISVVPE 119

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 16/102 (15%)

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPA----LPLCL 392
           +P  I   +    LDL  N+ +SLP  +  +L+ L  L L   N LQSLP         L
Sbjct: 22  VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSL 78

Query: 393 KYLHLTGCNMLRSLPE-----LPLCLQELDATNCNRLQSLPE 429
            YL+L   N L+SLP      L   L+EL   N N+LQSLP+
Sbjct: 79  TYLNL-STNQLQSLPNGVFDKLTQ-LKELA-LNTNQLQSLPD 117

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 10/106 (9%)

Query: 310 GLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLDLRGNNFESLPASI-KQ 367
            L SLP  +   L+SL  LY+    +  +P  +   L+SL  L+L  N  +SLP  +  +
Sbjct: 39  SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98

Query: 368 LSRLCSLDLRRCNMLQSLPA-----LPLCLKYLHLTGCNMLRSLPE 408
           L++L  L L   N LQSLP      L   LK L L   N L+S+P+
Sbjct: 99  LTQLKELAL-NTNQLQSLPDGVFDKLTQ-LKDLRLYQ-NQLKSVPD 141

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 222 EILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHIS 281
                    + ++L G  I  + +    L   + +  SD  ++ KL D    L  L+ + 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLL 70

Query: 282 AAGSAISQLPSSVADS-NALLILDFSRCKGLVSLPRSL--LLGLSSLGLLYIMNCAVMEI 338
              + I ++   +  +   L  L  +     +     L  L  L SL  L I+   V   
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNS--LVELGDLDPLASLKSLTYLCILRNPVTNK 128

Query: 339 PQ----EIAYLSSLKSLDLR 354
                  I  +  ++ LD +
Sbjct: 129 KHYRLYVIYKVPQVRVLDFQ 148

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 70/326 (21%), Positives = 114/326 (34%), Gaps = 60/326 (18%)

Query: 155 ISGKITRLYLDQSAI--EEVPSSIECLTDLEVLDLRDC----KRLKRISTRFCKLRSLVD 208
           +S  I  L +    +        +  L   +V+ L DC     R K IS+      +L +
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 209 LFVNGC-LNLERFPEILEKMEH----LKRINLDGTAITE-----LPSSFENLPGLEELFV 258
           L +    L       +L+ ++     +++++L    +T      L S+   LP L+EL +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 259 SDCSKLDK--------LPDNIGNLESLR----HISAAGSAISQLPSSVADSNALLILDFS 306
           SD    D         L D    LE L+     +SAA      L S +        L  S
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS--CEPLASVLRAKPDFKELTVS 178

Query: 307 RCK----GLVSLPRSLLLGLSSLGLLYIMNC-----AVMEIPQEIAYLSSLKSLDLRGNN 357
                  G+  L + L      L  L + +C        ++   +A  +SL+ L L  N 
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 358 FES------LPASIKQLSRLCSLDLRRCNM----LQSL-PALPLC--LKYLHLTGCNM-- 402
                     P  +   SRL +L +  C +       L   L     LK L L G  +  
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 403 ------LRSLPELPLCLQELDATNCN 422
                   +L E    L+ L   +C+
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCS 324

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPASI-KQLSRLCSLDLRRCNMLQSLPA----LPLCL 392
           +P  I   ++ + L L  N    L   +   L  L  L L   N L +LP         L
Sbjct: 34  VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQL 90

Query: 393 KYLHLTGCNMLRSLPE-----LPLCLQELDATNCNRLQSLPE 429
             L L G N L  LP      L   L+EL    CN+L  LP 
Sbjct: 91  TVLDL-GTNQLTVLPSAVFDRLVH-LKELF-MCCNKLTELPR 129

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 18/125 (14%)

Query: 243 LPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAG------SAISQLPSSVAD 296
           LP+   +   ++ +  +D   +    D++  L+ +  I            + +L      
Sbjct: 53  LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENL 112

Query: 297 SNALLILDFSRC-----KGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ--EIAYLSSLK 349
             ++L ++   C     KG+++L         +L  L++ +   ++  +    A+ +SL 
Sbjct: 113 QKSMLEMEIISCGNVTDKGIIALHH-----FRNLKYLFLSDLPGVKEKEKIVQAFKTSLP 167

Query: 350 SLDLR 354
           SL+L+
Sbjct: 168 SLELK 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.78
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.57
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.32
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.32
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.14
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.01
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.75
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.69
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.67
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.65
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.72
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.18

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.1e-42  Score=346.78  Aligned_cols=403  Identities=21%  Similarity=0.266  Sum_probs=229.6

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchh---------------------hhcceeecC
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLP---------------------EKLRYLHWD   68 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~---------------------~~L~~L~l~   68 (432)
                      +|+++|.+....+. +..+++|++|++++|++.+      .+|..+..++                     .+|++|+++
T Consensus       205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~  277 (768)
T 3rgz_A          205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG------DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA  277 (768)
T ss_dssp             EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS------CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECC
T ss_pred             EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC------cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECc
Confidence            34455544443333 5555555555555555543      3333344443                     144444444


Q ss_pred             CCCCC-CCCCCC-C-CCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC--CCCCCCceEEEe
Q 042875           69 TYPLR-ILPSNF-K-PKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINF  143 (432)
Q Consensus        69 ~~~~~-~l~~~~-~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l  143 (432)
                      +|.++ .+|..+ . +++|++|++++|.++.    .   +|..++.+++|++|++++|...+.+|.  +..+++|++|++
T Consensus       278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~----~---~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L  350 (768)
T 3rgz_A          278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYG----A---VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL  350 (768)
T ss_dssp             SSEEEESCCCCSCTTCTTCSEEECCSSEEEE----C---CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred             CCccCCccCHHHHhhcCcCCEEECcCCcCCC----c---cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence            44443 444443 2 3566666666666552    2   566677777777777777766655552  555666777777


Q ss_pred             cCcccccccCCCC------------------------------CCccEEEecccccc-cccccccCCCCCCEEeeccccc
Q 042875          144 SYCVTLIEFPQIS------------------------------GKITRLYLDQSAIE-EVPSSIECLTDLEVLDLRDCKR  192 (432)
Q Consensus       144 ~~~~~~~~~~~~~------------------------------~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~  192 (432)
                      ++|.+.+.+|..+                              .+++.|++.+|.+. .+|..+..+++|+.|++++|.+
T Consensus       351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  430 (768)
T 3rgz_A          351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL  430 (768)
T ss_dssp             CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence            6666554444322                              23444444444443 3444555566666666666655


Q ss_pred             cccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-ccCcccCCCCCccEEeecCCCCCCcccccc
Q 042875          193 LKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNI  271 (432)
Q Consensus       193 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  271 (432)
                      .+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|.++
T Consensus       431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence            5555555666666666666666555556666666666666666666666 455556666666666666666666666666


Q ss_pred             CCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhh-------------------------------
Q 042875          272 GNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLL-------------------------------  319 (432)
Q Consensus       272 ~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------------------------  319 (432)
                      ..+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|...+                               
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA  590 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence            66666666666666665 5566666666666666666655444443221                               


Q ss_pred             --------------------------------------cCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-
Q 042875          320 --------------------------------------LGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-  359 (432)
Q Consensus       320 --------------------------------------~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-  359 (432)
                                                            ..++.|+.|++++|.++. +|..++.+++|+.|++++|.++ 
T Consensus       591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  670 (768)
T 3rgz_A          591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG  670 (768)
T ss_dssp             EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence                                                  113456666666666654 6666666666666666666666 


Q ss_pred             ccChhccCCCCCCeeeccCCCCCcccCCC---CCCccEEeccCCCCccccCC--CCCccceecccccccccc
Q 042875          360 SLPASIKQLSRLCSLDLRRCNMLQSLPAL---PLCLKYLHLTGCNMLRSLPE--LPLCLQELDATNCNRLQS  426 (432)
Q Consensus       360 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~  426 (432)
                      .+|..++.+++|+.|++++|++.+.+|..   +++|++|++++|+.-..+|.  .+..+....+.+++.+..
T Consensus       671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred             CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence            56666666666666666666666666633   24566666666554445554  233444455555555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-41  Score=344.66  Aligned_cols=364  Identities=21%  Similarity=0.277  Sum_probs=289.6

Q ss_pred             ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCC-CCCCC--CCCCCceeeeeccccccccCCCccccc
Q 042875           29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLR-ILPSN--FKPKNLVELNLRFSKVEQPWEGEKACV  105 (432)
Q Consensus        29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~-~l~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~  105 (432)
                      ++|++|++++|++.+      .+|..+..++ +|++|++++|.+. .+|..  .++++|++|++++|.++    +.   +
T Consensus       294 ~~L~~L~Ls~n~l~~------~~p~~~~~l~-~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~----~~---~  359 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYG------AVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS----GE---L  359 (768)
T ss_dssp             TTCSEEECCSSEEEE------CCCGGGGGCT-TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE----EC---C
T ss_pred             CcCCEEECcCCcCCC------ccchHHhcCC-CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC----cc---c
Confidence            444444444444443      3444444443 5555555555443 44432  24555555555555554    22   5


Q ss_pred             CCcccCcc-cCceEeccCCccCCcCCC-CCC--CCCceEEEecCcccccccCCC---CCCccEEEecccccc-ccccccc
Q 042875          106 PSSIQNFK-YLSALSFEGCKSLRSFPS-NLH--FVCPVTINFSYCVTLIEFPQI---SGKITRLYLDQSAIE-EVPSSIE  177 (432)
Q Consensus       106 ~~~~~~l~-~L~~L~l~~~~~~~~~~~-~~~--~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~-~~~~~~~  177 (432)
                      |..+..++ +|+.|++++|...+.++. +..  +++|++|++++|.+...+|..   +++|+.|++.+|.+. .+|..+.
T Consensus       360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  439 (768)
T 3rgz_A          360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG  439 (768)
T ss_dssp             CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence            55666665 677777777766655552 333  678999999999888777754   468999999999986 6788999


Q ss_pred             CCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-ccCcccCCCCCccEE
Q 042875          178 CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEEL  256 (432)
Q Consensus       178 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L  256 (432)
                      .+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  519 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL  519 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence            9999999999999999899999999999999999999999899999999999999999999999 788899999999999


Q ss_pred             eecCCCCCCccccccCCccccccccccccccc-ccCcc------------------------------------------
Q 042875          257 FVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSS------------------------------------------  293 (432)
Q Consensus       257 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~------------------------------------------  293 (432)
                      ++++|.+.+.+|..+..+++|+.|++++|.+. .+|..                                          
T Consensus       520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (768)
T 3rgz_A          520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI  599 (768)
T ss_dssp             ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred             ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999775 44432                                          


Q ss_pred             ----------------------------ccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-Cchhhhc
Q 042875          294 ----------------------------VADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAY  344 (432)
Q Consensus       294 ----------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~  344 (432)
                                                  ++.+++|+.|++++|.+.+.+|.. +..++.|+.|++++|.++. +|..++.
T Consensus       600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~  678 (768)
T 3rgz_A          600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDEVGD  678 (768)
T ss_dssp             CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH-HhccccCCEEeCcCCccCCCCChHHhC
Confidence                                        334577899999999988888876 5589999999999999996 9999999


Q ss_pred             CCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccCC--CCCCccEEeccCCCCccccC
Q 042875          345 LSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPA--LPLCLKYLHLTGCNMLRSLP  407 (432)
Q Consensus       345 ~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~  407 (432)
                      +++|+.|++++|+++ .+|..+..+++|++|++++|++.+.+|.  .+..+....+.+|+.+-..|
T Consensus       679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~  744 (768)
T 3rgz_A          679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP  744 (768)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence            999999999999999 8999999999999999999999999995  34567777788888775443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.1e-41  Score=332.35  Aligned_cols=413  Identities=15%  Similarity=0.152  Sum_probs=325.2

Q ss_pred             eEeeccCCceecccCchhhcccccceeeeeccccccccccc---------------------------cccCCccccchh
Q 042875            7 GIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERF---------------------------PMQLPNGLEYLP   59 (432)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~---------------------------~~~~~~~l~~l~   59 (432)
                      -..+|++++.+....|.+++++++|++|++++|.+......                           ....+..+..+.
T Consensus        83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~  162 (636)
T 4eco_A           83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI  162 (636)
T ss_dssp             EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred             EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHH
Confidence            34577788887777778999999999999999976210000                           001111111110


Q ss_pred             h------------------hcceeecC--CCCCCCCCCCC-CCCCceeeeeccccccccCCC--c-cc-------ccCCc
Q 042875           60 E------------------KLRYLHWD--TYPLRILPSNF-KPKNLVELNLRFSKVEQPWEG--E-KA-------CVPSS  108 (432)
Q Consensus        60 ~------------------~L~~L~l~--~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~--~-~~-------~~~~~  108 (432)
                      .                  .++.+.+.  .|.++.+|..+ ++++|++|++++|.++.....  - ..       .+|..
T Consensus       163 ~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~  242 (636)
T 4eco_A          163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED  242 (636)
T ss_dssp             HHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred             HHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh
Confidence            1                  12222222  34555577765 889999999999998751000  0 00       06777


Q ss_pred             cc--CcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcc-ccc-ccCCCC---------CCccEEEecccccccccc
Q 042875          109 IQ--NFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCV-TLI-EFPQIS---------GKITRLYLDQSAIEEVPS  174 (432)
Q Consensus       109 ~~--~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~-~~~~~~---------~~L~~L~l~~~~~~~~~~  174 (432)
                      ++  ++++|++|++++|...+.+| .+.++++|++|++++|. +.+ .+|..+         .+|+.|++.+|.+..+|.
T Consensus       243 l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~  322 (636)
T 4eco_A          243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV  322 (636)
T ss_dssp             CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred             hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence            78  99999999999999888888 56679999999999998 665 566432         789999999999999998


Q ss_pred             --cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCC-CCeeeeccccccccCcccCCCC
Q 042875          175 --SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEH-LKRINLDGTAITELPSSFENLP  251 (432)
Q Consensus       175 --~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~  251 (432)
                        .++.+++|+.|++++|.+.+.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++.+|..+..++
T Consensus       323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~  400 (636)
T 4eco_A          323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS  400 (636)
T ss_dssp             HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTC
T ss_pred             hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcc
Confidence              89999999999999999887888 7888999999999998776 78888889999 9999999999998888777655


Q ss_pred             --CccEEeecCCCCCCccccccC-------CcccccccccccccccccCccc-cCCCCCcEEeccCCCCCCCCchhhhcC
Q 042875          252 --GLEELFVSDCSKLDKLPDNIG-------NLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLG  321 (432)
Q Consensus       252 --~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~  321 (432)
                        +|+.|++++|.+.+..|..+.       .+++|++|++++|.+..+|..+ ..+++|++|++++|.+. .++...+..
T Consensus       401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~  479 (636)
T 4eco_A          401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD  479 (636)
T ss_dssp             SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE
T ss_pred             cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc
Confidence              899999999999888888777       7889999999999999887654 45899999999999866 666654433


Q ss_pred             CC-------CccEEEeeccCCCCCchhhh--cCCCCCEEEeeCCCCcccChhccCCCCCCeeecc------CCCCCcccC
Q 042875          322 LS-------SLGLLYIMNCAVMEIPQEIA--YLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLR------RCNMLQSLP  386 (432)
Q Consensus       322 ~~-------~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~------~~~~~~~~~  386 (432)
                      ..       +|+.|++++|.++.+|..+.  .+++|+.|++++|+++.+|..+..+++|++|+++      +|++.+.+|
T Consensus       480 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             TTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             ccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence            32       89999999999999998887  8999999999999999999999999999999995      466677777


Q ss_pred             CC---CCCccEEeccCCCCccccCC-CCCccceeccccccc
Q 042875          387 AL---PLCLKYLHLTGCNMLRSLPE-LPLCLQELDATNCNR  423 (432)
Q Consensus       387 ~~---~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~  423 (432)
                      ..   +++|++|++++|.. +.+|. ..+.|++|++++|+.
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPN  599 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTT
T ss_pred             HHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCC
Confidence            43   47899999999764 88887 668899999999743

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.5e-39  Score=317.79  Aligned_cols=379  Identities=18%  Similarity=0.195  Sum_probs=227.6

Q ss_pred             EeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCC-CC-CCCCce
Q 042875            8 IFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPS-NF-KPKNLV   85 (432)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~-~~-~~~~L~   85 (432)
                      ..+|+++|.+..+.+.+|.++++|++|++++|++.+      ..|..+..++ +|++|++++|.++.++. .+ ++++|+
T Consensus        36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (606)
T 3t6q_A           36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALK  108 (606)
T ss_dssp             CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE------ECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred             cEEEccCCccCcCChhHhccCccceEEECCCCccce------eChhhccCcc-ccCeeeCCCCcccccChhhhccccccc
Confidence            356778888888888899999999999999998875      4566778886 89999999998875533 33 888899


Q ss_pred             eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCCCCCCCCCceEEEecCcccccccCC---CCCCcc-
Q 042875           86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFPSNLHFVCPVTINFSYCVTLIEFPQ---ISGKIT-  160 (432)
Q Consensus        86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~-  160 (432)
                      +|++++|.++.+       .+..++.+++|++|++++|...+ ..+....+++|++|++++|.+....+.   .+.+++ 
T Consensus       109 ~L~L~~n~i~~l-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3t6q_A          109 HLFFIQTGISSI-------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN  181 (606)
T ss_dssp             EEECTTSCCSCG-------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred             EeeccccCcccC-------CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence            999998888753       23446788888888888877665 345566677777777777755432221   222233 


Q ss_pred             ----------------------------------------------------------------------------EEEe
Q 042875          161 ----------------------------------------------------------------------------RLYL  164 (432)
Q Consensus       161 ----------------------------------------------------------------------------~L~l  164 (432)
                                                                                                  .|++
T Consensus       182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l  261 (606)
T 3t6q_A          182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL  261 (606)
T ss_dssp             EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred             eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence                                                                                        3333


Q ss_pred             cccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-c
Q 042875          165 DQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-E  242 (432)
Q Consensus       165 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~  242 (432)
                      .++.+..++. .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .
T Consensus       262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  340 (606)
T 3t6q_A          262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE  340 (606)
T ss_dssp             TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred             ecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence            3333333332 2455566666666666543 44555566666666666666555444555556666666666665554 3


Q ss_pred             cCc-ccCCCCCccEEeecCCCCCCcc--ccccCCcccccccccccccccc-cCccccCCCCCcEEeccCCCCCCCCchhh
Q 042875          243 LPS-SFENLPGLEELFVSDCSKLDKL--PDNIGNLESLRHISAAGSAISQ-LPSSVADSNALLILDFSRCKGLVSLPRSL  318 (432)
Q Consensus       243 ~~~-~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  318 (432)
                      ++. .+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.. .+..+..+++|++|++++|......+...
T Consensus       341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  420 (606)
T 3t6q_A          341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP  420 (606)
T ss_dssp             CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred             cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence            332 2555566666666665554433  4445555666666666665542 23445555666666666655444333333


Q ss_pred             hcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcc--c--ChhccCCCCCCeeeccCCCCCcccCC---CCC
Q 042875          319 LLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFES--L--PASIKQLSRLCSLDLRRCNMLQSLPA---LPL  390 (432)
Q Consensus       319 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~--l--~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~  390 (432)
                      +..+++|++|++++|.+.. .+..++.+++|++|++++|.++.  +  +..+..+++|++|++++|++.+..|.   .++
T Consensus       421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  500 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK  500 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence            4455556666666665555 34445555666666666665542  1  13455555666666666555444332   224


Q ss_pred             CccEEeccCCC
Q 042875          391 CLKYLHLTGCN  401 (432)
Q Consensus       391 ~L~~L~l~~c~  401 (432)
                      +|++|++++|.
T Consensus       501 ~L~~L~Ls~N~  511 (606)
T 3t6q_A          501 MMNHVDLSHNR  511 (606)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEECCCCc
Confidence            55566665543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.8e-39  Score=325.03  Aligned_cols=408  Identities=16%  Similarity=0.181  Sum_probs=313.0

Q ss_pred             eEeeccCCceecccCchhhcccccceeeee-cccccccccccc-ccC---------------------------------
Q 042875            7 GIFLDLSKIKCINLDPGAFTNMSNLRLLKF-YVPKFYEIERFP-MQL---------------------------------   51 (432)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~i~~~~~~~-~~~---------------------------------   51 (432)
                      -..|+++++.+....|.+|+++++|++|+| ++|.+.+..... ...                                 
T Consensus       325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~  404 (876)
T 4ecn_A          325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL  404 (876)
T ss_dssp             EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred             EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence            455788888888777889999999999999 888776520000 000                                 


Q ss_pred             -----------CccccchhhhcceeecCC--CCCCCCCCCC-CCCCceeeeeccccccccC-------------CCcccc
Q 042875           52 -----------PNGLEYLPEKLRYLHWDT--YPLRILPSNF-KPKNLVELNLRFSKVEQPW-------------EGEKAC  104 (432)
Q Consensus        52 -----------~~~l~~l~~~L~~L~l~~--~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~-------------~~~~~~  104 (432)
                                 +...... ..++.+.+..  |.++.+|..+ ++++|++|++++|.++...             .+.   
T Consensus       405 ~~~l~~~~~~~~i~~~~~-l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~---  480 (876)
T 4ecn_A          405 QDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY---  480 (876)
T ss_dssp             HHHHHTCTTSCCCCCCCC-CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH---
T ss_pred             HHHhhhCccccccccccc-cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc---
Confidence                       0000001 0233333333  4455577765 8889999999999887510             002   


Q ss_pred             cCCccc--CcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcc-ccc-ccCC----------CCCCccEEEeccccc
Q 042875          105 VPSSIQ--NFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCV-TLI-EFPQ----------ISGKITRLYLDQSAI  169 (432)
Q Consensus       105 ~~~~~~--~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~-~~~~----------~~~~L~~L~l~~~~~  169 (432)
                      +|..++  ++++|+.|++++|...+.+| .+.++++|+.|++++|. +.+ .+|.          .+++|+.|++.+|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            677777  99999999999998888888 46678999999999997 555 4553          234899999999999


Q ss_pred             ccccc--cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCC-CCeeeeccccccccCcc
Q 042875          170 EEVPS--SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEH-LKRINLDGTAITELPSS  246 (432)
Q Consensus       170 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~  246 (432)
                      ..+|.  .+.++++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++.+|..
T Consensus       561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~  637 (876)
T 4ecn_A          561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI  637 (876)
T ss_dssp             CBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred             CccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchh
Confidence            99988  8999999999999998876 667 7888999999999998876 78878888888 99999999999988877


Q ss_pred             cCCCCC--ccEEeecCCCCCCccccc---cC--CcccccccccccccccccCcccc-CCCCCcEEeccCCCCCCCCchhh
Q 042875          247 FENLPG--LEELFVSDCSKLDKLPDN---IG--NLESLRHISAAGSAISQLPSSVA-DSNALLILDFSRCKGLVSLPRSL  318 (432)
Q Consensus       247 ~~~l~~--L~~L~l~~~~~~~~~~~~---~~--~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~  318 (432)
                      +..++.  |+.|++++|.+.+.+|..   +.  .+++|+.|++++|.+..+|..+. .+++|+.|++++|.+. .++...
T Consensus       638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  716 (876)
T 4ecn_A          638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS  716 (876)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred             hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence            766654  999999999887755432   22  34589999999999988887654 7889999999998755 666654


Q ss_pred             hcCC-------CCccEEEeeccCCCCCchhhh--cCCCCCEEEeeCCCCcccChhccCCCCCCeeeccC------CCCCc
Q 042875          319 LLGL-------SSLGLLYIMNCAVMEIPQEIA--YLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRR------CNMLQ  383 (432)
Q Consensus       319 ~~~~-------~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~------~~~~~  383 (432)
                      +...       ++|+.|++++|.++.+|..+.  .+++|+.|++++|.++.+|..+..+++|+.|++++      |++.+
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~  796 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR  796 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred             hccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccc
Confidence            4332       389999999999999888886  88999999999999998898889999999999976      66666


Q ss_pred             ccCCC---CCCccEEeccCCCCccccCC-CCCccceeccccccc
Q 042875          384 SLPAL---PLCLKYLHLTGCNMLRSLPE-LPLCLQELDATNCNR  423 (432)
Q Consensus       384 ~~~~~---~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~  423 (432)
                      .+|..   +++|+.|++++|.. +.+|. ..++|+.|++++|+.
T Consensus       797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN  839 (876)
T ss_dssp             CCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred             cChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence            77743   46899999999764 88887 667899999999754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.7e-39  Score=319.66  Aligned_cols=168  Identities=18%  Similarity=0.098  Sum_probs=120.5

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCC-CCCC-CCCCcee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRIL-PSNF-KPKNLVE   86 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l-~~~~-~~~~L~~   86 (432)
                      .+|+++|.+..+.+..|+++++|++|++++|++.+      ..+..+..++ +|++|++++|.++.+ |..+ ++++|++
T Consensus        36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET------IEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred             EEECCCCCcCEeChhhccCCccCcEEeCCCCcccc------cCHHHhhchh-hcCEeECCCCcccccChhhcCCcccCCE
Confidence            46778888888888899999999999999999885      3456677886 999999999988877 5444 8899999


Q ss_pred             eeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCC-CCCCCCCceEEEecCcccccccCCCCCC------
Q 042875           87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVTLIEFPQISGK------  158 (432)
Q Consensus        87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~------  158 (432)
                      |++++|.++.+       .+..++++++|++|++++|...+ .+| .+.++++|++|++++|.+....+..+..      
T Consensus       109 L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3vq2_A          109 LVAVETKLASL-------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ  181 (606)
T ss_dssp             EECTTSCCCCS-------SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred             EEccCCccccc-------cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence            99999998753       23457889999999999987765 456 4667889999999988766544433321      


Q ss_pred             -ccEEEecccccccccccccCCCCCCEEeeccc
Q 042875          159 -ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDC  190 (432)
Q Consensus       159 -L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  190 (432)
                       +..+++.+|.+..++.......+|+.|++++|
T Consensus       182 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n  214 (606)
T 3vq2_A          182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN  214 (606)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             ccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence             22455555555444443333334444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.7e-38  Score=314.19  Aligned_cols=406  Identities=17%  Similarity=0.157  Sum_probs=301.8

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCC-CC-CCCCCceee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILP-SN-FKPKNLVEL   87 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~-~~-~~~~~L~~L   87 (432)
                      +|+++|.+..+.+.+|.++++|++|++++|++.+      ..|..+..++ +|++|++++|.++.++ .. .++++|++|
T Consensus        62 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L  134 (606)
T 3t6q_A           62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF------MAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESL  134 (606)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE------ECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred             EECCCCccceeChhhccCccccCeeeCCCCcccc------cChhhhcccc-cccEeeccccCcccCCcchhccCCcccEE
Confidence            5667777777777888888888888888888775      3455566664 6777777666666542 22 256666666


Q ss_pred             eeccccccccCCCccc----------------c-cCCcccCcccCc--eEeccCCccCCcCCCCCCCC------------
Q 042875           88 NLRFSKVEQPWEGEKA----------------C-VPSSIQNFKYLS--ALSFEGCKSLRSFPSNLHFV------------  136 (432)
Q Consensus        88 ~l~~~~l~~~~~~~~~----------------~-~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~~~------------  136 (432)
                      ++++|.++.+......                . .+..++.+++|+  .|++++|...+..+......            
T Consensus       135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~  214 (606)
T 3t6q_A          135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN  214 (606)
T ss_dssp             ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred             ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh
Confidence            6666665542111000                0 122344455555  45555554443333333222            


Q ss_pred             ----------------------------------------CceEEEecCcccccccC---CCCCCccEEEeccccccccc
Q 042875          137 ----------------------------------------CPVTINFSYCVTLIEFP---QISGKITRLYLDQSAIEEVP  173 (432)
Q Consensus       137 ----------------------------------------~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~  173 (432)
                                                              +|+.|++++|.+....+   ..+++|+.|++.+|.+..+|
T Consensus       215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp  294 (606)
T 3t6q_A          215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP  294 (606)
T ss_dssp             HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC
T ss_pred             HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC
Confidence                                                    34445555544432222   23568999999999999999


Q ss_pred             ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchH-hhhcCCCCCeeeecccccccc---CcccCC
Q 042875          174 SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAITEL---PSSFEN  249 (432)
Q Consensus       174 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~---~~~~~~  249 (432)
                      ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+.++. .+..+++|++|++++|.++..   +..+..
T Consensus       295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  374 (606)
T 3t6q_A          295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN  374 (606)
T ss_dssp             SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred             hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence            9999999999999999998877788899999999999999987766554 488899999999999999854   667899


Q ss_pred             CCCccEEeecCCCCCCccccccCCccccccccccccccccc--CccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccE
Q 042875          250 LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL--PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGL  327 (432)
Q Consensus       250 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  327 (432)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+...  +..+..+++|++|++++|......+. .+..+++|++
T Consensus       375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~  453 (606)
T 3t6q_A          375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQH  453 (606)
T ss_dssp             CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCE
T ss_pred             CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCE
Confidence            99999999999988887788889999999999999998743  33488899999999999986554443 4567899999


Q ss_pred             EEeeccCCCC--C--chhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCCC---CCCccEEeccC
Q 042875          328 LYIMNCAVME--I--PQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPAL---PLCLKYLHLTG  399 (432)
Q Consensus       328 L~l~~~~~~~--~--~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~  399 (432)
                      |++++|.+.+  +  +..+..+++|++|++++|+++.+ |..+..+++|++|++++|++.+..|..   ...| .|++++
T Consensus       454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence            9999999876  2  25688999999999999999955 678899999999999999988777644   3567 999999


Q ss_pred             CCCccccCC----CCCccceeccccccccc
Q 042875          400 CNMLRSLPE----LPLCLQELDATNCNRLQ  425 (432)
Q Consensus       400 c~~l~~l~~----~~~~L~~L~l~~c~~l~  425 (432)
                      |. ++.++.    ..+.|++|+++++|...
T Consensus       533 N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          533 NH-ISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             SC-CCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             Cc-ccccCHhhcccCCCCCEEeCCCCCccc
Confidence            75 444443    35689999999987543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8e-38  Score=310.80  Aligned_cols=393  Identities=18%  Similarity=0.160  Sum_probs=279.6

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC--CCCCCceee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN--FKPKNLVEL   87 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L   87 (432)
                      +|+++|.+..+.+.+|.++++|++|++++|++.+      ..|..+..++ +|++|++++|.++.++..  .++++|++|
T Consensus        61 L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  133 (606)
T 3vq2_A           61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS------FSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKL  133 (606)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC------CCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred             EeCCCCcccccCHHHhhchhhcCEeECCCCcccc------cChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEE
Confidence            6778888889988999999999999999999985      4477888886 999999999998877733  388999999


Q ss_pred             eeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC----------------------------CCCCCCce
Q 042875           88 NLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS----------------------------NLHFVCPV  139 (432)
Q Consensus        88 ~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------------------------~~~~~~L~  139 (432)
                      ++++|.++..   .   +|..++++++|++|++++|...+..+.                            .....+|+
T Consensus       134 ~L~~n~l~~~---~---lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~  207 (606)
T 3vq2_A          134 NVAHNFIHSC---K---LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH  207 (606)
T ss_dssp             ECCSSCCCCC---C---CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred             eCCCCcccce---e---chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence            9999998742   3   677889999999999998866543221                            11223567


Q ss_pred             EEEecCccccc----------------------------------------------------------ccC--CCCCCc
Q 042875          140 TINFSYCVTLI----------------------------------------------------------EFP--QISGKI  159 (432)
Q Consensus       140 ~L~l~~~~~~~----------------------------------------------------------~~~--~~~~~L  159 (432)
                      +|++++|....                                                          ..+  ..+.++
T Consensus       208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L  287 (606)
T 3vq2_A          208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV  287 (606)
T ss_dssp             EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred             eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence            77776664320                                                          000  123456


Q ss_pred             cEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875          160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA  239 (432)
Q Consensus       160 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  239 (432)
                      +.|++.++.+..++ .+..+++|+.|++++|.+ +.+|. + .+++|+.|++++|......  .+..+++|++|++++|.
T Consensus       288 ~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  361 (606)
T 3vq2_A          288 SAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA  361 (606)
T ss_dssp             SEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred             CEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence            66777777776666 677777888888888776 55563 4 7777777777777544433  34567777888887777


Q ss_pred             cccc---CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC--ccccCCCCCcEEeccCCCCCCCC
Q 042875          240 ITEL---PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP--SSVADSNALLILDFSRCKGLVSL  314 (432)
Q Consensus       240 ~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~  314 (432)
                      ++..   +..+..+++|++|++++|.+.. +|..+..+++|++|++++|.+...+  ..+..+++|++|++++|......
T Consensus       362 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (606)
T 3vq2_A          362 LSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF  440 (606)
T ss_dssp             EEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred             cCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence            7743   5667777788888887776443 4566777788888888887776443  35677778888888887755544


Q ss_pred             chhhhcCCCCccEEEeeccCCCC--CchhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCC---C
Q 042875          315 PRSLLLGLSSLGLLYIMNCAVME--IPQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPA---L  388 (432)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~---~  388 (432)
                      +. .+..+++|++|++++|.+.+  +|..++.+++|++|++++|+++.+ |..+..+++|++|++++|++.+..|.   .
T Consensus       441 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  519 (606)
T 3vq2_A          441 DG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ  519 (606)
T ss_dssp             TT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred             hh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence            43 34567778888888887775  566677778888888888877744 55677788888888888877665553   3


Q ss_pred             CCCccEEeccCCCCccccCC---CC-Cccceecccccccc
Q 042875          389 PLCLKYLHLTGCNMLRSLPE---LP-LCLQELDATNCNRL  424 (432)
Q Consensus       389 ~~~L~~L~l~~c~~l~~l~~---~~-~~L~~L~l~~c~~l  424 (432)
                      +++|++|++++|. ++.+|.   .. ++|++|+++++|..
T Consensus       520 l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          520 LYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             CTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred             CCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence            3568888888764 556655   22 35788888776544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.1e-38  Score=308.28  Aligned_cols=404  Identities=21%  Similarity=0.165  Sum_probs=277.1

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCC-CC-CCCCcee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPS-NF-KPKNLVE   86 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~   86 (432)
                      .+|+++|.+..+.+.+|.++++|++|++++|++.+      ..+..+..++ +|++|++++|.++.++. .+ ++++|++
T Consensus        32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE------ECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             EEEccCCccCccChhHhhCCCCceEEECCCCcCCc------cCcccccCch-hCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            46778888888888899999999999999999875      3345677786 99999999998887764 33 8889999


Q ss_pred             eeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCC-CCCCCCCceEEEecCcccccccCCCC---CCc--
Q 042875           87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVTLIEFPQIS---GKI--  159 (432)
Q Consensus        87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L--  159 (432)
                      |++++|.++.+..       ..++.+++|++|++++|.... .+| .+.++++|++|++++|.+....+..+   .++  
T Consensus       105 L~L~~n~l~~l~~-------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  177 (570)
T 2z63_A          105 LVAVETNLASLEN-------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  177 (570)
T ss_dssp             EECTTSCCCCSTT-------CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred             ccccccccccCCC-------ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence            9999998875321       237888999999999887665 455 45668899999998887664433322   233  


Q ss_pred             --cEEEecccccccccccccCCCCCCEEeecccc----------------------------------------------
Q 042875          160 --TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCK----------------------------------------------  191 (432)
Q Consensus       160 --~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------------------------------  191 (432)
                        +.+++.+|.+..++.......+|+.+++++|.                                              
T Consensus       178 ~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l  257 (570)
T 2z63_A          178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  257 (570)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred             hhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence              45555555554433322222234444433321                                              


Q ss_pred             ------------ccccccchhcCCCCccEEEecCccCcccchHhhh--------------------cCCCCCeeeecccc
Q 042875          192 ------------RLKRISTRFCKLRSLVDLFVNGCLNLERFPEILE--------------------KMEHLKRINLDGTA  239 (432)
Q Consensus       192 ------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--------------------~l~~L~~L~l~~~~  239 (432)
                                  ..+..+..+..+++|+.|++++|.+. .+|..+.                    .+++|++++++++.
T Consensus       258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK  336 (570)
T ss_dssp             EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCB
T ss_pred             chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCc
Confidence                        11112223333444555555444332 2333333                    34445555555444


Q ss_pred             ccccCcccCCCCCccEEeecCCCCCCcc--ccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchh
Q 042875          240 ITELPSSFENLPGLEELFVSDCSKLDKL--PDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRS  317 (432)
Q Consensus       240 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  317 (432)
                      +...... ..+++|+.|++++|.+....  +..+..+++|++|++++|.+..++..+..+++|++|++++|......+..
T Consensus       337 ~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          337 GGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             SCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSC
T ss_pred             ccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchh
Confidence            4422111 56677777777777655432  45566778888888888888766666888889999999888765555544


Q ss_pred             hhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc--ccChhccCCCCCCeeeccCCCCCcccCC---CCCC
Q 042875          318 LLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE--SLPASIKQLSRLCSLDLRRCNMLQSLPA---LPLC  391 (432)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~  391 (432)
                      .+..+++|+.|++++|.+.. .+..+..+++|++|++++|.++  .+|..+..+++|++|++++|++.+..|.   .+++
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            56678899999999998887 6667888999999999999887  5888889999999999999988766564   3468


Q ss_pred             ccEEeccCCCCccccCC----CCCccceeccccccccccCCC
Q 042875          392 LKYLHLTGCNMLRSLPE----LPLCLQELDATNCNRLQSLPE  429 (432)
Q Consensus       392 L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~lp~  429 (432)
                      |++|++++|. ++.++.    .+++|++|++++++.-.+.|.
T Consensus       496 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          496 LQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999974 555543    467899999999776655554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-36  Score=306.53  Aligned_cols=405  Identities=22%  Similarity=0.214  Sum_probs=227.3

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC-C-CCCCcee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN-F-KPKNLVE   86 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~   86 (432)
                      .+|+++|.+..+.+..|.++++|++|++++|++.+      ..+..+..++ +|++|++++|.++.++.. + ++++|++
T Consensus        29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------LEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC------CCTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc------cCHHHHhccc-CcCEEECCCCccCccChhhhccCCCCCE
Confidence            46778888888887888899999999999888875      4456677775 888888888888887763 3 7888888


Q ss_pred             eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCC-----CCCCcc
Q 042875           87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQ-----ISGKIT  160 (432)
Q Consensus        87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~L~  160 (432)
                      |++++|.++.+       .+..++.+++|++|++++|...+..+ .+..+++|++|++++|.+....+.     ...+|+
T Consensus       102 L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  174 (680)
T 1ziw_A          102 LHLMSNSIQKI-------KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK  174 (680)
T ss_dssp             EECCSSCCCCC-------CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred             EECCCCccCcc-------ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence            88888887643       33457788888888888877665544 345677777777777765433221     124555


Q ss_pred             EEEecccccccccc----------------------------------------------------cccCC--CCCCEEe
Q 042875          161 RLYLDQSAIEEVPS----------------------------------------------------SIECL--TDLEVLD  186 (432)
Q Consensus       161 ~L~l~~~~~~~~~~----------------------------------------------------~~~~~--~~L~~L~  186 (432)
                      .|++.+|.+..++.                                                    .+..+  ++|+.|+
T Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~  254 (680)
T 1ziw_A          175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD  254 (680)
T ss_dssp             EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred             EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence            66665554433221                                                    12112  1244444


Q ss_pred             eccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc------ccCc----ccCCCCCccEE
Q 042875          187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT------ELPS----SFENLPGLEEL  256 (432)
Q Consensus       187 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------~~~~----~~~~l~~L~~L  256 (432)
                      +++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++++++++...      .+|.    .+..+++|++|
T Consensus       255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L  334 (680)
T 1ziw_A          255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL  334 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred             CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence            4444433333334444444444444444443333333333333333333322111      1111    23334444444


Q ss_pred             eecCCCCCCccccccCCcccccccccccc----------------------------cccc-cCccccCCCCCcEEeccC
Q 042875          257 FVSDCSKLDKLPDNIGNLESLRHISAAGS----------------------------AISQ-LPSSVADSNALLILDFSR  307 (432)
Q Consensus       257 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~----------------------------~~~~-~~~~~~~~~~L~~L~l~~  307 (432)
                      ++++|.+.+..+..+..+++|++|++++|                            .+.. .+..+..+++|+.|++++
T Consensus       335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  414 (680)
T 1ziw_A          335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL  414 (680)
T ss_dssp             ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence            44444444333333444444444444332                            2221 123344455556666655


Q ss_pred             CCCCCCCchhhhcCCCCccEEEeeccCCCC---------------------------CchhhhcCCCCCEEEeeCCCCcc
Q 042875          308 CKGLVSLPRSLLLGLSSLGLLYIMNCAVME---------------------------IPQEIAYLSSLKSLDLRGNNFES  360 (432)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---------------------------~~~~~~~~~~L~~L~l~~n~l~~  360 (432)
                      |...+.++...+..+++|++|++++|.+..                           +|..+..+++|+.|++++|+++.
T Consensus       415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~  494 (680)
T 1ziw_A          415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN  494 (680)
T ss_dssp             SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred             CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence            554443333333344444444444444322                           45556666777777777777775


Q ss_pred             cCh-hccCCCCCCeeeccCCCCCcccC-----------CCCCCccEEeccCCCCccccCC----CCCccceecccccccc
Q 042875          361 LPA-SIKQLSRLCSLDLRRCNMLQSLP-----------ALPLCLKYLHLTGCNMLRSLPE----LPLCLQELDATNCNRL  424 (432)
Q Consensus       361 l~~-~~~~l~~L~~L~l~~~~~~~~~~-----------~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l  424 (432)
                      +++ .+..+++|++|++++|++.+..+           ..+++|++|++++| .++.+|.    ..+.|++|++++ +++
T Consensus       495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l  572 (680)
T 1ziw_A          495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGL-NNL  572 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCC
T ss_pred             CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCC-CCC
Confidence            543 35667777777777776543211           12356777777775 4555553    456788888876 577


Q ss_pred             ccCCC
Q 042875          425 QSLPE  429 (432)
Q Consensus       425 ~~lp~  429 (432)
                      +.+|+
T Consensus       573 ~~l~~  577 (680)
T 1ziw_A          573 NTLPA  577 (680)
T ss_dssp             CCCCT
T ss_pred             CcCCH
Confidence            76664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.9e-37  Score=300.14  Aligned_cols=402  Identities=18%  Similarity=0.168  Sum_probs=247.3

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC--CCCCCcee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN--FKPKNLVE   86 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~--~~~~~L~~   86 (432)
                      .+|+++|.+..+.+..|.++++|++|++++|++.+      ..+..+..++ +|++|++++|.++.++..  .++++|++
T Consensus        30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINT------IEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE------ECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred             EEECcCCccCccChhhhhcCCcccEEECCCCCcCc------cChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcE
Confidence            46778888888888889999999999999999885      4456677886 999999999988877764  38889999


Q ss_pred             eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC--CCCCCCCceEEEecCcccccccCCCC---CCccE
Q 042875           87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVTLIEFPQIS---GKITR  161 (432)
Q Consensus        87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~  161 (432)
                      |++++|.++.+   .   +|..++.+++|++|++++|...+.++  .+..+++|++|++++|.+....+..+   .+++.
T Consensus       103 L~Ls~n~l~~~---~---~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  176 (549)
T 2z81_A          103 LNLMGNPYQTL---G---VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH  176 (549)
T ss_dssp             EECTTCCCSSS---C---SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred             EECCCCccccc---c---hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence            99999988742   2   45678899999999999987666665  56778999999999998877666544   46778


Q ss_pred             EEecccccccccccc-cCCCCCCEEeeccccccccc--c-chhcCCCCccEEEecCccCcccch----HhhhcCCCCCee
Q 042875          162 LYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRI--S-TRFCKLRSLVDLFVNGCLNLERFP----EILEKMEHLKRI  233 (432)
Q Consensus       162 L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~-~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L  233 (432)
                      |++..+....++..+ ..+++|+.|++++|.+.+..  + .....+++|+.|++.++.+.+..+    ..+..+++++.+
T Consensus       177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l  256 (549)
T 2z81_A          177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV  256 (549)
T ss_dssp             EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred             EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence            888888877766644 46888999999988776531  1 223446788888888876654433    233556778888


Q ss_pred             eeccccccccC-------cccCCCCCccEEeecCCCCC----------------------------Ccccccc-CCcccc
Q 042875          234 NLDGTAITELP-------SSFENLPGLEELFVSDCSKL----------------------------DKLPDNI-GNLESL  277 (432)
Q Consensus       234 ~l~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~----------------------------~~~~~~~-~~l~~L  277 (432)
                      +++++.+..++       ..+..+++++.+.+.++.+.                            ..+|..+ ..+++|
T Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L  336 (549)
T 2z81_A          257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL  336 (549)
T ss_dssp             EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTC
T ss_pred             ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccc
Confidence            88777665321       12234445555555544322                            1233222 234445


Q ss_pred             cccccccccccc-c---CccccCCCCCcEEeccCCCCCCCCc-hhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEE
Q 042875          278 RHISAAGSAISQ-L---PSSVADSNALLILDFSRCKGLVSLP-RSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLD  352 (432)
Q Consensus       278 ~~L~l~~~~~~~-~---~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  352 (432)
                      ++|++++|.+.. +   +..++.+++|++|++++|.+.+..+ ...+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus       337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~  416 (549)
T 2z81_A          337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN  416 (549)
T ss_dssp             CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEE
T ss_pred             cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEE
Confidence            555555444431 1   1123344445555555444322110 1123344445555555555444444444444555555


Q ss_pred             eeCCCCcccChhccCCCCCCeeeccCCCCCcccCCCCCCccEEeccCCCCccccCC--CCCccceeccccccccccCC
Q 042875          353 LRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPE--LPLCLQELDATNCNRLQSLP  428 (432)
Q Consensus       353 l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~lp  428 (432)
                      +++|+++.+|..+  .++|++|++++|++.+ ++..+++|++|++++| .++.+|.  ..+.|+.|+++++ +++.+|
T Consensus       417 Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~-~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~  489 (549)
T 2z81_A          417 LSSTGIRVVKTCI--PQTLEVLDVSNNNLDS-FSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVP  489 (549)
T ss_dssp             CTTSCCSCCCTTS--CTTCSEEECCSSCCSC-CCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCC
T ss_pred             CCCCCcccccchh--cCCceEEECCCCChhh-hcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcC
Confidence            5555544444322  2345555555554332 2233445666666664 3445554  3455666666663 454443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-35  Score=298.54  Aligned_cols=401  Identities=20%  Similarity=0.209  Sum_probs=258.1

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCc-cccchhhhcceeecCCCCCCCCCCC-C-CCCCce
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPN-GLEYLPEKLRYLHWDTYPLRILPSN-F-KPKNLV   85 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~l~~l~~~L~~L~l~~~~~~~l~~~-~-~~~~L~   85 (432)
                      .+|+++|.+..+.+..|.++++|++|++++|++.       .+|. .+..++ +|++|++++|.++.++.. + ++++|+
T Consensus        53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-------QLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-------CCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             EEECCCCccCccCHHHHhcccCcCEEECCCCccC-------ccChhhhccCC-CCCEEECCCCccCccChhHccccCCCC
Confidence            3667888888888888999999999999999887       3454 467775 888999988888777643 3 788888


Q ss_pred             eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC---CCCCCCceEEEecCc----------------
Q 042875           86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS---NLHFVCPVTINFSYC----------------  146 (432)
Q Consensus        86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~----------------  146 (432)
                      +|++++|.++..       .+..+.++++|++|++++|...+..+.   ...+++|++|++++|                
T Consensus       125 ~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  197 (680)
T 1ziw_A          125 TLDLSHNGLSST-------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL  197 (680)
T ss_dssp             EEECCSSCCSCC-------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred             EEECCCCccccc-------CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence            888888887643       344456666777777766654332221   122344444444444                


Q ss_pred             -----------------------------------ccccccCCCC-----CCccEEEeccccccccc-ccccCCCCCCEE
Q 042875          147 -----------------------------------VTLIEFPQIS-----GKITRLYLDQSAIEEVP-SSIECLTDLEVL  185 (432)
Q Consensus       147 -----------------------------------~~~~~~~~~~-----~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L  185 (432)
                                                         .+....+..+     .+|+.|++++|.+..++ ..++.+++|+.|
T Consensus       198 ~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (680)
T 1ziw_A          198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF  277 (680)
T ss_dssp             CEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             hhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEe
Confidence                                               3332222222     23888888888876654 467888889999


Q ss_pred             eeccccccccccchhcCCCCccEEEecCccCcc-----cch----HhhhcCCCCCeeeeccccccccC-cccCCCCCccE
Q 042875          186 DLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE-----RFP----EILEKMEHLKRINLDGTAITELP-SSFENLPGLEE  255 (432)
Q Consensus       186 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~----~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~  255 (432)
                      ++++|.+.+..+..+..+++|+.|+++++....     .+|    ..+..+++|++|++++|.++.++ ..+..+++|++
T Consensus       278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  357 (680)
T 1ziw_A          278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY  357 (680)
T ss_dssp             ECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCE
T ss_pred             eCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcE
Confidence            998887766666556666666666665432221     111    13334445555555544444222 22333333333


Q ss_pred             Eeec----------------------------CCCCCCccccccCCccccccccccccccc-ccC-ccccCCCCCcEEec
Q 042875          256 LFVS----------------------------DCSKLDKLPDNIGNLESLRHISAAGSAIS-QLP-SSVADSNALLILDF  305 (432)
Q Consensus       256 L~l~----------------------------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~-~~~~~~~~L~~L~l  305 (432)
                      |+++                            +|.+.+..+..+..+++|+.|++++|.+. .++ ..+..+++|++|++
T Consensus       358 L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  437 (680)
T 1ziw_A          358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL  437 (680)
T ss_dssp             EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred             EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence            3333                            33333333444555566666666666554 232 34444555555555


Q ss_pred             cCCC------------------------CC--CCCchhhhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCC
Q 042875          306 SRCK------------------------GL--VSLPRSLLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNF  358 (432)
Q Consensus       306 ~~~~------------------------~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l  358 (432)
                      ++|.                        ..  +..+. .+..+++|+.|++++|.++.++. .+..+++|++|++++|.+
T Consensus       438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  516 (680)
T 1ziw_A          438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS-PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL  516 (680)
T ss_dssp             CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcceeChhhhhcCcccccchhccccccccccCCc-ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence            5443                        22  12222 35578899999999999999654 578999999999999999


Q ss_pred             cccCh---------hccCCCCCCeeeccCCCCCcccCC----CCCCccEEeccCCCCccccCC----CCCccceeccccc
Q 042875          359 ESLPA---------SIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCNMLRSLPE----LPLCLQELDATNC  421 (432)
Q Consensus       359 ~~l~~---------~~~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c  421 (432)
                      +.++.         .+..+++|++|++++|++. .+|.    .+++|+.|++++| .++.+|.    ..++|++|+++++
T Consensus       517 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             GGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence            86532         3688999999999999876 5552    3478999999885 5777775    4578999999995


Q ss_pred             cccccCC
Q 042875          422 NRLQSLP  428 (432)
Q Consensus       422 ~~l~~lp  428 (432)
                       +++.+|
T Consensus       595 -~l~~~~  600 (680)
T 1ziw_A          595 -LITSVE  600 (680)
T ss_dssp             -CCCBCC
T ss_pred             -cCCccC
Confidence             787765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-37  Score=307.92  Aligned_cols=380  Identities=16%  Similarity=0.196  Sum_probs=311.9

Q ss_pred             ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCC----------------------------
Q 042875           29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFK----------------------------   80 (432)
Q Consensus        29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~----------------------------   80 (432)
                      .+++.|+|+++.+.+      .+|..++.++ +|++|++++|.+..-+..+.                            
T Consensus        81 ~~V~~L~L~~~~l~g------~lp~~l~~L~-~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~  153 (636)
T 4eco_A           81 GRVTGLSLEGFGASG------RVPDAIGQLT-ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYD  153 (636)
T ss_dssp             CCEEEEECTTSCCEE------EECGGGGGCT-TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCC
T ss_pred             CCEEEEEecCcccCC------cCChHHhcCc-cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccC
Confidence            589999999999988      8899999996 99999999996521111110                            


Q ss_pred             --------------------------CCCceeeeec--cccccccCCCcccccCCcccCcccCceEeccCCccCCc----
Q 042875           81 --------------------------PKNLVELNLR--FSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS----  128 (432)
Q Consensus        81 --------------------------~~~L~~L~l~--~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----  128 (432)
                                                ...++.+.+.  .|.++.        +|..++++++|++|++++|.+.+.    
T Consensus       154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~--------ip~~l~~l~~L~~L~Ls~n~l~~~~~~~  225 (636)
T 4eco_A          154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--------VSKAVMRLTKLRQFYMGNSPFVAENICE  225 (636)
T ss_dssp             GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--------ECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred             chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc--------CCHHHhcccCCCEEECcCCccccccccc
Confidence                                      0111222221  233332        788899999999999999998774    


Q ss_pred             -------------CC-CCC--CCCCceEEEecCcccccccCCCC---CCccEEEecccc-cc--cccccccCC------C
Q 042875          129 -------------FP-SNL--HFVCPVTINFSYCVTLIEFPQIS---GKITRLYLDQSA-IE--EVPSSIECL------T  180 (432)
Q Consensus       129 -------------~~-~~~--~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~-~~--~~~~~~~~~------~  180 (432)
                                   +| .+.  ++++|++|++++|.+.+.+|..+   ++|+.|++.+|. +.  .+|..++.+      +
T Consensus       226 ~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~  305 (636)
T 4eco_A          226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE  305 (636)
T ss_dssp             SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred             cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence                         77 455  79999999999999988888654   588999999998 76  488877765      9


Q ss_pred             CCCEEeeccccccccccc--hhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCC-ccEEe
Q 042875          181 DLEVLDLRDCKRLKRIST--RFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPG-LEELF  257 (432)
Q Consensus       181 ~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~  257 (432)
                      +|++|++++|.+. .+|.  .+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.++.+|..+..+++ |++|+
T Consensus       306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~  383 (636)
T 4eco_A          306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS  383 (636)
T ss_dssp             TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred             CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence            9999999999887 7887  89999999999999999887888 888999999999999999999999999999 99999


Q ss_pred             ecCCCCCCccccccCCcc--ccccccccccccc-ccCcccc-------CCCCCcEEeccCCCCCCCCchhhhcCCCCccE
Q 042875          258 VSDCSKLDKLPDNIGNLE--SLRHISAAGSAIS-QLPSSVA-------DSNALLILDFSRCKGLVSLPRSLLLGLSSLGL  327 (432)
Q Consensus       258 l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  327 (432)
                      +++|.+. .+|..+..+.  +|++|++++|.+. ..|..+.       .+++|++|++++|.+. .++...+..+++|+.
T Consensus       384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS  461 (636)
T ss_dssp             CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred             ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence            9999877 7887776654  8999999999997 4556666       6789999999999866 677777778999999


Q ss_pred             EEeeccCCCCCchhhhc--------CCCCCEEEeeCCCCcccChhcc--CCCCCCeeeccCCCCCcccCC---CCCCccE
Q 042875          328 LYIMNCAVMEIPQEIAY--------LSSLKSLDLRGNNFESLPASIK--QLSRLCSLDLRRCNMLQSLPA---LPLCLKY  394 (432)
Q Consensus       328 L~l~~~~~~~~~~~~~~--------~~~L~~L~l~~n~l~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~---~~~~L~~  394 (432)
                      |++++|.++.+|.....        +++|+.|++++|+++.+|..+.  .+++|++|++++|++.+ +|.   .+++|+.
T Consensus       462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~  540 (636)
T 4eco_A          462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG  540 (636)
T ss_dssp             EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred             EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCE
Confidence            99999999988765433        2299999999999999999887  99999999999999876 774   3478999


Q ss_pred             EeccC------CCCccccCC---CCCccceeccccccccccCCC
Q 042875          395 LHLTG------CNMLRSLPE---LPLCLQELDATNCNRLQSLPE  429 (432)
Q Consensus       395 L~l~~------c~~l~~l~~---~~~~L~~L~l~~c~~l~~lp~  429 (432)
                      |++++      |.....+|.   .+++|++|++++| +++.+|.
T Consensus       541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~  583 (636)
T 4eco_A          541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNE  583 (636)
T ss_dssp             EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCS
T ss_pred             EECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCH
Confidence            99965      444455665   5678999999995 6688876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=294.51  Aligned_cols=371  Identities=18%  Similarity=0.182  Sum_probs=245.2

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELN   88 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~   88 (432)
                      .+|+++|.+..+.+..|.++++|++|++++|++.+      ..|..+..++ +|++|++++|.++.+|.. .+++|++|+
T Consensus        25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~   96 (520)
T 2z7x_B           25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQY------LDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLD   96 (520)
T ss_dssp             EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEE
T ss_pred             EEECCCCcccccChhhccccccccEEecCCCccCC------cChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEe
Confidence            46778888888888899999999999999999885      4466788886 999999999999888887 889999999


Q ss_pred             eccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCc--eEEEecCccc--ccccCCCCCC------
Q 042875           89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCP--VTINFSYCVT--LIEFPQISGK------  158 (432)
Q Consensus        89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~------  158 (432)
                      +++|.++.+   .   +|..++.+++|++|++++|...+  ..+..+++|  ++|++++|.+  ....+..++.      
T Consensus        97 L~~N~l~~~---~---~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l  168 (520)
T 2z7x_B           97 LSFNAFDAL---P---ICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL  168 (520)
T ss_dssp             CCSSCCSSC---C---CCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred             ccCCccccc---c---chhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceE
Confidence            999998752   2   56778999999999999987654  234456666  8999988877  4444433333      


Q ss_pred             -----------------------ccEEEecccc-------cccccccccCCCCCCEEeecc-------------------
Q 042875          159 -----------------------ITRLYLDQSA-------IEEVPSSIECLTDLEVLDLRD-------------------  189 (432)
Q Consensus       159 -----------------------L~~L~l~~~~-------~~~~~~~~~~~~~L~~L~l~~-------------------  189 (432)
                                             ++.+++.+|.       +......++.+++|+.|++++                   
T Consensus       169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  248 (520)
T 2z7x_B          169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT  248 (520)
T ss_dssp             EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred             EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence                                   3333444332       111111334444444444444                   


Q ss_pred             --------ccccccccchh-----cCCCCccEEEecCccCcccch-HhhhcC---CCCCeeeeccccccccCcccCCCCC
Q 042875          190 --------CKRLKRISTRF-----CKLRSLVDLFVNGCLNLERFP-EILEKM---EHLKRINLDGTAITELPSSFENLPG  252 (432)
Q Consensus       190 --------~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~~l---~~L~~L~l~~~~~~~~~~~~~~l~~  252 (432)
                              |.+.+.+|..+     ..+++|+.++++++.+  .+| ..+..+   .+++.|+++++.+...+. ...+++
T Consensus       249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~  325 (520)
T 2z7x_B          249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISP  325 (520)
T ss_dssp             CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCC
T ss_pred             ccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCc
Confidence                    33333333333     3444444444444333  222 222222   445666666655553321 256677


Q ss_pred             ccEEeecCCCCCCccccccCCcccccccccccccccc---cCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875          253 LEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ---LPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY  329 (432)
Q Consensus       253 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (432)
                      |++|++++|.+.+..|..+..+++|++|++++|.+..   ++..+..+++|++|++++|...+.++...+..+++|++|+
T Consensus       326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~  405 (520)
T 2z7x_B          326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN  405 (520)
T ss_dssp             CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred             ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence            7788888777777677777777778888887777763   3455677777888888777766556655555667788888


Q ss_pred             eeccCCCC-CchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC----CCCCccEEeccCCC
Q 042875          330 IMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCN  401 (432)
Q Consensus       330 l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~c~  401 (432)
                      +++|.++. +|..+.  ++|+.|++++|+++.+|..+..+++|++|++++|++. .+|.    .+++|++|++.+|+
T Consensus       406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence            88777765 443332  6777888888877777777777778888888877654 4443    23567777777765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.8e-36  Score=305.49  Aligned_cols=402  Identities=21%  Similarity=0.202  Sum_probs=224.4

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccC-CccccchhhhcceeecCCCCCCCC-CCCC-CCCCce
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQL-PNGLEYLPEKLRYLHWDTYPLRIL-PSNF-KPKNLV   85 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~-~~~l~~l~~~L~~L~l~~~~~~~l-~~~~-~~~~L~   85 (432)
                      .||+++|.+..+.+.+|.++++|++|++++|...+      .+ +..+..++ +|++|++++|.++.+ |..+ ++++|+
T Consensus        28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~------~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~  100 (844)
T 3j0a_A           28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL------TIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLF  100 (844)
T ss_dssp             EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC------EECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred             EEECCCCcCCccChhHCcccccCeEEeCCCCCCcc------ccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccC
Confidence            36678888888888888899999999998885443      44 56677886 899999998888755 4444 888899


Q ss_pred             eeeeccccccccCCCcccccCC--cccCcccCceEeccCCccCCcCC--CCCCCCCceEEEecCcccccccCCCC-----
Q 042875           86 ELNLRFSKVEQPWEGEKACVPS--SIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVTLIEFPQIS-----  156 (432)
Q Consensus        86 ~L~l~~~~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~-----  156 (432)
                      +|++++|.++..       ++.  .+.++++|++|++++|...+..+  .+.++++|++|++++|.+....+..+     
T Consensus       101 ~L~Ls~n~l~~~-------~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~  173 (844)
T 3j0a_A          101 ELRLYFCGLSDA-------VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG  173 (844)
T ss_dssp             CEECTTCCCSSC-------CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred             EeeCcCCCCCcc-------cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence            999998888742       333  37888888888888887765433  46678888888888887665444322     


Q ss_pred             CCccEEEeccccccc-ccccccCCCC------CCEEeeccccccccccchh-----------------------------
Q 042875          157 GKITRLYLDQSAIEE-VPSSIECLTD------LEVLDLRDCKRLKRISTRF-----------------------------  200 (432)
Q Consensus       157 ~~L~~L~l~~~~~~~-~~~~~~~~~~------L~~L~l~~~~~~~~~~~~~-----------------------------  200 (432)
                      .+|+.|++..|.+.. .+..++.++.      |+.|++++|.+....+..+                             
T Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~  253 (844)
T 3j0a_A          174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK  253 (844)
T ss_dssp             CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred             CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence            455666666655432 2223333332      5566665553322211111                             


Q ss_pred             -------cC--CCCccEEEecCccCcccchHhhhcCCCCCeeeecccccccc-CcccCCCCCccEEeecCCCCCCccccc
Q 042875          201 -------CK--LRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDN  270 (432)
Q Consensus       201 -------~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~  270 (432)
                             ..  .++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+ +..+..+++|++|++++|.+.+..+..
T Consensus       254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  333 (844)
T 3j0a_A          254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN  333 (844)
T ss_dssp             TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred             CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence                   01  13455555555554444444455555555555555555533 334455555555555555554444445


Q ss_pred             cCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCCC------------------CCc----------------
Q 042875          271 IGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGLV------------------SLP----------------  315 (432)
Q Consensus       271 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~------------------~~~----------------  315 (432)
                      +..+++|+.|++++|.+..++. .+..+++|+.|++++|.+..                  .++                
T Consensus       334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l  413 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL  413 (844)
T ss_dssp             CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCcc
Confidence            5555555555555555543332 34445555555555544221                  111                


Q ss_pred             -----hhhhcCCCCccEEEeeccCCCCCch--hhhcCCCCCEEEeeCCCCccc------ChhccCCCCCCeeeccCCCCC
Q 042875          316 -----RSLLLGLSSLGLLYIMNCAVMEIPQ--EIAYLSSLKSLDLRGNNFESL------PASIKQLSRLCSLDLRRCNML  382 (432)
Q Consensus       316 -----~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~l------~~~~~~l~~L~~L~l~~~~~~  382 (432)
                           ...+..+++|+.|++++|.+..++.  .+..+++|+.|++++|.++..      +..+..+++|++|++++|.+.
T Consensus       414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  493 (844)
T 3j0a_A          414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN  493 (844)
T ss_dssp             CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred             ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence                 0112244555555555555554221  123344555555555544311      123444555555555555544


Q ss_pred             cccCC---CCCCccEEeccCCCCccccCC--CCCccceecccccccccc
Q 042875          383 QSLPA---LPLCLKYLHLTGCNMLRSLPE--LPLCLQELDATNCNRLQS  426 (432)
Q Consensus       383 ~~~~~---~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~  426 (432)
                      +..+.   .+++|+.|++++| .++.++.  ..++|+.|++++ ++++.
T Consensus       494 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~-N~l~~  540 (844)
T 3j0a_A          494 SLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISR-NQLLA  540 (844)
T ss_dssp             TCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEE-ECCCC
T ss_pred             ccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCC-CcCCC
Confidence            33332   2245666666664 3444443  335566666665 34433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.3e-36  Score=292.82  Aligned_cols=395  Identities=17%  Similarity=0.147  Sum_probs=275.8

Q ss_pred             EeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCC-CCCC-CCCCce
Q 042875            8 IFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRIL-PSNF-KPKNLV   85 (432)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l-~~~~-~~~~L~   85 (432)
                      -.+|++++.+..++. .+.  ++|++|++++|++.+      ..+..+..++ +|++|++++|.++.+ |..+ ++++|+
T Consensus         3 ~~l~ls~n~l~~ip~-~~~--~~L~~L~Ls~n~i~~------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPK-DLS--QKTTILNISQNYISE------LWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELE   72 (520)
T ss_dssp             CEEECTTSCCSSCCC-SCC--TTCSEEECCSSCCCC------CCHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred             ceEecCCCCcccccc-ccc--ccccEEECCCCcccc------cChhhccccc-cccEEecCCCccCCcChHHhhcccCCC
Confidence            468899998887764 444  899999999999985      3345778886 999999999999877 4344 899999


Q ss_pred             eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCC-CCCCCCCceEEEecCcccccccCCCCCCc--cE
Q 042875           86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVTLIEFPQISGKI--TR  161 (432)
Q Consensus        86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L--~~  161 (432)
                      +|++++|.++.        +|..  .+++|++|++++|...+ .+| .+..+++|++|++++|.+.......+.++  +.
T Consensus        73 ~L~Ls~N~l~~--------lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~  142 (520)
T 2z7x_B           73 YLDLSHNKLVK--------ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK  142 (520)
T ss_dssp             EEECCSSCCCE--------EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEE
T ss_pred             EEecCCCceee--------cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeE
Confidence            99999999875        5555  89999999999998876 465 56779999999999998876555566777  99


Q ss_pred             EEeccccc---cccccccc--------------------------CCCCCCEEeecccc-------ccccccchhcCCCC
Q 042875          162 LYLDQSAI---EEVPSSIE--------------------------CLTDLEVLDLRDCK-------RLKRISTRFCKLRS  205 (432)
Q Consensus       162 L~l~~~~~---~~~~~~~~--------------------------~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~  205 (432)
                      |++.+|.+   ...|..+.                          .+++|+.+++++|.       +.+.++ .+..+++
T Consensus       143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~  221 (520)
T 2z7x_B          143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK  221 (520)
T ss_dssp             EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT
T ss_pred             EEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccc
Confidence            99999877   23333333                          36667777777765       333333 5677788


Q ss_pred             ccEEEecCccCcccchHhhh---cCCCCCeeeecccccc-ccCccc-----CCCCCccEEeecCCCCCCccc-cccCCc-
Q 042875          206 LVDLFVNGCLNLERFPEILE---KMEHLKRINLDGTAIT-ELPSSF-----ENLPGLEELFVSDCSKLDKLP-DNIGNL-  274 (432)
Q Consensus       206 L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~-~~~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~~~~l-  274 (432)
                      |+.|++.++.+.+..+..+.   ..++|++|++++|.++ .+|..+     ..+++|+.+++++|.+  .+| ..+..+ 
T Consensus       222 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~  299 (520)
T 2z7x_B          222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIF  299 (520)
T ss_dssp             CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHH
T ss_pred             hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhccc
Confidence            88888877765543222211   2468888888888888 677776     7788888888887766  444 222222 


Q ss_pred             --ccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC---CchhhhcCCCCC
Q 042875          275 --ESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME---IPQEIAYLSSLK  349 (432)
Q Consensus       275 --~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~  349 (432)
                        .+|+.|++++|.+...+. ...+++|++|++++|...+..+.. +..+++|+.|++++|.+..   +|..++.+++|+
T Consensus       300 ~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~  377 (520)
T 2z7x_B          300 SNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ  377 (520)
T ss_dssp             HTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC
T ss_pred             ccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCC
Confidence              456677777666553321 246677777777777655544433 3466777777777777775   345566777777


Q ss_pred             EEEeeCCCCcc-cChh-ccCCCCCCeeeccCCCCCcccCCCC-CCccEEeccCCCCccccCC---CCCccceeccccccc
Q 042875          350 SLDLRGNNFES-LPAS-IKQLSRLCSLDLRRCNMLQSLPALP-LCLKYLHLTGCNMLRSLPE---LPLCLQELDATNCNR  423 (432)
Q Consensus       350 ~L~l~~n~l~~-l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~  423 (432)
                      +|++++|.++. +|.. +..+++|++|++++|++.+.++... ++|+.|++++| .++.+|.   ..++|++|++++| +
T Consensus       378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~  455 (520)
T 2z7x_B          378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-Q  455 (520)
T ss_dssp             EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-C
T ss_pred             EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-c
Confidence            77777777774 6653 5666777777777777666555433 56777777775 3555554   4556777777774 5


Q ss_pred             cccCCC
Q 042875          424 LQSLPE  429 (432)
Q Consensus       424 l~~lp~  429 (432)
                      ++.+|+
T Consensus       456 l~~l~~  461 (520)
T 2z7x_B          456 LKSVPD  461 (520)
T ss_dssp             CCCCCT
T ss_pred             CCccCH
Confidence            666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=305.36  Aligned_cols=398  Identities=21%  Similarity=0.202  Sum_probs=254.0

Q ss_pred             eccCCc-eecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCC-CCC---CCCCCCc
Q 042875           10 LDLSKI-KCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRI-LPS---NFKPKNL   84 (432)
Q Consensus        10 l~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-l~~---~~~~~~L   84 (432)
                      ||+++| ....+.+.+|.++++|++|+|++|++.+      ..|..+..++ +|++|++++|.++. ++.   ..++++|
T Consensus        53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~------~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF------LHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE------ECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc------cCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCC
Confidence            556666 3567778889999999999999999886      4577788886 99999999998764 333   2388899


Q ss_pred             eeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC-CCCC--CC------------------------
Q 042875           85 VELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS-NLHF--VC------------------------  137 (432)
Q Consensus        85 ~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~--~~------------------------  137 (432)
                      ++|++++|.++...      .+..++++++|++|++++|.+....+. +..+  ++                        
T Consensus       126 ~~L~Ls~N~l~~~~------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~  199 (844)
T 3j0a_A          126 TRLDLSKNQIRSLY------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN  199 (844)
T ss_dssp             CEEEEESCCCCCCC------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred             CEEECCCCcccccc------cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence            99999999887531      234578888888888888766543321 1111  33                        


Q ss_pred             ------ceEEEecCcccccccCCC-----------------------------------------CCCccEEEecccccc
Q 042875          138 ------PVTINFSYCVTLIEFPQI-----------------------------------------SGKITRLYLDQSAIE  170 (432)
Q Consensus       138 ------L~~L~l~~~~~~~~~~~~-----------------------------------------~~~L~~L~l~~~~~~  170 (432)
                            |+.|++++|.+....+..                                         ..+++.|++.+|.+.
T Consensus       200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~  279 (844)
T 3j0a_A          200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF  279 (844)
T ss_dssp             TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred             ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence                  555555555332211110                                         123455555555444


Q ss_pred             cc-cccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCc-ccC
Q 042875          171 EV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS-SFE  248 (432)
Q Consensus       171 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~  248 (432)
                      .+ +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..++. .+.
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~  359 (844)
T 3j0a_A          280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK  359 (844)
T ss_dssp             EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred             ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence            33 2344555555555555555554444555555555555555555544444455555555555555555554332 345


Q ss_pred             CCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc----------------------cccCCCCCcEEecc
Q 042875          249 NLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS----------------------SVADSNALLILDFS  306 (432)
Q Consensus       249 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----------------------~~~~~~~L~~L~l~  306 (432)
                      .+++|+.|++++|.+..     +..+++|+.+++++|.+..++.                      .+..+++|+.|+++
T Consensus       360 ~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls  434 (844)
T 3j0a_A          360 FLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN  434 (844)
T ss_dssp             SCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEE
T ss_pred             CCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCC
Confidence            55556666665554332     1113333333333333332221                      23467889999999


Q ss_pred             CCCCCCCCchhhhcCCCCccEEEeeccCCCC------CchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCC
Q 042875          307 RCKGLVSLPRSLLLGLSSLGLLYIMNCAVME------IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRC  379 (432)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~  379 (432)
                      +|.+....+...+..+++|+.|++++|.+..      .+..+..+++|+.|++++|.++.+++ .+..+++|++|++++|
T Consensus       435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  514 (844)
T 3j0a_A          435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN  514 (844)
T ss_dssp             SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred             CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence            9986654333334467899999999998864      33457788999999999999986654 4688999999999999


Q ss_pred             CCCcccCCC-CCCccEEeccCCCCccccCCCCCccceeccccccccc
Q 042875          380 NMLQSLPAL-PLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQ  425 (432)
Q Consensus       380 ~~~~~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~  425 (432)
                      ++.+..+.. .++|+.|++++|.--...|..+..|+.|++++.|...
T Consensus       515 ~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          515 RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC  561 (844)
T ss_dssp             CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCC
T ss_pred             CCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCccc
Confidence            876544433 3689999999976555555677789999998866543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.7e-35  Score=296.69  Aligned_cols=379  Identities=15%  Similarity=0.156  Sum_probs=305.4

Q ss_pred             ccceeeeeccccccccccccccCCccccchhhhcceeec-CCCCCCCC-CCC----------------------------
Q 042875           29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHW-DTYPLRIL-PSN----------------------------   78 (432)
Q Consensus        29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l-~~~~~~~l-~~~----------------------------   78 (432)
                      .+++.|+|+++.+.+      .+|..++.++ +|++|+| ++|.+... +..                            
T Consensus       323 ~~V~~L~Ls~~~L~G------~ip~~l~~L~-~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~  395 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKG------RVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD  395 (876)
T ss_dssp             SCEEEEECTTTCCEE------EECGGGGGCT-TCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred             CCEEEEECccCCCCC------cCchHHhccc-cceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence            579999999999998      8999999997 9999999 66643211 000                            


Q ss_pred             ------------------------CCCCCceeeeecc--ccccccCCCcccccCCcccCcccCceEeccCCccCC-----
Q 042875           79 ------------------------FKPKNLVELNLRF--SKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-----  127 (432)
Q Consensus        79 ------------------------~~~~~L~~L~l~~--~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----  127 (432)
                                              .....++.+.+..  |.++.        +|..++++++|+.|++++|.+.+     
T Consensus       396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~--------IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~  467 (876)
T 4ecn_A          396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF--------ISKAIQRLTKLQIIYFANSPFTYDNIAV  467 (876)
T ss_dssp             GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--------ECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred             cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc--------hhHHHhcCCCCCEEECcCCcCCCCcccc
Confidence                                    0112233333332  44442        78889999999999999998877     


Q ss_pred             ------------cCCC-CC--CCCCceEEEecCcccccccCCC---CCCccEEEecccc-cc--cccccccCC-------
Q 042875          128 ------------SFPS-NL--HFVCPVTINFSYCVTLIEFPQI---SGKITRLYLDQSA-IE--EVPSSIECL-------  179 (432)
Q Consensus       128 ------------~~~~-~~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~-~~--~~~~~~~~~-------  179 (432)
                                  .+|. +.  .+++|++|++++|.+.+.+|..   +++|+.|++++|. +.  .+|..++.+       
T Consensus       468 ~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l  547 (876)
T 4ecn_A          468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG  547 (876)
T ss_dssp             SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred             cccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence                        2774 44  7999999999999988888864   4589999999997 76  477655544       


Q ss_pred             CCCCEEeeccccccccccc--hhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCC-ccEE
Q 042875          180 TDLEVLDLRDCKRLKRIST--RFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPG-LEEL  256 (432)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L  256 (432)
                      ++|+.|++++|.+. .+|.  .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.++.+|..+..+++ |+.|
T Consensus       548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred             CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence            59999999999887 7888  8999999999999999877 777 888999999999999999999988999999 9999


Q ss_pred             eecCCCCCCccccccCCcc--cccccccccccccccCc----ccc--CCCCCcEEeccCCCCCCCCchhhhcCCCCccEE
Q 042875          257 FVSDCSKLDKLPDNIGNLE--SLRHISAAGSAISQLPS----SVA--DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLL  328 (432)
Q Consensus       257 ~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  328 (432)
                      ++++|.+. .+|..+..+.  +|+.|++++|.+...++    .+.  ..++|+.|++++|.+. .++...+..+++|+.|
T Consensus       625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI  702 (876)
T ss_dssp             ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred             ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence            99999877 7787776654  49999999999874322    222  3458999999999866 7787777788999999


Q ss_pred             EeeccCCCCCchhhhc--------CCCCCEEEeeCCCCcccChhcc--CCCCCCeeeccCCCCCcccCC---CCCCccEE
Q 042875          329 YIMNCAVMEIPQEIAY--------LSSLKSLDLRGNNFESLPASIK--QLSRLCSLDLRRCNMLQSLPA---LPLCLKYL  395 (432)
Q Consensus       329 ~l~~~~~~~~~~~~~~--------~~~L~~L~l~~n~l~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~---~~~~L~~L  395 (432)
                      ++++|.+..+|..+..        +++|+.|++++|+++.+|..+.  .+++|+.|++++|++.+ +|.   .+++|+.|
T Consensus       703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L  781 (876)
T 4ecn_A          703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF  781 (876)
T ss_dssp             ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred             ECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence            9999999998876543        2389999999999999999887  99999999999999766 664   34789999


Q ss_pred             eccCC------CCccccCC---CCCccceeccccccccccCCC
Q 042875          396 HLTGC------NMLRSLPE---LPLCLQELDATNCNRLQSLPE  429 (432)
Q Consensus       396 ~l~~c------~~l~~l~~---~~~~L~~L~l~~c~~l~~lp~  429 (432)
                      ++++|      .....+|.   .+++|++|++++| +++.+|.
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~  823 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDE  823 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCS
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCH
Confidence            99873      33445564   5778999999996 6688886

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-35  Score=288.95  Aligned_cols=377  Identities=22%  Similarity=0.213  Sum_probs=291.0

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCC--CCCCCCcee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPS--NFKPKNLVE   86 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~--~~~~~~L~~   86 (432)
                      .+|+++|.+..+.+..|.++++|++|++++|++.+      ..+..+..++ +|++|++++|.++.++.  ..++++|++
T Consensus        56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~  128 (570)
T 2z63_A           56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------LALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKE  128 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred             EEECCCCcCCccCcccccCchhCCEEeCcCCcCCc------cCHhhhcCcc-ccccccccccccccCCCccccccccccE
Confidence            36778888888988999999999999999999985      3346677886 99999999999988876  348899999


Q ss_pred             eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCC---------------------------Cc
Q 042875           87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFV---------------------------CP  138 (432)
Q Consensus        87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~---------------------------~L  138 (432)
                      |++++|.++.+   .   +|..++++++|++|++++|......+ .+..++                           +|
T Consensus       129 L~L~~n~l~~~---~---lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L  202 (570)
T 2z63_A          129 LNVAHNLIQSF---K---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL  202 (570)
T ss_dssp             EECCSSCCCCC---C---CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred             EecCCCcccee---c---ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcc
Confidence            99999988742   2   57778899999999998876543222 111222                           45


Q ss_pred             eEEEecCccc----------------------------------------------------------ccccCC---CCC
Q 042875          139 VTINFSYCVT----------------------------------------------------------LIEFPQ---ISG  157 (432)
Q Consensus       139 ~~L~l~~~~~----------------------------------------------------------~~~~~~---~~~  157 (432)
                      +.|++++|..                                                          ....+.   .++
T Consensus       203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~  282 (570)
T 2z63_A          203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT  282 (570)
T ss_dssp             EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred             eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence            5555544310                                                          011111   235


Q ss_pred             CccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc
Q 042875          158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG  237 (432)
Q Consensus       158 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  237 (432)
                      +++.|++.++.+..+|..+..+ +|+.|++++|.+. .+|.  ..+++|+.|++.+|......+.  ..+++|++|++++
T Consensus       283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~  356 (570)
T 2z63_A          283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR  356 (570)
T ss_dssp             TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred             cccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence            6777888888777777777777 8888888887655 4443  4678888898888876655543  6789999999999


Q ss_pred             cccccc---CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC--ccccCCCCCcEEeccCCCCCC
Q 042875          238 TAITEL---PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP--SSVADSNALLILDFSRCKGLV  312 (432)
Q Consensus       238 ~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~  312 (432)
                      |.++..   +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+...+  ..+..+++|++|++++|....
T Consensus       357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred             CccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence            998854   5677889999999999997665443 4788999999999999988543  367889999999999998655


Q ss_pred             CCchhhhcCCCCccEEEeeccCCCC--CchhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCC--
Q 042875          313 SLPRSLLLGLSSLGLLYIMNCAVME--IPQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPA--  387 (432)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~--  387 (432)
                      ..+. .+..+++|++|++++|.+..  +|..+..+++|++|++++|+++.+ |..+..+++|++|++++|++.+..+.  
T Consensus       436 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          436 AFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             CCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            5443 45678999999999999873  888889999999999999999965 77889999999999999987666553  


Q ss_pred             -CCCCccEEeccCCCCcccc
Q 042875          388 -LPLCLKYLHLTGCNMLRSL  406 (432)
Q Consensus       388 -~~~~L~~L~l~~c~~l~~l  406 (432)
                       .+++|+.|++.+|+.-...
T Consensus       515 ~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          515 DRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             TTCTTCCEEECCSSCBCCCT
T ss_pred             hcccCCcEEEecCCcccCCC
Confidence             3478999999998754433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.5e-34  Score=273.66  Aligned_cols=334  Identities=18%  Similarity=0.169  Sum_probs=182.2

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhh-------------cceeecCCCCCCCCC
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEK-------------LRYLHWDTYPLRILP   76 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~-------------L~~L~l~~~~~~~l~   76 (432)
                      +++++|.++.+ |.+++++++|++|++++|++.+      .+|..++.+. +             +++|+++++.++.+|
T Consensus        16 L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~------~~p~~~~~l~-~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           16 PLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWER------NAPPGNGEQR-EMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             -------------------CCHHHHHHHHHHHHH------TSCTTSCCCH-HHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             hhcccCchhhC-ChhHhcccchhhhhccCCcccc------cCCcccccch-hcchhhhhhhhccCCCEEEecCCccccCC
Confidence            56677877554 5789999999999999999987      7787777664 4             477888888777776


Q ss_pred             CCCCCCCceeeeeccccccccCCCccc--------ccCCcccCc-ccCceEeccCCccCCcCCCCCCCCCceEEEecCcc
Q 042875           77 SNFKPKNLVELNLRFSKVEQPWEGEKA--------CVPSSIQNF-KYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCV  147 (432)
Q Consensus        77 ~~~~~~~L~~L~l~~~~l~~~~~~~~~--------~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  147 (432)
                      ..  .++|++|++++|.++.+......        +-...+... ++|++|++++|...+ +|.+..+++|++|++++|.
T Consensus        88 ~~--~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A           88 EL--PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             SC--CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC
T ss_pred             CC--cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc
Confidence            63  35677777777776642110000        000000011 456666666654443 5555556666666666665


Q ss_pred             cccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcC
Q 042875          148 TLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKM  227 (432)
Q Consensus       148 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  227 (432)
                      +. .+|....+++.|++.+|.+..+| .++.+++|+.|++++|.+.+ ++..   .++|+.|++++|.+. .+| .+..+
T Consensus       165 l~-~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l  236 (454)
T 1jl5_A          165 LK-KLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNL  236 (454)
T ss_dssp             CS-CCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTC
T ss_pred             Cc-ccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCC
Confidence            44 24555556666666666666555 45666666666666665433 2221   235666666665444 444 25566


Q ss_pred             CCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccC
Q 042875          228 EHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSR  307 (432)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  307 (432)
                      ++|++|++++|+++.+|..   +++|+.|++++|.+.+ +|..   +++|++|++++|.+..++..   .++|++|++++
T Consensus       237 ~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~  306 (454)
T 1jl5_A          237 PFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASS  306 (454)
T ss_dssp             TTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCS
T ss_pred             CCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcC
Confidence            6666666666666655432   3556666666665443 3322   25666666666665544321   14566666666


Q ss_pred             CCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCc
Q 042875          308 CKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~  383 (432)
                      |.+.+ ++    ...++|+.|++++|.+.++|..   +++|+.|++++|.++.+|.   .+++|++|++++|++.+
T Consensus       307 N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          307 NEIRS-LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             SCCSE-EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS
T ss_pred             CcCCc-cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCc
Confidence            65432 11    1124666777777666665543   4666777777776666665   35667777777666544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.4e-34  Score=284.16  Aligned_cols=392  Identities=18%  Similarity=0.214  Sum_probs=268.9

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCC--CCCC-CCCCce
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRIL--PSNF-KPKNLV   85 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l--~~~~-~~~~L~   85 (432)
                      .+++++|.+..+.+.+|.++++|++|++++|++.+      ..+..++.++ +|++|++++|.++.+  +..+ ++++|+
T Consensus        54 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A           54 VLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS------LSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS------CCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             EEECCCCCcCccChhhccccccCCEEECCCCccCc------cCHHHhccCC-CCcEEECCCCcccccchhhhhhccCCcc
Confidence            36778998999998999999999999999999985      3334478886 999999999998754  4444 899999


Q ss_pred             eeeecccc-ccccCCCcccccC-CcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccC----CCCCC
Q 042875           86 ELNLRFSK-VEQPWEGEKACVP-SSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFP----QISGK  158 (432)
Q Consensus        86 ~L~l~~~~-l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~----~~~~~  158 (432)
                      +|++++|. +..        ++ ..+..+++|++|++++|...+..+ .+..+++|++|+++++.... ++    ..+.+
T Consensus       127 ~L~L~~n~~~~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~  197 (549)
T 2z81_A          127 TLRIGNVETFSE--------IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSS  197 (549)
T ss_dssp             EEEEEESSSCCE--------ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTT
T ss_pred             EEECCCCccccc--------cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhccc
Confidence            99999997 432        43 468899999999999998877666 45668888888888876542 22    23567


Q ss_pred             ccEEEeccccccccc----ccccCCCCCCEEeecccccccccc----chhcCCCCccEEEecCccCcc------------
Q 042875          159 ITRLYLDQSAIEEVP----SSIECLTDLEVLDLRDCKRLKRIS----TRFCKLRSLVDLFVNGCLNLE------------  218 (432)
Q Consensus       159 L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~------------  218 (432)
                      ++.|++.+|.+...+    .....+++|+.|++++|.+.+..+    ..+..+++|+.+++.+|...+            
T Consensus       198 L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  277 (549)
T 2z81_A          198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV  277 (549)
T ss_dssp             BSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCC
T ss_pred             ccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhh
Confidence            888888888776542    122345667777777665543222    222334445555544443221            


Q ss_pred             -----------------------cchHhhhcCCCCCeeeeccccccccCccc-CCCCCccEEeecCCCCCCccc---ccc
Q 042875          219 -----------------------RFPEILEKMEHLKRINLDGTAITELPSSF-ENLPGLEELFVSDCSKLDKLP---DNI  271 (432)
Q Consensus       219 -----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~  271 (432)
                                             .++.......+|+++++++|.+..+|..+ ..+++|+.|++++|.+.+..+   ..+
T Consensus       278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  357 (549)
T 2z81_A          278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK  357 (549)
T ss_dssp             CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred             hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence                                   11122233456777777777777777655 467788888888887766543   235


Q ss_pred             CCcccccccccccccccccC---ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCC
Q 042875          272 GNLESLRHISAAGSAISQLP---SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSL  348 (432)
Q Consensus       272 ~~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  348 (432)
                      ..+++|++|++++|.+..++   ..+..+++|++|++++|.+. .+|.. +..+++|+.|++++|.+..++..+  .++|
T Consensus       358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L  433 (549)
T 2z81_A          358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS-CQWPEKMRFLNLSSTGIRVVKTCI--PQTL  433 (549)
T ss_dssp             TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSC-CCCCTTCCEEECTTSCCSCCCTTS--CTTC
T ss_pred             hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChh-hcccccccEEECCCCCcccccchh--cCCc
Confidence            66788888888888776544   34677788888888887654 44443 345677888888888877766543  3578


Q ss_pred             CEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC--CCCCccEEeccCCCCccccCC----CCCccceecccccc
Q 042875          349 KSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA--LPLCLKYLHLTGCNMLRSLPE----LPLCLQELDATNCN  422 (432)
Q Consensus       349 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~  422 (432)
                      ++|++++|+++.++   ..+++|++|++++|++. .+|.  .+++|++|++++|. ++.++.    ..+.|++|++++++
T Consensus       434 ~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          434 EVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             SEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             eEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCC
Confidence            88888888777654   46777888888887754 5553  34678888888753 444433    45677788887766


Q ss_pred             ccc
Q 042875          423 RLQ  425 (432)
Q Consensus       423 ~l~  425 (432)
                      ...
T Consensus       509 ~~~  511 (549)
T 2z81_A          509 WDC  511 (549)
T ss_dssp             BCC
T ss_pred             ccC
Confidence            443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.9e-34  Score=280.04  Aligned_cols=372  Identities=17%  Similarity=0.135  Sum_probs=253.0

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELN   88 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~   88 (432)
                      .+|+++|.+..+.+.+|.++++|++|++++|++.+      ..|..+..++ +|++|++++|.++.+|.. .+++|++|+
T Consensus        56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~  127 (562)
T 3a79_B           56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS------LDFHVFLFNQ-DLEYLDVSHNRLQNISCC-PMASLRHLD  127 (562)
T ss_dssp             EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE------ECTTTTTTCT-TCCEEECTTSCCCEECSC-CCTTCSEEE
T ss_pred             EEECCCCCccccChhhhccCCCccEEECCCCCCCc------CCHHHhCCCC-CCCEEECCCCcCCccCcc-ccccCCEEE
Confidence            46678888888877888888888888888888875      3456677775 888888888888888777 788888888


Q ss_pred             eccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCc--eEEEecCccc--ccccCCCCC-------
Q 042875           89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCP--VTINFSYCVT--LIEFPQISG-------  157 (432)
Q Consensus        89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~-------  157 (432)
                      +++|.++.+.      +|..++++++|++|++++|.....  .+..+++|  ++|++++|.+  ....+..+.       
T Consensus       128 Ls~N~l~~l~------~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l  199 (562)
T 3a79_B          128 LSFNDFDVLP------VCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL  199 (562)
T ss_dssp             CCSSCCSBCC------CCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred             CCCCCccccC------chHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence            8888877521      346688888888888888766542  33334444  8888888776  333333222       


Q ss_pred             ----------------------CccEEEecccc-----cccccccccCCC---------------------------CCC
Q 042875          158 ----------------------KITRLYLDQSA-----IEEVPSSIECLT---------------------------DLE  183 (432)
Q Consensus       158 ----------------------~L~~L~l~~~~-----~~~~~~~~~~~~---------------------------~L~  183 (432)
                                            +++.+++.+|.     +......+..++                           +|+
T Consensus       200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~  279 (562)
T 3a79_B          200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE  279 (562)
T ss_dssp             EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred             EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence                                  33344444332     011111222233                           344


Q ss_pred             EEeeccccccccccchh-----cCCCCccEEEecCccCcccch-Hhhh---cCCCCCeeeeccccccccCcccCCCCCcc
Q 042875          184 VLDLRDCKRLKRISTRF-----CKLRSLVDLFVNGCLNLERFP-EILE---KMEHLKRINLDGTAITELPSSFENLPGLE  254 (432)
Q Consensus       184 ~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~---~l~~L~~L~l~~~~~~~~~~~~~~l~~L~  254 (432)
                      +|++++|.+.+.+|..+     ..++.|+.+++..+.+  .+| ..+.   ...++++|+++++.+...+. ...+++|+
T Consensus       280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~  356 (562)
T 3a79_B          280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFT  356 (562)
T ss_dssp             EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCC
T ss_pred             EEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCce
Confidence            44444444333333332     2222333333322222  112 1111   12467778887777764331 26788999


Q ss_pred             EEeecCCCCCCccccccCCcccccccccccccccccC---ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEee
Q 042875          255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP---SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM  331 (432)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  331 (432)
                      +|++++|.+.+..|..+..+++|++|++++|.+..++   ..+..+++|++|++++|...+.++...+..+++|+.|+++
T Consensus       357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~  436 (562)
T 3a79_B          357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS  436 (562)
T ss_dssp             EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred             EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence            9999999888888888889999999999999888554   4578889999999999987766776667778899999999


Q ss_pred             ccCCCC-CchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC----CCCCccEEeccCCCC
Q 042875          332 NCAVME-IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCNM  402 (432)
Q Consensus       332 ~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~c~~  402 (432)
                      +|.++. +|..+.  ++|+.|++++|+++.+|..+..+++|++|++++|++. .+|.    .+++|+.|++.+|+.
T Consensus       437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          437 SNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             SSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred             CCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence            999876 443332  6899999999999999888888999999999998865 4553    246789999998764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.6e-33  Score=267.23  Aligned_cols=342  Identities=17%  Similarity=0.233  Sum_probs=245.6

Q ss_pred             cccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCccccc
Q 042875           26 TNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACV  105 (432)
Q Consensus        26 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  105 (432)
                      ..+++++.|+++++.+.       .++ .+..++ +|++|++++|.++.++....+++|++|++++|.++.        +
T Consensus        43 ~~l~~l~~L~l~~~~i~-------~l~-~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~--------~  105 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIK-------SID-GVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--------I  105 (466)
T ss_dssp             HHHHTCCEEECCSSCCC-------CCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------C
T ss_pred             hHhccccEEecCCCCCc-------cCc-chhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCCcccc--------C
Confidence            44677888888877775       334 356665 888888888887777765577888888888887764        3


Q ss_pred             CCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCccccccc-CCCCCCccEEEecccccccccccccCCCCCCE
Q 042875          106 PSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEF-PQISGKITRLYLDQSAIEEVPSSIECLTDLEV  184 (432)
Q Consensus       106 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  184 (432)
                      +. +.++++|++|++++|...+ ++.+..+++|++|++++|.+...- ...+.+|+.|++.+ ....++ .+..+++|+.
T Consensus       106 ~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~  181 (466)
T 1o6v_A          106 TP-LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLK-PLANLTTLER  181 (466)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCE
T ss_pred             hh-hcCCCCCCEEECCCCCCCC-ChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCch-hhccCCCCCE
Confidence            33 6778888888888865443 445677888888888887655321 13456777887753 333333 3777888888


Q ss_pred             EeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCC
Q 042875          185 LDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKL  264 (432)
Q Consensus       185 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  264 (432)
                      |++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.++.++ .+..+++|+.|++++|.+.
T Consensus       182 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          182 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC
T ss_pred             EECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccc
Confidence            88888775442  236778888888888876655443  567788888888888877653 4677788888888888766


Q ss_pred             CccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhc
Q 042875          265 DKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAY  344 (432)
Q Consensus       265 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  344 (432)
                      +..+  +..+++|++|++++|.+..++. +..+++|++|++++|...+..+   +..+++|+.|++++|.+.+++. +..
T Consensus       257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~  329 (466)
T 1o6v_A          257 NLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-VSS  329 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-GGG
T ss_pred             cchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-hcc
Confidence            5443  6778888888888888776655 6778888888888887554333   4467888888888888887654 677


Q ss_pred             CCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccC-CCCCCccEEeccCCC
Q 042875          345 LSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLP-ALPLCLKYLHLTGCN  401 (432)
Q Consensus       345 ~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~c~  401 (432)
                      +++|+.|++++|.++.+ +.+..+++|++|++++|++.+..| ..+++|+.|++.+|+
T Consensus       330 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          330 LTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA  386 (466)
T ss_dssp             CTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred             CccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence            88888888888888876 467788888888888888766555 345678888888864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.3e-32  Score=262.38  Aligned_cols=339  Identities=18%  Similarity=0.250  Sum_probs=257.5

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNL   89 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l   89 (432)
                      +++.++.+..+.  .+..+++|++|++++|++.+       ++. +..++ +|++|++++|.+..++...++++|++|++
T Consensus        51 L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  119 (466)
T 1o6v_A           51 LQADRLGIKSID--GVEYLNNLTQINFSNNQLTD-------ITP-LKNLT-KLVDILMNNNQIADITPLANLTNLTGLTL  119 (466)
T ss_dssp             EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-------CGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             EecCCCCCccCc--chhhhcCCCEEECCCCccCC-------chh-hhccc-cCCEEECCCCccccChhhcCCCCCCEEEC
Confidence            445666555553  47888899999999888874       343 67775 89999998888887777568888999999


Q ss_pred             ccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEeccccc
Q 042875           90 RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAI  169 (432)
Q Consensus        90 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~  169 (432)
                      ++|.++.        ++. +..+++|++|++++|... .++.+..+++|++|+++++.........+++|+.|++.+|.+
T Consensus       120 ~~n~l~~--------~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          120 FNNQITD--------IDP-LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV  189 (466)
T ss_dssp             CSSCCCC--------CGG-GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             CCCCCCC--------ChH-HcCCCCCCEEECCCCccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC
Confidence            8888764        332 788888999999887654 356677788888888864322211123556888888888888


Q ss_pred             ccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCC
Q 042875          170 EEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFEN  249 (432)
Q Consensus       170 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  249 (432)
                      ..++ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+ + ..+..+++|++|++++|.++..+. +..
T Consensus       190 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~  263 (466)
T 1o6v_A          190 SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-LSG  263 (466)
T ss_dssp             CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred             CCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh-hhc
Confidence            7764 47778889999998887665444  6678889999998876554 3 356788889999998888886654 778


Q ss_pred             CCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875          250 LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY  329 (432)
Q Consensus       250 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (432)
                      +++|+.|++++|.+.+..+  +..+++|+.|++++|.+..++. +..+++|+.|++++|...+..+   +..+++|+.|+
T Consensus       264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~  337 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLF  337 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccCCEeE
Confidence            8889999998887665433  6778889999998888876654 6788889999998887665444   34778899999


Q ss_pred             eeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCc
Q 042875          330 IMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       330 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~  383 (432)
                      +++|.+..++ .+..+++|+.|++++|+++.+++ +..+++|++|++++|++.+
T Consensus       338 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          338 FYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             CCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            9988888874 57788889999999988886655 7888889999998887654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5e-33  Score=264.71  Aligned_cols=358  Identities=20%  Similarity=0.218  Sum_probs=227.5

Q ss_pred             CchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCC-CCCCCC-CCCC-------------ce
Q 042875           21 DPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLR-ILPSNF-KPKN-------------LV   85 (432)
Q Consensus        21 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~-~l~~~~-~~~~-------------L~   85 (432)
                      .|+.+. .++|++|++++|.+ +      .+|..++.+. +|++|++++|.+. .+|..+ ++.+             ++
T Consensus         4 ~p~~~~-~~~L~~L~l~~n~l-~------~iP~~i~~L~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~   74 (454)
T 1jl5_A            4 NPRNVS-NTFLQEPLRHSSNL-T------EMPVEAENVK-SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH   74 (454)
T ss_dssp             --------------------------------------C-CHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCS
T ss_pred             cccccc-cccchhhhcccCch-h------hCChhHhccc-chhhhhccCCcccccCCcccccchhcchhhhhhhhccCCC
Confidence            344554 58999999999999 4      7899999996 9999999999775 777765 5554             59


Q ss_pred             eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEec
Q 042875           86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLD  165 (432)
Q Consensus        86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~  165 (432)
                      +|++++|.++.        +|.   -.++|+.|++++|...+ +|..  .++|++|++++|.+. .++...++++.|++.
T Consensus        75 ~L~l~~~~l~~--------lp~---~~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~-~l~~~~~~L~~L~L~  139 (454)
T 1jl5_A           75 ELELNNLGLSS--------LPE---LPPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLK-ALSDLPPLLEYLGVS  139 (454)
T ss_dssp             EEECTTSCCSC--------CCS---CCTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCS-CCCSCCTTCCEEECC
T ss_pred             EEEecCCcccc--------CCC---CcCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccC-cccCCCCCCCEEECc
Confidence            99999999875        443   23789999999987765 6643  479999999998766 355555789999999


Q ss_pred             ccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCc
Q 042875          166 QSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS  245 (432)
Q Consensus       166 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  245 (432)
                      +|.+..+| .++.+++|++|++++|.+.+ +|..   ..+|+.|++++|.+.+ +| .+..+++|++|++++|.++.+|.
T Consensus       140 ~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~  212 (454)
T 1jl5_A          140 NNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD  212 (454)
T ss_dssp             SSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC
Confidence            99999888 68999999999999987654 4443   3589999999987665 55 57889999999999998887765


Q ss_pred             ccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCc
Q 042875          246 SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSL  325 (432)
Q Consensus       246 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  325 (432)
                      .   .++|++|++++|.+. .+|. +..+++|++|++++|.+..++..   .++|++|++++|.+.+ ++.    .+++|
T Consensus       213 ~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~----~~~~L  279 (454)
T 1jl5_A          213 L---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPE----LPQSL  279 (454)
T ss_dssp             C---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCC----CCTTC
T ss_pred             C---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCc----ccCcC
Confidence            3   258899999988766 5664 78889999999999888876653   3678888888887543 332    24667


Q ss_pred             cEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCCCCCCccEEeccCCCCccc
Q 042875          326 GLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRS  405 (432)
Q Consensus       326 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  405 (432)
                      +.|++++|.+..++..   .++|+.|++++|.++.++..   .++|++|++++|++.+ +|..+++|++|++++| .++.
T Consensus       280 ~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N-~l~~  351 (454)
T 1jl5_A          280 TFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPALPPRLERLIASFN-HLAE  351 (454)
T ss_dssp             CEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS-CCSC
T ss_pred             CEEECcCCccCcccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-ccccCCcCCEEECCCC-cccc
Confidence            7777777777664321   24555555555555543311   1355555555554332 4444455555555553 3344


Q ss_pred             cCCCCCccceeccccccccccCCCCC
Q 042875          406 LPELPLCLQELDATNCNRLQSLPEIP  431 (432)
Q Consensus       406 l~~~~~~L~~L~l~~c~~l~~lp~~p  431 (432)
                      +|..+++|++|++++ ++++.+|.+|
T Consensus       352 lp~~l~~L~~L~L~~-N~l~~l~~ip  376 (454)
T 1jl5_A          352 VPELPQNLKQLHVEY-NPLREFPDIP  376 (454)
T ss_dssp             CCCCCTTCCEEECCS-SCCSSCCCCC
T ss_pred             ccchhhhccEEECCC-CCCCcCCCCh
Confidence            444444555555554 2444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.9e-33  Score=264.94  Aligned_cols=358  Identities=14%  Similarity=0.127  Sum_probs=260.6

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCC-CCCC-CC-CCCCcee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLR-ILPS-NF-KPKNLVE   86 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~-~l~~-~~-~~~~L~~   86 (432)
                      ++.++..+..++.  +  .++|++|++++|++.+      ..+..+..++ +|++|++++|.+. .++. .+ ++++|++
T Consensus        15 ~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~------~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~   83 (455)
T 3v47_A           15 AICINRGLHQVPE--L--PAHVNYVDLSLNSIAE------LNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLII   83 (455)
T ss_dssp             EECCSSCCSSCCC--C--CTTCCEEECCSSCCCE------ECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred             cCcCCCCcccCCC--C--CCccCEEEecCCccCc------CChhHhccCc-cccEEECcCCcccceECcccccccccCCE
Confidence            5556655555543  2  2688999999988875      4466778886 8999999988764 4433 23 7888999


Q ss_pred             eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-C--CCCCCCceEEEecCcccccccCC----CCCCc
Q 042875           87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-S--NLHFVCPVTINFSYCVTLIEFPQ----ISGKI  159 (432)
Q Consensus        87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~~----~~~~L  159 (432)
                      |++++|.++..       .|..+..+++|++|++++|...+..+ .  +..+++|++|++++|.+....+.    .+++|
T Consensus        84 L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           84 LKLDYNQFLQL-------ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF  156 (455)
T ss_dssp             EECTTCTTCEE-------CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred             EeCCCCccCcc-------ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence            99999888753       46678888999999999887765443 2  66688899999998887755443    35678


Q ss_pred             cEEEeccccccccc-ccccCC--CCCCEEeeccccccccccc--------hhcCCCCccEEEecCccCcccchHhhhcC-
Q 042875          160 TRLYLDQSAIEEVP-SSIECL--TDLEVLDLRDCKRLKRIST--------RFCKLRSLVDLFVNGCLNLERFPEILEKM-  227 (432)
Q Consensus       160 ~~L~l~~~~~~~~~-~~~~~~--~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-  227 (432)
                      +.|++.+|.+..++ ..+..+  .+++.+++++|.+....+.        .+..+++|+.|++++|.+.+..+..+... 
T Consensus       157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  236 (455)
T 3v47_A          157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI  236 (455)
T ss_dssp             CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence            88888888776543 344433  5778888888776543222        13355788888888887777666665543 


Q ss_pred             --CCCCeeeeccccccccC-----------ccc--CCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-C
Q 042875          228 --EHLKRINLDGTAITELP-----------SSF--ENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-P  291 (432)
Q Consensus       228 --~~L~~L~l~~~~~~~~~-----------~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~  291 (432)
                        .+++.++++++......           ..+  ...++|+.|++++|.+.+..+..+..+++|++|++++|.+..+ +
T Consensus       237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  316 (455)
T 3v47_A          237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD  316 (455)
T ss_dssp             TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence              77888888876543110           011  1235788999998888877788888888999999998888854 5


Q ss_pred             ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccCh-hccCCC
Q 042875          292 SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLS  369 (432)
Q Consensus       292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~  369 (432)
                      ..+..+++|++|++++|.+.. ++...+..+++|++|++++|.+.. .|..+..+++|++|++++|+++.+|. .+..++
T Consensus       317 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  395 (455)
T 3v47_A          317 NAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT  395 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence            577888889999998887543 433446678889999999998888 46678888899999999998887765 457888


Q ss_pred             CCCeeeccCCCCCcccC
Q 042875          370 RLCSLDLRRCNMLQSLP  386 (432)
Q Consensus       370 ~L~~L~l~~~~~~~~~~  386 (432)
                      +|++|++++|++....|
T Consensus       396 ~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          396 SLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCCEEECCSSCBCCCTT
T ss_pred             cccEEEccCCCcccCCC
Confidence            89999999888776665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.8e-32  Score=269.39  Aligned_cols=395  Identities=15%  Similarity=0.130  Sum_probs=228.8

Q ss_pred             EeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCC-CC-CCCCce
Q 042875            8 IFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPS-NF-KPKNLV   85 (432)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~-~~-~~~~L~   85 (432)
                      ..+|++++.+..++. .+.  ++|++|++++|++.+      ..+..+..++ +|++|++++|.++.++. .+ ++++|+
T Consensus        34 ~~l~ls~~~L~~ip~-~~~--~~L~~L~Ls~N~i~~------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~  103 (562)
T 3a79_B           34 SMVDYSNRNLTHVPK-DLP--PRTKALSLSQNSISE------LRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLE  103 (562)
T ss_dssp             CEEECTTSCCCSCCT-TSC--TTCCEEECCSSCCCC------CCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             cEEEcCCCCCccCCC-CCC--CCcCEEECCCCCccc------cChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCC
Confidence            457788887777654 333  788999999998875      3345677886 89999999998886643 33 788999


Q ss_pred             eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCC-CCCCCCCceEEEecCcccccccCCCCCCc--cE
Q 042875           86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVTLIEFPQISGKI--TR  161 (432)
Q Consensus        86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L--~~  161 (432)
                      +|++++|.++.        +|..  .+++|++|++++|.... .+| .+.++++|++|++++|.+.......+.++  +.
T Consensus       104 ~L~Ls~N~l~~--------lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~  173 (562)
T 3a79_B          104 YLDVSHNRLQN--------ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC  173 (562)
T ss_dssp             EEECTTSCCCE--------ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEE
T ss_pred             EEECCCCcCCc--------cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeE
Confidence            99999998874        5555  78889999999887655 333 56678899999999888765444445555  88


Q ss_pred             EEeccccc--c-cccccccC--------------------------CCCCCEEeeccccc----cccccchhcCCCCccE
Q 042875          162 LYLDQSAI--E-EVPSSIEC--------------------------LTDLEVLDLRDCKR----LKRISTRFCKLRSLVD  208 (432)
Q Consensus       162 L~l~~~~~--~-~~~~~~~~--------------------------~~~L~~L~l~~~~~----~~~~~~~~~~~~~L~~  208 (432)
                      |++.+|.+  . ..|..+..                          +++|+.+++++|..    .......+..+++|+.
T Consensus       174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~  253 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN  253 (562)
T ss_dssp             EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred             EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence            88888776  2 22333333                          33444444444320    1111223344445555


Q ss_pred             EEecCccCccc----chHhhhcCCCCCeeeecccccc-ccCccc-----CCCCCccEEeecCCCCCCcccc-ccCC---c
Q 042875          209 LFVNGCLNLER----FPEILEKMEHLKRINLDGTAIT-ELPSSF-----ENLPGLEELFVSDCSKLDKLPD-NIGN---L  274 (432)
Q Consensus       209 L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~-~~~~---l  274 (432)
                      +++.++...+.    ++.. ....+|++|++++|.++ .+|..+     ..++.|+.+++..+.+  .+|. .+..   .
T Consensus       254 L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~  330 (562)
T 3a79_B          254 VTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAE  330 (562)
T ss_dssp             EEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHT
T ss_pred             EEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhcc
Confidence            55544433221    1111 12346677777776666 555444     4444444444444332  2221 1100   1


Q ss_pred             ccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCc---hhhhcCCCCCEE
Q 042875          275 ESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP---QEIAYLSSLKSL  351 (432)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L  351 (432)
                      .+|++|++++|.+...+. ...+++|++|++++|...+..+.. +..+++|+.|++++|.+..++   ..+..+++|+.|
T Consensus       331 ~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             CCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred             CcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence            335555555555442221 145566666666666654433332 345566666666666666532   345566666666


Q ss_pred             EeeCCCCcc-cChh-ccCCCCCCeeeccCCCCCcccCCCC-CCccEEeccCCCCccccCC---CCCccceeccccccccc
Q 042875          352 DLRGNNFES-LPAS-IKQLSRLCSLDLRRCNMLQSLPALP-LCLKYLHLTGCNMLRSLPE---LPLCLQELDATNCNRLQ  425 (432)
Q Consensus       352 ~l~~n~l~~-l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~  425 (432)
                      ++++|.++. +|.. +..+++|++|++++|++.+.++... ++|++|++++| .++.+|.   ..+.|++|++++ ++++
T Consensus       409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~  486 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLK  486 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCC
T ss_pred             ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCC
Confidence            666666664 5543 4556666666666666555555433 46666666664 4455544   345566666666 3555


Q ss_pred             cCCC
Q 042875          426 SLPE  429 (432)
Q Consensus       426 ~lp~  429 (432)
                      .+|+
T Consensus       487 ~l~~  490 (562)
T 3a79_B          487 SVPD  490 (562)
T ss_dssp             CCCT
T ss_pred             CCCH
Confidence            5553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.9e-31  Score=244.27  Aligned_cols=306  Identities=20%  Similarity=0.252  Sum_probs=157.6

Q ss_pred             hhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCccc
Q 042875           24 AFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKA  103 (432)
Q Consensus        24 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~  103 (432)
                      .+..+++|++|+++++.+.+       ++ .+..++ +|++|++++|.++.++....+++|++|++++|.++.       
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~-------~~-~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-------  102 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS-------IQ-GIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-------  102 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC-------CT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-------
T ss_pred             cchhcccccEEEEeCCcccc-------ch-hhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCCcccC-------
Confidence            44556666666666666652       22 345554 666666666666665554466666666666666553       


Q ss_pred             ccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCC
Q 042875          104 CVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLE  183 (432)
Q Consensus       104 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  183 (432)
                       + +.+..+++|++|++++|... .++.+..+++|++|++++|.....                     +..+..+++|+
T Consensus       103 -~-~~~~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~---------------------~~~~~~l~~L~  158 (347)
T 4fmz_A          103 -I-SALQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSD---------------------LSPLSNMTGLN  158 (347)
T ss_dssp             -C-GGGTTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCC---------------------CGGGTTCTTCC
T ss_pred             -c-hHHcCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCccc---------------------ccchhhCCCCc
Confidence             2 13556666666666665433 233344555555555555543321                     12244555555


Q ss_pred             EEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCC
Q 042875          184 VLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSK  263 (432)
Q Consensus       184 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~  263 (432)
                      +|++++|......+  +..+++|+.|++++|.+.+. +. +..+++|+.+++++|.++..+. +..+++|++|++++|.+
T Consensus       159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             EEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCcc
Confidence            55555554333221  44555555555555543322 21 4455555555555555554333 44555555555555544


Q ss_pred             CCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-Cchhh
Q 042875          264 LDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEI  342 (432)
Q Consensus       264 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~  342 (432)
                      ....+  +..+++|++|++++|.+..+ ..+..+++|++|++++|...+ ++  .+..+++|+.|++++|.+.. .+..+
T Consensus       234 ~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l  307 (347)
T 4fmz_A          234 TDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVI  307 (347)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred             CCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHh
Confidence            33222  44555555555555555443 234445555555555554322 21  13345555555555555554 33445


Q ss_pred             hcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCC
Q 042875          343 AYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       343 ~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~  381 (432)
                      +.+++|+.|++++|.++.+++ +..+++|++|++++|++
T Consensus       308 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             HTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             hccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            555556666666655554443 45555555555555553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.8e-31  Score=253.58  Aligned_cols=356  Identities=16%  Similarity=0.132  Sum_probs=262.5

Q ss_pred             eeeeccccccccccccccCCccccchhhhcceeecCCCCCCCC-CCCC-CCCCceeeeeccccccccCCCccccc-CCcc
Q 042875           33 LLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRIL-PSNF-KPKNLVELNLRFSKVEQPWEGEKACV-PSSI  109 (432)
Q Consensus        33 ~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~-~~~~  109 (432)
                      .++.+++.+.       .+|.    +|.+|++|++++|.++.+ +..+ ++++|++|++++|.+..    .   + +..|
T Consensus        14 ~~~c~~~~l~-------~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~----~---i~~~~~   75 (455)
T 3v47_A           14 NAICINRGLH-------QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL----V---IRNNTF   75 (455)
T ss_dssp             EEECCSSCCS-------SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC----E---ECTTTT
T ss_pred             ccCcCCCCcc-------cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc----e---ECcccc
Confidence            4566666665       4554    335899999999998866 3333 89999999999998752    1   3 4568


Q ss_pred             cCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccC-----CCCCCccEEEecccccccc-ccc-ccCCCC
Q 042875          110 QNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFP-----QISGKITRLYLDQSAIEEV-PSS-IECLTD  181 (432)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~  181 (432)
                      ..+++|++|++++|......+ .+..+++|++|++++|.+....+     ..+.+|+.|++.+|.+..+ |.. +..+++
T Consensus        76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            899999999999988776656 56679999999999998875332     3456899999999988776 444 788999


Q ss_pred             CCEEeeccccccccccchhcCC--CCccEEEecCccCcccchHh--------hhcCCCCCeeeecccccc-ccCccc---
Q 042875          182 LEVLDLRDCKRLKRISTRFCKL--RSLVDLFVNGCLNLERFPEI--------LEKMEHLKRINLDGTAIT-ELPSSF---  247 (432)
Q Consensus       182 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~-~~~~~~---  247 (432)
                      |++|++++|.+.+..+..+..+  .+|+.++++++.+....+..        +..+++|++|++++|.++ ..+..+   
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  235 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA  235 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence            9999999998877767666655  68899999988765433222        235578999999999887 233322   


Q ss_pred             CCCCCccEEeecCCCCCCccc----------cccC--Cccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCC
Q 042875          248 ENLPGLEELFVSDCSKLDKLP----------DNIG--NLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSL  314 (432)
Q Consensus       248 ~~l~~L~~L~l~~~~~~~~~~----------~~~~--~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~  314 (432)
                      ...++++.|++++|...+...          ..+.  ..++|+++++++|.+. ..+..+..+++|++|++++|.+.+..
T Consensus       236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence            234789999998875443211          1111  2367888999998887 44666788889999999888865443


Q ss_pred             chhhhcCCCCccEEEeeccCCCCC-chhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCC---CC
Q 042875          315 PRSLLLGLSSLGLLYIMNCAVMEI-PQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPA---LP  389 (432)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~---~~  389 (432)
                      +. .+..+++|++|++++|.+.++ +..+..+++|++|++++|+++.+ |..+..+++|++|++++|++.+..+.   .+
T Consensus       316 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          316 DN-AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             TT-TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hh-HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence            33 355788899999999988874 66778889999999999988855 67788889999999999886654332   34


Q ss_pred             CCccEEeccCCCCccccC
Q 042875          390 LCLKYLHLTGCNMLRSLP  407 (432)
Q Consensus       390 ~~L~~L~l~~c~~l~~l~  407 (432)
                      ++|++|++++|+.-...|
T Consensus       395 ~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          395 TSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSCBCCCTT
T ss_pred             CcccEEEccCCCcccCCC
Confidence            678899998876544433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3e-31  Score=252.66  Aligned_cols=307  Identities=16%  Similarity=0.099  Sum_probs=206.4

Q ss_pred             cCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCC
Q 042875           20 LDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWE   99 (432)
Q Consensus        20 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~   99 (432)
                      ..+..+..+++|++|++++|.+.+       +| .+..++ +|++|++++|.++.++ ...+++|++|++++|.++.   
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~-------~~-~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~---   99 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITD-------MT-GIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN---   99 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCC-------CT-TGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC---
T ss_pred             ccccChhHcCCCCEEEccCCCccc-------Ch-hhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce---
Confidence            344577888999999999998874       34 577776 8999999999888876 5588889999999998875   


Q ss_pred             CcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEeccc-ccccccccccC
Q 042875          100 GEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQS-AIEEVPSSIEC  178 (432)
Q Consensus       100 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~  178 (432)
                           ++  ++.+++|++|++++|...+ ++ +..+++|++|++++|.+...-...+.+|+.|++.+| .++.+  .+..
T Consensus       100 -----~~--~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~  168 (457)
T 3bz5_A          100 -----LD--VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTP  168 (457)
T ss_dssp             -----CC--CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTT
T ss_pred             -----ee--cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--cccc
Confidence                 32  6788899999999886654 44 677888999999888776533345667888888887 34444  4667


Q ss_pred             CCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEee
Q 042875          179 LTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFV  258 (432)
Q Consensus       179 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  258 (432)
                      +++|+.|++++|.+.+ ++  +..+++|+.|++++|.+.+.   .+..+++|++|++++|+++.+|  +..+++|+.|++
T Consensus       169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l  240 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDC  240 (457)
T ss_dssp             CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEEC
T ss_pred             CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEe
Confidence            7888888888887655 33  66778888888888766553   2667788888888888888776  677888888888


Q ss_pred             cCCCCCCccccccCCccccc----------cccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccE
Q 042875          259 SDCSKLDKLPDNIGNLESLR----------HISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGL  327 (432)
Q Consensus       259 ~~~~~~~~~~~~~~~l~~L~----------~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  327 (432)
                      ++|.+.+..+   ..+++|+          .+++++|... .+|  .+.+++|+.|++++|...+.++..    ...|+.
T Consensus       241 ~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~----~~~L~~  311 (457)
T 3bz5_A          241 SVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ----AAGITE  311 (457)
T ss_dssp             CSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT----TCCCSC
T ss_pred             eCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC----CCcceE
Confidence            8887765432   3344444          4444444322 222  345566777777766654444321    112222


Q ss_pred             EEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCC
Q 042875          328 LYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       328 L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~  381 (432)
                      ++            ++.+++|++|++++|+++.++  ++.+++|+.|++++|++
T Consensus       312 L~------------l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l  351 (457)
T 3bz5_A          312 LD------------LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHI  351 (457)
T ss_dssp             CC------------CTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred             ec------------hhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCC
Confidence            21            223345555555555555442  45555555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.98  E-value=8.6e-31  Score=261.79  Aligned_cols=379  Identities=18%  Similarity=0.125  Sum_probs=249.3

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC--CCCCcee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF--KPKNLVE   86 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~~   86 (432)
                      .||+++|.+..+.+.+|.++++|++|+|++|++.+      .-+..+..++ +|++|+|++|.++.++...  ++++|++
T Consensus        56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~------i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC------cChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            57889999999999999999999999999999985      2234577886 9999999999999888653  8999999


Q ss_pred             eeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCC-CCCCCCCceEEEecCcccccccCCCCCC------
Q 042875           87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVTLIEFPQISGK------  158 (432)
Q Consensus        87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~------  158 (432)
                      |++++|.++.+       .+..|+++++|++|++++|.... .++ .+..+++|++|++++|.+....+..+..      
T Consensus       129 L~Ls~N~l~~l-------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~  201 (635)
T 4g8a_A          129 LVAVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  201 (635)
T ss_dssp             EECTTSCCCCS-------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             EECCCCcCCCC-------ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence            99999999864       23348899999999999987754 345 3456899999999998765332211110      


Q ss_pred             -ccEEEecccccccccc---------------------------------------------------------------
Q 042875          159 -ITRLYLDQSAIEEVPS---------------------------------------------------------------  174 (432)
Q Consensus       159 -L~~L~l~~~~~~~~~~---------------------------------------------------------------  174 (432)
                       ...+++..+.+..++.                                                               
T Consensus       202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l  281 (635)
T 4g8a_A          202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  281 (635)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred             hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence             0111111111111000                                                               


Q ss_pred             -----------------------------------------cccCCCCCCEEeecccccccccc----------------
Q 042875          175 -----------------------------------------SIECLTDLEVLDLRDCKRLKRIS----------------  197 (432)
Q Consensus       175 -----------------------------------------~~~~~~~L~~L~l~~~~~~~~~~----------------  197 (432)
                                                               .+.....++.|++.+|.+.....                
T Consensus       282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~  361 (635)
T 4g8a_A          282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG  361 (635)
T ss_dssp             EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred             hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence                                                     01112233334333332211100                


Q ss_pred             ---chhcCCCCccEEEecCccCcc--cchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccc-ccc
Q 042875          198 ---TRFCKLRSLVDLFVNGCLNLE--RFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLP-DNI  271 (432)
Q Consensus       198 ---~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~  271 (432)
                         .....+++|+.++++++....  ..+.....+.+++++++..+.....+..+..+++++.+++..+......+ ..+
T Consensus       362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~  441 (635)
T 4g8a_A          362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF  441 (635)
T ss_dssp             CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred             CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc
Confidence               001123444444444443321  12333444555555555555555445556666777777777665443332 345


Q ss_pred             CCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCC
Q 042875          272 GNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLK  349 (432)
Q Consensus       272 ~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~  349 (432)
                      ..+++++.++++.|.+. ..+..+..++.++.|++++|..........+..+++|++|++++|++.. .|..+..+++|+
T Consensus       442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~  521 (635)
T 4g8a_A          442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  521 (635)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence            66778888888888776 3445567778888888888875555444456677888888888888888 456678888888


Q ss_pred             EEEeeCCCCcccC-hhccCCCCCCeeeccCCCCCcccCCC----CCCccEEeccCCC
Q 042875          350 SLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNMLQSLPAL----PLCLKYLHLTGCN  401 (432)
Q Consensus       350 ~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~c~  401 (432)
                      +|+|++|+++.++ ..++.+++|++|++++|++.+..|..    +++|+.|++.+|+
T Consensus       522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            8888888888664 45778888888888888877766643    2578888888765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=2e-30  Score=239.58  Aligned_cols=303  Identities=18%  Similarity=0.184  Sum_probs=231.1

Q ss_pred             ccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCC
Q 042875           55 LEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLH  134 (432)
Q Consensus        55 l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  134 (432)
                      +..++ +|++|+++++.+..++....+++|++|++++|.++.        ++. +..+++|++|++++|... .++.+..
T Consensus        40 ~~~l~-~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~--------~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~  108 (347)
T 4fmz_A           40 QEELE-SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--------ISP-LSNLVKLTNLYIGTNKIT-DISALQN  108 (347)
T ss_dssp             HHHHT-TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSCCC-CCGGGTT
T ss_pred             chhcc-cccEEEEeCCccccchhhhhcCCccEEEccCCcccc--------chh-hhcCCcCCEEEccCCccc-CchHHcC
Confidence            34564 888888888888888776688888888888888764        333 778888888888887543 3555666


Q ss_pred             CCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCc
Q 042875          135 FVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGC  214 (432)
Q Consensus       135 ~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  214 (432)
                      +++|++|++++|.+.                     .++. +..+++|+.|++++|......+. +..+++|+.|++++|
T Consensus       109 l~~L~~L~l~~n~i~---------------------~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~  165 (347)
T 4fmz_A          109 LTNLRELYLNEDNIS---------------------DISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES  165 (347)
T ss_dssp             CTTCSEEECTTSCCC---------------------CCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS
T ss_pred             CCcCCEEECcCCccc---------------------Cchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC
Confidence            777777777766533                     3333 67789999999999876665544 788999999999998


Q ss_pred             cCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccc
Q 042875          215 LNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV  294 (432)
Q Consensus       215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  294 (432)
                      ......+  +..+++|++|++++|.++.++. +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+..++. +
T Consensus       166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~  239 (347)
T 4fmz_A          166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-L  239 (347)
T ss_dssp             CCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             CcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-h
Confidence            7654433  7788999999999998887665 7788899999999987665443  6778899999999998886665 7


Q ss_pred             cCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCe
Q 042875          295 ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCS  373 (432)
Q Consensus       295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~  373 (432)
                      ..+++|++|++++|.... ++  .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++ ..+..+..+++|++
T Consensus       240 ~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            788889999998887544 32  3557788999999988888874 4778888999999998888 44566788888888


Q ss_pred             eeccCCCCCcccC-CCCCCccEEeccCCC
Q 042875          374 LDLRRCNMLQSLP-ALPLCLKYLHLTGCN  401 (432)
Q Consensus       374 L~l~~~~~~~~~~-~~~~~L~~L~l~~c~  401 (432)
                      |++++|++.+..| ..+++|++|++++|+
T Consensus       316 L~L~~n~l~~~~~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          316 LFLSQNHITDIRPLASLSKMDSADFANQV  344 (347)
T ss_dssp             EECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred             EEccCCccccccChhhhhccceeehhhhc
Confidence            9888888665555 345677777777764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=8.4e-30  Score=245.61  Aligned_cols=295  Identities=20%  Similarity=0.194  Sum_probs=190.0

Q ss_pred             hhcceeecCCCCCCCCCC-CC-CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCC
Q 042875           60 EKLRYLHWDTYPLRILPS-NF-KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFV  136 (432)
Q Consensus        60 ~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~  136 (432)
                      .+++.|++++|.++.++. .+ ++++|++|++++|.++.+       .|..|.++++|+.|++++|......+ .+.+++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  104 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-------EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS  104 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-------ChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence            366667777666665533 22 666677777777666542       34456666777777776655433222 234566


Q ss_pred             CceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccC
Q 042875          137 CPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLN  216 (432)
Q Consensus       137 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  216 (432)
                      +|++|++++|.+...                    .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus       105 ~L~~L~Ls~n~i~~~--------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A          105 NLTKLDISENKIVIL--------------------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             TCCEEECTTSCCCEE--------------------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             CCCEEECCCCccccC--------------------ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            666666666654421                    233455666777777777666555555666677777777777666


Q ss_pred             cccchHhhhcCCCCCeeeeccccccccC-cccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccc
Q 042875          217 LERFPEILEKMEHLKRINLDGTAITELP-SSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSV  294 (432)
Q Consensus       217 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~  294 (432)
                      ....+..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|...+.++.......+|++|++++|.+..++ ..+
T Consensus       165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  244 (477)
T 2id5_A          165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV  244 (477)
T ss_dssp             SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred             cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence            5555556667777777777777776443 35666777777777777766666665555567777777777777665 346


Q ss_pred             cCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCC
Q 042875          295 ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLC  372 (432)
Q Consensus       295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~  372 (432)
                      ..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.. .+..+..+++|+.|++++|+++.++. .+..+++|+
T Consensus       245 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  323 (477)
T 2id5_A          245 RHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE  323 (477)
T ss_dssp             TTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred             cCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence            66777777777777643 3333345566777777777777777 45566777777777777777776654 346677777


Q ss_pred             eeeccCCCCC
Q 042875          373 SLDLRRCNML  382 (432)
Q Consensus       373 ~L~l~~~~~~  382 (432)
                      +|++++|++.
T Consensus       324 ~L~l~~N~l~  333 (477)
T 2id5_A          324 TLILDSNPLA  333 (477)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEccCCCcc
Confidence            7777777653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=6.2e-30  Score=243.62  Aligned_cols=323  Identities=16%  Similarity=0.148  Sum_probs=247.4

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELN   88 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~   88 (432)
                      .+|++++.+..+.  .+..+++|++|++++|++.+       ++  ++.++ +|++|++++|.++.++ ..++++|++|+
T Consensus        46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-------~~--~~~l~-~L~~L~Ls~N~l~~~~-~~~l~~L~~L~  112 (457)
T 3bz5_A           46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-------LD--LSQNT-NLTYLACDSNKLTNLD-VTPLTKLTYLN  112 (457)
T ss_dssp             EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-------CC--CTTCT-TCSEEECCSSCCSCCC-CTTCTTCCEEE
T ss_pred             EEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-------Ec--cccCC-CCCEEECcCCCCceee-cCCCCcCCEEE
Confidence            3677888777763  79999999999999999985       33  67786 9999999999999886 55899999999


Q ss_pred             eccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccC-CCCCCccEEEeccc
Q 042875           89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFP-QISGKITRLYLDQS  167 (432)
Q Consensus        89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~  167 (432)
                      +++|.++.        ++  ++.+++|++|++++|...+ + ++..+++|++|++++|...+.++ ..+++|+.|++++|
T Consensus       113 L~~N~l~~--------l~--~~~l~~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          113 CDTNKLTK--------LD--VSQNPLLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             CCSSCCSC--------CC--CTTCTTCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred             CCCCcCCe--------ec--CCCCCcCCEEECCCCccce-e-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence            99999875        33  7889999999999987765 3 47789999999999997665553 35678999999999


Q ss_pred             ccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCccc
Q 042875          168 AIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSF  247 (432)
Q Consensus       168 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  247 (432)
                      .+..+|  +..+++|+.|++++|.+.+.   .+..+++|+.|++++|.+.+ +|  +..+++|++|++++|.++.++  .
T Consensus       181 ~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~  250 (457)
T 3bz5_A          181 KITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--V  250 (457)
T ss_dssp             CCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred             ccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--H
Confidence            999887  88899999999999987664   37789999999999998776 55  778999999999999999765  3


Q ss_pred             CCCCCcc----------EEeecCCCCCCccccccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCch
Q 042875          248 ENLPGLE----------ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPR  316 (432)
Q Consensus       248 ~~l~~L~----------~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~  316 (432)
                      ..+++|+          .+++++|...+.+|  +..+++|+.|++++|... .++.   ..++++.+++++|        
T Consensus       251 ~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~--------  317 (457)
T 3bz5_A          251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN--------  317 (457)
T ss_dssp             TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC--------
T ss_pred             HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc--------
Confidence            4455554          55555665555555  467899999999999754 3332   3345555555443        


Q ss_pred             hhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChh------------ccCCCCCCeeeccCCCCCcc
Q 042875          317 SLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS------------IKQLSRLCSLDLRRCNMLQS  384 (432)
Q Consensus       317 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~------------~~~l~~L~~L~l~~~~~~~~  384 (432)
                            ++|+.|++++|.++.++  ++.+++|+.|++++|+++.++..            ...+..|..+++++|++.+.
T Consensus       318 ------~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~  389 (457)
T 3bz5_A          318 ------PKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIA  389 (457)
T ss_dssp             ------TTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEE
T ss_pred             ------ccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccccccccccCCcEEecceeeecCccccccCcEEEE
Confidence                  46777777777777763  67777788888887777654310            01234455666666666666


Q ss_pred             cCC
Q 042875          385 LPA  387 (432)
Q Consensus       385 ~~~  387 (432)
                      +|.
T Consensus       390 ip~  392 (457)
T 3bz5_A          390 VSP  392 (457)
T ss_dssp             CCT
T ss_pred             cCh
Confidence            653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=244.76  Aligned_cols=310  Identities=16%  Similarity=0.149  Sum_probs=194.6

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCC-CCCC-CCCCceee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRIL-PSNF-KPKNLVEL   87 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L   87 (432)
                      ++.+++.+..+. ..+.  +++++|++++|++.+      ..+..+..++ +|++|++++|.++.+ +..+ ++++|++|
T Consensus        16 v~c~~~~l~~ip-~~~~--~~l~~L~L~~n~l~~------~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   85 (477)
T 2id5_A           16 VLCHRKRFVAVP-EGIP--TETRLLDLGKNRIKT------LNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTL   85 (477)
T ss_dssp             EECCSCCCSSCC-SCCC--TTCSEEECCSSCCCE------ECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             EEeCCCCcCcCC-CCCC--CCCcEEECCCCccce------ECHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEE
Confidence            444555444443 2332  467778888877765      3345666675 788888887777655 3333 77778888


Q ss_pred             eeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCC---CCCCccEEE
Q 042875           88 NLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQ---ISGKITRLY  163 (432)
Q Consensus        88 ~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~  163 (432)
                      ++++|.++.+.       +..+..+++|+.|++++|......+ .+..+++|++|++++|.+....+.   .+.+|+.|+
T Consensus        86 ~L~~n~l~~~~-------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           86 GLRSNRLKLIP-------LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             ECCSSCCCSCC-------TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             ECCCCcCCccC-------cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            88877776431       2236777788888888776655544 455677788888877766543332   334666777


Q ss_pred             ecccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccc
Q 042875          164 LDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITE  242 (432)
Q Consensus       164 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  242 (432)
                      +.+|.+..++. .+..+++|+.|++++|.+....+..+..+++|+.|++++|...+.++.......+|++|++++|.++.
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  238 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA  238 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence            77766666554 46667777777777776655555566667777777777766666555555555577777777777766


Q ss_pred             cC-cccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCCCCchhhhc
Q 042875          243 LP-SSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLVSLPRSLLL  320 (432)
Q Consensus       243 ~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  320 (432)
                      ++ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+. .++...+.
T Consensus       239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~  317 (477)
T 2id5_A          239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFH  317 (477)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBS
T ss_pred             cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcC
Confidence            55 3456667777777777666555555566666677777776666633 445556666666666666533 33433444


Q ss_pred             CCCCccEEEeeccCCCC
Q 042875          321 GLSSLGLLYIMNCAVME  337 (432)
Q Consensus       321 ~~~~L~~L~l~~~~~~~  337 (432)
                      .+++|+.|++++|.+..
T Consensus       318 ~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          318 SVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CGGGCCEEECCSSCEEC
T ss_pred             CCcccCEEEccCCCccC
Confidence            55666666666665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.6e-29  Score=235.67  Aligned_cols=301  Identities=16%  Similarity=0.178  Sum_probs=149.6

Q ss_pred             cccceeeeeccccccccccccccCCcc-ccchhhhcceeecCCCCCCCCCCC-C-CCCCceeeeeccccccccCCCcccc
Q 042875           28 MSNLRLLKFYVPKFYEIERFPMQLPNG-LEYLPEKLRYLHWDTYPLRILPSN-F-KPKNLVELNLRFSKVEQPWEGEKAC  104 (432)
Q Consensus        28 l~~L~~L~l~~~~i~~~~~~~~~~~~~-l~~l~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~l~~~~~~~~~~  104 (432)
                      ++++++|+++++.+.       .+|.. +..++ +|++|+++++.++.++.. + .+++|++|++++|.++.+       
T Consensus        44 l~~l~~l~l~~~~l~-------~l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-------  108 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-------KLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-------  108 (390)
T ss_dssp             GCCCSEEEEESCEES-------EECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-------
T ss_pred             cCCceEEEecCCchh-------hCChhHhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-------
Confidence            345555555555554       23332 23343 555555555555444331 1 445555555555554432       


Q ss_pred             cCCcccCcccCceEeccCCccCCcCC-C-CCCCCCceEEEecCcccccccCCCCCCccEEEecccccccc-cccccCCCC
Q 042875          105 VPSSIQNFKYLSALSFEGCKSLRSFP-S-NLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEV-PSSIECLTD  181 (432)
Q Consensus       105 ~~~~~~~l~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~  181 (432)
                      .|..++.+++|++|++++|... .++ . +..+++|++|++++|.+.                     .+ +..+..+++
T Consensus       109 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~---------------------~~~~~~~~~l~~  166 (390)
T 3o6n_A          109 PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE---------------------RIEDDTFQATTS  166 (390)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC---------------------BCCTTTTSSCTT
T ss_pred             CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC---------------------ccChhhccCCCC
Confidence            2233445555555555554333 222 1 233444444444444322                     22 234555666


Q ss_pred             CCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCC
Q 042875          182 LEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDC  261 (432)
Q Consensus       182 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~  261 (432)
                      |++|++++|.+...   .+..+++|+.+++++|.+..     +....+|++|++++|.+..++..  ..++|+.|++++|
T Consensus       167 L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n  236 (390)
T 3o6n_A          167 LQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHN  236 (390)
T ss_dssp             CCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSS
T ss_pred             CCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCC
Confidence            67777766654432   13445666666666654332     12334566666666666644332  2356666666666


Q ss_pred             CCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch
Q 042875          262 SKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ  340 (432)
Q Consensus       262 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  340 (432)
                      .+.+.  ..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+.. ++.. +..+++|++|++++|.+..+|.
T Consensus       237 ~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~~l~~L~~L~L~~n~l~~~~~  312 (390)
T 3o6n_A          237 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLLHVER  312 (390)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECS-SSCCTTCCEEECCSSCCCCCGG
T ss_pred             CCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcc-cCCCCCCCEEECCCCcceecCc
Confidence            55432  2345556666666666655532 4445555555555555554322 2221 2244555555555555555555


Q ss_pred             hhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCC
Q 042875          341 EIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       341 ~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~  381 (432)
                      .+..+++|+.|++++|.++.++  +..+++|++|++++|++
T Consensus       313 ~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          313 NQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             GHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred             cccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCc
Confidence            5555555555555555555443  34455555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=5.1e-29  Score=233.75  Aligned_cols=304  Identities=16%  Similarity=0.099  Sum_probs=246.8

Q ss_pred             chhhhcceeecCCCCCCCCCCCC--CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC-CC
Q 042875           57 YLPEKLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS-NL  133 (432)
Q Consensus        57 ~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~  133 (432)
                      .++ +++.|+++++.++.+|...  .+++|++|++++|.++.+       .+..+..+++|++|++++|......+. +.
T Consensus        43 ~l~-~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  114 (390)
T 3o6n_A           43 TLN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ  114 (390)
T ss_dssp             GGC-CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccC-CceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-------ChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence            344 8999999999999888864  789999999999998753       334688999999999999877665554 56


Q ss_pred             CCCCceEEEecCcccccccCCCCCCccEEEeccccccccccc-ccCCCCCCEEeeccccccccccchhcCCCCccEEEec
Q 042875          134 HFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVN  212 (432)
Q Consensus       134 ~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  212 (432)
                      .+++|++|++++|.+.                     .+|.. +..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus       115 ~l~~L~~L~L~~n~l~---------------------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A          115 NVPLLTVLVLERNDLS---------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             TCTTCCEEECCSSCCC---------------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             CCCCCCEEECCCCccC---------------------cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            7889999999887644                     23333 5778999999999998877777778899999999999


Q ss_pred             CccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc
Q 042875          213 GCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS  292 (432)
Q Consensus       213 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  292 (432)
                      +|.+...   .+..+++|+++++++|.++.++    ..++++.|++++|.+... +.  ...++|+.|++++|.+... .
T Consensus       174 ~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~  242 (390)
T 3o6n_A          174 SNRLTHV---DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-A  242 (390)
T ss_dssp             SSCCSBC---CGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-G
T ss_pred             CCcCCcc---ccccccccceeecccccccccC----CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-H
Confidence            9876553   2567889999999999887543    346899999999876543 33  2357899999999998865 5


Q ss_pred             cccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCC
Q 042875          293 SVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLC  372 (432)
Q Consensus       293 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~  372 (432)
                      .+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+..++..+..+++|++|++++|+++.+|..+..+++|+
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~  321 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE  321 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred             HHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence            678899999999999986554343 4668899999999999999988877889999999999999999988888999999


Q ss_pred             eeeccCCCCCcccCCCCCCccEEeccCCC
Q 042875          373 SLDLRRCNMLQSLPALPLCLKYLHLTGCN  401 (432)
Q Consensus       373 ~L~l~~~~~~~~~~~~~~~L~~L~l~~c~  401 (432)
                      +|++++|++...-...+++|++|++.+|+
T Consensus       322 ~L~L~~N~i~~~~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          322 NLYLDHNSIVTLKLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             EEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred             EEECCCCccceeCchhhccCCEEEcCCCC
Confidence            99999999765544667899999999975

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.3e-28  Score=243.30  Aligned_cols=299  Identities=14%  Similarity=0.097  Sum_probs=164.7

Q ss_pred             hcceeecCCCCCCCCCCCC--CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC-CCCCCC
Q 042875           61 KLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS-NLHFVC  137 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~  137 (432)
                      +++.++++++.++.+|...  .+++|++|++++|.++.+       .+..|+.+++|+.|++++|.+.+..+. +..+++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  124 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  124 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-------ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence            4444445444444444432  444555555555544432       222344455555555555443332222 233445


Q ss_pred             ceEEEecCcccccccC---CCCCCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecC
Q 042875          138 PVTINFSYCVTLIEFP---QISGKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNG  213 (432)
Q Consensus       138 L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  213 (432)
                      |++|++++|.+....+   ..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+...   .+..+++|+.|++++
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY  201 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCS
T ss_pred             CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhccc
Confidence            5555554444331111   11223334444444333333 3566677777777777765443   144466777777777


Q ss_pred             ccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc-cCc
Q 042875          214 CLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ-LPS  292 (432)
Q Consensus       214 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~  292 (432)
                      |.+.+     +....+|++|++++|.++.++...  .++|+.|++++|.+.+  +..+..+++|+.|++++|.+.. .+.
T Consensus       202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~  272 (597)
T 3oja_B          202 NLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH  272 (597)
T ss_dssp             SCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             Ccccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence            64432     223456777777777776554322  3567777777776554  2446666777777777777663 355


Q ss_pred             cccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCC
Q 042875          293 SVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLC  372 (432)
Q Consensus       293 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~  372 (432)
                      .++.+++|+.|++++|.+.+ ++.. +..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.++  +..+++|+
T Consensus       273 ~~~~l~~L~~L~Ls~N~l~~-l~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~  348 (597)
T 3oja_B          273 PFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLK  348 (597)
T ss_dssp             GGTTCSSCCEEECTTSCCCE-EECS-SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCS
T ss_pred             HhcCccCCCEEECCCCCCCC-CCcc-cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCC
Confidence            66667777777777766433 2322 23456677777777777666666666677777777777766554  45566777


Q ss_pred             eeeccCCCCC
Q 042875          373 SLDLRRCNML  382 (432)
Q Consensus       373 ~L~l~~~~~~  382 (432)
                      +|++++|++.
T Consensus       349 ~L~l~~N~~~  358 (597)
T 3oja_B          349 NLTLSHNDWD  358 (597)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEeeCCCCC
Confidence            7777776653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=1.5e-27  Score=238.30  Aligned_cols=358  Identities=21%  Similarity=0.196  Sum_probs=266.8

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCc-cccchhhhcceeecCCCCCCCCCCCC--CCCCce
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPN-GLEYLPEKLRYLHWDTYPLRILPSNF--KPKNLV   85 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~l~~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~   85 (432)
                      .||+++|.+..+.+.+|.++++|++|+|++|++.+       +|. .+..++ +|++|++++|.++.++...  ++++|+
T Consensus        80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-------l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~  151 (635)
T 4g8a_A           80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-------LALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLK  151 (635)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-------ECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-------CCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccC
Confidence            36779999999999999999999999999999984       454 467786 9999999999999888753  899999


Q ss_pred             eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC----------------------------CCCCCC
Q 042875           86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS----------------------------NLHFVC  137 (432)
Q Consensus        86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------------------------~~~~~~  137 (432)
                      +|++++|.++.+   .   +|..++.+++|++|++++|.+.+..+.                            ......
T Consensus       152 ~L~Ls~N~l~~~---~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~  225 (635)
T 4g8a_A          152 ELNVAHNLIQSF---K---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR  225 (635)
T ss_dssp             EEECCSSCCCCC---C---CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred             eeccccCccccC---C---CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchh
Confidence            999999998753   2   566788999999999998865432110                            011112


Q ss_pred             ceEEEecCcccccc------------------------------------------------------------------
Q 042875          138 PVTINFSYCVTLIE------------------------------------------------------------------  151 (432)
Q Consensus       138 L~~L~l~~~~~~~~------------------------------------------------------------------  151 (432)
                      ++.+++.++.....                                                                  
T Consensus       226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~  305 (635)
T 4g8a_A          226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL  305 (635)
T ss_dssp             EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred             hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence            23333332210000                                                                  


Q ss_pred             ---------------c--CCCCCCccEEEeccccccccc--------------------ccccCCCCCCEEeeccccccc
Q 042875          152 ---------------F--PQISGKITRLYLDQSAIEEVP--------------------SSIECLTDLEVLDLRDCKRLK  194 (432)
Q Consensus       152 ---------------~--~~~~~~L~~L~l~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~  194 (432)
                                     .  .....+++.|++.++.+..++                    .....+++|+.++++.|....
T Consensus       306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  385 (635)
T 4g8a_A          306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF  385 (635)
T ss_dssp             TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred             cccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence                           0  001123455555554433221                    122357788999998887643


Q ss_pred             --cccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccccc--CcccCCCCCccEEeecCCCCCCccccc
Q 042875          195 --RISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITEL--PSSFENLPGLEELFVSDCSKLDKLPDN  270 (432)
Q Consensus       195 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~  270 (432)
                        ..+..+....+|+.+++..+.... .+..+..+++|+.+++..+.....  ...+..+++++.++++.|......+..
T Consensus       386 ~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~  464 (635)
T 4g8a_A          386 KGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI  464 (635)
T ss_dssp             EEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             ccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccc
Confidence              345556778899999998875443 344567889999999988776632  345778899999999999888888888


Q ss_pred             cCCccccccccccccccc--ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCC-chhhhcCCC
Q 042875          271 IGNLESLRHISAAGSAIS--QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEI-PQEIAYLSS  347 (432)
Q Consensus       271 ~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~  347 (432)
                      +..++.++.|++++|.+.  ..+..+..+++|++|++++|.+.+. +...+.++++|++|++++|+++.+ +..+..+++
T Consensus       465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l-~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  543 (635)
T 4g8a_A          465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  543 (635)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred             cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc-ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence            889999999999999754  4677889999999999999985544 444567899999999999999995 456889999


Q ss_pred             CCEEEeeCCCCccc-ChhccCC-CCCCeeeccCCCCC
Q 042875          348 LKSLDLRGNNFESL-PASIKQL-SRLCSLDLRRCNML  382 (432)
Q Consensus       348 L~~L~l~~n~l~~l-~~~~~~l-~~L~~L~l~~~~~~  382 (432)
                      |++|++++|+++.+ |..+..+ ++|++|++++|++.
T Consensus       544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            99999999999955 5567777 68999999999863

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=8.1e-28  Score=237.61  Aligned_cols=302  Identities=15%  Similarity=0.149  Sum_probs=186.4

Q ss_pred             cccceeeeeccccccccccccccCCcc-ccchhhhcceeecCCCCCCCCCC-C-CCCCCceeeeeccccccccCCCcccc
Q 042875           28 MSNLRLLKFYVPKFYEIERFPMQLPNG-LEYLPEKLRYLHWDTYPLRILPS-N-FKPKNLVELNLRFSKVEQPWEGEKAC  104 (432)
Q Consensus        28 l~~L~~L~l~~~~i~~~~~~~~~~~~~-l~~l~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~l~~~~~~~~~~  104 (432)
                      +++++.++++++.+.       .+|.. +..++ +|++|++++|.++.++. . ..+++|++|++++|.++.+       
T Consensus        50 l~~l~~l~l~~~~l~-------~lp~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------  114 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-------KLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-------  114 (597)
T ss_dssp             GCCCSEEEESSCEES-------EECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-------
T ss_pred             CCCceEEEeeCCCCC-------CcCHHHHccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-------
Confidence            445555555555554       23332 23343 56666666655554443 2 2555566666666555432       


Q ss_pred             cCCcccCcccCceEeccCCccCCcCCC-CCCCCCceEEEecCcccccccCC---CCCCccEEEecccccccccccccCCC
Q 042875          105 VPSSIQNFKYLSALSFEGCKSLRSFPS-NLHFVCPVTINFSYCVTLIEFPQ---ISGKITRLYLDQSAIEEVPSSIECLT  180 (432)
Q Consensus       105 ~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~  180 (432)
                      .|..++.+++|++|++++|.+....+. +..+++|++|++++|.+....+.   .+.+|+.|++.+|.+..++  +..++
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~  192 (597)
T 3oja_B          115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIP  192 (597)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCT
T ss_pred             CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhh
Confidence            233345556666666665544322222 24455666666666555443332   2345566666666555543  34466


Q ss_pred             CCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecC
Q 042875          181 DLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSD  260 (432)
Q Consensus       181 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~  260 (432)
                      +|+.|++++|.+.+     +...+.|+.|++++|.+....+ .  ..++|+.|++++|.++.. ..+..+++|+.|++++
T Consensus       193 ~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~  263 (597)
T 3oja_B          193 SLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSY  263 (597)
T ss_dssp             TCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCS
T ss_pred             hhhhhhcccCcccc-----ccCCchhheeeccCCccccccc-c--cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCC
Confidence            77777777765432     2234567777777765543221 1  135677777777777754 4567777888888888


Q ss_pred             CCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch
Q 042875          261 CSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ  340 (432)
Q Consensus       261 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  340 (432)
                      |.+.+..|..+..+++|+.|++++|.+..++..+..+++|+.|++++|.+. .++.. +..+++|+.|++++|.+..++ 
T Consensus       264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~-~~~l~~L~~L~L~~N~l~~~~-  340 (597)
T 3oja_B          264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERN-QPQFDRLENLYLDHNSIVTLK-  340 (597)
T ss_dssp             SCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGG-HHHHTTCSEEECCSSCCCCCC-
T ss_pred             CccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcc-cccCCCCCEEECCCCCCCCcC-
Confidence            877777777777788888888888887777777777788888888888754 45544 346788888888888888765 


Q ss_pred             hhhcCCCCCEEEeeCCCCc
Q 042875          341 EIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       341 ~~~~~~~L~~L~l~~n~l~  359 (432)
                       +..+++|+.|++++|.+.
T Consensus       341 -~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          341 -LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             -CCTTCCCSEEECCSSCEE
T ss_pred             -hhhcCCCCEEEeeCCCCC
Confidence             567788888999888876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=3.8e-31  Score=254.04  Aligned_cols=370  Identities=17%  Similarity=0.145  Sum_probs=221.3

Q ss_pred             eccCCceecccCchh-hcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCC--CCC-CCC---
Q 042875           10 LDLSKIKCINLDPGA-FTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILP--SNF-KPK---   82 (432)
Q Consensus        10 l~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~--~~~-~~~---   82 (432)
                      +|++++.+.+..... +..+++|++|++++|++.+.  ....++..+..++ +|++|++++|.++...  ... .+.   
T Consensus         8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~   84 (461)
T 1z7x_W            8 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--RCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPS   84 (461)
T ss_dssp             EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH--HHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred             hhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH--HHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence            455555544333232 56677777777777766531  1112344445554 6777777666654211  111 222   


Q ss_pred             -CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC----C--CCCCCCceEEEecCcccccccCCC
Q 042875           83 -NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP----S--NLHFVCPVTINFSYCVTLIEFPQI  155 (432)
Q Consensus        83 -~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~--~~~~~~L~~L~l~~~~~~~~~~~~  155 (432)
                       +|++|++++|.++......   ++..+..+++|++|++++|......+    .  ....++|++|++++|.+.....  
T Consensus        85 ~~L~~L~L~~n~i~~~~~~~---l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--  159 (461)
T 1z7x_W           85 CKIQKLSLQNCCLTGAGCGV---LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--  159 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHH---HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred             CceeEEEccCCCCCHHHHHH---HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence             5666666666665432222   45556666666666666665432211    0  1113345555555554332110  


Q ss_pred             CCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhc-----CCCCccEEEecCccCccc----chHhhhc
Q 042875          156 SGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFC-----KLRSLVDLFVNGCLNLER----FPEILEK  226 (432)
Q Consensus       156 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~  226 (432)
                                    ..++..+..+++|++|++++|.+....+..+.     ..++|+.|++++|.+...    ++..+..
T Consensus       160 --------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  225 (461)
T 1z7x_W          160 --------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS  225 (461)
T ss_dssp             --------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred             --------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh
Confidence                          12345566678888888888876543333232     255888888888876653    4666777


Q ss_pred             CCCCCeeeecccccccc------CcccCCCCCccEEeecCCCCCCc----cccccCCcccccccccccccccc-----cC
Q 042875          227 MEHLKRINLDGTAITEL------PSSFENLPGLEELFVSDCSKLDK----LPDNIGNLESLRHISAAGSAISQ-----LP  291 (432)
Q Consensus       227 l~~L~~L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----~~  291 (432)
                      +++|++|++++|.++..      +.....+++|++|++++|.+...    ++..+..+++|++|++++|.+..     +.
T Consensus       226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  305 (461)
T 1z7x_W          226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  305 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence            88888888888877632      22234578888888888866543    45556667888888888887752     11


Q ss_pred             ccc-cCCCCCcEEeccCCCCCCCCch---hhhcCCCCccEEEeeccCCCC-Cchhhhc-----CCCCCEEEeeCCCCc--
Q 042875          292 SSV-ADSNALLILDFSRCKGLVSLPR---SLLLGLSSLGLLYIMNCAVME-IPQEIAY-----LSSLKSLDLRGNNFE--  359 (432)
Q Consensus       292 ~~~-~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-----~~~L~~L~l~~n~l~--  359 (432)
                      ..+ ...++|++|++++|.+......   ..+..+++|++|++++|.+.+ .+..+..     .++|++|++++|.++  
T Consensus       306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~  385 (461)
T 1z7x_W          306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  385 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh
Confidence            111 1235888888888875544221   123356788888888888776 2333322     678888888888887  


Q ss_pred             ---ccChhccCCCCCCeeeccCCCCCcc--------cCCCCCCccEEeccCCC
Q 042875          360 ---SLPASIKQLSRLCSLDLRRCNMLQS--------LPALPLCLKYLHLTGCN  401 (432)
Q Consensus       360 ---~l~~~~~~l~~L~~L~l~~~~~~~~--------~~~~~~~L~~L~l~~c~  401 (432)
                         .+|..+..+++|++|++++|++...        ++.....|+.|.+.++.
T Consensus       386 ~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          386 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             hHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence               5677777888888888888876442        33344567777776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=1.4e-27  Score=216.54  Aligned_cols=247  Identities=20%  Similarity=0.281  Sum_probs=194.4

Q ss_pred             CccEEEecccccc---cccccccCCCCCCEEeecc-ccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCee
Q 042875          158 KITRLYLDQSAIE---EVPSSIECLTDLEVLDLRD-CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRI  233 (432)
Q Consensus       158 ~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  233 (432)
                      +++.|++.++.+.   .+|..+..+++|++|++++ +.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            3444555554443   4677788888888888885 77777788888888888888888888877788888888888888


Q ss_pred             eecccccc-ccCcccCCCCCccEEeecCCCCCCccccccCCcc-ccccccccccccc-ccCccccCCCCCcEEeccCCCC
Q 042875          234 NLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLE-SLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKG  310 (432)
Q Consensus       234 ~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~  310 (432)
                      ++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+. ..+..+..++ |++|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            88888888 6777888888889999888888777888888877 8888888888887 6677777776 88888888876


Q ss_pred             CCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccCCC-
Q 042875          311 LVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPAL-  388 (432)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-  388 (432)
                      .+..+. .+..+++|+.|++++|.++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|.. 
T Consensus       210 ~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          210 EGDASV-LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGG-GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             cCcCCH-HHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            554443 356788899999988888875555778888999999999888 78888888899999999998887777743 


Q ss_pred             -CCCccEEeccCCCCcccc
Q 042875          389 -PLCLKYLHLTGCNMLRSL  406 (432)
Q Consensus       389 -~~~L~~L~l~~c~~l~~l  406 (432)
                       +++|+.+++.+|+.+...
T Consensus       289 ~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TGGGSCGGGTCSSSEEEST
T ss_pred             cccccChHHhcCCCCccCC
Confidence             456777777777655443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=4.2e-30  Score=246.80  Aligned_cols=369  Identities=18%  Similarity=0.139  Sum_probs=260.0

Q ss_pred             cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCC-----CCCCC-CCCCceeeeeccccccccCCCc
Q 042875           28 MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRI-----LPSNF-KPKNLVELNLRFSKVEQPWEGE  101 (432)
Q Consensus        28 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~l~~~~~~~  101 (432)
                      .++|++||++++++.+.     .....+..++ +|++|++++|.++.     ++..+ .+++|++|++++|.+++.....
T Consensus         2 ~~~l~~L~Ls~~~l~~~-----~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~   75 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDA-----RWAELLPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC   75 (461)
T ss_dssp             CEEEEEEEEESCCCCHH-----HHHHHHHHHT-TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CccceehhhhhcccCch-----hHHHHHhhcC-CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence            46889999999988751     2222356676 89999999998763     33333 6788999999998876421111


Q ss_pred             ccccCCcccCcc-cCceEeccCCccCC----cCC-CCCCCCCceEEEecCcccccccCCCCCCccEEEeccccccccccc
Q 042875          102 KACVPSSIQNFK-YLSALSFEGCKSLR----SFP-SNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSS  175 (432)
Q Consensus       102 ~~~~~~~~~~l~-~L~~L~l~~~~~~~----~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  175 (432)
                         +...+.... +|++|++++|....    .++ .+..+++|++|++++|.+....+                ..+...
T Consensus        76 ---l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~----------------~~l~~~  136 (461)
T 1z7x_W           76 ---VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL----------------QLLCEG  136 (461)
T ss_dssp             ---HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH----------------HHHHHH
T ss_pred             ---HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH----------------HHHHHH
Confidence               111122211 68889998887653    233 45567888888888876542211                111122


Q ss_pred             -ccCCCCCCEEeecccccccc----ccchhcCCCCccEEEecCccCcccchHhhh-----cCCCCCeeeeccccccc---
Q 042875          176 -IECLTDLEVLDLRDCKRLKR----ISTRFCKLRSLVDLFVNGCLNLERFPEILE-----KMEHLKRINLDGTAITE---  242 (432)
Q Consensus       176 -~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~---  242 (432)
                       ....++|++|++++|.+...    ++..+..+++|+.|++++|.+....+..+.     ..++|++|++++|.++.   
T Consensus       137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  216 (461)
T 1z7x_W          137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC  216 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred             HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence             22356899999999987653    456667789999999999886654333333     36799999999999884   


Q ss_pred             --cCcccCCCCCccEEeecCCCCCCcc-----ccccCCcccccccccccccccc-----cCccccCCCCCcEEeccCCCC
Q 042875          243 --LPSSFENLPGLEELFVSDCSKLDKL-----PDNIGNLESLRHISAAGSAISQ-----LPSSVADSNALLILDFSRCKG  310 (432)
Q Consensus       243 --~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~  310 (432)
                        ++..+..+++|++|++++|.+.+..     +.....+++|++|++++|.+..     ++..+..+++|++|++++|.+
T Consensus       217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence              5667788999999999999765432     2223358999999999998874     667778899999999999975


Q ss_pred             CCCCchh----hhcCCCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCccc-Chhc----cC-CCCCCeee
Q 042875          311 LVSLPRS----LLLGLSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFESL-PASI----KQ-LSRLCSLD  375 (432)
Q Consensus       311 ~~~~~~~----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~l-~~~~----~~-l~~L~~L~  375 (432)
                      .+..+..    .....++|+.|++++|.++.     ++..+..+++|++|++++|.++.. +..+    .. .++|++|+
T Consensus       297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW  376 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence            4432222    22234699999999999986     466678889999999999998832 2323    22 77999999


Q ss_pred             ccCCCCCc----ccCC---CCCCccEEeccCCCCccc---------cCCCCCccceecccccc
Q 042875          376 LRRCNMLQ----SLPA---LPLCLKYLHLTGCNMLRS---------LPELPLCLQELDATNCN  422 (432)
Q Consensus       376 l~~~~~~~----~~~~---~~~~L~~L~l~~c~~l~~---------l~~~~~~L~~L~l~~c~  422 (432)
                      +++|.+..    .++.   .+++|++|++++|+ ++.         ++.....|++|++.++.
T Consensus       377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             CCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence            99998764    5553   35789999999985 332         34445568888887753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=5.4e-26  Score=208.15  Aligned_cols=285  Identities=18%  Similarity=0.231  Sum_probs=173.2

Q ss_pred             hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCce
Q 042875           61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPV  139 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~  139 (432)
                      +++.++++++.++.+|.... +++++|++++|.++.+       .+..+..+++|++|++++|......+ .+..+++|+
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEI-------KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE  103 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCB-------CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEe-------ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence            67777777777776665442 5677777777777643       22346777777777777766555434 445567777


Q ss_pred             EEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc-
Q 042875          140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE-  218 (432)
Q Consensus       140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-  218 (432)
                      +|++++|.+. .++                    ..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. 
T Consensus       104 ~L~Ls~n~l~-~l~--------------------~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  160 (330)
T 1xku_A          104 RLYLSKNQLK-ELP--------------------EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS  160 (330)
T ss_dssp             EEECCSSCCS-BCC--------------------SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred             EEECCCCcCC-ccC--------------------hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc
Confidence            7777766543 222                    2221  355555555555444444445555556666665554432 


Q ss_pred             -cchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccccC
Q 042875          219 -RFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVAD  296 (432)
Q Consensus       219 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~  296 (432)
                       ..+..+..+++|++|++++|.++.+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..++ ..+..
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          161 GIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             CcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence             334455566666666666666665554432  56777777776665555556666677777777777666443 35666


Q ss_pred             CCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-hh------cCCCCCEEEeeCCCCc---ccChhcc
Q 042875          297 SNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IA------YLSSLKSLDLRGNNFE---SLPASIK  366 (432)
Q Consensus       297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~------~~~~L~~L~l~~n~l~---~l~~~~~  366 (432)
                      +++|++|++++|.+. .++.. +..+++|+.|++++|.++.++.. +.      ..+.++.|++.+|.+.   ..|..+.
T Consensus       239 l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~  316 (330)
T 1xku_A          239 TPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  316 (330)
T ss_dssp             STTCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCEEECCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence            677777777777644 44443 34567777777777777775432 21      2467888999998876   2345677


Q ss_pred             CCCCCCeeeccCCC
Q 042875          367 QLSRLCSLDLRRCN  380 (432)
Q Consensus       367 ~l~~L~~L~l~~~~  380 (432)
                      .+++++.+++++|+
T Consensus       317 ~~~~l~~l~L~~N~  330 (330)
T 1xku_A          317 CVYVRAAVQLGNYK  330 (330)
T ss_dssp             TCCCGGGEEC----
T ss_pred             cccceeEEEecccC
Confidence            78888889888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=1.9e-26  Score=211.27  Aligned_cols=284  Identities=15%  Similarity=0.194  Sum_probs=165.5

Q ss_pred             hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCce
Q 042875           61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPV  139 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~  139 (432)
                      +++.++++++.++.+|..+ .++|++|++++|.++.+       .+..+..+++|++|++++|......+ .+..+++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  105 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISEL-------RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ  105 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCcc-------CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence            5677777777776666554 25677777777776642       23456777777777777766554434 345566777


Q ss_pred             EEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc-
Q 042875          140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE-  218 (432)
Q Consensus       140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-  218 (432)
                      +|++++|.+. .++.                    .+.  ++|++|++++|.+....+..+..+++|+.|++++|.+.. 
T Consensus       106 ~L~L~~n~l~-~l~~--------------------~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  162 (332)
T 2ft3_A          106 KLYISKNHLV-EIPP--------------------NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS  162 (332)
T ss_dssp             EEECCSSCCC-SCCS--------------------SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred             EEECCCCcCC-ccCc--------------------ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence            7777666544 2222                    211  344444444444433333334445555555555544421 


Q ss_pred             -cchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccC
Q 042875          219 -RFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVAD  296 (432)
Q Consensus       219 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~  296 (432)
                       ..+..+..+ +|++|++++|.++.+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+..++. .+..
T Consensus       163 ~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          163 GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             CCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence             233334444 56666666666665554332  566666666666655555556666777777777776664443 5666


Q ss_pred             CCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-hhc------CCCCCEEEeeCCCCc--c-cChhcc
Q 042875          297 SNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAY------LSSLKSLDLRGNNFE--S-LPASIK  366 (432)
Q Consensus       297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~------~~~L~~L~l~~n~l~--~-l~~~~~  366 (432)
                      +++|++|++++|.+. .+|.. +..+++|+.|++++|.++.++.. +..      .++++.|++++|.+.  . .|..+.
T Consensus       240 l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~  317 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR  317 (332)
T ss_dssp             CTTCCEEECCSSCCC-BCCTT-GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCEEECCCCcCe-ecChh-hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence            677777777776644 44443 34567777777777777764432 221      467888888888776  3 345677


Q ss_pred             CCCCCCeeeccCCC
Q 042875          367 QLSRLCSLDLRRCN  380 (432)
Q Consensus       367 ~l~~L~~L~l~~~~  380 (432)
                      .+++|+.+++++|+
T Consensus       318 ~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          318 CVTDRLAIQFGNYK  331 (332)
T ss_dssp             TBCCSTTEEC----
T ss_pred             ccchhhhhhccccc
Confidence            78888888888775

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2.4e-27  Score=215.00  Aligned_cols=210  Identities=20%  Similarity=0.266  Sum_probs=139.4

Q ss_pred             cccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-ccCcccCCCC
Q 042875          173 PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLP  251 (432)
Q Consensus       173 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~  251 (432)
                      |..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..++
T Consensus        94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  173 (313)
T 1ogq_A           94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence            344444555555555555554455555555555555555555555455555555556666666665555 4555555555


Q ss_pred             -CccEEeecCCCCCCccccccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875          252 -GLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY  329 (432)
Q Consensus       252 -~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (432)
                       +|+.|++++|.+.+.+|..+..+. |++|++++|.+. ..+..+..+++|+.|++++|.+....+.  +..+++|++|+
T Consensus       174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~  250 (313)
T 1ogq_A          174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLD  250 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEE
T ss_pred             hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEE
Confidence             566666666655555555555554 666666666665 4445566677777777777765544443  45678899999


Q ss_pred             eeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccC
Q 042875          330 IMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLP  386 (432)
Q Consensus       330 l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~  386 (432)
                      +++|.++. +|..+..+++|+.|++++|+++ .+|.. ..+++|+.+++.+|+.....|
T Consensus       251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            99999984 8888999999999999999998 66665 889999999999998554433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=1.5e-25  Score=205.25  Aligned_cols=282  Identities=15%  Similarity=0.148  Sum_probs=217.9

Q ss_pred             CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCCCCCccE
Q 042875           83 NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQISGKITR  161 (432)
Q Consensus        83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~  161 (432)
                      +++.++++++.++.        +|..+.  ++++.|++++|...+..+ .+..+++|++|++++|.+.            
T Consensus        32 ~l~~l~~~~~~l~~--------lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------   89 (330)
T 1xku_A           32 HLRVVQCSDLGLEK--------VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------------   89 (330)
T ss_dssp             ETTEEECTTSCCCS--------CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC------------
T ss_pred             CCeEEEecCCCccc--------cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC------------
Confidence            68888888888765        444332  578888888876655433 4566788888888777654            


Q ss_pred             EEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875          162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT  241 (432)
Q Consensus       162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  241 (432)
                              ...|..+..+++|++|++++|.+. .++..+.  ++|+.|++++|.+....+..+..+++|++|++++|.++
T Consensus        90 --------~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A           90 --------KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             --------CBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             --------eeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence                    223567888999999999998765 4554443  79999999999888777778999999999999999987


Q ss_pred             ---ccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCCCCchh
Q 042875          242 ---ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLVSLPRS  317 (432)
Q Consensus       242 ---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~  317 (432)
                         ..+..+..+++|+.|++++|.+.. +|..+.  ++|++|++++|.+..+ +..+..+++|++|++++|.+.+..+ .
T Consensus       159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~  234 (330)
T 1xku_A          159 SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-G  234 (330)
T ss_dssp             GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-T
T ss_pred             ccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-h
Confidence               345678889999999999987654 554443  8999999999999855 5778899999999999998655333 3


Q ss_pred             hhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChh-cc------CCCCCCeeeccCCCCCc--ccCC-
Q 042875          318 LLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS-IK------QLSRLCSLDLRRCNMLQ--SLPA-  387 (432)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-~~------~l~~L~~L~l~~~~~~~--~~~~-  387 (432)
                      .+..+++|+.|++++|.+..+|..+..+++|++|++++|.++.++.. +.      ....++.+++.+|++..  ..|. 
T Consensus       235 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~  314 (330)
T 1xku_A          235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST  314 (330)
T ss_dssp             TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred             hccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence            45678999999999999999999999999999999999999977643 22      34788999999999743  2222 


Q ss_pred             --CCCCccEEeccCCC
Q 042875          388 --LPLCLKYLHLTGCN  401 (432)
Q Consensus       388 --~~~~L~~L~l~~c~  401 (432)
                        ....++.+++.+|+
T Consensus       315 f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          315 FRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GTTCCCGGGEEC----
T ss_pred             cccccceeEEEecccC
Confidence              23568888888763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=9.2e-29  Score=245.01  Aligned_cols=364  Identities=15%  Similarity=0.104  Sum_probs=216.4

Q ss_pred             cccccceeeeeccccccccccccccCCccccc-hhhhcceeecCCCC-CC--CCCCCC-CCCCceeeeeccccccccCCC
Q 042875           26 TNMSNLRLLKFYVPKFYEIERFPMQLPNGLEY-LPEKLRYLHWDTYP-LR--ILPSNF-KPKNLVELNLRFSKVEQPWEG  100 (432)
Q Consensus        26 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~-l~~~L~~L~l~~~~-~~--~l~~~~-~~~~L~~L~l~~~~l~~~~~~  100 (432)
                      ..+++|++|++++|.+.+      ..+..+.. ++.+|++|++++|. +.  .++... ++++|++|++++|.+++....
T Consensus       109 ~~~~~L~~L~L~~~~i~~------~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~  182 (592)
T 3ogk_B          109 NNLRQLKSVHFRRMIVSD------LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK  182 (592)
T ss_dssp             HHCTTCCEEEEESCBCCH------HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH
T ss_pred             hhCCCCCeEEeeccEecH------HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh
Confidence            378999999999998765      33333433 44349999998875 22  222222 778999999999887643211


Q ss_pred             cccccCCcccCcccCceEeccCCccCC----cCCC-CCCCCCceEEEecCcccccccC---CCCCCccEEEeccccc---
Q 042875          101 EKACVPSSIQNFKYLSALSFEGCKSLR----SFPS-NLHFVCPVTINFSYCVTLIEFP---QISGKITRLYLDQSAI---  169 (432)
Q Consensus       101 ~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~-~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~---  169 (432)
                      .   ++.....+++|++|+++++....    .++. +..+++|+.|++++|.... ++   ...++|+.|.+.....   
T Consensus       183 ~---l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~  258 (592)
T 3ogk_B          183 W---LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG  258 (592)
T ss_dssp             H---HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT
T ss_pred             H---HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc
Confidence            1   23334677888889888876641    2222 3357888899888876553 22   2445777777764221   


Q ss_pred             -ccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCccc-chHhhhcCCCCCeeeecccccc--ccCc
Q 042875          170 -EEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER-FPEILEKMEHLKRINLDGTAIT--ELPS  245 (432)
Q Consensus       170 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~--~~~~  245 (432)
                       ...+..+..+++|+.++++++ ....++..+..+++|++|++++|.+.+. +...+..+++|++|+++ +.+.  .++.
T Consensus       259 ~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~  336 (592)
T 3ogk_B          259 MPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEV  336 (592)
T ss_dssp             CTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHH
T ss_pred             hHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHH
Confidence             223345666777777777764 2344555666677788888877764333 22345677777777777 3333  3333


Q ss_pred             ccCCCCCccEEeecC----------CCCCCc--cccccCCccccccccccccccc-ccCcccc-CCCCCcEEeccC---C
Q 042875          246 SFENLPGLEELFVSD----------CSKLDK--LPDNIGNLESLRHISAAGSAIS-QLPSSVA-DSNALLILDFSR---C  308 (432)
Q Consensus       246 ~~~~l~~L~~L~l~~----------~~~~~~--~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~-~~~~L~~L~l~~---~  308 (432)
                      ....+++|++|++++          |.....  +......+++|++|+++.+.+. .....+. .+++|++|++++   +
T Consensus       337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~  416 (592)
T 3ogk_B          337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE  416 (592)
T ss_dssp             HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred             HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence            345567777777773          333221  1122234677777777666665 2222233 367777777753   2


Q ss_pred             CCCCCCc-----hhhhcCCCCccEEEeeccC--CCC-Cchhh-hcCCCCCEEEeeCCCCc--ccChhccCCCCCCeeecc
Q 042875          309 KGLVSLP-----RSLLLGLSSLGLLYIMNCA--VME-IPQEI-AYLSSLKSLDLRGNNFE--SLPASIKQLSRLCSLDLR  377 (432)
Q Consensus       309 ~~~~~~~-----~~~~~~~~~L~~L~l~~~~--~~~-~~~~~-~~~~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~  377 (432)
                      ...+..|     ...+.++++|+.|++++|.  ++. .+..+ ..+++|+.|++++|+++  .++..+..+++|++|+++
T Consensus       417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred             ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence            2233221     1123456777777776543  333 22223 34677777777777776  344555667777777777


Q ss_pred             CCCCCcc-cC---CCCCCccEEeccCCC
Q 042875          378 RCNMLQS-LP---ALPLCLKYLHLTGCN  401 (432)
Q Consensus       378 ~~~~~~~-~~---~~~~~L~~L~l~~c~  401 (432)
                      +|++... ++   ..+++|++|++++|.
T Consensus       497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          497 GCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             SCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            7774322 11   234577777777775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=1.2e-25  Score=206.09  Aligned_cols=281  Identities=15%  Similarity=0.135  Sum_probs=215.9

Q ss_pred             CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCCCCCccE
Q 042875           83 NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQISGKITR  161 (432)
Q Consensus        83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~  161 (432)
                      +++.++++++.++.        +|..+  .++++.|++++|......+ .+..+++|++|++++|.+.            
T Consensus        34 ~l~~l~~~~~~l~~--------ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------   91 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA--------VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS------------   91 (332)
T ss_dssp             ETTEEECCSSCCSS--------CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------
T ss_pred             cCCEEECCCCCccc--------cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC------------
Confidence            68888888888765        45444  2678888888876554434 4566777888877777544            


Q ss_pred             EEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875          162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT  241 (432)
Q Consensus       162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  241 (432)
                              ...|..+..+++|++|++++|.+. .+|..+.  ++|++|++++|.+....+..+..+++|++|++++|.++
T Consensus        92 --------~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A           92 --------KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             --------EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             --------ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence                    223567888999999999998765 4554443  89999999999887666667899999999999999987


Q ss_pred             ---ccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCchh
Q 042875          242 ---ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPRS  317 (432)
Q Consensus       242 ---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~  317 (432)
                         ..+..+..+ +|+.|++++|.+.. +|..+.  ++|++|++++|.+..++ ..+..+++|++|++++|.+... +..
T Consensus       161 ~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~  235 (332)
T 2ft3_A          161 NSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENG  235 (332)
T ss_dssp             GGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTT
T ss_pred             cCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-Chh
Confidence               334556666 99999999997665 555443  79999999999998655 6788999999999999986554 333


Q ss_pred             hhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChh-ccC------CCCCCeeeccCCCCC--cccCC-
Q 042875          318 LLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS-IKQ------LSRLCSLDLRRCNML--QSLPA-  387 (432)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-~~~------l~~L~~L~l~~~~~~--~~~~~-  387 (432)
                      .+..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.++.. +..      ...|+.+++++|+..  +..+. 
T Consensus       236 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~  315 (332)
T 2ft3_A          236 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT  315 (332)
T ss_dssp             GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred             HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence            46688999999999999999999999999999999999999976532 222      467999999999975  33332 


Q ss_pred             --CCCCccEEeccCCC
Q 042875          388 --LPLCLKYLHLTGCN  401 (432)
Q Consensus       388 --~~~~L~~L~l~~c~  401 (432)
                        .+++|+.+++.+|.
T Consensus       316 ~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          316 FRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GTTBCCSTTEEC----
T ss_pred             ccccchhhhhhccccc
Confidence              34678999998875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=7.9e-28  Score=238.32  Aligned_cols=393  Identities=13%  Similarity=0.070  Sum_probs=272.4

Q ss_pred             CchhhcccccceeeeeccccccccccccccCCcccc------------chhhhcceeecCCCCCCCCC-CCC-C-CCC-c
Q 042875           21 DPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLE------------YLPEKLRYLHWDTYPLRILP-SNF-K-PKN-L   84 (432)
Q Consensus        21 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~------------~l~~~L~~L~l~~~~~~~l~-~~~-~-~~~-L   84 (432)
                      .+..+.++++|++|+++++....   ....+|..++            .++ +|++|+++++.++... ..+ . +++ |
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~L  140 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAA---MFNLIPENWGGYVTPWVTEISNNLR-QLKSVHFRRMIVSDLDLDRLAKARADDL  140 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGG---GGTCSCTTSCCBCHHHHHHHHHHCT-TCCEEEEESCBCCHHHHHHHHHHHGGGC
T ss_pred             hHHHHHhCCCCeEEEecCCcchh---hcccccccccccchHHHHHHHhhCC-CCCeEEeeccEecHHHHHHHHHhccccC
Confidence            34567889999999998864321   0012222222            565 8999999988664221 111 2 344 9


Q ss_pred             eeeeecccc-ccccCCCcccccCCcccCcccCceEeccCCccCCc----CC-CCCCCCCceEEEecCcccc----cccC-
Q 042875           85 VELNLRFSK-VEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS----FP-SNLHFVCPVTINFSYCVTL----IEFP-  153 (432)
Q Consensus        85 ~~L~l~~~~-l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~-  153 (432)
                      ++|+++++. ++.   ..   ++.....+++|++|++++|...+.    ++ ....+++|++|+++++...    ..++ 
T Consensus       141 ~~L~L~~~~~~~~---~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~  214 (592)
T 3ogk_B          141 ETLKLDKCSGFTT---DG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET  214 (592)
T ss_dssp             CEEEEESCEEEEH---HH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred             cEEECcCCCCcCH---HH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence            999999876 221   11   333345889999999999876443    22 1234789999999988765    2222 


Q ss_pred             --CCCCCccEEEecccccccccccccCCCCCCEEeecccccc---ccccchhcCCCCccEEEecCccCcccchHhhhcCC
Q 042875          154 --QISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRL---KRISTRFCKLRSLVDLFVNGCLNLERFPEILEKME  228 (432)
Q Consensus       154 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  228 (432)
                        ...++|+.|++.++.+..++..+..+++|+.|+++.+...   ......+..+++|+.+.+.++ ....++..+..++
T Consensus       215 ~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~  293 (592)
T 3ogk_B          215 IARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAA  293 (592)
T ss_dssp             HHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGG
T ss_pred             HHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcC
Confidence              2457899999999988888888888999999999864332   233345677889999999874 3455677778899


Q ss_pred             CCCeeeecccccc--ccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccc-----------cccc--ccCcc
Q 042875          229 HLKRINLDGTAIT--ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAG-----------SAIS--QLPSS  293 (432)
Q Consensus       229 ~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------~~~~--~~~~~  293 (432)
                      +|++|+++++.++  .+...+..+++|++|++.++.....++.....+++|++|++++           +.+.  .+...
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l  373 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL  373 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence            9999999998876  3334468899999999984322223333345678999999993           4554  34444


Q ss_pred             ccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEee----ccCCCCC------chhhhcCCCCCEEEeeCCC--Cc-c
Q 042875          294 VADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM----NCAVMEI------PQEIAYLSSLKSLDLRGNN--FE-S  360 (432)
Q Consensus       294 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~------~~~~~~~~~L~~L~l~~n~--l~-~  360 (432)
                      ...+++|++|+++.+...+.....+...+++|+.|+++    .+.++..      +..+..+++|+.|++++|.  ++ .
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence            56689999999977776555555544458899999997    4456653      3346779999999998754  55 2


Q ss_pred             cChhc-cCCCCCCeeeccCCCCCc-ccC---CCCCCccEEeccCCCCccc--cC---CCCCccceecccccccccc
Q 042875          361 LPASI-KQLSRLCSLDLRRCNMLQ-SLP---ALPLCLKYLHLTGCNMLRS--LP---ELPLCLQELDATNCNRLQS  426 (432)
Q Consensus       361 l~~~~-~~l~~L~~L~l~~~~~~~-~~~---~~~~~L~~L~l~~c~~l~~--l~---~~~~~L~~L~l~~c~~l~~  426 (432)
                      .+..+ ..+++|++|++++|++.. .++   ..+++|++|++++|+ ++.  ++   ..+++|++|++++|+ +++
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence            23333 458999999999998654 222   456899999999998 442  22   257899999999986 654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=8.8e-25  Score=199.34  Aligned_cols=218  Identities=22%  Similarity=0.344  Sum_probs=112.4

Q ss_pred             CCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeec
Q 042875          157 GKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLD  236 (432)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  236 (432)
                      .+++.|++.++.+..+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            3455555555555556666666666666666666554 55555666666666666665544 455556666666666666


Q ss_pred             ccccc-ccCcccCC---------CCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEecc
Q 042875          237 GTAIT-ELPSSFEN---------LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFS  306 (432)
Q Consensus       237 ~~~~~-~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  306 (432)
                      +|... .+|..+..         +++|++|++++|.+. .+|..+..+++|++|++++|.+..++..+..+++|++|+++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence            54333 34433322         445555555554433 44444444555555555555554444444455555555555


Q ss_pred             CCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccC
Q 042875          307 RCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRR  378 (432)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~  378 (432)
                      +|...+.++.. +..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+. .+|..+..+++|+.+.+..
T Consensus       238 ~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          238 GCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             TCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            54444443332 2344445555555544333 4444445555555555554433 4455555555555544443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.1e-24  Score=198.70  Aligned_cols=233  Identities=25%  Similarity=0.351  Sum_probs=167.4

Q ss_pred             cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeeeeccccccccCCCcccccC
Q 042875           28 MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQPWEGEKACVP  106 (432)
Q Consensus        28 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~  106 (432)
                      .++++.|++++|.+.       .+|..++.++ +|++|++++|.++.+|..+ ++++|++|++++|.++.        +|
T Consensus        80 ~~~l~~L~L~~n~l~-------~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~--------lp  143 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-------QFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA--------LP  143 (328)
T ss_dssp             STTCCEEEEESSCCS-------SCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC--------CC
T ss_pred             ccceeEEEccCCCch-------hcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc--------Cc
Confidence            366777777777775       4666666665 7777777777776666654 66777777777776653        56


Q ss_pred             CcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEe
Q 042875          107 SSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD  186 (432)
Q Consensus       107 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  186 (432)
                      ..++.+++|++|++++|...+.+|....     ...+.      .....+.+|+.|++.+|.+..+|..+..+++|++|+
T Consensus       144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~-----~~~~~------~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  212 (328)
T 4fcg_A          144 ASIASLNRLRELSIRACPELTELPEPLA-----STDAS------GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK  212 (328)
T ss_dssp             GGGGGCTTCCEEEEEEETTCCCCCSCSE-----EEC-C------CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEE
T ss_pred             HHHhcCcCCCEEECCCCCCccccChhHh-----hccch------hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEE
Confidence            6667777777777777666655553221     00000      000124456666666666667777788888888888


Q ss_pred             eccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-ccCcccCCCCCccEEeecCCCCCC
Q 042875          187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLD  265 (432)
Q Consensus       187 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~  265 (432)
                      +++|.+.+ ++..+..+++|+.|++++|...+.+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+..+
T Consensus       213 L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          213 IRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             EESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             ccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence            88887664 5666888888889999888888888888888888999998887665 677778888999999999998888


Q ss_pred             ccccccCCccccccccccccccc
Q 042875          266 KLPDNIGNLESLRHISAAGSAIS  288 (432)
Q Consensus       266 ~~~~~~~~l~~L~~L~l~~~~~~  288 (432)
                      .+|..+.++++|+.+++..+.+.
T Consensus       292 ~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          292 RLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hccHHHhhccCceEEeCCHHHHH
Confidence            99988889999988888766544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=4.7e-24  Score=197.09  Aligned_cols=242  Identities=18%  Similarity=0.172  Sum_probs=145.0

Q ss_pred             CccEEEecccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeec
Q 042875          158 KITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLD  236 (432)
Q Consensus       158 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  236 (432)
                      +++.|++.++.+..++. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            45555555555555544 56666777777777766555555556666777777777666554444446667777777777


Q ss_pred             cccccccCc--ccCCCCCccEEeecCCCCCCc-cccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCC
Q 042875          237 GTAITELPS--SFENLPGLEELFVSDCSKLDK-LPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLV  312 (432)
Q Consensus       237 ~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~  312 (432)
                      +|.++.++.  .+..+++|++|++++|..... .+..+..+++|++|++++|.+... +..+..+++|++|++++|.. .
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~  211 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-I  211 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-T
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-c
Confidence            776666654  566667777777776643332 344566667777777777766633 55666667777777776663 3


Q ss_pred             CCchhhhcCCCCccEEEeeccCCCCCch----hhhcCCCCCEEEeeCCCCc-----ccChhccCCCCCCeeeccCCCCCc
Q 042875          313 SLPRSLLLGLSSLGLLYIMNCAVMEIPQ----EIAYLSSLKSLDLRGNNFE-----SLPASIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~-----~l~~~~~~l~~L~~L~l~~~~~~~  383 (432)
                      .++...+..+++|+.|++++|.+..++.    .....+.++.++++++.++     .+|..+..+++|++|++++|++. 
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-  290 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-  290 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence            4444444456667777777776665321    1223455666666666555     34555666666666666666644 


Q ss_pred             ccCC----CCCCccEEeccCCC
Q 042875          384 SLPA----LPLCLKYLHLTGCN  401 (432)
Q Consensus       384 ~~~~----~~~~L~~L~l~~c~  401 (432)
                      .+|.    .+++|++|++.+|+
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCHHHHhcCCCCCEEEeeCCC
Confidence            3432    23456666666664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=5.6e-23  Score=201.46  Aligned_cols=261  Identities=18%  Similarity=0.230  Sum_probs=155.9

Q ss_pred             hhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCce
Q 042875           60 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPV  139 (432)
Q Consensus        60 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~  139 (432)
                      .+++.|+++++.++.+|..+. ++|++|++++|.++.        +|.   .+++|++|++++|.+. .+|.  .+++|+
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~--------lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~  104 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQLT-SLPV--LPPGLL  104 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSC--------CCC---CCTTCCEEEECSCCCS-CCCC--CCTTCC
T ss_pred             CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCC--------CCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCC
Confidence            368999999999999988765 799999999999875        554   5688999999987654 4555  677888


Q ss_pred             EEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCccc
Q 042875          140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER  219 (432)
Q Consensus       140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  219 (432)
                      +|++++|.+. .++..+.+|+.|++.+|.+..+|..   +++|++|++++|.+.+ ++.   ...+|+.|++++|.+.. 
T Consensus       105 ~L~Ls~N~l~-~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          105 ELSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             EEEECSCCCC-CCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             EEECcCCcCC-CCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence            8888887655 3444556666666666666666553   2566666666664432 221   23445555555543332 


Q ss_pred             chHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCC
Q 042875          220 FPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNA  299 (432)
Q Consensus       220 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  299 (432)
                      +|   ..+++|+.|++++|.++.+|..   +++|+.|+                        +++|.+..++..   +++
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~------------------------L~~N~l~~l~~~---~~~  222 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLW------------------------AYNNRLTSLPAL---PSG  222 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEE------------------------CCSSCCSSCCCC---CTT
T ss_pred             Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEE------------------------CcCCcccccCCC---CCC
Confidence            22   2334455555555554444321   23444444                        444444433321   244


Q ss_pred             CcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCC
Q 042875          300 LLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRC  379 (432)
Q Consensus       300 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~  379 (432)
                      |+.|++++|.+.. ++    ..+++|+.|++++|.++.+|.   .+++|+.|++++|.++.+|..+..+++|+.|++++|
T Consensus       223 L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          223 LKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             CCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSC
T ss_pred             CCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCC
Confidence            5555555554322 22    134556666666666665554   445666666666666666666666666666666666


Q ss_pred             CCCccc
Q 042875          380 NMLQSL  385 (432)
Q Consensus       380 ~~~~~~  385 (432)
                      ++.+..
T Consensus       295 ~l~~~~  300 (622)
T 3g06_A          295 PLSERT  300 (622)
T ss_dssp             CCCHHH
T ss_pred             CCCCcC
Confidence            654433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=5.1e-24  Score=190.82  Aligned_cols=219  Identities=22%  Similarity=0.286  Sum_probs=134.0

Q ss_pred             EEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc-c
Q 042875          162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA-I  240 (432)
Q Consensus       162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~  240 (432)
                      ++..++++..+|..+  .+++++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|. +
T Consensus        16 ~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l   93 (285)
T 1ozn_A           16 TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (285)
T ss_dssp             EECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence            344444444454433  2456666666655544444455556666666666655544445555666666666666664 5


Q ss_pred             ccc-CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCCCCCchhh
Q 042875          241 TEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGLVSLPRSL  318 (432)
Q Consensus       241 ~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~  318 (432)
                      +.+ +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..++. .+..+++|++|++++|.+. .++...
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~  172 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERA  172 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTT
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHH
Confidence            544 4455666666666666666555555556666666666666666664443 3556666777777766533 333333


Q ss_pred             hcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCCCc
Q 042875          319 LLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       319 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~  383 (432)
                      +..+++|+.|++++|.+.. .|..+..+++|+.|++++|.++.++. .+..+++|++|++++|++..
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            4566777777777777776 36667777777777777777776653 46777777777777777644

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=1.3e-23  Score=190.27  Aligned_cols=242  Identities=22%  Similarity=0.251  Sum_probs=164.1

Q ss_pred             eEEEecCcccccccCC-CCCCccEEEeccccccccccc-ccCCCCCCEEeeccccccc--cccchhcCCCCccEEEecCc
Q 042875          139 VTINFSYCVTLIEFPQ-ISGKITRLYLDQSAIEEVPSS-IECLTDLEVLDLRDCKRLK--RISTRFCKLRSLVDLFVNGC  214 (432)
Q Consensus       139 ~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~  214 (432)
                      +.++.+++... .+|. ...+++.|++.++.+..+|.. +..+++|++|++++|.+..  ..+..+..+++|+.|++++|
T Consensus        10 ~~l~c~~~~l~-~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             CEEEcCCCCcc-cCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            45566555433 4444 334788888888888777764 5778888888888876543  23455666788888888877


Q ss_pred             cCcccchHhhhcCCCCCeeeeccccccccCc--ccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc--c
Q 042875          215 LNLERFPEILEKMEHLKRINLDGTAITELPS--SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ--L  290 (432)
Q Consensus       215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~  290 (432)
                      .+. .++..+..+++|++|++++|.++.++.  .+..+++|++|++++|.+....+..+..+++|++|++++|.+..  .
T Consensus        89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            554 355556777888888888887776553  56777788888888877766666667777788888888777763  5


Q ss_pred             CccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCc-ccChhccCC
Q 042875          291 PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFE-SLPASIKQL  368 (432)
Q Consensus       291 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~-~l~~~~~~l  368 (432)
                      +..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.++ ..|..+..+
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            6667777777777777776444323 234466777777777777776433 4666777777777777776 344555666


Q ss_pred             -CCCCeeeccCCCCCc
Q 042875          369 -SRLCSLDLRRCNMLQ  383 (432)
Q Consensus       369 -~~L~~L~l~~~~~~~  383 (432)
                       ++|++|++++|++..
T Consensus       247 ~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          247 PSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTCCEEECTTCCEEC
T ss_pred             hccCCEEEccCCCeec
Confidence             377777777776543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=4.4e-24  Score=193.32  Aligned_cols=166  Identities=25%  Similarity=0.317  Sum_probs=89.4

Q ss_pred             ccccccccCCCCCCEEeecccccccccc-chhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccc--cCcc
Q 042875          170 EEVPSSIECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITE--LPSS  246 (432)
Q Consensus       170 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~  246 (432)
                      ..++..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.  .|..
T Consensus        91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  170 (306)
T 2z66_A           91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI  170 (306)
T ss_dssp             EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred             ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence            3344445556666666666665544322 345556666666666665554455555556666666666665553  4555


Q ss_pred             cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCcc
Q 042875          247 FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLG  326 (432)
Q Consensus       247 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  326 (432)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.+..++.                        ..+..+++|+
T Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~  226 (306)
T 2z66_A          171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT------------------------FPYKCLNSLQ  226 (306)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS------------------------GGGTTCTTCC
T ss_pred             HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh------------------------hhccCcccCC
Confidence            5556666666666655544444444455555555555554443322                        1123445555


Q ss_pred             EEEeeccCCCC-CchhhhcCC-CCCEEEeeCCCCc
Q 042875          327 LLYIMNCAVME-IPQEIAYLS-SLKSLDLRGNNFE  359 (432)
Q Consensus       327 ~L~l~~~~~~~-~~~~~~~~~-~L~~L~l~~n~l~  359 (432)
                      .|++++|.+.. .+..+..++ +|+.|++++|.++
T Consensus       227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             EeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            55555555554 333444443 6666666666655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=9.4e-23  Score=199.86  Aligned_cols=264  Identities=19%  Similarity=0.210  Sum_probs=200.5

Q ss_pred             ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCc
Q 042875           29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSS  108 (432)
Q Consensus        29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  108 (432)
                      .+++.|+++++.+.       .+|..+.  + +|++|++++|.++.+|.  .+++|++|++++|.++.        +|. 
T Consensus        40 ~~l~~L~ls~n~L~-------~lp~~l~--~-~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--------lp~-   98 (622)
T 3g06_A           40 NGNAVLNVGESGLT-------TLPDCLP--A-HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--------LPV-   98 (622)
T ss_dssp             HCCCEEECCSSCCS-------CCCSCCC--T-TCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--------CCC-
T ss_pred             CCCcEEEecCCCcC-------ccChhhC--C-CCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--------CCC-
Confidence            46999999999997       5676654  4 99999999999999988  67899999999999875        554 


Q ss_pred             ccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeec
Q 042875          109 IQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLR  188 (432)
Q Consensus       109 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  188 (432)
                        .+++|++|++++|.... ++.  .+++|+.|++++|.+. .+|..+++|+.|++++|.+..+|..   +++|+.|+++
T Consensus        99 --~l~~L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~  169 (622)
T 3g06_A           99 --LPPGLLELSIFSNPLTH-LPA--LPSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPAL---PSELCKLWAY  169 (622)
T ss_dssp             --CCTTCCEEEECSCCCCC-CCC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred             --CCCCCCEEECcCCcCCC-CCC--CCCCcCEEECCCCCCC-cCCCCCCCCCEEECcCCcCCCcCCc---cCCCCEEECC
Confidence              67899999999986544 555  6789999999999765 5777889999999999999988763   4789999999


Q ss_pred             cccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccc
Q 042875          189 DCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLP  268 (432)
Q Consensus       189 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  268 (432)
                      +|.+.. ++   ..+++|+.|++++|.+.+ +|.   ..++|+.|++++|.++.+|..   +++|+.|++++|.+.+ +|
T Consensus       170 ~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp  237 (622)
T 3g06_A          170 NNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP  237 (622)
T ss_dssp             SSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC
T ss_pred             CCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC
Confidence            987655 44   457899999999987654 443   357899999999999877643   4677778887775543 33


Q ss_pred             cccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCC
Q 042875          269 DNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSL  348 (432)
Q Consensus       269 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  348 (432)
                         ..+++|++|++++|.+..+|.                            .+++|+.|++++|.++.+|..+..+++|
T Consensus       238 ---~~l~~L~~L~Ls~N~L~~lp~----------------------------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L  286 (622)
T 3g06_A          238 ---VLPSELKELMVSGNRLTSLPM----------------------------LPSGLLSLSVYRNQLTRLPESLIHLSSE  286 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSCCCC----------------------------CCTTCCEEECCSSCCCSCCGGGGGSCTT
T ss_pred             ---CCCCcCcEEECCCCCCCcCCc----------------------------ccccCcEEeCCCCCCCcCCHHHhhcccc
Confidence               233455555555554443332                            3456777777777777777777777888


Q ss_pred             CEEEeeCCCCc-ccChhc
Q 042875          349 KSLDLRGNNFE-SLPASI  365 (432)
Q Consensus       349 ~~L~l~~n~l~-~l~~~~  365 (432)
                      +.|++++|.++ ..|..+
T Consensus       287 ~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          287 TTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             CEEECCSCCCCHHHHHHH
T ss_pred             CEEEecCCCCCCcCHHHH
Confidence            88888888777 334433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=2.2e-26  Score=228.02  Aligned_cols=334  Identities=12%  Similarity=0.092  Sum_probs=156.1

Q ss_pred             hcceeecCCCCCCCC--CCCC-CCCCceeeeeccc-cccccCCCcccccCCcccCcccCceEeccCCccCCc----CCCC
Q 042875           61 KLRYLHWDTYPLRIL--PSNF-KPKNLVELNLRFS-KVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS----FPSN  132 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l--~~~~-~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~  132 (432)
                      +|++|+++++.++..  .... .+++|++|++++| .++..   .   ++..+.++++|++|++++|...+.    ++.+
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~---l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD---G---LAAIAATCRNLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH---H---HHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH---H---HHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence            566666665544311  1111 3556666666655 33210   1   222233555666666665553321    1111


Q ss_pred             -CCCCCceEEEecCcc--ccc----ccCCCCCCccEEEeccc-ccccccccccCCCCCCEEeecccc-------------
Q 042875          133 -LHFVCPVTINFSYCV--TLI----EFPQISGKITRLYLDQS-AIEEVPSSIECLTDLEVLDLRDCK-------------  191 (432)
Q Consensus       133 -~~~~~L~~L~l~~~~--~~~----~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~-------------  191 (432)
                       ..+++|++|++++|.  ...    .+....++|+.|++.++ ....++..+..+++|+.|++..+.             
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence             135566666665554  110    01112345556665554 233344444445555555543321             


Q ss_pred             -----------------ccccccchhcCCCCccEEEecCccCccc-chHhhhcCCCCCeeeecccccc--ccCcccCCCC
Q 042875          192 -----------------RLKRISTRFCKLRSLVDLFVNGCLNLER-FPEILEKMEHLKRINLDGTAIT--ELPSSFENLP  251 (432)
Q Consensus       192 -----------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~  251 (432)
                                       ....++..+..+++|+.|++++|.+... +...+..+++|++|+++++ +.  .++.....++
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence                             1112333333456666666666653322 2223445666666666665 33  2222223456


Q ss_pred             CccEEeecCC--------C-CCCcccccc-CCccccccccccccccc--ccCccccCCCCCcEEecc-----CCCCCCCC
Q 042875          252 GLEELFVSDC--------S-KLDKLPDNI-GNLESLRHISAAGSAIS--QLPSSVADSNALLILDFS-----RCKGLVSL  314 (432)
Q Consensus       252 ~L~~L~l~~~--------~-~~~~~~~~~-~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~-----~~~~~~~~  314 (432)
                      +|++|++.++        . ..+.....+ ..+++|++|.+..+.+.  .+......+++|++|+++     +|...+..
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            6666666332        1 111111111 23566666666555554  111222345667777666     22223322


Q ss_pred             ch-----hhhcCCCCccEEEeeccCCCC-Cchhhhc-CCCCCEEEeeCCCCc--ccChhccCCCCCCeeeccCCCCCccc
Q 042875          315 PR-----SLLLGLSSLGLLYIMNCAVME-IPQEIAY-LSSLKSLDLRGNNFE--SLPASIKQLSRLCSLDLRRCNMLQSL  385 (432)
Q Consensus       315 ~~-----~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-~~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~  385 (432)
                      +.     ..+..+++|+.|++++ .++. .+..+.. +++|+.|++++|.++  .+......+++|++|++++|++....
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~  497 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA  497 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence            11     1233456677777755 3333 2233333 666777777777665  22222245667777777777652211


Q ss_pred             ----CCCCCCccEEeccCCCC
Q 042875          386 ----PALPLCLKYLHLTGCNM  402 (432)
Q Consensus       386 ----~~~~~~L~~L~l~~c~~  402 (432)
                          ...+++|++|++++|+.
T Consensus       498 ~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          498 LLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHhCCCCCEEeeeCCCC
Confidence                12345677777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=193.92  Aligned_cols=274  Identities=14%  Similarity=0.116  Sum_probs=162.5

Q ss_pred             cccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC--CCCCCceeeeeccccccccCCCccc
Q 042875           26 TNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN--FKPKNLVELNLRFSKVEQPWEGEKA  103 (432)
Q Consensus        26 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~l~~~~~~~~~  103 (432)
                      -.|+.....+.+++.++       .+|..+.   .+|++|+++++.++.++..  .++++|++|++++|.++.+      
T Consensus        28 ~~C~~~~~c~~~~~~l~-------~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~------   91 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLN-------SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI------   91 (353)
T ss_dssp             CEECTTSEEECCSTTCS-------SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE------
T ss_pred             CCCCCCeEeeCCCCCcc-------ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc------
Confidence            35666667777777776       4565443   3788888888888877662  3788888888888888753      


Q ss_pred             ccCCcccCcccCceEeccCCccCCcCCC-CCCCCCceEEEecCcccccccCC-----CCCCccEEEeccc-ccccc-ccc
Q 042875          104 CVPSSIQNFKYLSALSFEGCKSLRSFPS-NLHFVCPVTINFSYCVTLIEFPQ-----ISGKITRLYLDQS-AIEEV-PSS  175 (432)
Q Consensus       104 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-----~~~~L~~L~l~~~-~~~~~-~~~  175 (432)
                       .+..+..+++|++|++++|......+. +..+++|++|++++|.+.. ++.     .+++|+.|++.+| .+..+ +..
T Consensus        92 -~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  169 (353)
T 2z80_A           92 -EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKD  169 (353)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred             -CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHH
Confidence             345578888888888888766543223 5668888888888876552 221     2345555555554 23333 234


Q ss_pred             ccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcc----cCCCC
Q 042875          176 IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS----FENLP  251 (432)
Q Consensus       176 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~l~  251 (432)
                      +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|++++|.++.++..    ....+
T Consensus       170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~  249 (353)
T 2z80_A          170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS  249 (353)
T ss_dssp             TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred             ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence            55566666666666655555555566666666666666554322222233456666666666655533210    11122


Q ss_pred             CccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEee
Q 042875          252 GLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM  331 (432)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  331 (432)
                      .++.++++++                   .+.++.+..+|..+..+++|+.|++++|.+. .++...+..+++|+.|+++
T Consensus       250 ~l~~l~L~~~-------------------~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~  309 (353)
T 2z80_A          250 LIKKFTFRNV-------------------KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLH  309 (353)
T ss_dssp             CCCEEEEESC-------------------BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             hhhccccccc-------------------cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEee
Confidence            3333333333                   2333333345555666667777777766643 4555545566777777777


Q ss_pred             ccCCCC
Q 042875          332 NCAVME  337 (432)
Q Consensus       332 ~~~~~~  337 (432)
                      +|.+..
T Consensus       310 ~N~~~~  315 (353)
T 2z80_A          310 TNPWDC  315 (353)
T ss_dssp             SSCBCC
T ss_pred             CCCccC
Confidence            776655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=5.8e-25  Score=199.40  Aligned_cols=201  Identities=18%  Similarity=0.187  Sum_probs=142.1

Q ss_pred             CCCCCCEEeeccccccccccchh--cCCCCccEEEecCccCcccchHhhhcC-----CCCCeeeeccccccccC-cccCC
Q 042875          178 CLTDLEVLDLRDCKRLKRISTRF--CKLRSLVDLFVNGCLNLERFPEILEKM-----EHLKRINLDGTAITELP-SSFEN  249 (432)
Q Consensus       178 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~-~~~~~  249 (432)
                      .+++|++|++++|.+.+..|..+  ..+++|+.|++++|.+.+. |..+..+     ++|++|++++|+++.++ ..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            56777788887777766666654  6777788888887766655 5555555     78888888888887655 56777


Q ss_pred             CCCccEEeecCCCCCCc--ccccc--CCcccccccccccccccccC----ccccCCCCCcEEeccCCCCCCCCchhhhcC
Q 042875          250 LPGLEELFVSDCSKLDK--LPDNI--GNLESLRHISAAGSAISQLP----SSVADSNALLILDFSRCKGLVSLPRSLLLG  321 (432)
Q Consensus       250 l~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  321 (432)
                      +++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+..++    ..+..+++|++|++++|.+.+..+...+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            88888888888876554  22233  66778888888887776332    223456778888888877666554333445


Q ss_pred             CCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC
Q 042875          322 LSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML  382 (432)
Q Consensus       322 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~  382 (432)
                      +++|+.|++++|.++.+|..+.  ++|++|++++|+++.+|. +..+++|++|++++|++.
T Consensus       252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred             cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence            6778888888888877776655  778888888888887765 777788888888887754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=7.9e-23  Score=183.07  Aligned_cols=202  Identities=23%  Similarity=0.321  Sum_probs=163.1

Q ss_pred             CCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCcc-CcccchHhhhcCCCCCeee
Q 042875          157 GKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL-NLERFPEILEKMEHLKRIN  234 (432)
Q Consensus       157 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~  234 (432)
                      .+++.|++.++.+..++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|. +....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            35566666666665555 357788999999999988777667788889999999999886 4444467788899999999


Q ss_pred             ecccccccc-CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCCC
Q 042875          235 LDGTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGLV  312 (432)
Q Consensus       235 l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~  312 (432)
                      +++|.++.+ +..+..+++|++|++++|.+....+..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.+
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            999998865 5567888999999999988776666668889999999999999886665 47888999999999998655


Q ss_pred             CCchhhhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCc
Q 042875          313 SLPRSLLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~  359 (432)
                      ..+. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus       192 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          192 VHPH-AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECTT-TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCHh-HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            4444 35678999999999999999664 5888999999999999887

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=3.8e-22  Score=189.88  Aligned_cols=223  Identities=22%  Similarity=0.263  Sum_probs=171.5

Q ss_pred             CCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875          157 GKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL  235 (432)
Q Consensus       157 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  235 (432)
                      .+++.|++.+|.+..++ ..+.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            35666666666666554 46778888888888888877666677888888888888888766555556788888888888


Q ss_pred             ccccccccCc-ccCCCCCccEEeecCCCCCCcccc-ccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCC
Q 042875          236 DGTAITELPS-SFENLPGLEELFVSDCSKLDKLPD-NIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVS  313 (432)
Q Consensus       236 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  313 (432)
                      ++|.++.++. .+..+++|+.|++++|+....++. .+.++++|++|++++|.+..++ .+..+++|+.|++++|.+.. 
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~-  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA-  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE-
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc-
Confidence            8888886654 677888888998888766665554 5778888888998888888776 46778888888888887544 


Q ss_pred             CchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCC
Q 042875          314 LPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       314 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~  381 (432)
                      ++...+..+++|+.|++++|.+.. .+..+..+++|+.|++++|+++.+|. .+..+++|++|++++|++
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            333346678888899988888888 45567788889999998888886654 457788888888888875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=5e-22  Score=189.70  Aligned_cols=223  Identities=26%  Similarity=0.283  Sum_probs=176.2

Q ss_pred             CCccEEEecccccccc-cccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875          157 GKITRLYLDQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL  235 (432)
Q Consensus       157 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  235 (432)
                      .+++.|++.+|.+..+ +..+.++++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            3566666666666655 456788889999999998877766777888899999999988776656666788889999999


Q ss_pred             ccccccccCc-ccCCCCCccEEeecCCCCCCcccc-ccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCC
Q 042875          236 DGTAITELPS-SFENLPGLEELFVSDCSKLDKLPD-NIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVS  313 (432)
Q Consensus       236 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  313 (432)
                      ++|.++.++. .+..+++|+.|++++|+....++. .+..+++|++|++++|.+..++ .+..+++|+.|++++|.+.+.
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCccc
Confidence            9998886654 677888999999998766666654 4778889999999999888775 467788899999998886554


Q ss_pred             CchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCC
Q 042875          314 LPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       314 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~  381 (432)
                      .+. .+..+++|+.|++++|.+.. .+..+..+++|+.|++++|+++.+|. .+..+++|++|++++|+.
T Consensus       234 ~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          234 RPG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CGG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             Ccc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            443 46678889999999998888 45667888899999999998887664 457788899999998875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=6.7e-22  Score=188.16  Aligned_cols=238  Identities=18%  Similarity=0.225  Sum_probs=200.8

Q ss_pred             ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875          159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT  238 (432)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  238 (432)
                      .+.++..+.++..+|..+.  ++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            3456666677788888775  68999999999988777788999999999999999887777788999999999999999


Q ss_pred             cccccCc-ccCCCCCccEEeecCCCCCCccccccCCcccccccccccc-cccccCc-cccCCCCCcEEeccCCCCCCCCc
Q 042875          239 AITELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS-AISQLPS-SVADSNALLILDFSRCKGLVSLP  315 (432)
Q Consensus       239 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~  315 (432)
                      .++.++. .+..+++|++|++++|.+....+..+..+++|++|+++++ .+..++. .+..+++|++|++++|.+. .++
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence            9997765 5889999999999999887666667889999999999985 4555444 6788999999999999854 444


Q ss_pred             hhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCC---CCC
Q 042875          316 RSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPA---LPL  390 (432)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~  390 (432)
                      .  +..+++|+.|++++|.+.. .+..+..+++|+.|++++|+++.+ +..+..+++|++|++++|++.+..+.   .++
T Consensus       202 ~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          202 N--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             C--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             c--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence            3  5578999999999999999 477889999999999999999955 56788999999999999987654443   347


Q ss_pred             CccEEeccCCC
Q 042875          391 CLKYLHLTGCN  401 (432)
Q Consensus       391 ~L~~L~l~~c~  401 (432)
                      +|+.|++.+|+
T Consensus       280 ~L~~L~L~~Np  290 (440)
T 3zyj_A          280 HLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEcCCCC
Confidence            89999999986

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=9.4e-24  Score=191.89  Aligned_cols=238  Identities=13%  Similarity=0.132  Sum_probs=180.0

Q ss_pred             CCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875          157 GKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL  235 (432)
Q Consensus       157 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  235 (432)
                      ++++.|++++|.+..++ ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.     ...++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEEC
Confidence            34555555555555544 467788889999998887765443  77888899999988765432     23478899999


Q ss_pred             ccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccc-cCCCCCcEEeccCCCCCCC
Q 042875          236 DGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSV-ADSNALLILDFSRCKGLVS  313 (432)
Q Consensus       236 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~  313 (432)
                      ++|.++.++.  ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..++ ..+ ..+++|++|++++|.+...
T Consensus       107 ~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             CSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence            9988886553  34678999999998887776767788899999999999887433 333 4678999999999885443


Q ss_pred             CchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC-cccCC---CC
Q 042875          314 LPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML-QSLPA---LP  389 (432)
Q Consensus       314 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~---~~  389 (432)
                       +.  ...+++|++|++++|.++.++..+..+++|+.|++++|.++.+|..+..+++|++|++++|++. ..++.   .+
T Consensus       185 -~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          185 -KG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             -EC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             -cc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence             32  2247889999999999999887888899999999999999988888888999999999999876 33432   34


Q ss_pred             CCccEEeccCCCCcccc
Q 042875          390 LCLKYLHLTGCNMLRSL  406 (432)
Q Consensus       390 ~~L~~L~l~~c~~l~~l  406 (432)
                      +.|+.+++.+|+.++..
T Consensus       262 ~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          262 QRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             HHHHHHHHHHHHHHHSS
T ss_pred             ccceEEECCCchhccCC
Confidence            56778888776655543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=8.3e-22  Score=188.20  Aligned_cols=238  Identities=20%  Similarity=0.202  Sum_probs=199.7

Q ss_pred             ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875          159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT  238 (432)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  238 (432)
                      ...++..+.++..+|..+.  ++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            3455666666777887664  68999999999988877888999999999999999888777788999999999999999


Q ss_pred             cccccCcc-cCCCCCccEEeecCCCCCCccccccCCcccccccccccc-cccccCc-cccCCCCCcEEeccCCCCCCCCc
Q 042875          239 AITELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS-AISQLPS-SVADSNALLILDFSRCKGLVSLP  315 (432)
Q Consensus       239 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~  315 (432)
                      .++.++.. +..+++|++|++++|.+....+..+..+++|++|+++++ .+..++. .+..+++|++|++++|.+.. ++
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~  212 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP  212 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc
Confidence            99977654 788999999999999887655667889999999999984 5555544 57889999999999998654 34


Q ss_pred             hhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCC---CCC
Q 042875          316 RSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPA---LPL  390 (432)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~  390 (432)
                      .  +..+++|+.|++++|.+.. .|..+..+++|+.|++++|+++.+ +..+..+++|++|++++|++.+..+.   .++
T Consensus       213 ~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          213 N--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             C--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             c--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            2  5578999999999999999 577889999999999999999955 56788999999999999987654443   347


Q ss_pred             CccEEeccCCC
Q 042875          391 CLKYLHLTGCN  401 (432)
Q Consensus       391 ~L~~L~l~~c~  401 (432)
                      +|+.|++.+|+
T Consensus       291 ~L~~L~L~~Np  301 (452)
T 3zyi_A          291 YLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCC
Confidence            89999999986

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.89  E-value=2.7e-25  Score=220.26  Aligned_cols=365  Identities=14%  Similarity=0.104  Sum_probs=240.4

Q ss_pred             hcccccceeeeeccccccccccccccCCcccc-chhhhcceeecCCC-CCCC--CCCCC-CCCCceeeeeccccccccCC
Q 042875           25 FTNMSNLRLLKFYVPKFYEIERFPMQLPNGLE-YLPEKLRYLHWDTY-PLRI--LPSNF-KPKNLVELNLRFSKVEQPWE   99 (432)
Q Consensus        25 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~-~l~~~L~~L~l~~~-~~~~--l~~~~-~~~~L~~L~l~~~~l~~~~~   99 (432)
                      ...+++|++|++++|.+.+      ..+..+. .++ +|++|++++| .++.  ++... ++++|++|++++|.+++...
T Consensus       101 ~~~~~~L~~L~L~~~~~~~------~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~  173 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTD------DCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG  173 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCH------HHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred             HHhCCCCCeEEeeCcEEcH------HHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence            4578999999999998875      3333443 465 9999999988 5543  44444 78899999999998775432


Q ss_pred             CcccccCCcccCcccCceEeccCCcc-CC--cCCC-CCCCCCceEEEecCcccccccCC---CCCCccEEEeccc-----
Q 042875          100 GEKACVPSSIQNFKYLSALSFEGCKS-LR--SFPS-NLHFVCPVTINFSYCVTLIEFPQ---ISGKITRLYLDQS-----  167 (432)
Q Consensus       100 ~~~~~~~~~~~~l~~L~~L~l~~~~~-~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~-----  167 (432)
                      ..   ++.....+++|+.|++++|.. .+  .+.. ...+++|++|++++|.....++.   ..++|+.|.+..+     
T Consensus       174 ~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  250 (594)
T 2p1m_B          174 HW---LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR  250 (594)
T ss_dssp             GG---GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCC
T ss_pred             HH---HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccc
Confidence            22   344445788999999998761 11  1111 23378999999998844333332   3346666664332     


Q ss_pred             --------------------------ccccccccccCCCCCCEEeecccccccc-ccchhcCCCCccEEEecCccCcccc
Q 042875          168 --------------------------AIEEVPSSIECLTDLEVLDLRDCKRLKR-ISTRFCKLRSLVDLFVNGCLNLERF  220 (432)
Q Consensus       168 --------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~  220 (432)
                                                ....++..+..+++|+.|++++|.+... +...+..+++|+.|++.+|.....+
T Consensus       251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l  330 (594)
T 2p1m_B          251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL  330 (594)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHH
T ss_pred             hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHH
Confidence                                      1123343444678999999999985443 3334568899999999987221223


Q ss_pred             hHhhhcCCCCCeeeecc---------cccc--ccCcccCCCCCccEEeecCCCCCCccccccC-Ccccccccccc--c--
Q 042875          221 PEILEKMEHLKRINLDG---------TAIT--ELPSSFENLPGLEELFVSDCSKLDKLPDNIG-NLESLRHISAA--G--  284 (432)
Q Consensus       221 ~~~l~~l~~L~~L~l~~---------~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~--~--  284 (432)
                      +.....+++|++|++.+         +.++  .+......+++|+.|.+..+.+.+.....+. .+++|+.|+++  +  
T Consensus       331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~  410 (594)
T 2p1m_B          331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK  410 (594)
T ss_dssp             HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred             HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence            34445689999999943         4444  2222223478999998877766554444443 57899999998  3  


Q ss_pred             --cccccc------CccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-Cchhh-hcCCCCCEEEee
Q 042875          285 --SAISQL------PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEI-AYLSSLKSLDLR  354 (432)
Q Consensus       285 --~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~-~~~~~L~~L~l~  354 (432)
                        +.+...      +..+..+++|++|++++ ...+.....+...+++|+.|++++|.++. .+..+ ..+++|++|+++
T Consensus       411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~  489 (594)
T 2p1m_B          411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR  489 (594)
T ss_dssp             CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred             CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence              344422      22367789999999977 43333333333347899999999999876 33333 679999999999


Q ss_pred             CCCCc--ccChhccCCCCCCeeeccCCCCCccc----CCCCCCccEEeccCC
Q 042875          355 GNNFE--SLPASIKQLSRLCSLDLRRCNMLQSL----PALPLCLKYLHLTGC  400 (432)
Q Consensus       355 ~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~c  400 (432)
                      +|.++  .+...+..+++|++|++++|+.....    ...++.|+...+...
T Consensus       490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             SCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             CCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            99987  23345567899999999999873321    123355655555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=4.1e-24  Score=194.30  Aligned_cols=237  Identities=13%  Similarity=-0.015  Sum_probs=138.6

Q ss_pred             cceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC--CCCCCceeeeeccccccccCCCcccccCC
Q 042875           30 NLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN--FKPKNLVELNLRFSKVEQPWEGEKACVPS  107 (432)
Q Consensus        30 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  107 (432)
                      .++..+++.+.+..      ........++ +|++|++++|.++.++..  ..+++|++|++++|.++.        +++
T Consensus        11 ~l~i~~ls~~~l~~------~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~   75 (317)
T 3o53_A           11 RYKIEKVTDSSLKQ------ALASLRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--------TLD   75 (317)
T ss_dssp             EEEEESCCTTTHHH------HHHHHHTTGG-GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE--------EEE
T ss_pred             ceeEeeccccchhh------hHHHHhccCC-CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc--------chh
Confidence            45566666666543      1222223343 788888888877766532  277778888888777763        222


Q ss_pred             cccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEee
Q 042875          108 SIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDL  187 (432)
Q Consensus       108 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  187 (432)
                       +..+++|++|++++|...+ ++   ..++|++|++++|.+.                     .++..  .+++|+.|++
T Consensus        76 -~~~l~~L~~L~Ls~n~l~~-l~---~~~~L~~L~l~~n~l~---------------------~~~~~--~~~~L~~L~l  127 (317)
T 3o53_A           76 -LESLSTLRTLDLNNNYVQE-LL---VGPSIETLHAANNNIS---------------------RVSCS--RGQGKKNIYL  127 (317)
T ss_dssp             -ETTCTTCCEEECCSSEEEE-EE---ECTTCCEEECCSSCCS---------------------EEEEC--CCSSCEEEEC
T ss_pred             -hhhcCCCCEEECcCCcccc-cc---CCCCcCEEECCCCccC---------------------CcCcc--ccCCCCEEEC
Confidence             6677777777777765432 11   1245555555555433                     33321  2456777777


Q ss_pred             ccccccccccchhcCCCCccEEEecCccCcccchHhh-hcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCc
Q 042875          188 RDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEIL-EKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDK  266 (432)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  266 (432)
                      ++|.+....+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.++.++. ...+++|++|++++|.+.+ 
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-  205 (317)
T 3o53_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-  205 (317)
T ss_dssp             CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-
T ss_pred             CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCc-
Confidence            7766655555556667777777777766655544444 356777777777777765532 2346667777777665543 


Q ss_pred             cccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCC
Q 042875          267 LPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGL  311 (432)
Q Consensus       267 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  311 (432)
                      ++..+..+++|++|++++|.+..+|..+..+++|+.|++++|...
T Consensus       206 l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            333455566666666666666655555555555555555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=8.9e-24  Score=191.61  Aligned_cols=238  Identities=22%  Similarity=0.199  Sum_probs=130.9

Q ss_pred             CCCCEEeeccccccccccchhcCCCCccEEEecCccCc-ccchHhhh-------cCCCCCeeeecccccc-ccCccc--C
Q 042875          180 TDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL-ERFPEILE-------KMEHLKRINLDGTAIT-ELPSSF--E  248 (432)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~-~~~~~~--~  248 (432)
                      ++|+.+++++|.+  .+|..+...  |+.|+++++.+. ..++..+.       .+++|++|++++|.++ .+|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            3445555555544  333333222  555555554442 22333332       4556666666666665 344443  5


Q ss_pred             CCCCccEEeecCCCCCCccccccCCc-----ccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCC--chh-hh
Q 042875          249 NLPGLEELFVSDCSKLDKLPDNIGNL-----ESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSL--PRS-LL  319 (432)
Q Consensus       249 ~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~-~~  319 (432)
                      .+++|++|++++|.+.+. |..+..+     ++|++|++++|.+..++ ..++.+++|++|++++|.+.+..  +.. .+
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            566666666666655544 4444444     56666666666666444 45566666666666666644331  111 12


Q ss_pred             cCCCCccEEEeeccCCCCCc---h-hhhcCCCCCEEEeeCCCCcccC--hhccCCCCCCeeeccCCCCCcccCCC-CCCc
Q 042875          320 LGLSSLGLLYIMNCAVMEIP---Q-EIAYLSSLKSLDLRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQSLPAL-PLCL  392 (432)
Q Consensus       320 ~~~~~L~~L~l~~~~~~~~~---~-~~~~~~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~L  392 (432)
                      ..+++|++|++++|.+..++   . .+..+++|++|++++|+++..+  ..+..+++|++|++++|.+. .+|.. +++|
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L  276 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKL  276 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCc
Confidence            45667777777777766422   2 2245667777777777776433  33445667777777777654 45532 2567


Q ss_pred             cEEeccCCCCccccCC--CCCccceeccccccccc
Q 042875          393 KYLHLTGCNMLRSLPE--LPLCLQELDATNCNRLQ  425 (432)
Q Consensus       393 ~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~  425 (432)
                      ++|++++| .++.+|.  ..+.|++|++++ +.++
T Consensus       277 ~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~-N~l~  309 (312)
T 1wwl_A          277 SVLDLSYN-RLDRNPSPDELPQVGNLSLKG-NPFL  309 (312)
T ss_dssp             EEEECCSS-CCCSCCCTTTSCEEEEEECTT-CTTT
T ss_pred             eEEECCCC-CCCCChhHhhCCCCCEEeccC-CCCC
Confidence            77777774 3454443  456677777777 3443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=3.5e-22  Score=191.87  Aligned_cols=213  Identities=14%  Similarity=0.023  Sum_probs=126.0

Q ss_pred             hcceeecCCCCCCCCCC-CC-CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCc
Q 042875           61 KLRYLHWDTYPLRILPS-NF-KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCP  138 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L  138 (432)
                      +|++|++++|.++.++. .+ .+++|++|++++|.++..       .|  +..+++|++|++++|.+.+ ++   ..++|
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~--l~~l~~L~~L~Ls~N~l~~-l~---~~~~L  101 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-------LD--LESLSTLRTLDLNNNYVQE-LL---VGPSI  101 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-------EE--CTTCTTCCEEECCSSEEEE-EE---ECTTC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-------cc--cccCCCCCEEEecCCcCCC-CC---CCCCc
Confidence            66666666666655543 22 566666666666665531       11  5556666666666654322 11   11444


Q ss_pred             eEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc
Q 042875          139 VTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE  218 (432)
Q Consensus       139 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  218 (432)
                      ++|++++                     |.+..++..  .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus       102 ~~L~L~~---------------------N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A          102 ETLHAAN---------------------NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (487)
T ss_dssp             CEEECCS---------------------SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred             CEEECcC---------------------CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence            4444444                     444443332  34567777777776666556666667777777777776666


Q ss_pred             cchHhhh-cCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCC
Q 042875          219 RFPEILE-KMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADS  297 (432)
Q Consensus       219 ~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  297 (432)
                      ..|..+. .+++|++|++++|.++.++. ...+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+..+|..+..+
T Consensus       159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l  236 (487)
T 3oja_A          159 VNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFS  236 (487)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred             cChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccC
Confidence            5555554 56777777777777765533 3346677777777766554 3334566667777777777666666666666


Q ss_pred             CCCcEEeccCCCCC
Q 042875          298 NALLILDFSRCKGL  311 (432)
Q Consensus       298 ~~L~~L~l~~~~~~  311 (432)
                      ++|+.|++++|.+.
T Consensus       237 ~~L~~L~l~~N~l~  250 (487)
T 3oja_A          237 QNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTCCEEECTTCCBC
T ss_pred             CCCCEEEcCCCCCc
Confidence            66666666666544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=4.5e-21  Score=170.78  Aligned_cols=214  Identities=22%  Similarity=0.196  Sum_probs=142.2

Q ss_pred             ccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC-cc
Q 042875          168 AIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP-SS  246 (432)
Q Consensus       168 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~  246 (432)
                      .+..+|..+.  +++++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++ ..
T Consensus        18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence            3344555442  45677777776655544445666777777777776655544555666777777777777776544 45


Q ss_pred             cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc--cCccccCCCCCcEEeccCCCCCCCCchhhhcCCCC
Q 042875          247 FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ--LPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSS  324 (432)
Q Consensus       247 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  324 (432)
                      +..+++|++|++++|.+....+..+..+++|++|++++|.+..  ++..+..+++|++|++++|.+.+..+. .+..+.+
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~  174 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQ  174 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHT
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-Hhhhhhh
Confidence            6677777777777776655555456677777777777777764  566777777778888777765443222 2223334


Q ss_pred             cc----EEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChh-ccCCCCCCeeeccCCCCCcc
Q 042875          325 LG----LLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS-IKQLSRLCSLDLRRCNMLQS  384 (432)
Q Consensus       325 L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~~  384 (432)
                      ++    .+++++|.+..++.......+|+.|++++|.++.+|.. +..+++|++|++++|++...
T Consensus       175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             ccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            44    78888888888666655566888888888888877654 47788888888888876543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=4.3e-21  Score=184.33  Aligned_cols=232  Identities=13%  Similarity=0.129  Sum_probs=176.9

Q ss_pred             CCCCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCee
Q 042875          155 ISGKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRI  233 (432)
Q Consensus       155 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  233 (432)
                      ..++++.|++++|.+..++ ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..     ..++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            3447889999998887765 578888899999999888766544  778888999999888655322     33788899


Q ss_pred             eeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc-cCcccc-CCCCCcEEeccCCCCC
Q 042875          234 NLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ-LPSSVA-DSNALLILDFSRCKGL  311 (432)
Q Consensus       234 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~  311 (432)
                      ++++|.++.++.  ..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.. .+..+. .+++|+.|++++|.+.
T Consensus       105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            999888886554  346788999999888887777778888889999999888874 344443 6788999999888855


Q ss_pred             CCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC-cccCC---
Q 042875          312 VSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML-QSLPA---  387 (432)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~---  387 (432)
                      +. +.  ...+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++. ..+|.   
T Consensus       183 ~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          183 DV-KG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EE-EC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             cc-cc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            43 22  2257888899999988888777788888899999999888888888888888888999888876 33332   


Q ss_pred             CCCCccEEecc
Q 042875          388 LPLCLKYLHLT  398 (432)
Q Consensus       388 ~~~~L~~L~l~  398 (432)
                      .++.|+.+++.
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            23445555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=1.3e-19  Score=161.98  Aligned_cols=197  Identities=19%  Similarity=0.209  Sum_probs=123.3

Q ss_pred             CccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc
Q 042875          158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG  237 (432)
Q Consensus       158 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  237 (432)
                      +++.+++.++++..+|..+.  +.++.|++++|.+.+..+..+..+++|+.|++++|.+.... . ...+++|++|++++
T Consensus        11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~Ls~   86 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-V-DGTLPVLGTLDLSH   86 (290)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-C-CSCCTTCCEEECCS
T ss_pred             CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-C-CCCCCcCCEEECCC
Confidence            34444455555555555443  56677777777665555566666777777777776554322 2 15667777777777


Q ss_pred             ccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCcc-ccCCCCCcEEeccCCCCCCCCch
Q 042875          238 TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS-VADSNALLILDFSRCKGLVSLPR  316 (432)
Q Consensus       238 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~  316 (432)
                      |.++.+|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..++.. +..+++|+.|++++|.+. .++.
T Consensus        87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~  165 (290)
T 1p9a_G           87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA  165 (290)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCT
T ss_pred             CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCH
Confidence            77777776667777777777777766655555566677777777777766655433 355666666666666533 3444


Q ss_pred             hhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc
Q 042875          317 SLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       317 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  359 (432)
                      ..+..+++|+.|++++|.+..+|..+...++|+.+++++|.+.
T Consensus       166 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            4445566666666666666666666666666666666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=1.7e-20  Score=166.41  Aligned_cols=225  Identities=14%  Similarity=0.085  Sum_probs=147.9

Q ss_pred             ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCc
Q 042875           29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSS  108 (432)
Q Consensus        29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  108 (432)
                      .++..+++..+.+.+        ......++ +|+.|+++++.++.++....+++|++|++++|.++.        + ..
T Consensus        19 ~~l~~l~l~~~~~~~--------~~~~~~l~-~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--------~-~~   80 (272)
T 3rfs_A           19 AETIKANLKKKSVTD--------AVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--------I-SA   80 (272)
T ss_dssp             HHHHHHHHTCSCTTS--------EECHHHHT-TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--------C-GG
T ss_pred             HHHHHHHhcCccccc--------cccccccc-ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--------c-hh
Confidence            344555666555543        12344554 777888887777777766677788888888877764        2 24


Q ss_pred             ccCcccCceEeccCCccCCcCCC-CCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEee
Q 042875          109 IQNFKYLSALSFEGCKSLRSFPS-NLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDL  187 (432)
Q Consensus       109 ~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  187 (432)
                      +..+++|++|++++|...+..+. +..+++|++|++++|.+...                    .+..+..+++|++|++
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------------~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL--------------------PDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC--------------------CTTTTTTCTTCCEEEC
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc--------------------CHHHhccCCCCCEEEC
Confidence            67777888888887765543333 45677788887777765421                    1223556677777777


Q ss_pred             ccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCc-ccCCCCCccEEeecCCCCCCc
Q 042875          188 RDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDK  266 (432)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~  266 (432)
                      ++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|++.+ 
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-  219 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-  219 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-
Confidence            7776655444556667777777777776665555556777788888888877775544 35777888888888876543 


Q ss_pred             cccccCCccccccccccccccc-ccCccccCCC
Q 042875          267 LPDNIGNLESLRHISAAGSAIS-QLPSSVADSN  298 (432)
Q Consensus       267 ~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~  298 (432)
                            .+++++.++++.|.+. .+|..++.++
T Consensus       220 ------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          220 ------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             ------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             ------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence                  3567788888777766 5565555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=5.5e-20  Score=160.03  Aligned_cols=195  Identities=16%  Similarity=0.182  Sum_probs=109.7

Q ss_pred             CccEEEecccccccccc-cccCCCCCCEEeecccc-ccccccchhcCCCCccEEEecC-ccCcccchHhhhcCCCCCeee
Q 042875          158 KITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCK-RLKRISTRFCKLRSLVDLFVNG-CLNLERFPEILEKMEHLKRIN  234 (432)
Q Consensus       158 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~  234 (432)
                      +++.|++.++.+..++. .+..+++|+.|++++|. +....+..+..+++|+.|++++ |.+....+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44455555555554444 45566666666666664 3333333455566666666665 444333334455556666666


Q ss_pred             eccccccccCcccCCCCCcc---EEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCc-EEeccCCC
Q 042875          235 LDGTAITELPSSFENLPGLE---ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALL-ILDFSRCK  309 (432)
Q Consensus       235 l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~-~L~l~~~~  309 (432)
                      +++|.++.+|. +..+++|+   .|++++|.                       .+..++. .+..+++|+ +|++++|.
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~-----------------------~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNP-----------------------YMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCT-----------------------TCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCc-----------------------chhhcCcccccchhcceeEEEcCCCC
Confidence            66665555544 44445444   55555551                       3333322 244445555 55555554


Q ss_pred             CCCCCchhhhcCCCCccEEEeeccC-CCCCc-hhhhcC-CCCCEEEeeCCCCcccChhccCCCCCCeeeccCCC
Q 042875          310 GLVSLPRSLLLGLSSLGLLYIMNCA-VMEIP-QEIAYL-SSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCN  380 (432)
Q Consensus       310 ~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~-~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~  380 (432)
                      +. .++...+.. ++|+.|++++|. +..++ ..+..+ ++|+.|++++|+++.+|..  .+++|+.|++.++.
T Consensus       168 l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          168 FT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             Cc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            33 333333333 567777777774 66654 345667 7888888888888877765  57788888887754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=3.2e-20  Score=164.73  Aligned_cols=211  Identities=16%  Similarity=0.112  Sum_probs=123.6

Q ss_pred             hhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcc
Q 042875           23 GAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEK  102 (432)
Q Consensus        23 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~  102 (432)
                      ..+..+++|+.|+++++.+.+        ...+..++ +|++|++++|.++.++....+++|++|++++|.++.+     
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~--------~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-----  100 (272)
T 3rfs_A           35 VTQNELNSIDQIIANNSDIKS--------VQGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-----  100 (272)
T ss_dssp             ECHHHHTTCCEEECTTSCCCC--------CTTGGGCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-----
T ss_pred             cccccccceeeeeeCCCCccc--------ccccccCC-CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-----
Confidence            345566666777766666652        22355564 6777777766666665445666677777776666532     


Q ss_pred             cccCCcccCcccCceEeccCCccCCcCCC-CCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCC
Q 042875          103 ACVPSSIQNFKYLSALSFEGCKSLRSFPS-NLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTD  181 (432)
Q Consensus       103 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  181 (432)
                        .+..+..+++|++|++++|...+..+. +..+++|++|++++|.+..                    ..+..+..+++
T Consensus       101 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------------------~~~~~~~~l~~  158 (272)
T 3rfs_A          101 --PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--------------------LPKGVFDKLTN  158 (272)
T ss_dssp             --CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------CCTTTTTTCTT
T ss_pred             --ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc--------------------cCHHHhccCcc
Confidence              223356666677777766655433332 3446666666666654331                    11123455666


Q ss_pred             CCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCC
Q 042875          182 LEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDC  261 (432)
Q Consensus       182 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~  261 (432)
                      |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.      +.+++++.+++..|
T Consensus       159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWIN  232 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHH
T ss_pred             CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHH
Confidence            677777766655544444566666777777666665555555566666777776666544      23455666666666


Q ss_pred             CCCCccccccCCcc
Q 042875          262 SKLDKLPDNIGNLE  275 (432)
Q Consensus       262 ~~~~~~~~~~~~l~  275 (432)
                      .+.+.+|.+++.++
T Consensus       233 ~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          233 KHSGVVRNSAGSVA  246 (272)
T ss_dssp             HTGGGBBCTTSCBC
T ss_pred             hCCCcccCcccccC
Confidence            66666666555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=2.6e-19  Score=158.69  Aligned_cols=197  Identities=23%  Similarity=0.330  Sum_probs=101.8

Q ss_pred             ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875          159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT  238 (432)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  238 (432)
                      .+.+++.++.+..+|..+.  ++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            4445555555555555443  45666666666554444445555666666666665544333333455566666666666


Q ss_pred             cccccCc-ccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchh
Q 042875          239 AITELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRS  317 (432)
Q Consensus       239 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  317 (432)
                      .++.++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+..++.                        .
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------~  151 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK------------------------G  151 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------T
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH------------------------h
Confidence            5554442 23455555666665555444444444455555555555554443332                        2


Q ss_pred             hhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCC
Q 042875          318 LLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~  381 (432)
                      .+..+++|+.|++++|.+..++. .+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            23344555555555555555333 24455555555555555554443 244555555555555553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=2e-19  Score=160.83  Aligned_cols=202  Identities=20%  Similarity=0.179  Sum_probs=174.1

Q ss_pred             cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCcc
Q 042875          175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLE  254 (432)
Q Consensus       175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~  254 (432)
                      .+.++++++.++++++.+. .+|..+  .++++.|++++|.+.+..+..+..+++|++|++++|.++.++.. ..+++|+
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~   80 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG   80 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence            3567889999999997654 455544  37899999999988877788899999999999999999977654 7899999


Q ss_pred             EEeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeecc
Q 042875          255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC  333 (432)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (432)
                      .|++++|.+. .+|..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+. .++...+..+++|+.|++++|
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCC
Confidence            9999998765 67777889999999999999999776 56888999999999999855 455556678899999999999


Q ss_pred             CCCCCchh-hhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC
Q 042875          334 AVMEIPQE-IAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML  382 (432)
Q Consensus       334 ~~~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~  382 (432)
                      +++.+|.. +..+++|+.|++++|+++.+|..+...++|+.+++++|+..
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            99997765 57799999999999999999999999999999999999864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=3.5e-21  Score=176.73  Aligned_cols=228  Identities=18%  Similarity=0.236  Sum_probs=137.5

Q ss_pred             CCccEEEecccccccccccccCCCCCCEEeecccccccc-ccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875          157 GKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKR-ISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL  235 (432)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  235 (432)
                      .+++.+++.++.+...+..+..+++|++|++++|.+... ++..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            345555555555554444555677888888888776544 6666777788888888887766666667777778888888


Q ss_pred             ccc-ccc--ccCcccCCCCCccEEeecCC-CCCCc-cccccCCcc-ccccccccccc--cc--ccCccccCCCCCcEEec
Q 042875          236 DGT-AIT--ELPSSFENLPGLEELFVSDC-SKLDK-LPDNIGNLE-SLRHISAAGSA--IS--QLPSSVADSNALLILDF  305 (432)
Q Consensus       236 ~~~-~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l  305 (432)
                      ++| .++  .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|.  +.  .++..+..+++|++|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            777 566  35555666777777777777 54432 344455666 77777777763  32  44555566677777777


Q ss_pred             cCCCCCC-CCchhhhcCCCCccEEEeeccC-CCC-CchhhhcCCCCCEEEeeCCCCcccChhccCC-CCCCeeeccCCCC
Q 042875          306 SRCKGLV-SLPRSLLLGLSSLGLLYIMNCA-VME-IPQEIAYLSSLKSLDLRGNNFESLPASIKQL-SRLCSLDLRRCNM  381 (432)
Q Consensus       306 ~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l-~~L~~L~l~~~~~  381 (432)
                      ++|...+ ..+. .+..+++|+.|++++|. +.. ....++.+++|+.|++++| ++.  ..+..+ ..++.|++++|.+
T Consensus       230 ~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l  305 (336)
T 2ast_B          230 SDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHF  305 (336)
T ss_dssp             TTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCS
T ss_pred             CCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccC
Confidence            7766332 2232 23455667777777664 222 2224556677777777766 331  111222 2344555666665


Q ss_pred             CcccCCC
Q 042875          382 LQSLPAL  388 (432)
Q Consensus       382 ~~~~~~~  388 (432)
                      .+..|..
T Consensus       306 ~~~~~~~  312 (336)
T 2ast_B          306 TTIARPT  312 (336)
T ss_dssp             CCTTCSS
T ss_pred             ccccCCc
Confidence            5555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=7.2e-21  Score=174.59  Aligned_cols=251  Identities=17%  Similarity=0.204  Sum_probs=157.0

Q ss_pred             CceeeeeccccccccCCCcccccCCcccCc--ccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCcc
Q 042875           83 NLVELNLRFSKVEQPWEGEKACVPSSIQNF--KYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKIT  160 (432)
Q Consensus        83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~  160 (432)
                      .++.++++++.+..          ..+..+  ++++.++++++...+..+....+++|++|++++|.+...         
T Consensus        48 ~~~~l~l~~~~~~~----------~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~---------  108 (336)
T 2ast_B           48 LWQTLDLTGKNLHP----------DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---------  108 (336)
T ss_dssp             TSSEEECTTCBCCH----------HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---------
T ss_pred             hheeeccccccCCH----------HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---------
Confidence            46778887776542          224555  778888888877766666667778888888887764421         


Q ss_pred             EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCcc-Ccc-cchHhhhcCCCCCeeeeccc
Q 042875          161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL-NLE-RFPEILEKMEHLKRINLDGT  238 (432)
Q Consensus       161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~l~~L~~L~l~~~  238 (432)
                                .++..+..+++|++|++++|.+....+..+..+++|+.|++++|. +.+ .++..+..+++|++|++++|
T Consensus       109 ----------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          109 ----------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ----------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             ----------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence                      134445566677777777766555555566667777777777763 332 24555666777777777776


Q ss_pred             -cccc--cCcccCCCC-CccEEeecCCC--CC-CccccccCCccccccccccccc-cc-ccCccccCCCCCcEEeccCCC
Q 042875          239 -AITE--LPSSFENLP-GLEELFVSDCS--KL-DKLPDNIGNLESLRHISAAGSA-IS-QLPSSVADSNALLILDFSRCK  309 (432)
Q Consensus       239 -~~~~--~~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~  309 (432)
                       .++.  ++..+..++ +|++|++++|.  +. ..++..+..+++|++|++++|. +. ..+..+..+++|++|++++|.
T Consensus       179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence             6662  455556666 77777777763  22 3344445566777777777776 43 445566777888888888875


Q ss_pred             CCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcc-cChhc
Q 042875          310 GLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFES-LPASI  365 (432)
Q Consensus       310 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~-l~~~~  365 (432)
                      ...+.....+..+++|+.|++++| +.. ....+.  ..++.|++++|.++. .|..+
T Consensus       259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          259 DIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred             CCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence            333332223456788888888888 443 222222  235555688888884 44443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=6e-20  Score=159.80  Aligned_cols=196  Identities=16%  Similarity=0.148  Sum_probs=109.8

Q ss_pred             CccEEEecCccCcccchHhhhcCCCCCeeeecccc-ccccCc-ccCCCCCccEEeecC-CCCCCccccccCCcccccccc
Q 042875          205 SLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA-ITELPS-SFENLPGLEELFVSD-CSKLDKLPDNIGNLESLRHIS  281 (432)
Q Consensus       205 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~  281 (432)
                      +++.|++++|.+.+..+..+..+++|++|++++|. ++.++. .+..+++|++|++++ |.+....+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            34444444443333333334444455555555543 443332 344555555555554 443333333455566666666


Q ss_pred             cccccccccCccccCCCCCc---EEeccCCCCCCCCchhhhcCCCCcc-EEEeeccCCCCCchhhhcCCCCCEEEeeCCC
Q 042875          282 AAGSAISQLPSSVADSNALL---ILDFSRCKGLVSLPRSLLLGLSSLG-LLYIMNCAVMEIPQEIAYLSSLKSLDLRGNN  357 (432)
Q Consensus       282 l~~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  357 (432)
                      +++|.+..+|. +..+++|+   +|++++|.....++...+..+++|+ .|++++|.+..+|......++|+.|++++|+
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~  190 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK  190 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence            66666655554 55555665   7777777334445554455677777 7777777777766544344677777777774


Q ss_pred             -CcccC-hhccCC-CCCCeeeccCCCCCcccCCCCCCccEEeccCCC
Q 042875          358 -FESLP-ASIKQL-SRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCN  401 (432)
Q Consensus       358 -l~~l~-~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~  401 (432)
                       ++.++ ..+..+ ++|++|++++|++.+..+..+.+|+.|++.++.
T Consensus       191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW  237 (239)
T ss_dssp             TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred             CcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence             76554 345666 777777777766543323345666666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=1.7e-19  Score=160.50  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=23.2

Q ss_pred             CccEEEeeccCCCCCchh-hhcCCCCCEEEeeCCCCc
Q 042875          324 SLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~  359 (432)
                      +|+.|++++|.++.++.. +..+++|+.|++++|.++
T Consensus       201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            566666666666665443 456677777777777665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1.2e-21  Score=183.31  Aligned_cols=242  Identities=14%  Similarity=0.105  Sum_probs=128.2

Q ss_pred             cCCcccCcccCceEeccCCccCCc----CC-CCCCCCCceEEEecCcccc---cccCCCCCCccEEEecccccccccccc
Q 042875          105 VPSSIQNFKYLSALSFEGCKSLRS----FP-SNLHFVCPVTINFSYCVTL---IEFPQISGKITRLYLDQSAIEEVPSSI  176 (432)
Q Consensus       105 ~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~  176 (432)
                      ++..+..+++|+.|++++|.....    ++ .+..+++|++|++++|...   ..+|..+             ..+...+
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~-------------~~l~~~l   90 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL-------------RLLLQAL   90 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH-------------HHHHHHH
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH-------------HHHHHHH
Confidence            344455556666666666544432    11 2334556666666554221   1111111             2222344


Q ss_pred             cCCCCCCEEeeccccccc----cccchhcCCCCccEEEecCccCcccch----HhhhcC---------CCCCeeeecccc
Q 042875          177 ECLTDLEVLDLRDCKRLK----RISTRFCKLRSLVDLFVNGCLNLERFP----EILEKM---------EHLKRINLDGTA  239 (432)
Q Consensus       177 ~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l---------~~L~~L~l~~~~  239 (432)
                      ..+++|++|++++|.+..    .++..+..+++|+.|++++|.+....+    ..+..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            566777777777776655    355556667777777777766543322    223233         677777777766


Q ss_pred             cc--ccC---cccCCCCCccEEeecCCCCCC-----ccccccCCcccccccccccccc-----cccCccccCCCCCcEEe
Q 042875          240 IT--ELP---SSFENLPGLEELFVSDCSKLD-----KLPDNIGNLESLRHISAAGSAI-----SQLPSSVADSNALLILD  304 (432)
Q Consensus       240 ~~--~~~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~-----~~~~~~~~~~~~L~~L~  304 (432)
                      ++  .++   ..+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.+     ..++..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            65  222   344556667777777665542     1222455566666666666665     23444555566666666


Q ss_pred             ccCCCCCCC----Cchhhh-cCCCCccEEEeeccCCCC-----Cchhh-hcCCCCCEEEeeCCCCc
Q 042875          305 FSRCKGLVS----LPRSLL-LGLSSLGLLYIMNCAVME-----IPQEI-AYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       305 l~~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~~L~~L~l~~n~l~  359 (432)
                      +++|.+...    ++..+. ..+++|+.|++++|.++.     +|..+ ..+++|+.|++++|.++
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            666654332    111110 125566666666666655     55444 44566666666666655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=1e-19  Score=164.73  Aligned_cols=201  Identities=17%  Similarity=0.161  Sum_probs=131.6

Q ss_pred             CCCCCEEeeccccccccccchh--cCCCCccEEEecCccCcccch----HhhhcCCCCCeeeeccccccccC-cccCCCC
Q 042875          179 LTDLEVLDLRDCKRLKRISTRF--CKLRSLVDLFVNGCLNLERFP----EILEKMEHLKRINLDGTAITELP-SSFENLP  251 (432)
Q Consensus       179 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~  251 (432)
                      +++|++|++++|.+.+..+..+  ..+++|+.|++++|.+.+..+    ..+..+++|++|++++|.++.++ ..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3557888888877776666665  677788888888777665432    23346778888888888887544 5667788


Q ss_pred             CccEEeecCCCCCCc--c--ccccCCcccccccccccccccccCc----cccCCCCCcEEeccCCCCCCCCchhhh--cC
Q 042875          252 GLEELFVSDCSKLDK--L--PDNIGNLESLRHISAAGSAISQLPS----SVADSNALLILDFSRCKGLVSLPRSLL--LG  321 (432)
Q Consensus       252 ~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~  321 (432)
                      +|++|++++|.+.+.  +  +..+..+++|++|++++|.+..++.    .+..+++|++|++++|.+.+..|....  ..
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            888888888775542  2  1223567778888888877764433    235567777777777775554443221  12


Q ss_pred             CCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC
Q 042875          322 LSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML  382 (432)
Q Consensus       322 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~  382 (432)
                      +++|++|++++|.++.+|..+.  ++|+.|++++|+++.+|. +..+++|++|++++|++.
T Consensus       250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred             cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence            3577777777777777665543  677777777777776644 456677777777776653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=6e-19  Score=159.32  Aligned_cols=176  Identities=20%  Similarity=0.285  Sum_probs=96.1

Q ss_pred             cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCcc
Q 042875          175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLE  254 (432)
Q Consensus       175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~  254 (432)
                      .+..+++|+.|++++|.+... +. +..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.++.++. +..+++|+
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  132 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ  132 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred             hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence            355566666666666654332 22 5566666666666655433 22 45566666666666666665443 55666666


Q ss_pred             EEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccC
Q 042875          255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCA  334 (432)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  334 (432)
                      .|++++|.+.+..+  +..+++|++|++++|.+..++. +..+++|++|++++|...+. +.  +..+++|+.|++++|.
T Consensus       133 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI-SP--LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECTTSC
T ss_pred             EEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC-hh--hcCCCCCCEEEccCCc
Confidence            66666665443222  4455566666666665554433 45555555555555553322 21  3345555555655555


Q ss_pred             CCCCchhhhcCCCCCEEEeeCCCCcccC
Q 042875          335 VMEIPQEIAYLSSLKSLDLRGNNFESLP  362 (432)
Q Consensus       335 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~  362 (432)
                      +..++. +..+++|+.|++++|.++..|
T Consensus       207 l~~~~~-l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          207 ISDVSP-LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CCBCGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred             cCcccc-ccCCCCCCEEEccCCeeecCC
Confidence            555442 455555666666655555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.8e-18  Score=153.30  Aligned_cols=88  Identities=24%  Similarity=0.275  Sum_probs=40.2

Q ss_pred             ccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCc-ccCCCCCcc
Q 042875          176 IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLE  254 (432)
Q Consensus       176 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~  254 (432)
                      +..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++.++. .+..+++|+
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence            3445555555555554433333334445555555555544433333334444455555555544443332 233444444


Q ss_pred             EEeecCCCC
Q 042875          255 ELFVSDCSK  263 (432)
Q Consensus       255 ~L~l~~~~~  263 (432)
                      .|++++|++
T Consensus       209 ~L~l~~N~~  217 (270)
T 2o6q_A          209 MLQLQENPW  217 (270)
T ss_dssp             EEECCSSCB
T ss_pred             EEEecCCCe
Confidence            444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=164.34  Aligned_cols=218  Identities=15%  Similarity=0.103  Sum_probs=123.1

Q ss_pred             CCCEEeeccccccccc-cc--hhcCCCCccEEEecCccCcccchHhh--hcCCCCCeeeecccccccc-C----cccCCC
Q 042875          181 DLEVLDLRDCKRLKRI-ST--RFCKLRSLVDLFVNGCLNLERFPEIL--EKMEHLKRINLDGTAITEL-P----SSFENL  250 (432)
Q Consensus       181 ~L~~L~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~-~----~~~~~l  250 (432)
                      .++.+.+.++...... ..  .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.++.. +    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            4666677665543211 11  12234568888888777766666655  6777788888887777632 1    223456


Q ss_pred             CCccEEeecCCCCCCccccccCCcccccccccccccccc---c--CccccCCCCCcEEeccCCCCCC--CCchhhhcCCC
Q 042875          251 PGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ---L--PSSVADSNALLILDFSRCKGLV--SLPRSLLLGLS  323 (432)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~--~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~  323 (432)
                      ++|++|++++|.+....+..+..+++|++|++++|.+..   +  ...+..+++|++|++++|.+..  ..+...+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            777777777777666555666677777777777776531   2  1223455666666666665421  11111233455


Q ss_pred             CccEEEeeccCCCCC-chhhhcC---CCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCc-ccCCCCCCccEEecc
Q 042875          324 SLGLLYIMNCAVMEI-PQEIAYL---SSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ-SLPALPLCLKYLHLT  398 (432)
Q Consensus       324 ~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~L~~L~l~  398 (432)
                      +|++|++++|.+... |..+..+   ++|++|++++|+++.+|..+.  ++|++|++++|++.+ ..+..+++|+.|+++
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~  302 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD  302 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence            666666666666553 4444443   466666666666665555442  566666666665443 222333455555555


Q ss_pred             CC
Q 042875          399 GC  400 (432)
Q Consensus       399 ~c  400 (432)
                      +|
T Consensus       303 ~N  304 (310)
T 4glp_A          303 GN  304 (310)
T ss_dssp             ST
T ss_pred             CC
Confidence            54

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=6.9e-19  Score=158.91  Aligned_cols=194  Identities=17%  Similarity=0.241  Sum_probs=161.7

Q ss_pred             cCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEE
Q 042875          177 ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEEL  256 (432)
Q Consensus       177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L  256 (432)
                      ..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+. +. +..+++|++|++++|.++.++ .+..+++|+.|
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence            346789999999987544 34 578899999999999876544 44 889999999999999998775 68889999999


Q ss_pred             eecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCC
Q 042875          257 FVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVM  336 (432)
Q Consensus       257 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (432)
                      ++++|.+.+ ++. +..+++|++|++++|.+..++. +..+++|++|++++|.+.+ ++.  +..+++|+.|++++|.+.
T Consensus       113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCccC
Confidence            999998765 333 7889999999999999987665 7888999999999997554 333  568899999999999999


Q ss_pred             CCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCc
Q 042875          337 EIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       337 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~  383 (432)
                      .++. +..+++|+.|++++|+++.+++ +..+++|++|++++|++..
T Consensus       187 ~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             cChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence            8775 7889999999999999998774 7899999999999988633

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=4.5e-21  Score=179.32  Aligned_cols=63  Identities=13%  Similarity=0.133  Sum_probs=29.4

Q ss_pred             CCCCccEEEeeccCCC-----CCchhhhcCCCCCEEEeeCCCCcc-----cChhcc--CCCCCCeeeccCCCCCc
Q 042875          321 GLSSLGLLYIMNCAVM-----EIPQEIAYLSSLKSLDLRGNNFES-----LPASIK--QLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       321 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~-----l~~~~~--~l~~L~~L~l~~~~~~~  383 (432)
                      .+++|+.|++++|.++     .+|..+..+++|+.|++++|.++.     ++..+.  .+++|++|++++|.+..
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            3445555555555542     144444455555555555555441     233332  24555555555554433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.78  E-value=2.9e-20  Score=172.17  Aligned_cols=36  Identities=14%  Similarity=-0.043  Sum_probs=15.4

Q ss_pred             CCcEEeccCCCCCCCCch---hhhcCCCCccEEEeeccC
Q 042875          299 ALLILDFSRCKGLVSLPR---SLLLGLSSLGLLYIMNCA  334 (432)
Q Consensus       299 ~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~  334 (432)
                      +|++|++++|.+......   ..+..+++|+.|++++|.
T Consensus       226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            455555555543332221   112334455555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.78  E-value=9.6e-20  Score=168.64  Aligned_cols=210  Identities=13%  Similarity=0.093  Sum_probs=122.2

Q ss_pred             cccCCC-CCCEEeeccccccccccchhcCC-----CCccEEEecCccCcccchHh----hhcC-CCCCeeeecccccccc
Q 042875          175 SIECLT-DLEVLDLRDCKRLKRISTRFCKL-----RSLVDLFVNGCLNLERFPEI----LEKM-EHLKRINLDGTAITEL  243 (432)
Q Consensus       175 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~  243 (432)
                      .+..++ +|++|++++|.+....+..+..+     ++|++|++++|.+.+..+..    +..+ ++|++|++++|.++..
T Consensus        45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            344444 55555555555544333333332     55666666665544433332    2223 5666666666666533


Q ss_pred             Cc-----ccCC-CCCccEEeecCCCCCCc----cccccCCcc-cccccccccccccccC-----ccccCC-CCCcEEecc
Q 042875          244 PS-----SFEN-LPGLEELFVSDCSKLDK----LPDNIGNLE-SLRHISAAGSAISQLP-----SSVADS-NALLILDFS  306 (432)
Q Consensus       244 ~~-----~~~~-l~~L~~L~l~~~~~~~~----~~~~~~~l~-~L~~L~l~~~~~~~~~-----~~~~~~-~~L~~L~l~  306 (432)
                      +.     .+.. .++|++|++++|.+.+.    ++..+...+ +|++|++++|.+....     ..+..+ ++|++|+++
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence            21     2333 24666666666655432    222233333 6777777777665332     234445 478888888


Q ss_pred             CCCCCCC----CchhhhcCCCCccEEEeeccCCCCCc-----hhhhcCCCCCEEEeeCCCCc--------ccChhccCCC
Q 042875          307 RCKGLVS----LPRSLLLGLSSLGLLYIMNCAVMEIP-----QEIAYLSSLKSLDLRGNNFE--------SLPASIKQLS  369 (432)
Q Consensus       307 ~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~n~l~--------~l~~~~~~l~  369 (432)
                      +|.+...    ++.......++|++|++++|.++..+     ..+..+++|+.|++++|.+.        .++..+..++
T Consensus       205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~  284 (362)
T 3goz_A          205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ  284 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred             CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence            8875442    22222223468999999999988733     33467788999999999743        2334566788


Q ss_pred             CCCeeeccCCCCCcc
Q 042875          370 RLCSLDLRRCNMLQS  384 (432)
Q Consensus       370 ~L~~L~l~~~~~~~~  384 (432)
                      +|++|++++|++...
T Consensus       285 ~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          285 KIILVDKNGKEIHPS  299 (362)
T ss_dssp             EEEEECTTSCBCCGG
T ss_pred             ceEEEecCCCcCCCc
Confidence            889999999887554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=1.4e-17  Score=153.29  Aligned_cols=233  Identities=19%  Similarity=0.183  Sum_probs=155.7

Q ss_pred             EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccch-HhhhcCCCCCee-eeccc
Q 042875          161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFP-EILEKMEHLKRI-NLDGT  238 (432)
Q Consensus       161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L-~l~~~  238 (432)
                      .++.++++++++|..+  .+++++|++++|++...-+.+|.++++|++|++++|.+.+.++ .++..+++++++ .+.+|
T Consensus        13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            4455556667777665  3577888888877655444567778888888888877666554 345677777654 45567


Q ss_pred             ccccc-CcccCCCCCccEEeecCCCCCCccccccCCccccccccccc-ccccccCc-cccCC-CCCcEEeccCCCCCCCC
Q 042875          239 AITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAG-SAISQLPS-SVADS-NALLILDFSRCKGLVSL  314 (432)
Q Consensus       239 ~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~  314 (432)
                      +++.+ +..+..+++|+.|++++|.+....+..+....++..+++.+ +.+..++. .+..+ ..++.|++++|.+. .+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i  169 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI  169 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CC
Confidence            88866 45678889999999998877665554555566677777755 35554443 23333 45777888887643 34


Q ss_pred             chhhhcCCCCccEEEeec-cCCCCCch-hhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC--CCC
Q 042875          315 PRSLLLGLSSLGLLYIMN-CAVMEIPQ-EIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA--LPL  390 (432)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~  390 (432)
                      +...+ ...+++++++.+ |.++.+|. .+..+++|++|++++|+++.+|..  .+.+|+.|.+.++...+.+|.  .++
T Consensus       170 ~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~  246 (350)
T 4ay9_X          170 HNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLV  246 (350)
T ss_dssp             CTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCC
T ss_pred             Chhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCc
Confidence            44433 345677787764 56666665 357778888888888888877753  366777777777777777773  346


Q ss_pred             CccEEeccC
Q 042875          391 CLKYLHLTG  399 (432)
Q Consensus       391 ~L~~L~l~~  399 (432)
                      +|+.+++.+
T Consensus       247 ~L~~l~l~~  255 (350)
T 4ay9_X          247 ALMEASLTY  255 (350)
T ss_dssp             SCCEEECSC
T ss_pred             ChhhCcCCC
Confidence            777777754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=3.8e-17  Score=150.35  Aligned_cols=238  Identities=18%  Similarity=0.187  Sum_probs=150.7

Q ss_pred             ceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC--CCCCCCCceE
Q 042875           63 RYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVT  140 (432)
Q Consensus        63 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~  140 (432)
                      +.++.+++.++.+|..+ .+++++|++++|+++.+..       ..|..+++|++|++++|...+.++  .+.+++++++
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~-------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQK-------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECT-------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCH-------HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence            34555566666666554 3567777777777765321       236777777777777776655544  2344555544


Q ss_pred             EEecCcccccccCCCCCCccEEEecccccccc-cccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCccc
Q 042875          141 INFSYCVTLIEFPQISGKITRLYLDQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER  219 (432)
Q Consensus       141 L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  219 (432)
                      +.+..+                    |.+..+ +..+..+++|++|++++|.+....+..+....++..+++.++.....
T Consensus        84 ~l~~~~--------------------N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X           84 IRIEKA--------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             EEEEEE--------------------TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred             hhcccC--------------------CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence            333222                    222333 34566778888888888776555444455566777777766444443


Q ss_pred             ch-HhhhcC-CCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCcccc-ccCCcccccccccccccccccCccccC
Q 042875          220 FP-EILEKM-EHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPD-NIGNLESLRHISAAGSAISQLPSSVAD  296 (432)
Q Consensus       220 ~~-~~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~  296 (432)
                      ++ ..+..+ ..++.|++++|+++.++......++++.+.+.+++....+|. .+..+++|++|++++|.+..+|..  .
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~  221 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--G  221 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--S
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--h
Confidence            33 334444 357788888888888887777778888998887666666664 467888888888888888877653  3


Q ss_pred             CCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeec
Q 042875          297 SNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMN  332 (432)
Q Consensus       297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  332 (432)
                      +.+|++|.+.++.....+|.  +..+++|+.+++.+
T Consensus       222 ~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLPT--LEKLVALMEASLTY  255 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred             hccchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence            55666776666555555553  34566666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=6.6e-17  Score=141.55  Aligned_cols=175  Identities=19%  Similarity=0.310  Sum_probs=97.0

Q ss_pred             ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875          159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT  238 (432)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  238 (432)
                      .+.+++.++.+..+|..+.  +.++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus        16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            3445555555566665543  46667777776665555555666666666666666555544445555666666666666


Q ss_pred             cccccCc-ccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchh
Q 042875          239 AITELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRS  317 (432)
Q Consensus       239 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  317 (432)
                      .++.++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+..+                        +..
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~  149 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI------------------------PAG  149 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------CTT
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc------------------------CHH
Confidence            5554432 334555555555555544433333333444444444444443333                        222


Q ss_pred             hhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCc
Q 042875          318 LLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~  359 (432)
                      .+..+++|+.|++++|.+..++. .+..+++|+.|++++|.++
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            34455666666666666666443 4566677777777777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=1.3e-16  Score=139.64  Aligned_cols=177  Identities=15%  Similarity=0.110  Sum_probs=95.4

Q ss_pred             hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC-CCCCCCce
Q 042875           61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS-NLHFVCPV  139 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~  139 (432)
                      +.++++++++.++.+|..+. +++++|++++|.++.+       .+..+..+++|++|++++|.+....+. +..+++|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   86 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATL-------SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG   86 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCcc-------CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence            44555555555555554443 4566666666665532       223355566666666666544433222 33455555


Q ss_pred             EEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCccc
Q 042875          140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER  219 (432)
Q Consensus       140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  219 (432)
                      +|++++|.+...                    .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus        87 ~L~L~~n~l~~~--------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  146 (251)
T 3m19_A           87 TLGLANNQLASL--------------------PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI  146 (251)
T ss_dssp             EEECTTSCCCCC--------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EEECCCCccccc--------------------ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence            555555443311                    112344555666666666655443334455566666666666655444


Q ss_pred             chHhhhcCCCCCeeeeccccccccCc-ccCCCCCccEEeecCCCCCC
Q 042875          220 FPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLD  265 (432)
Q Consensus       220 ~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~  265 (432)
                      .+..+..+++|++|++++|+++.++. .+..+++|+.|++++|++..
T Consensus       147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            44455666666666666666665443 45566667777777666544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=6.6e-17  Score=144.60  Aligned_cols=170  Identities=20%  Similarity=0.279  Sum_probs=79.4

Q ss_pred             CCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEe
Q 042875          178 CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELF  257 (432)
Q Consensus       178 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~  257 (432)
                      .+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.++.++. +..+++|++|+
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence            345566666666543322 2 24455556666665554433222  5555555555555555554432 45555555555


Q ss_pred             ecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC
Q 042875          258 VSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME  337 (432)
Q Consensus       258 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  337 (432)
                      +++|.+.+.  ..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+.+..+   +..+++|+.|++++|.++.
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCC
Confidence            555544331  2244445555555555544433 334444444444444444322211   2234444444444444444


Q ss_pred             CchhhhcCCCCCEEEeeCCCCc
Q 042875          338 IPQEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       338 ~~~~~~~~~~L~~L~l~~n~l~  359 (432)
                      ++. +..+++|+.|++++|.++
T Consensus       193 l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          193 LRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CGG-GTTCTTCSEEEEEEEEEE
T ss_pred             Chh-hccCCCCCEEECcCCccc
Confidence            332 344444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=7.5e-17  Score=156.21  Aligned_cols=177  Identities=22%  Similarity=0.257  Sum_probs=91.8

Q ss_pred             CccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc
Q 042875          158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG  237 (432)
Q Consensus       158 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  237 (432)
                      +++.|++.++.+..+|..+.  ++|+.|++++|.+. .+|   ..+++|+.|++++|.+.+ +|. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            56666666666666665442  56666666666544 334   235566666666655443 443 332  566666666


Q ss_pred             ccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchh
Q 042875          238 TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRS  317 (432)
Q Consensus       238 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  317 (432)
                      |.++.+|.   .+++|+.|++++|.+.+ +|.   .+++|++|++++|.+..+|. +.  ++|+.|++++|.+. .+|. 
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-
Confidence            66665554   45556666666655443 333   34555555555555555444 32  55555555555432 3332 


Q ss_pred             hhcCCCCc-------cEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc
Q 042875          318 LLLGLSSL-------GLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       318 ~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  359 (432)
                       +..  +|       +.|++++|.++.+|..+..+++|+.|++++|.++
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence             111  33       5555555555555544444555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=1.7e-16  Score=153.65  Aligned_cols=191  Identities=16%  Similarity=0.210  Sum_probs=109.2

Q ss_pred             cceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcc
Q 042875           30 NLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSI  109 (432)
Q Consensus        30 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  109 (432)
                      +|+.|++++|.+.       .+|..+.  + +|++|++++|.++.+|  ..+++|++|++++|.++.        +|. +
T Consensus        60 ~L~~L~Ls~n~L~-------~lp~~l~--~-~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--------ip~-l  118 (571)
T 3cvr_A           60 QFSELQLNRLNLS-------SLPDNLP--P-QITVLEITQNALISLP--ELPASLEYLDACDNRLST--------LPE-L  118 (571)
T ss_dssp             TCSEEECCSSCCS-------CCCSCCC--T-TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--------CCC-C
T ss_pred             CccEEEeCCCCCC-------ccCHhHc--C-CCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--------cch-h
Confidence            7777888777776       3455442  3 7788888887777777  446778888888777764        444 3


Q ss_pred             cCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeecc
Q 042875          110 QNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRD  189 (432)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  189 (432)
                      ..  +|+.|++++|.+.+ +|.  .+++|+.|++++|.+.. +|..+.+|+.|++++|.+..+|. +.  ++|+.|++++
T Consensus       119 ~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          119 PA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST  189 (571)
T ss_dssp             CT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS
T ss_pred             hc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC
Confidence            33  77777777766544 555  56677777777766553 44444555555555555555554 33  5555555555


Q ss_pred             ccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCcccc
Q 042875          190 CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPD  269 (432)
Q Consensus       190 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  269 (432)
                      |.+. .+|. +..  +|                 ....+.|+.|++++|.++.+|..+..+++|+.|++++|.+.+..|.
T Consensus       190 N~L~-~lp~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          190 NLLE-SLPA-VPV--RN-----------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             SCCS-SCCC-CC---------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             CCCC-chhh-HHH--hh-----------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            5433 3332 221  23                 0001112555555555555555555555566666666555554444


Q ss_pred             cc
Q 042875          270 NI  271 (432)
Q Consensus       270 ~~  271 (432)
                      .+
T Consensus       249 ~l  250 (571)
T 3cvr_A          249 SL  250 (571)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=2.1e-16  Score=141.28  Aligned_cols=173  Identities=23%  Similarity=0.295  Sum_probs=125.0

Q ss_pred             hcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccc
Q 042875          200 FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH  279 (432)
Q Consensus       200 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  279 (432)
                      ...+++|+.|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.+.. ++ .+..+++|++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  116 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            3456778888888765543 33 36677888888888888876665 7778888888888876554 33 3677788888


Q ss_pred             cccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc
Q 042875          280 ISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  359 (432)
                      |++++|.+..+ ..+..+++|+.|++++|.+...   ..+..+++|+.|++++|.+..++. +..+++|+.|++++|.++
T Consensus       117 L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          117 LSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence            88888877765 4566778888888888775443   234567788888888888877665 777788888888888887


Q ss_pred             ccChhccCCCCCCeeeccCCCCCc
Q 042875          360 SLPASIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       360 ~l~~~~~~l~~L~~L~l~~~~~~~  383 (432)
                      .++. +..+++|+.|++++|++..
T Consensus       192 ~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          192 DLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             CChh-hccCCCCCEEECcCCcccC
Confidence            7754 6778888888888877543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=1.4e-16  Score=156.04  Aligned_cols=171  Identities=16%  Similarity=0.172  Sum_probs=99.1

Q ss_pred             ccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCC
Q 042875           55 LEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLH  134 (432)
Q Consensus        55 l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  134 (432)
                      +..++ +|+.|+++++.+..++....+++|++|+|++|.++.        ++. +..+++|+.|++++|.+. .++.+..
T Consensus        39 ~~~L~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~--------~~~-l~~l~~L~~L~Ls~N~l~-~l~~l~~  107 (605)
T 1m9s_A           39 QNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--------IKP-LTNLKNLGWLFLDENKIK-DLSSLKD  107 (605)
T ss_dssp             HHHHT-TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC--------CGG-GGGCTTCCEEECCSSCCC-CCTTSTT
T ss_pred             hhcCC-CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC--------Chh-hccCCCCCEEECcCCCCC-CChhhcc
Confidence            34554 677777777777666655567777777777776654        222 667777777777776543 3455666


Q ss_pred             CCCceEEEecCcccccccC--CCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEec
Q 042875          135 FVCPVTINFSYCVTLIEFP--QISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVN  212 (432)
Q Consensus       135 ~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  212 (432)
                      +++|+.|++++|.+.. ++  ..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+....+  +..+++|+.|+++
T Consensus       108 l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS  183 (605)
T ss_dssp             CTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence            6677777776665442 11  1233444444444444444 345556666666666665544333  5556666666666


Q ss_pred             CccCcccchHhhhcCCCCCeeeeccccccc
Q 042875          213 GCLNLERFPEILEKMEHLKRINLDGTAITE  242 (432)
Q Consensus       213 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  242 (432)
                      +|.+.+ ++ .+..+++|+.|++++|.+..
T Consensus       184 ~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          184 KNHISD-LR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             SSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence            655443 22 35556666666666665553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=4.2e-16  Score=131.02  Aligned_cols=86  Identities=19%  Similarity=0.292  Sum_probs=45.1

Q ss_pred             cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCcc
Q 042875          175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLE  254 (432)
Q Consensus       175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~  254 (432)
                      .+..+++|++|++++|.+....+..+..+++|+.|++++|...+.++ .+..+++|++|++++|.++.++ .+..+++|+
T Consensus       107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~  184 (197)
T 4ezg_A          107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLN  184 (197)
T ss_dssp             CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred             hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence            34445555555555555544444455555555555555554333333 3555555556655555555444 445555555


Q ss_pred             EEeecCCC
Q 042875          255 ELFVSDCS  262 (432)
Q Consensus       255 ~L~l~~~~  262 (432)
                      .|++++|+
T Consensus       185 ~L~l~~N~  192 (197)
T 4ezg_A          185 QLYAFSQT  192 (197)
T ss_dssp             EEEECBC-
T ss_pred             EEEeeCcc
Confidence            55555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=3.4e-16  Score=131.55  Aligned_cols=150  Identities=18%  Similarity=0.274  Sum_probs=88.9

Q ss_pred             cCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc-cCccccCCCCCcEEe
Q 042875          226 KMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ-LPSSVADSNALLILD  304 (432)
Q Consensus       226 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~  304 (432)
                      .+++|++|+++++.++.++ .+..+++|++|++++|... .+ ..+..+++|++|++++|.+.. .+..+..+++|++|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            3445555555555555444 4555555555555555221 11 234555666666666665552 445555666666666


Q ss_pred             ccCCCCCCCCchhhhcCCCCccEEEeeccC-CCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCC
Q 042875          305 FSRCKGLVSLPRSLLLGLSSLGLLYIMNCA-VMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~  381 (432)
                      +++|.+.+..+. .+..+++|++|++++|. +..++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|++
T Consensus       119 Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHH-HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence            666664443333 24466777777777776 66665 4677777777777777777665 566777777777777764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=7.7e-16  Score=130.66  Aligned_cols=152  Identities=20%  Similarity=0.202  Sum_probs=70.7

Q ss_pred             CccEEeecCCCCCCccccccCCcccccccccccccccccCcc-ccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEe
Q 042875          252 GLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS-VADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYI  330 (432)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  330 (432)
                      ++++|++++|.+....+..+..+++|++|++++|.+..++.. +..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence            444444444444333333334444444444444444433322 344455555555554432 222222334555555555


Q ss_pred             eccCCCCCchh-hhcCCCCCEEEeeCCCCcccChh-ccCCCCCCeeeccCCCCCcccCCCCCCccEEeccCCCCccccCC
Q 042875          331 MNCAVMEIPQE-IAYLSSLKSLDLRGNNFESLPAS-IKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPE  408 (432)
Q Consensus       331 ~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  408 (432)
                      ++|.+..++.. +..+++|+.|++++|.++.++.. +..+++|++|++++|+....    ++.|++|+++.|..-..+|.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----TTTTHHHHHHHHHCTTTBBC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----CCCHHHHHHHHHhCCceeec
Confidence            55555553332 44555555555555555544432 45555555555555543322    22455555555443334443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=4.3e-16  Score=132.25  Aligned_cols=146  Identities=18%  Similarity=0.236  Sum_probs=83.0

Q ss_pred             EEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875          162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT  241 (432)
Q Consensus       162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  241 (432)
                      ++..++++..+|..+  .+++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.++
T Consensus        12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           12 VECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             EECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            344444445555444  346777777776655444444566667777777666555444444556666666666666666


Q ss_pred             ccCcc-cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCcc-ccCCCCCcEEeccCCC
Q 042875          242 ELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS-VADSNALLILDFSRCK  309 (432)
Q Consensus       242 ~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~  309 (432)
                      .++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+..++.. +..+++|++|++++|.
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            55433 45666666666666655544444455566666666666655544432 3445555555555553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=1.3e-15  Score=149.21  Aligned_cols=172  Identities=20%  Similarity=0.301  Sum_probs=100.0

Q ss_pred             cCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEE
Q 042875          177 ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEEL  256 (432)
Q Consensus       177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L  256 (432)
                      ..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+..++ .+..+++|+.|
T Consensus        40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred             hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence            445667777777765433 22 36667777777777765544332  666777777777777766654 46666677777


Q ss_pred             eecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCC
Q 042875          257 FVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVM  336 (432)
Q Consensus       257 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (432)
                      ++++|.+.. + ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.+..+   +..+++|+.|++++|.+.
T Consensus       115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCC
Confidence            777665543 2 2355566666666666665544 345555555555555555433222   334555555555555555


Q ss_pred             CCchhhhcCCCCCEEEeeCCCCcc
Q 042875          337 EIPQEIAYLSSLKSLDLRGNNFES  360 (432)
Q Consensus       337 ~~~~~~~~~~~L~~L~l~~n~l~~  360 (432)
                      .++ .+..+++|+.|+|++|.+..
T Consensus       189 ~l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          189 DLR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             BCG-GGTTCTTCSEEECCSEEEEC
T ss_pred             CCh-HHccCCCCCEEEccCCcCcC
Confidence            543 34555555555555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=3.8e-15  Score=128.25  Aligned_cols=152  Identities=20%  Similarity=0.273  Sum_probs=120.0

Q ss_pred             CCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCC
Q 042875          230 LKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRC  308 (432)
Q Consensus       230 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  308 (432)
                      .+.++.+++.++.+|..+  .++++.|++++|.+.+..+..+..+++|++|++++|.+..++. .+..+++|+.|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            456677777777776544  3778888888887777767777788888888888888876664 3577888888888888


Q ss_pred             CCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCCCcc
Q 042875          309 KGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQS  384 (432)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~  384 (432)
                      .+. .++...+..+++|+.|++++|.+..+|..+..+++|+.|++++|+++.++. .+..+++|++|++++|++...
T Consensus        99 ~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           99 QLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCC-ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            744 455555667889999999999999999888999999999999999997764 578889999999999986544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=5e-16  Score=136.62  Aligned_cols=147  Identities=23%  Similarity=0.315  Sum_probs=71.5

Q ss_pred             hcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEe
Q 042875          225 EKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILD  304 (432)
Q Consensus       225 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  304 (432)
                      ..+++|++|+++++.++.++ .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+..++....  ++|+.|+
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~  112 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF  112 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred             hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence            33444444444444444433 34444444444444443332221  4444445555555444444333222  4555555


Q ss_pred             ccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCC
Q 042875          305 FSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~  381 (432)
                      +++|.+.+ ++  .+..+++|+.|++++|.++.++ .++.+++|+.|++++|+++.+ ..+..+++|++|++++|++
T Consensus       113 L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          113 LDNNELRD-TD--SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             CCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred             ccCCccCC-Ch--hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence            55554332 22  1334555666666665555554 355556666666666655544 4455556666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=4.9e-15  Score=126.65  Aligned_cols=147  Identities=22%  Similarity=0.329  Sum_probs=82.4

Q ss_pred             eeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCC
Q 042875          232 RINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKG  310 (432)
Q Consensus       232 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~  310 (432)
                      .++.+++.++.+|..+.  ++++.|++++|.+....+..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            34444444444443322  3455555555544443333445555555555555555533 34455555666666665553


Q ss_pred             CCCCchhhhcCCCCccEEEeeccCCCCC-chhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCC
Q 042875          311 LVSLPRSLLLGLSSLGLLYIMNCAVMEI-PQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~  381 (432)
                      . .++...+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|++|++++|++
T Consensus        93 ~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           93 T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             C-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            3 34444445566677777777766663 4456666777777777777775543 356667777777777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=4.3e-17  Score=158.66  Aligned_cols=179  Identities=18%  Similarity=0.155  Sum_probs=97.0

Q ss_pred             cCCCCCCEEeeccccccccccchhcCCCCccEEEecCcc-------------CcccchHhhhcCCCCCeee-eccccccc
Q 042875          177 ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL-------------NLERFPEILEKMEHLKRIN-LDGTAITE  242 (432)
Q Consensus       177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~~~  242 (432)
                      ..+++|+.|++++|.+ +.+|..+..+++|+.|+++++.             ..+..|..+..+++|+.|+ ++.+.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            5567778888887765 4567777778888888776653             3344556666666777666 44443321


Q ss_pred             cCcc------cCC--CCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCC
Q 042875          243 LPSS------FEN--LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSL  314 (432)
Q Consensus       243 ~~~~------~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  314 (432)
                      ++..      +..  ...|+.|++++|.+.+ +|. +..+++|+.|++++|.+..+|..++.+++|+.|++++|.+.+ +
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-l  501 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-V  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-C
Confidence            1100      000  0135666666655443 443 555566666666666555555555555555555555554332 3


Q ss_pred             chhhhcCCCCccEEEeeccCCCCC--chhhhcCCCCCEEEeeCCCCccc
Q 042875          315 PRSLLLGLSSLGLLYIMNCAVMEI--PQEIAYLSSLKSLDLRGNNFESL  361 (432)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~l  361 (432)
                      |  .+..+++|+.|++++|.++.+  |..++.+++|+.|++++|.++.+
T Consensus       502 p--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          502 D--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             G--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             c--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            3  233445555555555555543  44455555555555555554433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=9e-15  Score=125.00  Aligned_cols=150  Identities=17%  Similarity=0.227  Sum_probs=110.0

Q ss_pred             EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccc
Q 042875          161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI  240 (432)
Q Consensus       161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  240 (432)
                      .+++.++++..+|..+.  ++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            45555566666666554  5778888888776665555677788888888888777666677778888888888888888


Q ss_pred             cccCcc-cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCCC
Q 042875          241 TELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGLV  312 (432)
Q Consensus       241 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~  312 (432)
                      +.++.. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|++..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            876654 4678888888888887777667777778888888888888775554 46667777777777776443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.58  E-value=6.9e-15  Score=129.33  Aligned_cols=172  Identities=17%  Similarity=0.200  Sum_probs=112.6

Q ss_pred             ccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccC
Q 042875           27 NMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVP  106 (432)
Q Consensus        27 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  106 (432)
                      .+.++..++++++.+.+       ++ .+..++ +|++|++++|.++.++....+++|++|++++|.++.        ++
T Consensus        17 ~l~~l~~l~l~~~~i~~-------~~-~~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~--------~~   79 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-------LV-SQKELS-GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--------LS   79 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-------EE-CHHHHT-TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CG
T ss_pred             HHHHHHHHHhcCCCccc-------cc-chhhcC-cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC--------Ch
Confidence            56677778888887763       33 456675 888888888888888755577888888888888764        33


Q ss_pred             CcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEe
Q 042875          107 SSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD  186 (432)
Q Consensus       107 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  186 (432)
                      . +..+++|+.|++++|...+ ++.... ++|++|++++|.                     +..++ .+..+++|+.|+
T Consensus        80 ~-l~~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~---------------------l~~~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           80 P-LKDLTKLEELSVNRNRLKN-LNGIPS-ACLSRLFLDNNE---------------------LRDTD-SLIHLKNLEILS  134 (263)
T ss_dssp             G-GTTCSSCCEEECCSSCCSC-CTTCCC-SSCCEEECCSSC---------------------CSBSG-GGTTCTTCCEEE
T ss_pred             h-hccCCCCCEEECCCCccCC-cCcccc-CcccEEEccCCc---------------------cCCCh-hhcCcccccEEE
Confidence            3 6777888888888765433 333333 555555555554                     33332 466677777777


Q ss_pred             eccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC
Q 042875          187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP  244 (432)
Q Consensus       187 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  244 (432)
                      +++|++.+. + .+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++..+
T Consensus       135 Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          135 IRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            777765443 2 466677777777777665544  44566677777777777666443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.58  E-value=2e-14  Score=122.86  Aligned_cols=151  Identities=16%  Similarity=0.138  Sum_probs=90.6

Q ss_pred             EEEecccccccccccccCCCCCCEEeecccccccccc-chhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875          161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA  239 (432)
Q Consensus       161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  239 (432)
                      .++++++.+..+|..+.  +.++.|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus        15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            44455555555555442  345666666666544422 335566666666666666555444556666666666666666


Q ss_pred             ccccCc-ccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCCC
Q 042875          240 ITELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLVS  313 (432)
Q Consensus       240 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~  313 (432)
                      ++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            665443 356666677777776666665566666666677777776666644 45566666666666666664443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1.9e-17  Score=161.19  Aligned_cols=186  Identities=16%  Similarity=0.181  Sum_probs=93.2

Q ss_pred             CCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccC-------------CcCC-CCCCCCCceEEE-e
Q 042875           79 FKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL-------------RSFP-SNLHFVCPVTIN-F  143 (432)
Q Consensus        79 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------------~~~~-~~~~~~~L~~L~-l  143 (432)
                      ..+++|+.|++++|.++.        +|..++++++|+.|++++|...             +..| .+..+++|+.|+ +
T Consensus       346 ~~~~~L~~L~Ls~n~L~~--------Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l  417 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV--------LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  417 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             ccCccceeccCChhhHHh--------hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence            367788889999988864        7788888888888888664311             1111 112233333333 2


Q ss_pred             cCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHh
Q 042875          144 SYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEI  223 (432)
Q Consensus       144 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  223 (432)
                      +.+.+        ..++.+.+.+|.+..++.     ..|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..
T Consensus       418 ~~n~~--------~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          418 RAAYL--------DDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             GHHHH--------HHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred             hhccc--------chhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchh
Confidence            22211        012222222222222221     135555555554333 333 455555555555554443 44445


Q ss_pred             hhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCcc-ccccCCcccccccccccccccc
Q 042875          224 LEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKL-PDNIGNLESLRHISAAGSAISQ  289 (432)
Q Consensus       224 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~  289 (432)
                      ++.+++|+.|++++|.++.+| .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+..
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          482 LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            555555555555555555544 4555555555555555444433 4444555555555555554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.57  E-value=2.9e-14  Score=122.66  Aligned_cols=149  Identities=22%  Similarity=0.274  Sum_probs=85.7

Q ss_pred             cEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875          160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA  239 (432)
Q Consensus       160 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  239 (432)
                      +.++..++++..+|..+.  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|+
T Consensus        22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            345555555566665443  567777777766665555666666667777776665543333445566666666666666


Q ss_pred             ccccCcc-cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCC
Q 042875          240 ITELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGL  311 (432)
Q Consensus       240 ~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  311 (432)
                      ++.++.. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            6655432 455666666666665544 445555555666666666655554432 3444555555555555433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.57  E-value=1.2e-14  Score=134.19  Aligned_cols=104  Identities=18%  Similarity=0.176  Sum_probs=45.1

Q ss_pred             ccEEEeccccccccccc-cc-CCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeec
Q 042875          159 ITRLYLDQSAIEEVPSS-IE-CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLD  236 (432)
Q Consensus       159 L~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  236 (432)
                      ++.|++++|.+..++.. +. .+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44455554444444332 22 44444444444444433333334444444444444444333333334444444444444


Q ss_pred             ccccccc-CcccCCCCCccEEeecCCC
Q 042875          237 GTAITEL-PSSFENLPGLEELFVSDCS  262 (432)
Q Consensus       237 ~~~~~~~-~~~~~~l~~L~~L~l~~~~  262 (432)
                      +|.++.+ +..+..+++|+.|++++|.
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCc
Confidence            4444432 2334444444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=5.3e-14  Score=120.18  Aligned_cols=130  Identities=16%  Similarity=0.196  Sum_probs=92.8

Q ss_pred             ccEEEeccccccccc--ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeec
Q 042875          159 ITRLYLDQSAIEEVP--SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLD  236 (432)
Q Consensus       159 L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  236 (432)
                      ++.|++++|.+..++  ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            445555555555542  236677778888888777666555567777788888888777766666667777888888888


Q ss_pred             ccccccc-CcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccc
Q 042875          237 GTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS  288 (432)
Q Consensus       237 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  288 (432)
                      +|.++.+ +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            8877755 556777778888888887777766777777788888888877665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=2.8e-14  Score=116.59  Aligned_cols=129  Identities=22%  Similarity=0.257  Sum_probs=81.4

Q ss_pred             CCccEEeecCCCCC-CccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875          251 PGLEELFVSDCSKL-DKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY  329 (432)
Q Consensus       251 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (432)
                      ++++.|++++|.+. +.+|..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+....+. .+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEEe
Confidence            55666666666554 34555555666666666666666544 4555566666666666665443333 233466777777


Q ss_pred             eeccCCCCCc--hhhhcCCCCCEEEeeCCCCcccCh----hccCCCCCCeeeccCCCC
Q 042875          330 IMNCAVMEIP--QEIAYLSSLKSLDLRGNNFESLPA----SIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       330 l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~~~~~  381 (432)
                      +++|.+..++  ..+..+++|+.|++++|.++.+|.    .+..+++|++|++++|..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            7777777654  556677777777777777776665    566777777777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=4.5e-14  Score=130.35  Aligned_cols=174  Identities=16%  Similarity=0.146  Sum_probs=109.7

Q ss_pred             cceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCccc-CcccCceEeccCCccCCcCC-CCCCCCCce
Q 042875           62 LRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQ-NFKYLSALSFEGCKSLRSFP-SNLHFVCPV  139 (432)
Q Consensus        62 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~  139 (432)
                      -+.++++++.++.+|..+ ...++.|++++|.++.+       .+..+. .+++|+.|++++|.+....+ .+..+++|+
T Consensus        20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l-------~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRL-------RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR   91 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEE-------CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCcc-------ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence            357788888888887654 24688888888888754       223355 77888888888876544333 345566666


Q ss_pred             EEEecCcccccccCCCCCCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc
Q 042875          140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE  218 (432)
Q Consensus       140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  218 (432)
                      +|++++|.+.                     .++ ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus        92 ~L~Ls~N~l~---------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           92 YLDLSSNHLH---------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             EEECCSSCCC---------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             EEECCCCcCC---------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            6666665433                     222 245667777777777777666656667777777777777766554


Q ss_pred             cchHhh---hcCCCCCeeeeccccccccCc-ccCCCCC--ccEEeecCCCCC
Q 042875          219 RFPEIL---EKMEHLKRINLDGTAITELPS-SFENLPG--LEELFVSDCSKL  264 (432)
Q Consensus       219 ~~~~~l---~~l~~L~~L~l~~~~~~~~~~-~~~~l~~--L~~L~l~~~~~~  264 (432)
                      ..+..+   ..+++|+.|++++|.++.++. .+..++.  ++.|++.+|++.
T Consensus       151 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            333333   456777777777777775552 3444444  356677766554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=2.9e-14  Score=116.45  Aligned_cols=135  Identities=20%  Similarity=0.196  Sum_probs=82.0

Q ss_pred             CCCCeeeecccccc--ccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc-cCccccCCCCCcEEe
Q 042875          228 EHLKRINLDGTAIT--ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ-LPSSVADSNALLILD  304 (432)
Q Consensus       228 ~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~  304 (432)
                      +++++|++++|.++  .+|..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+.. ++..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555554  4444445555555555555544332  344555566666666665554 444455566677777


Q ss_pred             ccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch----hhhcCCCCCEEEeeCCCCcccChh
Q 042875          305 FSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ----EIAYLSSLKSLDLRGNNFESLPAS  364 (432)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~l~~~  364 (432)
                      +++|.+.+......+..+++|+.|++++|.++.++.    .+..+++|+.|++++|.+.++|..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            766654332222335567788888888888877665    677888888888888888777653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=5.9e-14  Score=112.15  Aligned_cols=125  Identities=22%  Similarity=0.266  Sum_probs=76.1

Q ss_pred             CCccEEeecCCCCC-CccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875          251 PGLEELFVSDCSKL-DKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY  329 (432)
Q Consensus       251 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (432)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+.++. .+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEEE
Confidence            44555555555544 34454455555666666665555544 4455566666666666665443333 233466777777


Q ss_pred             eeccCCCCCc--hhhhcCCCCCEEEeeCCCCcccCh----hccCCCCCCeeecc
Q 042875          330 IMNCAVMEIP--QEIAYLSSLKSLDLRGNNFESLPA----SIKQLSRLCSLDLR  377 (432)
Q Consensus       330 l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~  377 (432)
                      +++|.++.++  ..++.+++|++|++++|.++.++.    .+..+++|++|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777776643  566777777777777777776654    56677777777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=7.5e-15  Score=147.38  Aligned_cols=119  Identities=19%  Similarity=0.207  Sum_probs=79.0

Q ss_pred             ccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcc
Q 042875          196 ISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLE  275 (432)
Q Consensus       196 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  275 (432)
                      .+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            3455666677777777776554 5555556677777777777777777766777777777777777665 5666677777


Q ss_pred             cccccccccccccccCccccCCCCCcEEeccCCCCCCCCch
Q 042875          276 SLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPR  316 (432)
Q Consensus       276 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  316 (432)
                      +|++|++++|.+..+|..++.+++|+.|++++|.+.+..+.
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence            77777777777777776677777777777777776554444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=2.9e-13  Score=123.25  Aligned_cols=258  Identities=12%  Similarity=0.087  Sum_probs=131.1

Q ss_pred             hhcc-cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC--C--------CCCceeeeeccc
Q 042875           24 AFTN-MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF--K--------PKNLVELNLRFS   92 (432)
Q Consensus        24 ~~~~-l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~--~--------~~~L~~L~l~~~   92 (432)
                      .+.. +++|+.|||++|++.......       +.++ .++.+.+..+   .+|...  +        |++|++|++.. 
T Consensus        43 ~l~~~l~~L~~LdLs~n~i~~~~~~~-------~~~~-~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-  110 (329)
T 3sb4_A           43 HLRDEFPSLKVLDISNAEIKMYSGKA-------GTYP-NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-  110 (329)
T ss_dssp             HHHHSCTTCCEEEEEEEEECCEEESS-------SSSG-GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-
T ss_pred             HHHHhhccCeEEecCcceeEEecCcc-------cccc-cccccccccc---ccCHHHhcccccccccccCCCcEEECCc-
Confidence            3444 677888888888876210111       1111 1222222222   233332  4        67777777776 


Q ss_pred             cccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccc---cccC----CCCCCcc-EEE
Q 042875           93 KVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTL---IEFP----QISGKIT-RLY  163 (432)
Q Consensus        93 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~----~~~~~L~-~L~  163 (432)
                      .++.+..+.       |..+++|+.+++.++....--+ .+..+.++..+........   ..+.    .....++ .+.
T Consensus       111 ~i~~I~~~a-------F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~  183 (329)
T 3sb4_A          111 KIKNIEDAA-------FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ  183 (329)
T ss_dssp             TCCEECTTT-------TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEE
T ss_pred             cccchhHHH-------hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEE
Confidence            665543333       6777777777777654432212 3444555655555442110   0000    0011222 122


Q ss_pred             ecccccccccc----cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875          164 LDQSAIEEVPS----SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA  239 (432)
Q Consensus       164 l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  239 (432)
                      +...  ..++.    ......+++.+.+.+.-...........+++|+.+++.+|.+......+|..+.+|+++++..+ 
T Consensus       184 ~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-  260 (329)
T 3sb4_A          184 VGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-  260 (329)
T ss_dssp             ECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-
T ss_pred             ecCC--CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-
Confidence            2211  11111    1112344555555543211111111123677777777776554444456667777777777766 


Q ss_pred             ccccC-cccCCCCCcc-EEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEe
Q 042875          240 ITELP-SSFENLPGLE-ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILD  304 (432)
Q Consensus       240 ~~~~~-~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~  304 (432)
                      ++.++ .+|..+++|+ .+.+.+ .....-+.++.++++|+.+++..+.+..++. .+..+++|+.+.
T Consensus       261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            55443 3566777777 777776 3433334567777777777777777765543 566677777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=2.6e-14  Score=130.25  Aligned_cols=55  Identities=18%  Similarity=0.027  Sum_probs=29.6

Q ss_pred             CCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeee
Q 042875          179 LTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRIN  234 (432)
Q Consensus       179 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  234 (432)
                      +++|+.+++.. .....-..+|.+|++|+.+++.++......+.+|..+.++..+.
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~  154 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP  154 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence            66666666666 44433344566666677776666554443444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=2e-13  Score=109.04  Aligned_cols=123  Identities=20%  Similarity=0.261  Sum_probs=72.9

Q ss_pred             CccEEEecccccc--cccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875          158 KITRLYLDQSAIE--EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL  235 (432)
Q Consensus       158 ~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  235 (432)
                      +++.|++.++.+.  .+|..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3444444444444  5555666677777777777765443  45666777777777777666556666666777777777


Q ss_pred             ccccccccC--cccCCCCCccEEeecCCCCCCccc---cccCCccccccccc
Q 042875          236 DGTAITELP--SSFENLPGLEELFVSDCSKLDKLP---DNIGNLESLRHISA  282 (432)
Q Consensus       236 ~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l  282 (432)
                      ++|.++.++  ..+..+++|++|++++|.+.+..+   ..+..+++|+.|++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            777666543  455566666666666665443322   23444455555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.43  E-value=4.5e-14  Score=141.71  Aligned_cols=155  Identities=21%  Similarity=0.269  Sum_probs=90.9

Q ss_pred             ccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhh
Q 042875          240 ITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLL  319 (432)
Q Consensus       240 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  319 (432)
                      +...+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.+..+|..++.+++|+.|+|++|.+. .+|.. +
T Consensus       213 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~  289 (727)
T 4b8c_D          213 MVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE-L  289 (727)
T ss_dssp             ---------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS-G
T ss_pred             eecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh-h
Confidence            3334455666677777777776654 4555555677777777777777777777777777777777777754 45544 4


Q ss_pred             cCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc-ccChhccCCC-CCCeeeccCCCCCcccCCCCCCccEEec
Q 042875          320 LGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLS-RLCSLDLRRCNMLQSLPALPLCLKYLHL  397 (432)
Q Consensus       320 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~L~~L~l  397 (432)
                      ..+++|+.|++++|.++.+|..++.+++|+.|+|++|.++ .+|..+.... .+..+++++|.+...+|.   .|+.|++
T Consensus       290 ~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l~l  366 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFIEI  366 (727)
T ss_dssp             GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C------
T ss_pred             cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---ccceeEe
Confidence            4667777777777777777777777788888888888777 3444443221 112356677766655553   4555555


Q ss_pred             cCC
Q 042875          398 TGC  400 (432)
Q Consensus       398 ~~c  400 (432)
                      .++
T Consensus       367 ~~n  369 (727)
T 4b8c_D          367 NTD  369 (727)
T ss_dssp             ---
T ss_pred             ecc
Confidence            554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=3e-13  Score=111.30  Aligned_cols=129  Identities=19%  Similarity=0.191  Sum_probs=79.7

Q ss_pred             CCCCccEEeecCCCCCCccccccCCc-ccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccE
Q 042875          249 NLPGLEELFVSDCSKLDKLPDNIGNL-ESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGL  327 (432)
Q Consensus       249 ~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  327 (432)
                      .+++++.|++++|.+.. ++. +..+ ++|+.|++++|.+..+ ..+..+++|++|++++|.+. .++...+..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence            44555555555554432 222 2222 3566666666655544 44555666666666666543 233333446677777


Q ss_pred             EEeeccCCCCCch--hhhcCCCCCEEEeeCCCCcccChh----ccCCCCCCeeeccCCCC
Q 042875          328 LYIMNCAVMEIPQ--EIAYLSSLKSLDLRGNNFESLPAS----IKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       328 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~l~~~----~~~l~~L~~L~l~~~~~  381 (432)
                      |++++|.+..+|.  .+..+++|+.|++++|.++.+|..    +..+++|+.|++++|..
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            7777777777665  667777888888888877777664    67777788777777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.39  E-value=1.9e-12  Score=108.04  Aligned_cols=119  Identities=23%  Similarity=0.260  Sum_probs=48.1

Q ss_pred             EEecccccccccccccCCCCCCEEeeccccccccccc-hhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccc
Q 042875          162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIST-RFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI  240 (432)
Q Consensus       162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  240 (432)
                      +++++++++.+|..+..  +++.|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|++
T Consensus        13 l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           13 VDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             EECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             EEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            33444444444443321  445555555443332221 234444444444444444433344444444444444444444


Q ss_pred             cccCc-ccCCCCCccEEeecCCCCCCccccccCCccccccccc
Q 042875          241 TELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISA  282 (432)
Q Consensus       241 ~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  282 (432)
                      +.++. .+..+++|++|++++|.+.+..|..+..+++|+++++
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            43222 2333444444444444333333333333333333333

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=6e-13  Score=109.47  Aligned_cols=129  Identities=19%  Similarity=0.194  Sum_probs=72.3

Q ss_pred             CCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccc-cCCCCCcEEecc
Q 042875          228 EHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV-ADSNALLILDFS  306 (432)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~  306 (432)
                      .+|++|++++|.++.++......++|+.|++++|.+.+.  ..+..+++|++|++++|.+..++..+ ..+++|++|+++
T Consensus        19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            344444444444443332222222455555555443332  23445555555555555555444333 556666666666


Q ss_pred             CCCCCCCCch-hhhcCCCCccEEEeeccCCCCCchh----hhcCCCCCEEEeeCCCCc
Q 042875          307 RCKGLVSLPR-SLLLGLSSLGLLYIMNCAVMEIPQE----IAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       307 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~n~l~  359 (432)
                      +|.+ +.++. ..+..+++|+.|++++|.+..+|..    +..+++|+.|++++|...
T Consensus        97 ~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           97 NNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             SCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            6654 33332 2344677788888888877776664    778888888888888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.32  E-value=1.9e-10  Score=107.35  Aligned_cols=312  Identities=11%  Similarity=0.066  Sum_probs=149.6

Q ss_pred             ecccCchhhcccccceeeeeccccccccccccccCCc-cccchhhhcceeecCCCCCCCCCCCC--CCCCceeeeecccc
Q 042875           17 CINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPN-GLEYLPEKLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSK   93 (432)
Q Consensus        17 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~l~~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~   93 (432)
                      +..+...+|.+|.+|+.+.+..+ +..       +.. .+..+. +|+.+++..+ ++.++...  ++.+|+.+.+..+ 
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~-------I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-  127 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VRE-------IGEFAFENCS-KLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-  127 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCE-------ECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccC-------cchhHhhCCC-CCcEEEeCCC-ceEccchhhcccccchhhcccCc-
Confidence            45566677778888887777532 432       222 344454 7777777543 44444443  6666766665433 


Q ss_pred             ccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEeccccccccc
Q 042875           94 VEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVP  173 (432)
Q Consensus        94 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  173 (432)
                      +..+...       .|..+..++.......... .-..+..|.+|+.+.+..+...                     --.
T Consensus       128 l~~i~~~-------aF~~~~~~~~~~~~~~~~i-~~~aF~~c~~L~~i~l~~~~~~---------------------I~~  178 (394)
T 4fs7_A          128 LKSIGVE-------AFKGCDFKEITIPEGVTVI-GDEAFATCESLEYVSLPDSMET---------------------LHN  178 (394)
T ss_dssp             CCEECTT-------TTTTCCCSEEECCTTCCEE-CTTTTTTCTTCCEEECCTTCCE---------------------ECT
T ss_pred             eeeecce-------eeecccccccccCcccccc-chhhhcccCCCcEEecCCccce---------------------ecc
Confidence            2222111       1333332222222211110 1113445666666665432211                     111


Q ss_pred             ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCc
Q 042875          174 SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGL  253 (432)
Q Consensus       174 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L  253 (432)
                      ..+..+.+|+.+.+..+ ........+..+..|+.+.+..+..  .+........+|+.+.+....-.--...+..+..+
T Consensus       179 ~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l  255 (394)
T 4fs7_A          179 GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDL  255 (394)
T ss_dssp             TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSC
T ss_pred             ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceEEECCCceecccccccccccc
Confidence            24455566666665543 2222223455566666655544221  11122223345555555432211112334555666


Q ss_pred             cEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeecc
Q 042875          254 EELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC  333 (432)
Q Consensus       254 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (432)
                      +.+.+..+. .......+..+..++.+......+.  ...+..+.+|+.+.+..+  ...+....|.++.+|+.+.+..+
T Consensus       256 ~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~  330 (394)
T 4fs7_A          256 ESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL  330 (394)
T ss_dssp             CEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT
T ss_pred             eeEEcCCCc-ceeeccccccccccceeccCceeec--cccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc
Confidence            666665432 1112223444555555544333222  123445566666666443  33344444556667777766432


Q ss_pred             CCCCC-chhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccC
Q 042875          334 AVMEI-PQEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRR  378 (432)
Q Consensus       334 ~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~  378 (432)
                       +..+ ..++..|.+|+.+.+..+ ++.+. ..+..|++|+.+.+..
T Consensus       331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence             4443 345666777777777655 55442 4566777777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.32  E-value=1.4e-10  Score=107.95  Aligned_cols=109  Identities=12%  Similarity=0.096  Sum_probs=66.1

Q ss_pred             ecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC--CCCCceeeeeccccc
Q 042875           17 CINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKV   94 (432)
Q Consensus        17 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~l   94 (432)
                      +..+...+|.++ +|+.+++..+ +.       .+....+.-. +|+.+.+.. .++.++...  +|++|+.+++..|.+
T Consensus       124 i~~I~~~aF~~~-~L~~i~l~~~-i~-------~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l  192 (401)
T 4fdw_A          124 VKSIPKDAFRNS-QIAKVVLNEG-LK-------SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI  192 (401)
T ss_dssp             CCEECTTTTTTC-CCSEEECCTT-CC-------EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC
T ss_pred             cCEehHhhcccC-CccEEEeCCC-cc-------EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc
Confidence            555666777775 6777777654 43       2333322222 677777765 555555443  777888888887777


Q ss_pred             cccCCCcccccCCcccCcccCceEeccCCccCCcCC--CCCCCCCceEEEecCc
Q 042875           95 EQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYC  146 (432)
Q Consensus        95 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~  146 (432)
                      +.+..+.       |. +.+|+.+.+..+  ...++  .+.+|++|+.+.+..+
T Consensus       193 ~~I~~~a-------F~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          193 TKLPAST-------FV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             SEECTTT-------TT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT
T ss_pred             eEechhh-------Ee-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC
Confidence            7644333       33 567777777643  33333  4556777777777653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.32  E-value=1e-11  Score=103.52  Aligned_cols=111  Identities=21%  Similarity=0.215  Sum_probs=92.7

Q ss_pred             CccEEEecccccccccc--cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875          158 KITRLYLDQSAIEEVPS--SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL  235 (432)
Q Consensus       158 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  235 (432)
                      +++.|++.+|.+..++.  .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            56666666666666665  3788999999999999888877888999999999999999888777777888999999999


Q ss_pred             cccccccc-CcccCCCCCccEEeecCCCCCCccc
Q 042875          236 DGTAITEL-PSSFENLPGLEELFVSDCSKLDKLP  268 (432)
Q Consensus       236 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~  268 (432)
                      ++|+++.+ |..+..+++|++|++++|++....+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999954 6678899999999999998876543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=1.3e-11  Score=102.97  Aligned_cols=107  Identities=21%  Similarity=0.380  Sum_probs=73.3

Q ss_pred             CccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc
Q 042875          158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG  237 (432)
Q Consensus       158 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  237 (432)
                      +++.|++.+|.+..+|..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence            55666666666666666777777777777777776665556677777777777777766665555667777777777777


Q ss_pred             ccccccCc-ccCCCCCccEEeecCCCCC
Q 042875          238 TAITELPS-SFENLPGLEELFVSDCSKL  264 (432)
Q Consensus       238 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~  264 (432)
                      |.++.++. .+..+++|+.|++++|++.
T Consensus       112 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          112 NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            77776654 3566677777777776554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=1.5e-11  Score=102.48  Aligned_cols=125  Identities=18%  Similarity=0.187  Sum_probs=63.1

Q ss_pred             EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccc
Q 042875          161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI  240 (432)
Q Consensus       161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  240 (432)
                      .++++++++..+|..+.  ++++.|++++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus        14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            34444555555554432  45666666665543 3444455555555555555554444444444555555555555555


Q ss_pred             cccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCC
Q 042875          241 TELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGL  311 (432)
Q Consensus       241 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  311 (432)
                      +                       ...+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|...
T Consensus        91 ~-----------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 R-----------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             C-----------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             C-----------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            4                       3333344444555555555555544433 2444555666666655533

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=3.5e-14  Score=119.29  Aligned_cols=125  Identities=24%  Similarity=0.269  Sum_probs=64.5

Q ss_pred             hhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcE
Q 042875          223 ILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLI  302 (432)
Q Consensus       223 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~  302 (432)
                      .+..+++|++|++++|.++.+| .+..+++|+.|++++|                        .+..++..+..+++|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n------------------------~l~~l~~~~~~~~~L~~   97 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN------------------------LIKKIENLDAVADTLEE   97 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE------------------------EECSCSSHHHHHHHCSE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC------------------------CcccccchhhcCCcCCE
Confidence            4555555555555555555444 3444444444444444                        33333333333344444


Q ss_pred             EeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch--hhhcCCCCCEEEeeCCCCccc-Ch----------hccCCC
Q 042875          303 LDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ--EIAYLSSLKSLDLRGNNFESL-PA----------SIKQLS  369 (432)
Q Consensus       303 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~l-~~----------~~~~l~  369 (432)
                      |++++|.+.+ ++  .+..+++|+.|++++|.+..++.  .+..+++|+.|++++|.++.. |.          .+..++
T Consensus        98 L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~  174 (198)
T 1ds9_A           98 LWISYNQIAS-LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP  174 (198)
T ss_dssp             EEEEEEECCC-HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred             EECcCCcCCc-CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence            4444443222 22  13345566666666666666443  456667777777777766532 21          256677


Q ss_pred             CCCeee
Q 042875          370 RLCSLD  375 (432)
Q Consensus       370 ~L~~L~  375 (432)
                      +|+.|+
T Consensus       175 ~L~~Ld  180 (198)
T 1ds9_A          175 NLKKLD  180 (198)
T ss_dssp             SCSEEC
T ss_pred             CcEEEC
Confidence            777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.28  E-value=2.4e-11  Score=99.86  Aligned_cols=61  Identities=18%  Similarity=0.142  Sum_probs=24.2

Q ss_pred             CCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875          181 DLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT  241 (432)
Q Consensus       181 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  241 (432)
                      +++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~   89 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ   89 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence            4444444444433322223334444444444444333222222333444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.28  E-value=3.5e-11  Score=98.89  Aligned_cols=127  Identities=20%  Similarity=0.307  Sum_probs=66.0

Q ss_pred             CeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCC
Q 042875          231 KRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKG  310 (432)
Q Consensus       231 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  310 (432)
                      +.++++++.++.+|..+  .++++.|++++|.+.+..+..+..+++|++|++++|.+..++.                  
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------   69 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD------------------   69 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT------------------
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh------------------
Confidence            45555555555555322  2456666666665544333334455555555555555443332                  


Q ss_pred             CCCCchhhhcCCCCccEEEeeccCCCCCchh-hhcCCCCCEEEeeCCCCcccChh-ccCCCCCCeeeccCCCCCc
Q 042875          311 LVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFESLPAS-IKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~  383 (432)
                            ..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|++..
T Consensus        70 ------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           70 ------GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ------hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence                  2233445555555555555553332 35556666666666666655443 3456666666666665443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=7e-14  Score=117.47  Aligned_cols=141  Identities=13%  Similarity=0.008  Sum_probs=88.8

Q ss_pred             hhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCccc
Q 042875           24 AFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKA  103 (432)
Q Consensus        24 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~  103 (432)
                      .+...+.++.++++.+.+.+.......+|..+..++ +|++|++++|.++.+|...++++|++|++++|.++.       
T Consensus        13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~-------   84 (198)
T 1ds9_A           13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK-------   84 (198)
T ss_dssp             HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT-TCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS-------
T ss_pred             HHHhcccccCcchheeEeccccCcHhhhhHHHhcCC-CCCEEECCCCCCccccccccCCCCCEEECCCCCccc-------
Confidence            466777888888888888762111122223667775 888888888888777733377888888888888764       


Q ss_pred             ccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEeccccccccc--ccccCCCC
Q 042875          104 CVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVP--SSIECLTD  181 (432)
Q Consensus       104 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~  181 (432)
                       +|..+..+++|+.|++++|...+ ++.+..+++|++|++++|.+.                     .++  ..+..+++
T Consensus        85 -l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~---------------------~~~~~~~l~~l~~  141 (198)
T 1ds9_A           85 -IENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKIT---------------------NWGEIDKLAALDK  141 (198)
T ss_dssp             -CSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECC---------------------CHHHHHHHTTTTT
T ss_pred             -ccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCC---------------------chhHHHHHhcCCC
Confidence             55556667778888877765433 333334455555555554332                     222  24556666


Q ss_pred             CCEEeecccccccc
Q 042875          182 LEVLDLRDCKRLKR  195 (432)
Q Consensus       182 L~~L~l~~~~~~~~  195 (432)
                      |++|++++|.+...
T Consensus       142 L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          142 LEDLLLAGNPLYND  155 (198)
T ss_dssp             CSEEEECSCHHHHH
T ss_pred             CCEEEecCCccccc
Confidence            77777776665443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.14  E-value=5.3e-09  Score=97.28  Aligned_cols=233  Identities=12%  Similarity=0.124  Sum_probs=143.6

Q ss_pred             cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCcc
Q 042875          175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLE  254 (432)
Q Consensus       175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~  254 (432)
                      +|.++ +|+.+.+..+ ....-..+|.++ +|+.+.+.. .....-..+|..+.+|+.+++..+.++.++.....+.+|+
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~  206 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE  206 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence            45554 6777777664 333233345553 588888775 3333334567778888888888887877766555567888


Q ss_pred             EEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccC
Q 042875          255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCA  334 (432)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  334 (432)
                      .+.+..+ ....-..++.++++|+.+.+..+ +..+........+|+.+.+..+  ...+....|..+++|+.+.+.++.
T Consensus       207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSC
T ss_pred             EEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCcc
Confidence            8888754 33333455677888888888764 3433333222267888877442  344555566678888888887776


Q ss_pred             CC-----C-CchhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccCCCCCcccC----CCCCCccEEeccCCCCc
Q 042875          335 VM-----E-IPQEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNMLQSLP----ALPLCLKYLHLTGCNML  403 (432)
Q Consensus       335 ~~-----~-~~~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~c~~l  403 (432)
                      +.     . -...+..|++|+.+.+.+ .++.++ ..+..|++|+.+.+..+  ++.++    ..+ +|+.+++.++. .
T Consensus       283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~  357 (401)
T 4fdw_A          283 FNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-P  357 (401)
T ss_dssp             CCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-C
T ss_pred             ccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-C
Confidence            54     2 334567788888888874 466543 45677888888888553  34443    223 78888887753 3


Q ss_pred             cccCC-----CCCccceecccc
Q 042875          404 RSLPE-----LPLCLQELDATN  420 (432)
Q Consensus       404 ~~l~~-----~~~~L~~L~l~~  420 (432)
                      ..++.     ....++.|++..
T Consensus       358 ~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          358 PQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CBCCCSSCCCSCTTCCEEEECG
T ss_pred             cccccccccCCCCCccEEEeCH
Confidence            33322     223456666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.13  E-value=5.7e-09  Score=97.29  Aligned_cols=215  Identities=16%  Similarity=0.118  Sum_probs=148.5

Q ss_pred             ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCc
Q 042875          174 SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGL  253 (432)
Q Consensus       174 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L  253 (432)
                      .++.++++|+.+.+..+ ........|..+.+|+.+.+..+ .......++..+..|+.+.+..+... +.........|
T Consensus       156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l  232 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGV  232 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCC
T ss_pred             hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCC
Confidence            46888999999999764 23333456788999999999764 33333456778888998887665333 33344556789


Q ss_pred             cEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeecc
Q 042875          254 EELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC  333 (432)
Q Consensus       254 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (432)
                      +.+.+... ........+..+..++.+.+..+...-....+..+..++.+......    ++...+..+.+|+.+.+..+
T Consensus       233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             CEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT
T ss_pred             ceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee----eccccccccccccccccccc
Confidence            99988754 22222345667888988888776544334556777888888775543    34445668899999998654


Q ss_pred             CCCCC-chhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccCCCCCcccC----CCCCCccEEeccCC
Q 042875          334 AVMEI-PQEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNMLQSLP----ALPLCLKYLHLTGC  400 (432)
Q Consensus       334 ~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~c  400 (432)
                       +..+ ..++..|.+|+.+++..+ ++.+. ..+..|++|+.+.+..+  ++.+.    ..+.+|+.+++..+
T Consensus       308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence             5554 445788999999999754 66554 56789999999999765  45554    23467888887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.08  E-value=4.7e-10  Score=91.62  Aligned_cols=102  Identities=20%  Similarity=0.268  Sum_probs=59.0

Q ss_pred             cccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-hhcCCCCCEEEeeCC
Q 042875          278 RHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGN  356 (432)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n  356 (432)
                      +.++++++.+..+|..+.  +++++|++++|.+.+ ++...+..+++|+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            344555555555544332  556666666655333 2222344566666666666666665544 356667777777777


Q ss_pred             CCcccChh-ccCCCCCCeeeccCCCCC
Q 042875          357 NFESLPAS-IKQLSRLCSLDLRRCNML  382 (432)
Q Consensus       357 ~l~~l~~~-~~~l~~L~~L~l~~~~~~  382 (432)
                      +++.+|.. +..+++|++|++++|++.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            66666553 566667777777776643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.06  E-value=6.7e-10  Score=90.40  Aligned_cols=101  Identities=19%  Similarity=0.297  Sum_probs=53.2

Q ss_pred             cccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-hhcCCCCCEEEeeCC
Q 042875          278 RHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGN  356 (432)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n  356 (432)
                      +.++++++.+..+|..+  .+++++|++++|.+....+ ..+..+++|+.|++++|++..++.. +..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            34444444444444333  2455555555554332222 2234555666666666666664443 355666666666666


Q ss_pred             CCcccCh-hccCCCCCCeeeccCCCC
Q 042875          357 NFESLPA-SIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       357 ~l~~l~~-~~~~l~~L~~L~l~~~~~  381 (432)
                      +++.+|+ .+..+++|++|++++|++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            6665544 355666666666666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.06  E-value=7.1e-10  Score=90.25  Aligned_cols=106  Identities=21%  Similarity=0.272  Sum_probs=78.6

Q ss_pred             ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875          159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT  238 (432)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  238 (432)
                      .+.++++++.+..+|..+.  ++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3456666666777776653  67888888888777766777778888888888887776555556677888888888888


Q ss_pred             cccccCc-ccCCCCCccEEeecCCCCCCc
Q 042875          239 AITELPS-SFENLPGLEELFVSDCSKLDK  266 (432)
Q Consensus       239 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~  266 (432)
                      +++.++. .+..+++|+.|++++|++...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            8887665 467788888888888876543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.05  E-value=7.3e-10  Score=90.51  Aligned_cols=104  Identities=21%  Similarity=0.299  Sum_probs=73.2

Q ss_pred             cEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875          160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA  239 (432)
Q Consensus       160 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  239 (432)
                      +.+++.++++..+|..+.  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            455666666666776553  677888888877766666677777788888888776655444455677788888888887


Q ss_pred             ccccCcc-cCCCCCccEEeecCCCCCC
Q 042875          240 ITELPSS-FENLPGLEELFVSDCSKLD  265 (432)
Q Consensus       240 ~~~~~~~-~~~l~~L~~L~l~~~~~~~  265 (432)
                      ++.++.. +..+++|+.|++++|++..
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccc
Confidence            7766654 6777777888877776543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.02  E-value=4.7e-08  Score=91.06  Aligned_cols=128  Identities=19%  Similarity=0.239  Sum_probs=75.5

Q ss_pred             cccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCchhhhcCCC
Q 042875          245 SSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPRSLLLGLS  323 (432)
Q Consensus       245 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  323 (432)
                      .++..+..|+.+.+.+.. .......+.++..|+.+.+.. .+..++ ..+..|.+|+.+.+..+  ...+....|.+|.
T Consensus       259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred             ceeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence            345666777777765432 222233455667777777643 233222 34666788888887653  4455555677888


Q ss_pred             CccEEEeeccCCCCC-chhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCC
Q 042875          324 SLGLLYIMNCAVMEI-PQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRC  379 (432)
Q Consensus       324 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~  379 (432)
                      +|+.+.+-.+ ++.+ ..++..|.+|+.+++.++....  ..+..+.+|+.+.+..+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence            8999888543 5554 3567889999999998874331  34556778887777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.01  E-value=2.8e-11  Score=111.49  Aligned_cols=38  Identities=18%  Similarity=0.102  Sum_probs=19.2

Q ss_pred             CCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCc
Q 042875          322 LSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       322 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~  359 (432)
                      .++|++|++++|.++.     ++..+...++|++|++++|.++
T Consensus       210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3455555555555543     2233344455555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.98  E-value=4.8e-11  Score=109.96  Aligned_cols=157  Identities=15%  Similarity=0.180  Sum_probs=108.4

Q ss_pred             CCCCCeeeeccccccc-----cCcccC-CCCCccEEeecCCCCCCcccccc-CCcccccccccccccccc-----cCccc
Q 042875          227 MEHLKRINLDGTAITE-----LPSSFE-NLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSAISQ-----LPSSV  294 (432)
Q Consensus       227 l~~L~~L~l~~~~~~~-----~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-----~~~~~  294 (432)
                      +++++++++++|.++.     +...+. ..++|++|++++|.+.......+ ..+++|++|++++|.+..     +...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4689999999999872     233333 34689999999997754333222 245788999999998862     11222


Q ss_pred             -cCCCCCcEEeccCCCCCCCCchh---hhcCCCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCcc-----
Q 042875          295 -ADSNALLILDFSRCKGLVSLPRS---LLLGLSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFES-----  360 (432)
Q Consensus       295 -~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~-----  360 (432)
                       ...++|++|++++|.+.......   .+...++|++|++++|.++.     ++..+..+++|+.|++++|.++.     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             34678899999888754322111   12456788999999888876     34556777889999999988872     


Q ss_pred             cChhccCCCCCCeeeccCCCCCc
Q 042875          361 LPASIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       361 l~~~~~~l~~L~~L~l~~~~~~~  383 (432)
                      +...+...++|++|++++|++..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            34455677888999999888644

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.95  E-value=1e-07  Score=88.72  Aligned_cols=106  Identities=18%  Similarity=0.278  Sum_probs=53.6

Q ss_pred             ccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCC-chhhhcCCCC
Q 042875          270 NIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEI-PQEIAYLSSL  348 (432)
Q Consensus       270 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L  348 (432)
                      ++..+..|+.+.+..+...--...+..++.|+.+.+..  ....++...|.++.+|+.+.+..+ ++.+ ..++..|.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            34555666666554433222223445556666666542  133344444555666666666432 3332 2345556666


Q ss_pred             CEEEeeCCCCcccC-hhccCCCCCCeeeccCC
Q 042875          349 KSLDLRGNNFESLP-ASIKQLSRLCSLDLRRC  379 (432)
Q Consensus       349 ~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~  379 (432)
                      +.+.+..+ ++.+. ..+.+|++|+.+.+.++
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            66666443 44332 34556666666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=6.2e-09  Score=95.08  Aligned_cols=62  Identities=13%  Similarity=0.263  Sum_probs=36.4

Q ss_pred             CCCCccEEEeeccCCCC-Cchhh---hcCCCCCEEEeeCCCCcc-----cChhccCCCCCCeeeccCCCCC
Q 042875          321 GLSSLGLLYIMNCAVME-IPQEI---AYLSSLKSLDLRGNNFES-----LPASIKQLSRLCSLDLRRCNML  382 (432)
Q Consensus       321 ~~~~L~~L~l~~~~~~~-~~~~~---~~~~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~~~~~  382 (432)
                      .+++|+.|++.+|.+.. .+..+   ..+++|++|+|+.|.++.     ++..+..+++|+.|++++|.+.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            35667777776666654 22222   245667777777776662     3334455677777777776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.75  E-value=2.7e-08  Score=91.02  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=63.4

Q ss_pred             EEeecCCCCCCccccccCCccccccccccc-ccccccC-ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeec
Q 042875          255 ELFVSDCSKLDKLPDNIGNLESLRHISAAG-SAISQLP-SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMN  332 (432)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  332 (432)
                      .++.++++....+|. +..+.+|++|++++ |.+..++ ..+..+++|+.|+|++|.+.+ ++...+..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCC
Confidence            345555423334666 66777777777775 7776555 356667777777777776433 3333455667777777777


Q ss_pred             cCCCCCchhhhcCCCCCEEEeeCCCCc
Q 042875          333 CAVMEIPQEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       333 ~~~~~~~~~~~~~~~L~~L~l~~n~l~  359 (432)
                      |.+..+|........|+.|++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCcc
Confidence            777766554333333777777777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.75  E-value=3.2e-08  Score=90.57  Aligned_cols=103  Identities=17%  Similarity=0.092  Sum_probs=80.0

Q ss_pred             EEeccc-ccccccccccCCCCCCEEeecc-ccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875          162 LYLDQS-AIEEVPSSIECLTDLEVLDLRD-CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA  239 (432)
Q Consensus       162 L~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  239 (432)
                      +++.++ ++..+|. +..+++|+.|++++ |.+....+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|+
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            455555 6677887 88888889999986 77666666778888899999999888777777788888899999999998


Q ss_pred             ccccCcccCCCCCccEEeecCCCCCC
Q 042875          240 ITELPSSFENLPGLEELFVSDCSKLD  265 (432)
Q Consensus       240 ~~~~~~~~~~l~~L~~L~l~~~~~~~  265 (432)
                      ++.+|........|+.|++.+|.+..
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             cceeCHHHcccCCceEEEeeCCCccC
Confidence            88777654444448899998887754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.69  E-value=2.1e-08  Score=91.56  Aligned_cols=158  Identities=15%  Similarity=0.161  Sum_probs=83.9

Q ss_pred             hcCCCCccEEEecCccC---------cccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccc
Q 042875          200 FCKLRSLVDLFVNGCLN---------LERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDN  270 (432)
Q Consensus       200 ~~~~~~L~~L~l~~~~~---------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  270 (432)
                      ...+++|+.|.+.+...         ...+...+..+++|+.|.++++.-..++. + .+++|+.|++..|.+.......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            34567777777754321         11244555666777777776652122332 2 2567777777766543322222


Q ss_pred             c--CCcccccccccccc--c------ccccCccc--cCCCCCcEEeccCCCCCCCCchhhh--cCCCCccEEEeeccCCC
Q 042875          271 I--GNLESLRHISAAGS--A------ISQLPSSV--ADSNALLILDFSRCKGLVSLPRSLL--LGLSSLGLLYIMNCAVM  336 (432)
Q Consensus       271 ~--~~l~~L~~L~l~~~--~------~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~  336 (432)
                      +  ..+|+|+.|+++.+  .      +..+...+  ..+++|++|++.+|...+......+  ..+++|++|+++.|.+.
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            2  24667777766421  1      11111112  2456777777776664433222222  23566777777777666


Q ss_pred             C-----CchhhhcCCCCCEEEeeCCCCc
Q 042875          337 E-----IPQEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       337 ~-----~~~~~~~~~~L~~L~l~~n~l~  359 (432)
                      .     ++..+..+++|+.|++++|.++
T Consensus       293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          293 DEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             hHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            5     2333345667777777777665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.67  E-value=4e-06  Score=77.55  Aligned_cols=150  Identities=12%  Similarity=0.037  Sum_probs=85.6

Q ss_pred             ccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccccc-CcccCCCCCcc
Q 042875          176 IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITEL-PSSFENLPGLE  254 (432)
Q Consensus       176 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~  254 (432)
                      +..+..+..+.+.... .......+..+..++.+.+... ........+..+..|+.+.+..+ ++.+ ..++..+.+++
T Consensus       190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK  266 (379)
T ss_dssp             CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence            3344455555444321 1222334555667777776542 22222344556677777777554 3333 23456677777


Q ss_pred             EEeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEee
Q 042875          255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM  331 (432)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  331 (432)
                      .+.+... ....-...+..+.+|+.+.+.++.+..+. ..+..|.+|+.+.+..+  ...+....|.++.+|+.+.+.
T Consensus       267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence            7777653 22222334667778888877776666443 45667788888887543  344555556677778877764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.65  E-value=8.4e-06  Score=75.35  Aligned_cols=128  Identities=16%  Similarity=0.215  Sum_probs=67.3

Q ss_pred             ccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCCCCchhhhcCCCC
Q 042875          246 SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSS  324 (432)
Q Consensus       246 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  324 (432)
                      .+..+..++.+.+..+ ........+..+..|+.+.+..+ +..+ ...+..+.+++.+.+...  ...++...+.++.+
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~  287 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccc
Confidence            3444555555555432 11111223445555665555443 2211 223445566666666432  33344444556677


Q ss_pred             ccEEEeeccCCCCCc-hhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccC
Q 042875          325 LGLLYIMNCAVMEIP-QEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRR  378 (432)
Q Consensus       325 L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~  378 (432)
                      |+.+.+.++.+..+. .++..|.+|+.+.+..+ ++.+. ..+.+|++|+++.+..
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            777777666666533 44666777777777543 44443 3456677777666643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.48  E-value=5.5e-08  Score=78.07  Aligned_cols=81  Identities=15%  Similarity=0.199  Sum_probs=42.9

Q ss_pred             CccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCC-Ccc-cChhccCC----CCCCeeeccCCCCCcccC----CCCCCc
Q 042875          324 SLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNN-FES-LPASIKQL----SRLCSLDLRRCNMLQSLP----ALPLCL  392 (432)
Q Consensus       324 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~-l~~-l~~~~~~l----~~L~~L~l~~~~~~~~~~----~~~~~L  392 (432)
                      .|+.|++++|.++. -...+..+++|+.|+|++|. ++. --..+...    ++|++|++++|..++.-.    ..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            47777777777655 23335566777777777763 541 11223332    356666666665433211    123455


Q ss_pred             cEEeccCCCCcc
Q 042875          393 KYLHLTGCNMLR  404 (432)
Q Consensus       393 ~~L~l~~c~~l~  404 (432)
                      +.|++++|+.++
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.37  E-value=1.2e-07  Score=78.09  Aligned_cols=59  Identities=10%  Similarity=0.154  Sum_probs=31.5

Q ss_pred             CCccEEEeeccCCCC-----CchhhhcCCCCCEEEe--eCCCCc-----ccChhccCCCCCCeeeccCCCC
Q 042875          323 SSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDL--RGNNFE-----SLPASIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       323 ~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l--~~n~l~-----~l~~~~~~l~~L~~L~l~~~~~  381 (432)
                      ++|++|++++|.+..     +...+...++|++|++  ++|.+.     .+...+...++|++|++++|.+
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            455555555555554     3334455556666666  556555     1334444555666666665543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.20  E-value=4.2e-07  Score=74.79  Aligned_cols=92  Identities=16%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             cccccCCCCCCEEeeccc-cccc----cccchhcCCCCccEEEecCccCccc----chHhhhcCCCCCeeeeccccccc-
Q 042875          173 PSSIECLTDLEVLDLRDC-KRLK----RISTRFCKLRSLVDLFVNGCLNLER----FPEILEKMEHLKRINLDGTAITE-  242 (432)
Q Consensus       173 ~~~~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~-  242 (432)
                      ...+...+.|++|++++| .+..    .+...+...++|++|++++|.+...    +...+...++|++|++++|.+.. 
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345556777777888777 5533    2344455667777777777765533    33444555677777777777662 


Q ss_pred             ----cCcccCCCCCccEEee--cCCCCC
Q 042875          243 ----LPSSFENLPGLEELFV--SDCSKL  264 (432)
Q Consensus       243 ----~~~~~~~l~~L~~L~l--~~~~~~  264 (432)
                          +...+...++|++|++  ++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence                3445555666667766  555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=2.5e-06  Score=68.36  Aligned_cols=84  Identities=12%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             CCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccC-CCC-Cchhhhc----CCCCCEEEeeCC-CCc--ccChhccCCC
Q 042875          299 ALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCA-VME-IPQEIAY----LSSLKSLDLRGN-NFE--SLPASIKQLS  369 (432)
Q Consensus       299 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~----~~~L~~L~l~~n-~l~--~l~~~~~~l~  369 (432)
                      .|++|++++|. +++.....+..+++|++|++++|. +++ ....++.    +++|++|++++| +++  .+ ..+..++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR  139 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence            46666666665 232222233466666677776664 443 2222333    246777777776 355  22 3445677


Q ss_pred             CCCeeeccCCCCCcc
Q 042875          370 RLCSLDLRRCNMLQS  384 (432)
Q Consensus       370 ~L~~L~l~~~~~~~~  384 (432)
                      +|++|++++|+.++.
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            777777777765543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.91  E-value=1.2e-06  Score=75.71  Aligned_cols=110  Identities=19%  Similarity=0.174  Sum_probs=63.6

Q ss_pred             hhhccccccee--eeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC----CCCCceeeeeccccccc
Q 042875           23 GAFTNMSNLRL--LKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF----KPKNLVELNLRFSKVEQ   96 (432)
Q Consensus        23 ~~~~~l~~L~~--L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~l~~   96 (432)
                      +.|...+.|+.  ++++.|+....   .+.+...-..+| +|+.|+|++|.++.++...    .+++|++|+|++|.++.
T Consensus       135 s~l~~dp~L~~~~l~l~~N~~~~~---~~~l~i~~~~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          135 KGLRSDPDLVAQNIDVVLNRRSCM---AATLRIIEENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             TTGGGCHHHHHTTCCCCTTSHHHH---HHHHHHHHHHCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             HHcCCCcchhhcCccccCCHHHHH---HHHHHHHHhhCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            45666666766  66666643311   001111113455 7888888888777655322    67788888888888765


Q ss_pred             cCCCcccccCCcccCcccCceEeccCCccCCcCCC--------CCCCCCceEEEe
Q 042875           97 PWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS--------NLHFVCPVTINF  143 (432)
Q Consensus        97 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~~L~~L~l  143 (432)
                      ..  .   + ..+..+ +|+.|++++|...+.++.        +..+|+|+.|+-
T Consensus       211 ~~--~---l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          211 ER--E---L-DKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GG--G---G-GGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             ch--h---h-hhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            31  1   1 112333 788888888777665441        334777777753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=2.1e-05  Score=68.02  Aligned_cols=65  Identities=20%  Similarity=0.290  Sum_probs=41.8

Q ss_pred             CCCCccEEEeeccCCCCC---chhhhcCCCCCEEEeeCCCCcccChhccCCC--CCCeeeccCCCCCcccC
Q 042875          321 GLSSLGLLYIMNCAVMEI---PQEIAYLSSLKSLDLRGNNFESLPASIKQLS--RLCSLDLRRCNMLQSLP  386 (432)
Q Consensus       321 ~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~--~L~~L~l~~~~~~~~~~  386 (432)
                      .+++|+.|++++|.+..+   +..+..+++|+.|+|++|+++.+ ..+..++  +|++|++++|++.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence            456677777777776663   34456777777777777777754 2233344  77777777777665443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.96  E-value=0.0003  Score=57.44  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=15.3

Q ss_pred             CccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCc
Q 042875          324 SLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       324 ~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~  359 (432)
                      .|+.|++++|.+.+     +...+..-+.|+.|+|++|.|.
T Consensus        71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34444444444443     2233333344444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.78  E-value=0.00053  Score=56.00  Aligned_cols=109  Identities=12%  Similarity=0.132  Sum_probs=63.1

Q ss_pred             CCcccccccccccc-ccc-----ccCccccCCCCCcEEeccCCCCCCCCchhh---hcCCCCccEEEeeccCCCC-----
Q 042875          272 GNLESLRHISAAGS-AIS-----QLPSSVADSNALLILDFSRCKGLVSLPRSL---LLGLSSLGLLYIMNCAVME-----  337 (432)
Q Consensus       272 ~~l~~L~~L~l~~~-~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~-----  337 (432)
                      ..-+.|++|+++++ .+.     .+...+..-+.|+.|+|++|.+.+.....+   +..-+.|++|+|+.|.|..     
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            33466777777764 554     233445556677777777776543322221   1123567777777777776     


Q ss_pred             CchhhhcCCCCCEEEeeCCC---Cc-----ccChhccCCCCCCeeeccCCC
Q 042875          338 IPQEIAYLSSLKSLDLRGNN---FE-----SLPASIKQLSRLCSLDLRRCN  380 (432)
Q Consensus       338 ~~~~~~~~~~L~~L~l~~n~---l~-----~l~~~~~~l~~L~~L~l~~~~  380 (432)
                      +...+..-+.|++|+|++|.   +.     .+...+..-+.|++|+++.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            44445555667777776543   23     233445556667777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.72  E-value=0.015  Score=44.11  Aligned_cols=34  Identities=29%  Similarity=0.398  Sum_probs=16.5

Q ss_pred             CCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCC
Q 042875          347 SLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCN  380 (432)
Q Consensus       347 ~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~  380 (432)
                      +++.|+|++|+|+.+|. .+..+++|+.|+|.+|+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            45555555555554432 23444555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.18  E-value=0.038  Score=41.80  Aligned_cols=35  Identities=14%  Similarity=0.095  Sum_probs=16.9

Q ss_pred             CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCc
Q 042875           83 NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCK  124 (432)
Q Consensus        83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (432)
                      +|++|+|++|.|+.+..+       .|..+++|+.|+|++|.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~-------~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPG-------LLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTT-------TGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChh-------hhhhccccCEEEecCCC
Confidence            455555555555543221       24445555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	432
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 62.5 bits (150), Expect = 2e-11
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 329 YIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPAL 388
           Y +N +  EI        SL+ L++  N    LPA   +L R   L     N L  +P L
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER---LIA-SFNHLAEVPEL 322

Query: 389 PLCLKYLHLTGCNMLRSLPELPLCLQELDATN 420
           P  LK LH+     LR  P++P  +++L   +
Sbjct: 323 PQNLKQLHVEYNP-LREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 176 IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL 235
            +    LE L++ + K L  +     +L  L     N   +L   PE+ +   +LK++++
Sbjct: 280 CDLPPSLEELNVSNNK-LIELPALPPRLERL-IASFN---HLAEVPELPQ---NLKQLHV 331

Query: 236 DGTAITELPSSFENLPGL 253
           +   + E P   E++  L
Sbjct: 332 EYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 3/75 (4%)

Query: 328 LYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA 387
           L + N  +  +P+       L+SL    N+   LP   + L  L   +     +    P 
Sbjct: 43  LELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL 99

Query: 388 LPLCLKYLHLTGCNM 402
           L       +      
Sbjct: 100 LEYLGVSNNQLEKLP 114

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 369 SRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLP 428
            +   L+L     L SLP LP  L+ L    CN L  LPELP  L+ L   + N L++L 
Sbjct: 38  RQAHELELNNLG-LSSLPELPPHLESLVA-SCNSLTELPELPQSLKSLLV-DNNNLKALS 94

Query: 429 EIPS 432
           ++P 
Sbjct: 95  DLPP 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 3e-11
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 5/189 (2%)

Query: 215 LNLERFPEILEKMEHLKRINLDGTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGN 273
           L LE+ P+ L        ++L    ITE+    F+NL  L  L + +       P     
Sbjct: 20  LGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77

Query: 274 LESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC 333
           L  L  +  + + + +LP  +  +   L +  +    +     + L  +  + L      
Sbjct: 78  LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 334 AVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLK 393
           +          +  L  + +   N  ++P  +     L  L L    + +   A    L 
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 195

Query: 394 YLHLTGCNM 402
            L   G + 
Sbjct: 196 NLAKLGLSF 204

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 8e-11
 Identities = 47/279 (16%), Positives = 99/279 (35%), Gaps = 31/279 (11%)

Query: 149 LIEFPQ-ISGKITRLYLDQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSL 206
           L + P+ +      L L  + I E+     + L +L  L L + K  K     F  L  L
Sbjct: 22  LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 207 VDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDK 266
             L+++     E   ++ + ++ L+    + T + +   +  N   + EL  +       
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 267 LPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILD-----------FSRCKGLVSLP 315
                  ++ L +I  A + I+ +P  +  S   L LD                 L  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 316 RS----------LLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS- 364
            S           L     L  L++ N  ++++P  +A    ++ + L  NN  ++ ++ 
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 365 ------IKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHL 397
                   + +    + L   N +Q     P   + +++
Sbjct: 262 FCPPGYNTKKASYSGVSL-FSNPVQYWEIQPSTFRCVYV 299

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 46/291 (15%), Positives = 87/291 (29%), Gaps = 47/291 (16%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           LDL   K   +  G F N+ NL  L     K  +I       P     L  KL  L+   
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS------PGAFAPLV-KLERLYLSK 88

Query: 70  YPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSF 129
             L+ LP                                 +  + L     E  K  +S 
Sbjct: 89  NQLKELP-----------------------------EKMPKTLQELRVHENEITKVRKSV 119

Query: 130 PSNLHFVCPVTINFSYCVTLIEFPQISGKITRL---YLDQSAIEEVPSSIECLTDLEVLD 186
            + L+ +  V +  +   +          + +L    +  + I  +P  +     L  L 
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELH 177

Query: 187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS 246
           L   K  K  +     L +L  L ++           L    HL+ ++L+   + ++P  
Sbjct: 178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 237

Query: 247 FENLPGLEELFVSDC------SKLDKLPDNIGNLESLRHISAAGSAISQLP 291
             +   ++ +++ +       S     P       S   +S   + +    
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 6e-05
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 4/152 (2%)

Query: 276 SLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAV 335
            LR +  +   + ++P  +       +LD    K +  +       L +L  L ++N  +
Sbjct: 11  HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKI 67

Query: 336 MEI-PQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKY 394
            +I P   A L  L+ L L  N  + LP  + +  +   +       ++      L    
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 395 LHLTGCNMLRSLPELPLCLQELDATNCNRLQS 426
           +   G N L+S        Q +   +  R+  
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 12/173 (6%)

Query: 227 MEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSA 286
           + +L  ++L+G  + ++ +   +L  L +L +++    +  P  +  L  L  +    + 
Sbjct: 218 LTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 287 ISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLS 346
           IS +         L  L             S +  L +L  L +    + +I   ++ L+
Sbjct: 275 ISNISPL----AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLT 329

Query: 347 SLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC--LKYLHL 397
            L+ L    N    +  S+  L+ +  L     N +  L  L     +  L L
Sbjct: 330 KLQRLFFANNKVSDVS-SLANLTNINWLSA-GHNQISDLTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 6e-07
 Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 214 CLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGN 273
             N  +    L  + +L  ++L    I+ L      L  L EL +    ++  +    G 
Sbjct: 227 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN-QISNISPLAGL 284

Query: 274 LESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC 333
                            P S   +   L L F+    +  +       L+ L  L+  N 
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-----SLTKLQRLFFANN 339

Query: 334 AVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLR 377
            V ++   +A L+++  L    N    L   +  L+R+  L L 
Sbjct: 340 KVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 47/350 (13%), Positives = 105/350 (30%), Gaps = 40/350 (11%)

Query: 10  LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDT 69
           ++ S  +  ++ P    N++ L  +     +  +I             L           
Sbjct: 71  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 70  YPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSF 129
             L  L       N +      S +    +       + ++    L+ L      S +  
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188

Query: 130 PSNLHFVCPVTINFSYC---VTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD 186
             ++        +       ++ I    I   +  L L+ + ++++ + +  LT+L  LD
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLD 247

Query: 187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS 246
           L + +             + + L  N   N+     +          N       E  S 
Sbjct: 248 LANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-----QLEDISP 302

Query: 247 FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFS 306
             NL  L  L +   +  D  P  + +L  L+ +  A + +S + S              
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS-------------- 346

Query: 307 RCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGN 356
                       L  L+++  L   +  + ++   +A L+ +  L L   
Sbjct: 347 ------------LANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQ 383

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 38/261 (14%), Positives = 78/261 (29%), Gaps = 20/261 (7%)

Query: 185 LDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITE-- 242
           LDL        ++ R    + ++          +   E       ++ ++L  + I    
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62

Query: 243 LPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLI 302
           L         L+ L +      D + + +    +L  ++ +G +     +     ++   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 303 LDFS-----------RCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSL 351
           LD               +  V+     +  L+  G    +  + +              L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 352 DLRGNNFESLPASIKQLSRLCSLDLRRCNML--QSLPALPLC--LKYLHLTGCNMLRSLP 407
                          QL+ L  L L RC  +  ++L  L     LK L + G     +L 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 408 ELPLCLQELDATNCNRLQSLP 428
            L   L  L   NC+   ++ 
Sbjct: 243 LLKEALPHLQI-NCSHFTTIA 262

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 337 EIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLC 391
            +PQ +  L  L SL++  NN          L R           L   P LP C
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP-LPAC 312

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 8e-06
 Identities = 37/190 (19%), Positives = 63/190 (33%), Gaps = 4/190 (2%)

Query: 169 IEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKME 228
           +  +P  +    D  +L L +                L  L ++         ++   + 
Sbjct: 22  LTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLP 77

Query: 229 HLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS 288
            L  ++L    +  LP   + LP L  L VS           +  L  L+ +   G+ + 
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 289 QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSL 348
            LP  +      L         L  LP  LL GL +L  L +   ++  IP+       L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

Query: 349 KSLDLRGNNF 358
               L GN +
Sbjct: 198 PFAFLHGNPW 207

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 2/58 (3%)

Query: 331 MNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPAL 388
            N             S    LD+      SLP+    L  L  L  R    L+ LP L
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLPTL 241

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 54/262 (20%), Positives = 90/262 (34%), Gaps = 10/262 (3%)

Query: 149 LIEFPQ-ISGKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSL 206
           L   P  I     R++L  + I  VP +S     +L +L L      +  +  F  L  L
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 207 VDLFVNGCLNLER-FPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLD 265
             L ++    L    P     +  L  ++LD   + EL           +      + L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 266 KLPDN-IGNLESLRHISAAGSAISQLPSSVADS-NALLILDFSRCKGLVSLPRSLLLGLS 323
            LPD+   +L +L H+   G+ IS +P       ++L  L   + +     P +      
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 324 SLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ 383
            + L    N       + +A L +L+ L L  N +     +    + L         +  
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262

Query: 384 SLPA----LPLC-LKYLHLTGC 400
           SLP       L  L    L GC
Sbjct: 263 SLPQRLAGRDLKRLAANDLQGC 284

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 1/105 (0%)

Query: 268 PDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGL 327
             ++  L  + H+  + + +  LP ++A    L +L  S          + L  L  L L
Sbjct: 13  LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLL 72

Query: 328 LYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLC 372
                       Q +     L  L+L+GN+        ++L+ + 
Sbjct: 73  CN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.44
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.07
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.05
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.91
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.17
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.3e-25  Score=206.36  Aligned_cols=343  Identities=16%  Similarity=0.197  Sum_probs=204.4

Q ss_pred             hcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccc
Q 042875           25 FTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKAC  104 (432)
Q Consensus        25 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  104 (432)
                      .+.+.+|++|+++++.|.+       + +++..++ +|++|++++|.++.++...++++|++|++++|.+..+       
T Consensus        40 ~~~l~~l~~L~l~~~~I~~-------l-~gl~~L~-nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i-------  103 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKS-------I-DGVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------  103 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCC-------C-TTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-------
T ss_pred             HHHhCCCCEEECCCCCCCC-------c-cccccCC-CCCEEeCcCCcCCCCccccCCcccccccccccccccc-------
Confidence            3456677777777777763       2 3566665 7777777777777777655777777777777776542       


Q ss_pred             cCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCE
Q 042875          105 VPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEV  184 (432)
Q Consensus       105 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  184 (432)
                       + .++.+++|+.++++++...+ ++.......+.......+......................... ...+...+....
T Consensus       104 -~-~l~~l~~L~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  179 (384)
T d2omza2         104 -T-PLANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-LKPLANLTTLER  179 (384)
T ss_dssp             -G-GGTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-CGGGTTCTTCCE
T ss_pred             -c-cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccch-hhhhcccccccc
Confidence             2 25677777777777654433 2333333444444444433221111111111111111100011 112222333333


Q ss_pred             EeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCC
Q 042875          185 LDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKL  264 (432)
Q Consensus       185 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  264 (432)
                      .....+..  ........+++++.+.++++...+..+  ...+++|+++++++|.++.++ .+..+++++.+++.+|.+.
T Consensus       180 ~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~  254 (384)
T d2omza2         180 LDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS  254 (384)
T ss_dssp             EECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC
T ss_pred             cccccccc--ccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccC
Confidence            33333221  123335566777778877766554332  345677888888887777654 4667778888888877655


Q ss_pred             CccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhc
Q 042875          265 DKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAY  344 (432)
Q Consensus       265 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  344 (432)
                      +..  .+..+++|++++++++.+..++ .+..++.++.+.+..|...+ +..  +..+++++.|++++|.+.+++. +..
T Consensus       255 ~~~--~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~l~~l~~~~n~l~~-~~~--~~~~~~l~~L~ls~n~l~~l~~-l~~  327 (384)
T d2omza2         255 NLA--PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLED-ISP--ISNLKNLTYLTLYFNNISDISP-VSS  327 (384)
T ss_dssp             CCG--GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCSC-CGG--GGGCTTCSEEECCSSCCSCCGG-GGG
T ss_pred             CCC--cccccccCCEeeccCcccCCCC-cccccccccccccccccccc-ccc--cchhcccCeEECCCCCCCCCcc-ccc
Confidence            432  2566778888888777776554 35566777788777776443 221  3456778888888888877653 677


Q ss_pred             CCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccC-CCCCCccEEeccCC
Q 042875          345 LSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLP-ALPLCLKYLHLTGC  400 (432)
Q Consensus       345 ~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~c  400 (432)
                      +++|++|++++|+++.++ .++.+++|++|++++|++.+..| ..+++|+.|++++|
T Consensus       328 l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         328 LTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             CCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            788888888888877765 47778888888888877554333 33456777777664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2.4e-24  Score=199.37  Aligned_cols=334  Identities=17%  Similarity=0.199  Sum_probs=238.9

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNL   89 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l   89 (432)
                      |+++++.+..+  +.+..+++|++|++++|++++       ++ .++.++ +|++|++++|.+..++...++++|+.|++
T Consensus        49 L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-------l~-~l~~L~-~L~~L~L~~n~i~~i~~l~~l~~L~~L~~  117 (384)
T d2omza2          49 LQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-------IT-PLKNLT-KLVDILMNNNQIADITPLANLTNLTGLTL  117 (384)
T ss_dssp             EECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-------CG-GGTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             EECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-------Cc-cccCCc-ccccccccccccccccccccccccccccc
Confidence            55677766665  478899999999999999985       44 478886 99999999999998888789999999999


Q ss_pred             ccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCCCCCccEEEecccc
Q 042875           90 RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSA  168 (432)
Q Consensus        90 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~  168 (432)
                      +++.++...         .......+.......+....... ...................  ...............+.
T Consensus       118 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         118 FNNQITDID---------PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK--PLANLTTLERLDISSNK  186 (384)
T ss_dssp             CSSCCCCCG---------GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             ccccccccc---------cccccccccccccccccccccccccccccccccccccccchhh--hhccccccccccccccc
Confidence            999887532         12333444555444433222111 1111111111111111111  11111122222222222


Q ss_pred             cccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccC
Q 042875          169 IEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFE  248 (432)
Q Consensus       169 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  248 (432)
                       .........++.++.+++++|...+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.++++++.++.++. +.
T Consensus       187 -~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-~~  260 (384)
T d2omza2         187 -VSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAP-LS  260 (384)
T ss_dssp             -CCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred             -cccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cc-hhhcccccchhccccCccCCCCc-cc
Confidence             2234456678899999999987655433  4567899999999986543 33 57788999999999999887654 77


Q ss_pred             CCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEE
Q 042875          249 NLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLL  328 (432)
Q Consensus       249 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  328 (432)
                      .+++|++++++++.+.+..  .+..++.++.+.+..+.+..++ .+..+++++++++++|.+.+ ++.  +..+++|++|
T Consensus       261 ~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~-l~~--l~~l~~L~~L  334 (384)
T d2omza2         261 GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISD-ISP--VSSLTKLQRL  334 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSC-CGG--GGGCTTCCEE
T ss_pred             ccccCCEeeccCcccCCCC--cccccccccccccccccccccc-ccchhcccCeEECCCCCCCC-Ccc--cccCCCCCEE
Confidence            8899999999998765432  3667888999999988887643 57888999999999998654 332  4578999999


Q ss_pred             EeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCC
Q 042875          329 YIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRC  379 (432)
Q Consensus       329 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~  379 (432)
                      ++++|.++.++ .++.+++|++|++++|+++.+++ ++++++|+.|++++|
T Consensus       335 ~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         335 FFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             ECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            99999999877 58899999999999999998865 889999999999986

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=3.7e-24  Score=192.24  Aligned_cols=246  Identities=20%  Similarity=0.276  Sum_probs=192.0

Q ss_pred             ccEEEecccccc---cccccccCCCCCCEEeecc-ccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeee
Q 042875          159 ITRLYLDQSAIE---EVPSSIECLTDLEVLDLRD-CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRIN  234 (432)
Q Consensus       159 L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  234 (432)
                      ++.|++.++.+.   .+|..++++++|++|++++ |.+.+.+|+.+.++++|++|++++|.+.+..+..+..+..|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            444455444432   5778888899999999987 567778888899999999999999888877777788888999999


Q ss_pred             ecccccc-ccCcccCCCCCccEEeecCCCCCCccccccCCcccc-ccccccccccc-ccCccccCCCCCcEEeccCCCCC
Q 042875          235 LDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESL-RHISAAGSAIS-QLPSSVADSNALLILDFSRCKGL  311 (432)
Q Consensus       235 l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~  311 (432)
                      ++.|.+. .+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|.+. ..+..+..+. ...+++..+...
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~  210 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred             cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            9888777 677788889999999999988888888877777665 77888888887 4445555544 446888877765


Q ss_pred             CCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccCCC--
Q 042875          312 VSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPAL--  388 (432)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~--  388 (432)
                      +..+.. +..++.++.++++++.+...+..++.+++|+.|++++|+++ .+|+.++++++|++|+|++|++.+.+|+.  
T Consensus       211 ~~~~~~-~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~  289 (313)
T d1ogqa_         211 GDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             ECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCccc
Confidence            555553 44678899999999988776667888899999999999998 88999999999999999999988788853  


Q ss_pred             CCCccEEeccCCCCcccc
Q 042875          389 PLCLKYLHLTGCNMLRSL  406 (432)
Q Consensus       389 ~~~L~~L~l~~c~~l~~l  406 (432)
                      +.+|+.+++.+|+.+...
T Consensus       290 L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         290 LQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGGSCGGGTCSSSEEEST
T ss_pred             CCCCCHHHhCCCccccCC
Confidence            356777777776655543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=1.7e-23  Score=187.87  Aligned_cols=252  Identities=21%  Similarity=0.282  Sum_probs=151.5

Q ss_pred             CceeeeeccccccccCCCcccccCCcccCcccCceEeccC-CccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccE
Q 042875           83 NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEG-CKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITR  161 (432)
Q Consensus        83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~  161 (432)
                      ++++|+++++.++..  ..   +|+.++++++|++|++++ |.+.+.+|                               
T Consensus        51 ~v~~L~L~~~~l~g~--~~---lp~~l~~L~~L~~L~Ls~~N~l~g~iP-------------------------------   94 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKP--YP---IPSSLANLPYLNFLYIGGINNLVGPIP-------------------------------   94 (313)
T ss_dssp             CEEEEEEECCCCSSC--EE---CCGGGGGCTTCSEEEEEEETTEESCCC-------------------------------
T ss_pred             EEEEEECCCCCCCCC--CC---CChHHhcCccccccccccccccccccc-------------------------------
Confidence            577777777766531  13   566667777777776665 33333443                               


Q ss_pred             EEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875          162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT  241 (432)
Q Consensus       162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  241 (432)
                                  ..++++++|++|++++|++.+..+..+..+..|+.+++++|.....+|..+..++.++.+++++|.+.
T Consensus        95 ------------~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_          95 ------------PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             ------------GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ------------cccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccc
Confidence                        44444444555555544444444444444445555555544444444444555555555555555444


Q ss_pred             -ccCcccCCCCCc-cEEeecCCCCCCccccccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhh
Q 042875          242 -ELPSSFENLPGL-EELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSL  318 (432)
Q Consensus       242 -~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  318 (432)
                       .+|..+..+..+ +.+.++.|.+.+..+..+..+..+ .+++..+... ..+..+..+++++.+++.++.+....+.  
T Consensus       163 ~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~--  239 (313)
T d1ogqa_         163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--  239 (313)
T ss_dssp             EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--
T ss_pred             cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc--
Confidence             344444444443 445555554444444444333322 3455544443 4445556666777777777665444332  


Q ss_pred             hcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccC
Q 042875          319 LLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLP  386 (432)
Q Consensus       319 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~  386 (432)
                      +..+++++.|++++|+++. +|..++.+++|++|+|++|+++ .+|+ ++++++|+.+++++|+.+...|
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            4467889999999999984 9999999999999999999999 7774 5788999999999998655443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=4.9e-20  Score=164.41  Aligned_cols=263  Identities=19%  Similarity=0.230  Sum_probs=129.8

Q ss_pred             cceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCC-cccCcccCceEeccCCccCCcCC-CCCCCCCce
Q 042875           62 LRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPS-SIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPV  139 (432)
Q Consensus        62 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~  139 (432)
                      .+.++-++..++.+|..+ .+++++|++++|.++.        +++ .|.++++|++|++++|......+ .+.++++|+
T Consensus        12 ~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~--------l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~   82 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITE--------IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE   82 (305)
T ss_dssp             TTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCC--------BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCEEEecCCCCCccCCCC-CCCCCEEECcCCcCCC--------cChhHhhccccccccccccccccccchhhhhCCCccC
Confidence            444454555555555544 2456666666666554        222 35566666666666655444333 234456666


Q ss_pred             EEEecCcccccccCCCCCCccEEEecccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc
Q 042875          140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE  218 (432)
Q Consensus       140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  218 (432)
                      .|++++|.+..--......++.|.+.++.+..++. .+........++...+....                      ..
T Consensus        83 ~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------------~~  140 (305)
T d1xkua_          83 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SG  140 (305)
T ss_dssp             EEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GG
T ss_pred             EecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccc----------------------cC
Confidence            66665554332111122233344443333333322 22233333444433332111                      11


Q ss_pred             cchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCC
Q 042875          219 RFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADS  297 (432)
Q Consensus       219 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~  297 (432)
                      ..+..+..+++|+.++++++.+..++..  .+++++.|++++|......+..+.+++.++.|++++|.+..+ +..+..+
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             CCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc
Confidence            1222344445555555555555444332  234555555555555544445555555566666655555533 3344555


Q ss_pred             CCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch-------hhhcCCCCCEEEeeCCCCc
Q 042875          298 NALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ-------EIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~L~~L~l~~n~l~  359 (432)
                      ++|++|++++|.+ ..++.. +..+++|++|++++|+++.++.       .....++|+.|++++|.++
T Consensus       219 ~~L~~L~L~~N~L-~~lp~~-l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         219 PHLRELHLNNNKL-VKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTCCEEECCSSCC-SSCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccceeeecccccc-cccccc-cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            6666666666643 233332 3355666666666666665432       1234577888888888776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=8.1e-20  Score=162.96  Aligned_cols=261  Identities=15%  Similarity=0.145  Sum_probs=181.2

Q ss_pred             CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC--CCCCCCCceEEEecCcccccccCCCCCCcc
Q 042875           83 NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVTLIEFPQISGKIT  160 (432)
Q Consensus        83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~  160 (432)
                      .++.++-++..++.        +|..+.  +++++|++++|.+. .++  .+.++++|++|++++|.....         
T Consensus        11 ~~~~~~C~~~~L~~--------lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i---------   70 (305)
T d1xkua_          11 HLRVVQCSDLGLEK--------VPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKI---------   70 (305)
T ss_dssp             ETTEEECTTSCCCS--------CCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCB---------
T ss_pred             cCCEEEecCCCCCc--------cCCCCC--CCCCEEECcCCcCC-CcChhHhhcccccccccccccccccc---------
Confidence            45677777777765        555443  57889999987543 444  356688888888888765521         


Q ss_pred             EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccc
Q 042875          161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI  240 (432)
Q Consensus       161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  240 (432)
                                 .|..+.++++|+.+++++|++.. ++..  ....++.|...++......+..+......+.+....+..
T Consensus        71 -----------~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~  136 (305)
T d1xkua_          71 -----------SPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL  136 (305)
T ss_dssp             -----------CTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred             -----------chhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccc
Confidence                       23456778888888888876543 3432  245778888887766655555666677777787777654


Q ss_pred             c---ccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCch
Q 042875          241 T---ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPR  316 (432)
Q Consensus       241 ~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~  316 (432)
                      .   ..+..+..+++|+.+++.+|.+.. ++..  .++++++|++++|... ..+..+..++.+++|++++|...+ ++.
T Consensus       137 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~-~~~  212 (305)
T d1xkua_         137 KSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDN  212 (305)
T ss_dssp             CGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECT
T ss_pred             cccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccc-ccc
Confidence            4   334567788999999999987653 4433  3689999999998877 445667778888888888876443 333


Q ss_pred             hhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccCh-------hccCCCCCCeeeccCCCC
Q 042875          317 SLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPA-------SIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       317 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-------~~~~l~~L~~L~l~~~~~  381 (432)
                      ..+.++++|++|++++|.++++|..+..+++|++|++++|+++.++.       ......+|+.+++++|++
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            44556778888888888888887777778888888888887776543       123455667777777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=2.1e-18  Score=156.96  Aligned_cols=315  Identities=21%  Similarity=0.243  Sum_probs=172.0

Q ss_pred             ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCc
Q 042875           29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSS  108 (432)
Q Consensus        29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  108 (432)
                      .++++||++++.++       .+|+.   .+ +|++|++++|.++.+|...  .+|++|++++|.++.+.  .   +|  
T Consensus        38 ~~l~~LdLs~~~L~-------~lp~~---~~-~L~~L~Ls~N~l~~lp~~~--~~L~~L~l~~n~l~~l~--~---lp--   97 (353)
T d1jl5a_          38 RQAHELELNNLGLS-------SLPEL---PP-HLESLVASCNSLTELPELP--QSLKSLLVDNNNLKALS--D---LP--   97 (353)
T ss_dssp             HTCSEEECTTSCCS-------CCCSC---CT-TCSEEECCSSCCSSCCCCC--TTCCEEECCSSCCSCCC--S---CC--
T ss_pred             cCCCEEEeCCCCCC-------CCCCC---CC-CCCEEECCCCCCcccccch--hhhhhhhhhhcccchhh--h---hc--
Confidence            46889999999887       56642   34 8999999999999888764  58999999999887531  1   21  


Q ss_pred             ccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeec
Q 042875          109 IQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLR  188 (432)
Q Consensus       109 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  188 (432)
                          +.|++|++++|.. ..+|....+++|++++++++... ..+.....+..+.+.+..... ...+..++.++.+.+.
T Consensus        98 ----~~L~~L~L~~n~l-~~lp~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_          98 ----PLLEYLGVSNNQL-EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD  170 (353)
T ss_dssp             ----TTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred             ----ccccccccccccc-ccccchhhhccceeecccccccc-ccccccccccchhhccccccc-cccccccccceecccc
Confidence                4688999998764 46777777889999999887654 334444555555554433322 1234445555555555


Q ss_pred             cccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccc
Q 042875          189 DCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLP  268 (432)
Q Consensus       189 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  268 (432)
                      ++..... +.   .....+.+.                        .....+..++ ....++.++.+++++|.... ++
T Consensus       171 ~n~~~~~-~~---~~~~~~~l~------------------------~~~~~~~~~~-~~~~l~~L~~l~l~~n~~~~-~~  220 (353)
T d1jl5a_         171 NNSLKKL-PD---LPLSLESIV------------------------AGNNILEELP-ELQNLPFLTTIYADNNLLKT-LP  220 (353)
T ss_dssp             SSCCSSC-CC---CCTTCCEEE------------------------CCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred             ccccccc-cc---ccccccccc------------------------cccccccccc-cccccccccccccccccccc-cc
Confidence            5433221 10   011112222                        2222222222 12344445555554443221 11


Q ss_pred             cccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCC
Q 042875          269 DNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSL  348 (432)
Q Consensus       269 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  348 (432)
                      .   ...++..+.+.++.+...+..   .+.+...++..+.... +.    .-.......++..+.+..++   ..+++|
T Consensus       221 ~---~~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~-l~----~l~~~~~~~~~~~~~~~~~~---~~~~~L  286 (353)
T d1jl5a_         221 D---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LS----ELPPNLYYLNASSNEIRSLC---DLPPSL  286 (353)
T ss_dssp             S---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ES----CCCTTCCEEECCSSCCSEEC---CCCTTC
T ss_pred             c---ccccccccccccccccccccc---cccccccccccccccc-cc----cccchhcccccccCcccccc---ccCCCC
Confidence            1   122333333333333322211   1223333333322111 00    01123334444444444432   234677


Q ss_pred             CEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCCCCCCccEEeccCCCCccccCCCCCccceeccc
Q 042875          349 KSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDAT  419 (432)
Q Consensus       349 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~  419 (432)
                      ++|++++|+++.+|..   +++|+.|++++|++ +.+|+.+.+|++|++++|+ ++.+|..+.+|+.|.+.
T Consensus       287 ~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L-~~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~~  352 (353)
T d1jl5a_         287 EELNVSNNKLIELPAL---PPRLERLIASFNHL-AEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRMN  352 (353)
T ss_dssp             CEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred             CEEECCCCccCccccc---cCCCCEEECCCCcC-CccccccCCCCEEECcCCc-CCCCCccccccCeeECc
Confidence            7777777777766643   46677777777664 4566666677777777764 66777766677776654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=3.3e-18  Score=155.56  Aligned_cols=307  Identities=22%  Similarity=0.267  Sum_probs=202.7

Q ss_pred             hhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCce
Q 042875           60 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPV  139 (432)
Q Consensus        60 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~  139 (432)
                      .++++|+++++.++.+|..  +++|++|++++|.++.        +|+.   +.+|+.|++++|... .++         
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~--------lp~~---~~~L~~L~l~~n~l~-~l~---------   94 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTE--------LPEL---PQSLKSLLVDNNNLK-ALS---------   94 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSS--------CCCC---CTTCCEEECCSSCCS-CCC---------
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcc--------cccc---hhhhhhhhhhhcccc-hhh---------
Confidence            3688999999888888864  4688999999888875        4533   346777777775432 222         


Q ss_pred             EEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCccc
Q 042875          140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER  219 (432)
Q Consensus       140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  219 (432)
                                    ...+.|++|++.+|.+..+|. ++.+++|+.++++++...... .   ....+..+.+..+.... 
T Consensus        95 --------------~lp~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~~-  154 (353)
T d1jl5a_          95 --------------DLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEE-  154 (353)
T ss_dssp             --------------SCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS-
T ss_pred             --------------hhccccccccccccccccccc-hhhhccceeeccccccccccc-c---ccccccchhhccccccc-
Confidence                          122345555555555566664 567888999998887654322 1   24556666665543322 


Q ss_pred             chHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCC
Q 042875          220 FPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNA  299 (432)
Q Consensus       220 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  299 (432)
                       ...+..++.++.+.++.+.....+...   ...+.+....+ ....++ ....++.++.+++.++....++.   ...+
T Consensus       155 -~~~l~~l~~l~~L~l~~n~~~~~~~~~---~~~~~l~~~~~-~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~---~~~~  225 (353)
T d1jl5a_         155 -LPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTLPD---LPPS  225 (353)
T ss_dssp             -CCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCS---CCTT
T ss_pred             -cccccccccceeccccccccccccccc---ccccccccccc-cccccc-ccccccccccccccccccccccc---cccc
Confidence             223556778888888887776544322   23344554443 233333 35678888999988887665543   3455


Q ss_pred             CcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCC
Q 042875          300 LLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRC  379 (432)
Q Consensus       300 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~  379 (432)
                      +..+.+..+..... +.    ....+...++..+....+..   ........++..+.+..++.   .+++|++|++++|
T Consensus       226 l~~~~~~~~~~~~~-~~----~~~~l~~~~~~~~~~~~l~~---l~~~~~~~~~~~~~~~~~~~---~~~~L~~L~Ls~N  294 (353)
T d1jl5a_         226 LEALNVRDNYLTDL-PE----LPQSLTFLDVSENIFSGLSE---LPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNN  294 (353)
T ss_dssp             CCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCSEESC---CCTTCCEEECCSSCCSEECC---CCTTCCEEECCSS
T ss_pred             cccccccccccccc-cc----cccccccccccccccccccc---ccchhcccccccCccccccc---cCCCCCEEECCCC
Confidence            77777777654322 11    34566677766665554322   12355667777777765543   4689999999999


Q ss_pred             CCCcccCCCCCCccEEeccCCCCccccCCCCCccceeccccccccccCCCCCC
Q 042875          380 NMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS  432 (432)
Q Consensus       380 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~lp~~p~  432 (432)
                      ++ +.+|..+++|++|++.+| .++.+|..+.+|++|++++| +++.+|++|.
T Consensus       295 ~l-~~lp~~~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N-~L~~lp~~~~  344 (353)
T d1jl5a_         295 KL-IELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVEYN-PLREFPDIPE  344 (353)
T ss_dssp             CC-SCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCCCCT
T ss_pred             cc-CccccccCCCCEEECCCC-cCCccccccCCCCEEECcCC-cCCCCCcccc
Confidence            85 478888889999999886 58899998889999999997 5999999984

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-18  Score=153.47  Aligned_cols=201  Identities=21%  Similarity=0.287  Sum_probs=115.8

Q ss_pred             CCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc-cccccc-CcccCCCCCccEEee
Q 042875          181 DLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG-TAITEL-PSSFENLPGLEELFV  258 (432)
Q Consensus       181 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~-~~~~~~l~~L~~L~l  258 (432)
                      .+++|++++|.+.+..+.+|.++++|+.|+++++.+....+..+.....++.+.+.. +.++.+ +..+..+++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            445555555544333333455555555555555544444444444455555554432 333333 334555666666666


Q ss_pred             cCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC
Q 042875          259 SDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME  337 (432)
Q Consensus       259 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  337 (432)
                      +.|......+..+..+++|+.+++.+|.+..++ ..+..++++++|++++|.+ ..++...+.++++|+.+++++|+++.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc-cccchhhhccccccchhhhhhccccc
Confidence            666554444444555566666666666666543 3455566677777766653 33444445566777777777777776


Q ss_pred             -CchhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccCCCCC
Q 042875          338 -IPQEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNML  382 (432)
Q Consensus       338 -~~~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~  382 (432)
                       .|..+..+++|++|++++|++..++ ..++.+++|++|++++|++.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence             4566677777777777777777554 45667777777777777653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.2e-18  Score=150.13  Aligned_cols=195  Identities=19%  Similarity=0.238  Sum_probs=113.6

Q ss_pred             ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875          159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT  238 (432)
Q Consensus       159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  238 (432)
                      +..++..++++..+|..+.  +.+++|++++|.+.+..+..|..+++|++|++++|.+. .++ .+..+++|++|++++|
T Consensus        12 ~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSS
T ss_pred             CeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccccc
Confidence            3344555556666666553  46777777777665544456677777777777776544 333 2356677777777777


Q ss_pred             cccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCcc-ccCCCCCcEEeccCCCCCCCCchh
Q 042875          239 AITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS-VADSNALLILDFSRCKGLVSLPRS  317 (432)
Q Consensus       239 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~  317 (432)
                      +++..+..+..+++|+.|+++++......+..+..+.+++++++.+|.+..++.. +..++.++.+++++|.+. .++..
T Consensus        88 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-~~~~~  166 (266)
T d1p9ag_          88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG  166 (266)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTT
T ss_pred             cccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc-ccCcc
Confidence            7776666677777777777777766555455555666666666666666544332 333455555555555432 22222


Q ss_pred             hhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCC
Q 042875          318 LLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNF  358 (432)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  358 (432)
                      .+..+++|++|++++|+++.+|..+..+++|+.|+|++|.+
T Consensus       167 ~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            33344555555555555555554444455555555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.6e-18  Score=150.96  Aligned_cols=91  Identities=18%  Similarity=0.128  Sum_probs=65.4

Q ss_pred             cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCcc
Q 042875          175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLE  254 (432)
Q Consensus       175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~  254 (432)
                      .+..+.+++.+++.+|.+....+..+..+++++.+++++|.+....+..+..+++|++|++++|+++.+|..+..+++|+
T Consensus       119 ~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~  198 (266)
T d1p9ag_         119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP  198 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCS
T ss_pred             ccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCC
Confidence            34456677777777776555545556667777777777777666556667777888888888888887777777788888


Q ss_pred             EEeecCCCCCC
Q 042875          255 ELFVSDCSKLD  265 (432)
Q Consensus       255 ~L~l~~~~~~~  265 (432)
                      .|++++|++..
T Consensus       199 ~L~L~~Np~~C  209 (266)
T d1p9ag_         199 FAFLHGNPWLC  209 (266)
T ss_dssp             EEECCSCCBCC
T ss_pred             EEEecCCCCCC
Confidence            88888876643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.7e-18  Score=149.10  Aligned_cols=134  Identities=21%  Similarity=0.279  Sum_probs=58.1

Q ss_pred             cCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC-cccCCCCCccE
Q 042875          177 ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP-SSFENLPGLEE  255 (432)
Q Consensus       177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~  255 (432)
                      .++++|++|++++|......+..+....+|+.+++.+|.+....+..+..+++|+.|++++|+++.++ ..+..+++|+.
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccch
Confidence            33344444444444333222233333444444444444333322333444444444444444444332 23344444444


Q ss_pred             EeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCC
Q 042875          256 LFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKG  310 (432)
Q Consensus       256 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~  310 (432)
                      +++.+|.+.+..|..+..+++|+++++++|.+..++ ..++.+++|+++++++|+.
T Consensus       182 l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             hhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            444444444444444444445555555555444333 2344455555555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=7.4e-17  Score=136.83  Aligned_cols=102  Identities=11%  Similarity=0.086  Sum_probs=62.3

Q ss_pred             cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCC
Q 042875           28 MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPS  107 (432)
Q Consensus        28 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  107 (432)
                      +.++..++++.+++.+        ......+. +|++|++.++.++.++....+++|++|++++|.++.+        + 
T Consensus        18 l~~~~~~~l~~~~~~d--------~~~~~~l~-~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~--------~-   79 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTD--------TVTQADLD-GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--------A-   79 (227)
T ss_dssp             HHHHHHHHTTCSSTTS--------EECHHHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--------G-
T ss_pred             HHHHHHHHhCCCCcCC--------cCCHHHcC-CcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecc--------c-
Confidence            3344445666656553        11334453 7777777777777776555777777777777776532        1 


Q ss_pred             cccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCccc
Q 042875          108 SIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVT  148 (432)
Q Consensus       108 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  148 (432)
                      .+..+++++.+++++|.. +.++.+.++++|+.++++++..
T Consensus        80 ~l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~l~l~~~~~  119 (227)
T d1h6ua2          80 PLKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQI  119 (227)
T ss_dssp             GGTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSCC
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccc
Confidence            256777777777776543 3455555666666666666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.6e-16  Score=134.74  Aligned_cols=202  Identities=14%  Similarity=0.172  Sum_probs=137.0

Q ss_pred             eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeee
Q 042875           10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNL   89 (432)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l   89 (432)
                      +++++++..++  ..++.+.+|++|++.+|.+.       .+ .++..++ +|++|++++|.++.+....++++|+++++
T Consensus        24 ~~l~~~~~~d~--~~~~~l~~L~~L~l~~~~i~-------~l-~~l~~l~-~L~~L~ls~n~i~~~~~l~~l~~l~~l~~   92 (227)
T d1h6ua2          24 IAAGKSNVTDT--VTQADLDGITTLSAFGTGVT-------TI-EGVQYLN-NLIGLELKDNQITDLAPLKNLTKITELEL   92 (227)
T ss_dssp             HHTTCSSTTSE--ECHHHHHTCCEEECTTSCCC-------CC-TTGGGCT-TCCEEECCSSCCCCCGGGTTCCSCCEEEC
T ss_pred             HHhCCCCcCCc--CCHHHcCCcCEEECCCCCCC-------cc-hhHhcCC-CCcEeecCCceeecccccccccccccccc
Confidence            45555544443  46788999999999999997       44 4688887 99999999999998887779999999999


Q ss_pred             ccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEeccccc
Q 042875           90 RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAI  169 (432)
Q Consensus        90 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~  169 (432)
                      ++|.++.+         +.+..+++|+.+.++++... .+..+...+.++.+.++.+.....                  
T Consensus        93 ~~n~~~~i---------~~l~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~------------------  144 (227)
T d1h6ua2          93 SGNPLKNV---------SAIAGLQSIKTLDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNI------------------  144 (227)
T ss_dssp             CSCCCSCC---------GGGTTCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECCSSCCCCC------------------
T ss_pred             cccccccc---------cccccccccccccccccccc-ccchhccccchhhhhchhhhhchh------------------
Confidence            99988753         23678999999999987543 344455567777777766654321                  


Q ss_pred             ccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCC
Q 042875          170 EEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFEN  249 (432)
Q Consensus       170 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  249 (432)
                          ..+..+++|+.|++.+|......  .+.++++|+.|++++|.+. .++ .+..+++|++|++++|++++++ .+..
T Consensus       145 ----~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L~Ls~N~lt~i~-~l~~  215 (227)
T d1h6ua2         145 ----SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVS-PLAN  215 (227)
T ss_dssp             ----GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECTTSCCCBCG-GGTT
T ss_pred             ----hhhccccccccccccccccccch--hhcccccceecccCCCccC-CCh-hhcCCCCCCEEECcCCcCCCCc-cccc
Confidence                12334566666666666543221  2555666666666665443 232 2556666666666666666554 2556


Q ss_pred             CCCccEEeec
Q 042875          250 LPGLEELFVS  259 (432)
Q Consensus       250 l~~L~~L~l~  259 (432)
                      +++|+.|+++
T Consensus       216 l~~L~~L~ls  225 (227)
T d1h6ua2         216 TSNLFIVTLT  225 (227)
T ss_dssp             CTTCCEEEEE
T ss_pred             CCCCCEEEee
Confidence            6666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.7e-18  Score=159.66  Aligned_cols=225  Identities=19%  Similarity=0.158  Sum_probs=120.5

Q ss_pred             cCCCCCCEEeecccccccc----ccchh-cCCCCccEEEecCccCccc----chHhhhcCCCCCeeeecccccc------
Q 042875          177 ECLTDLEVLDLRDCKRLKR----ISTRF-CKLRSLVDLFVNGCLNLER----FPEILEKMEHLKRINLDGTAIT------  241 (432)
Q Consensus       177 ~~~~~L~~L~l~~~~~~~~----~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~------  241 (432)
                      ...+.++.+.++++.....    ....+ ........+.+..+.....    ....+.....++.+.++.+.+.      
T Consensus       166 ~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~  245 (460)
T d1z7xw1         166 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE  245 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccch
Confidence            3445666666666543321    11111 1123345555555433322    2233445667777777776554      


Q ss_pred             ccCcccCCCCCccEEeecCCCCCCcc----ccccCCcccccccccccccccc-----cCcc-ccCCCCCcEEeccCCCCC
Q 042875          242 ELPSSFENLPGLEELFVSDCSKLDKL----PDNIGNLESLRHISAAGSAISQ-----LPSS-VADSNALLILDFSRCKGL  311 (432)
Q Consensus       242 ~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~-----~~~~-~~~~~~L~~L~l~~~~~~  311 (432)
                      ...........++.+++++|.+....    ...+...+.++.+++++|.+..     +... ......|+.++++++...
T Consensus       246 ~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~  325 (460)
T d1z7xw1         246 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  325 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchh
Confidence            12223344567777777777554321    1223345667777777776541     1111 123356777777777644


Q ss_pred             CCCchh---hhcCCCCccEEEeeccCCCC-----Cchhhh-cCCCCCEEEeeCCCCcc-----cChhccCCCCCCeeecc
Q 042875          312 VSLPRS---LLLGLSSLGLLYIMNCAVME-----IPQEIA-YLSSLKSLDLRGNNFES-----LPASIKQLSRLCSLDLR  377 (432)
Q Consensus       312 ~~~~~~---~~~~~~~L~~L~l~~~~~~~-----~~~~~~-~~~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~  377 (432)
                      ......   .....++|++|++++|.++.     ++..+. ..+.|++|++++|.++.     +...+..+++|++|+++
T Consensus       326 ~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  405 (460)
T d1z7xw1         326 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  405 (460)
T ss_dssp             GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             hhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECC
Confidence            432221   12244577888888777754     233332 34567888888887762     44556667788888888


Q ss_pred             CCCCCcc--------cCCCCCCccEEeccCCC
Q 042875          378 RCNMLQS--------LPALPLCLKYLHLTGCN  401 (432)
Q Consensus       378 ~~~~~~~--------~~~~~~~L~~L~l~~c~  401 (432)
                      +|++...        +......|+.|++.++.
T Consensus       406 ~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             SSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            7765331        11122357777777754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.2e-18  Score=162.59  Aligned_cols=370  Identities=17%  Similarity=0.165  Sum_probs=218.5

Q ss_pred             eccCCceecccC-chhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCC-----CCCCC--CC
Q 042875           10 LDLSKIKCINLD-PGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRI-----LPSNF--KP   81 (432)
Q Consensus        10 l~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-----l~~~~--~~   81 (432)
                      ||++++.+.+.. ...+..+++++.|+|++|.+++  .....+...+..++ +|++|++++|.++.     +....  ..
T Consensus         7 ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~--~~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~~l~~~~   83 (460)
T d1z7xw1           7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE--ARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPS   83 (460)
T ss_dssp             EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCH--HHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred             EEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCH--HHHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHHHHhcCC
Confidence            455777665543 2456788899999999998764  11223445566776 89999999887752     22222  34


Q ss_pred             CCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCc----CC-CCC-CCCCceEEEecCccccccc---
Q 042875           82 KNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS----FP-SNL-HFVCPVTINFSYCVTLIEF---  152 (432)
Q Consensus        82 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~~-~~~~L~~L~l~~~~~~~~~---  152 (432)
                      .+|++|++++|.+++.....   ++..+..+++|++|++++|.....    +. ... ...................   
T Consensus        84 ~~L~~L~L~~n~it~~~~~~---l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCGV---LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHH---HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCCEEECCCCCcccccccc---ccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence            57999999999887643333   455677888999999988765332    10 000 1112222333222211110   


Q ss_pred             ----CCCCCCccEEEeccccccc-----ccccc-cCCCCCCEEeecccccccc----ccchhcCCCCccEEEecCccCcc
Q 042875          153 ----PQISGKITRLYLDQSAIEE-----VPSSI-ECLTDLEVLDLRDCKRLKR----ISTRFCKLRSLVDLFVNGCLNLE  218 (432)
Q Consensus       153 ----~~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  218 (432)
                          -.....++.+.+.++....     ....+ ........+++..+.....    ....+...+.++.+.+.++....
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence                0122345566665544321     11111 1223455666666544322    22334456778888887765432


Q ss_pred             c-----chHhhhcCCCCCeeeeccccccc-----cCcccCCCCCccEEeecCCCCCCcccc----cc-CCcccccccccc
Q 042875          219 R-----FPEILEKMEHLKRINLDGTAITE-----LPSSFENLPGLEELFVSDCSKLDKLPD----NI-GNLESLRHISAA  283 (432)
Q Consensus       219 ~-----~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~-~~l~~L~~L~l~  283 (432)
                      .     ..........++.++++++.+..     ....+...+.++.+++++|.+......    .+ .....|+.++++
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~  320 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence            2     12223345678888888877661     223345567788888888765432111    11 223567888888


Q ss_pred             cccccc-----cCccccCCCCCcEEeccCCCCCCC----CchhhhcCCCCccEEEeeccCCCC-----CchhhhcCCCCC
Q 042875          284 GSAISQ-----LPSSVADSNALLILDFSRCKGLVS----LPRSLLLGLSSLGLLYIMNCAVME-----IPQEIAYLSSLK  349 (432)
Q Consensus       284 ~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~  349 (432)
                      ++.+..     +.......++|++|++++|.+.+.    +........+.|++|++++|.++.     ++..+..+++|+
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~  400 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  400 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence            776652     223345567899999999875432    222222345779999999999976     455567889999


Q ss_pred             EEEeeCCCCcc-----cChhcc-CCCCCCeeeccCCCCCccc
Q 042875          350 SLDLRGNNFES-----LPASIK-QLSRLCSLDLRRCNMLQSL  385 (432)
Q Consensus       350 ~L~l~~n~l~~-----l~~~~~-~l~~L~~L~l~~~~~~~~~  385 (432)
                      +|++++|.++.     +...+. ....|+.+++.++...+..
T Consensus       401 ~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             EEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            99999999872     223343 3447999999998875433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.6e-15  Score=125.26  Aligned_cols=164  Identities=22%  Similarity=0.286  Sum_probs=87.7

Q ss_pred             CCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccc
Q 042875          204 RSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAA  283 (432)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  283 (432)
                      .+|+.|++++|.+.. ++ .+..+++|++|++++|++++++ .+..+++|+.|++++|.+.. ++ .+..+++|+.+++.
T Consensus        46 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             cCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            344555555543322 11 2445555555555555555443 23455555555555554332 22 24445555555555


Q ss_pred             cccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccCh
Q 042875          284 GSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPA  363 (432)
Q Consensus       284 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~  363 (432)
                      ++.+..++ .+..++.++.+++++|.......   ...+++|+.+++++|++.+++. ++.+++|++|++++|+++.++ 
T Consensus       121 ~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~~---~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~-  194 (210)
T d1h6ta2         121 HNGISDIN-GLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-  194 (210)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-
T ss_pred             cccccccc-ccccccccccccccccccccccc---cccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh-
Confidence            55544332 34455556666666555332211   2245666777777776666543 566677777777777766664 


Q ss_pred             hccCCCCCCeeeccC
Q 042875          364 SIKQLSRLCSLDLRR  378 (432)
Q Consensus       364 ~~~~l~~L~~L~l~~  378 (432)
                      .+..+++|++|++++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            466667777776653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=1e-15  Score=126.71  Aligned_cols=80  Identities=10%  Similarity=0.133  Sum_probs=47.8

Q ss_pred             chhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCC
Q 042875           57 YLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFV  136 (432)
Q Consensus        57 ~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  136 (432)
                      .++ ++++|+++++.++.++....+++|++|++++|.++.        ++ .++++++|+.|++++|.. ..++.+.+++
T Consensus        38 ~l~-~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~--------~~-~l~~l~~L~~L~l~~n~~-~~~~~l~~l~  106 (199)
T d2omxa2          38 DLD-QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD--------IT-PLKNLTKLVDILMNNNQI-ADITPLANLT  106 (199)
T ss_dssp             HHT-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CG-GGTTCTTCCEEECCSSCC-CCCGGGTTCT
T ss_pred             Hhc-CCCEEECCCCCCCCccccccCCCcCcCccccccccC--------cc-cccCCccccccccccccc-cccccccccc
Confidence            443 677777777777666655566777777777776653        22 156666777777666543 2233444555


Q ss_pred             CceEEEecCcc
Q 042875          137 CPVTINFSYCV  147 (432)
Q Consensus       137 ~L~~L~l~~~~  147 (432)
                      .|+.++++++.
T Consensus       107 ~L~~L~l~~~~  117 (199)
T d2omxa2         107 NLTGLTLFNNQ  117 (199)
T ss_dssp             TCSEEECCSSC
T ss_pred             ccccccccccc
Confidence            55555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.2e-16  Score=135.97  Aligned_cols=179  Identities=20%  Similarity=0.268  Sum_probs=96.4

Q ss_pred             CCCCCCEEeecccccccc-ccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc-cccc--ccCcccCCCCCc
Q 042875          178 CLTDLEVLDLRDCKRLKR-ISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG-TAIT--ELPSSFENLPGL  253 (432)
Q Consensus       178 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~--~~~~~~~~l~~L  253 (432)
                      ...+|++|++++|.+... +...+..+++|++|.+.+|...+.....+..+++|++|++++ +.++  .+......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            445778888887765443 344466778888888887766655666677777788887777 3454  222334456777


Q ss_pred             cEEeecCCCCCCc--cccccC-Cccccccccccccc--cc--ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCcc
Q 042875          254 EELFVSDCSKLDK--LPDNIG-NLESLRHISAAGSA--IS--QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLG  326 (432)
Q Consensus       254 ~~L~l~~~~~~~~--~~~~~~-~l~~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  326 (432)
                      ++|++++|....+  +...+. .+++|+.|+++++.  +.  .+...+..+++|++|++++|...++.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            7777777644321  111111 23456666655431  22  22233344555666666555433332222233445555


Q ss_pred             EEEeeccC-CCC-CchhhhcCCCCCEEEeeCC
Q 042875          327 LLYIMNCA-VME-IPQEIAYLSSLKSLDLRGN  356 (432)
Q Consensus       327 ~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~n  356 (432)
                      +|++++|. +++ ....++.+|+|+.|++.+|
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            55555542 332 2233445555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.2e-15  Score=125.72  Aligned_cols=162  Identities=17%  Similarity=0.157  Sum_probs=94.2

Q ss_pred             hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceE
Q 042875           61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVT  140 (432)
Q Consensus        61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~  140 (432)
                      +|++|+++++.++.++....+++|++|++++|.++.+        + .++.+++|+.|++++|.. +.++.+..+++|+.
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l--------~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~  116 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--------K-PLANLKNLGWLFLDENKV-KDLSSLKDLKKLKS  116 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--------G-GGTTCTTCCEEECCSSCC-CCGGGGTTCTTCCE
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc--------c-ccccCccccccccccccc-cccccccccccccc
Confidence            5555555555555555444555555555555555431        1 134555555555555433 23444455555555


Q ss_pred             EEecCcccccc-cCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCccc
Q 042875          141 INFSYCVTLIE-FPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER  219 (432)
Q Consensus       141 L~l~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  219 (432)
                      |++++|..... ....+..++.+++.++.+...+ .+..+++|+.+++++|++.+ ++ .+..+++|++|++++|.+. .
T Consensus       117 L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~  192 (210)
T d1h6ta2         117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-D  192 (210)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-B
T ss_pred             cccccccccccccccccccccccccccccccccc-cccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-C
Confidence            55555543311 1123345555666555554432 45567888888888887654 33 3777888888888887654 4


Q ss_pred             chHhhhcCCCCCeeeecc
Q 042875          220 FPEILEKMEHLKRINLDG  237 (432)
Q Consensus       220 ~~~~l~~l~~L~~L~l~~  237 (432)
                      ++ .+..+++|++|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            54 577888888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=7.4e-15  Score=121.40  Aligned_cols=159  Identities=21%  Similarity=0.340  Sum_probs=70.0

Q ss_pred             CCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCccccccccc
Q 042875          203 LRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISA  282 (432)
Q Consensus       203 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  282 (432)
                      +++++.|+++++.+.. + ..+..+++|++|++++|+++.++. +..+++|+.|++++|.... ++ .+.+++.|+.+++
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc-ccCCccccccccccccccc-cc-ccccccccccccc
Confidence            4555566665554332 2 134455555555555555554432 4555555555555554322 11 2344455555555


Q ss_pred             ccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccC
Q 042875          283 AGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLP  362 (432)
Q Consensus       283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~  362 (432)
                      +++.....+ .+..+++|+.+++++|... .++  .+..+++++.|++.+|.++.++. ++.+++|++|++++|+++.++
T Consensus       114 ~~~~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         114 FNNQITDID-PLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             CSSCCCCCG-GGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccc-ccchhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc
Confidence            444433221 2333444444444444321 111  12234444444444444444332 344444444444444444432


Q ss_pred             hhccCCCCCC
Q 042875          363 ASIKQLSRLC  372 (432)
Q Consensus       363 ~~~~~l~~L~  372 (432)
                       .++++++|+
T Consensus       189 -~l~~L~~L~  197 (199)
T d2omxa2         189 -VLAKLTNLE  197 (199)
T ss_dssp             -GGGGCTTCS
T ss_pred             -cccCCCCCC
Confidence             233444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-16  Score=138.67  Aligned_cols=178  Identities=16%  Similarity=0.197  Sum_probs=86.0

Q ss_pred             CCCCccEEEecCccCccc-chHhhhcCCCCCeeeecccccc-ccCcccCCCCCccEEeecCCCCCCcc--ccccCCcccc
Q 042875          202 KLRSLVDLFVNGCLNLER-FPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKL--PDNIGNLESL  277 (432)
Q Consensus       202 ~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L  277 (432)
                      ...+|+.|++++|.+... +...+..+++|++|+++++.++ ..+..+..+++|++|++++|....+.  .....++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            345677777776654433 3344556667777777666655 33344555666777776665433221  1112345556


Q ss_pred             cccccccc-ccc--ccCccc-cCCCCCcEEeccCCC-CCC-CCchhhhcCCCCccEEEeeccC-CCC-CchhhhcCCCCC
Q 042875          278 RHISAAGS-AIS--QLPSSV-ADSNALLILDFSRCK-GLV-SLPRSLLLGLSSLGLLYIMNCA-VME-IPQEIAYLSSLK  349 (432)
Q Consensus       278 ~~L~l~~~-~~~--~~~~~~-~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~  349 (432)
                      ++|+++++ .+.  .+...+ ..++.|+.|+++++. ..+ .....+...+++|++|++++|. +++ .+..+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            66666554 222  111111 223455555555542 111 1111222344555555555543 232 334445555555


Q ss_pred             EEEeeCC-CCc-ccChhccCCCCCCeeeccCC
Q 042875          350 SLDLRGN-NFE-SLPASIKQLSRLCSLDLRRC  379 (432)
Q Consensus       350 ~L~l~~n-~l~-~l~~~~~~l~~L~~L~l~~~  379 (432)
                      +|++++| .++ .....++++++|++|++.+|
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            5555554 333 22233445555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-14  Score=123.68  Aligned_cols=195  Identities=18%  Similarity=0.213  Sum_probs=100.1

Q ss_pred             CccEEEecccccccccc-cccCCCCCCEEeecccccccccc-chhcCCCCccEEEecCc-cCcccchHhhhcCCCCCeee
Q 042875          158 KITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFVNGC-LNLERFPEILEKMEHLKRIN  234 (432)
Q Consensus       158 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~  234 (432)
                      +++.|++.+|.+..++. .+.++++|++|++++|.....++ ..|..++.++.+.+..+ ......+..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            45666666666666654 45667777777777766554433 34556667777666543 33333444556666666666


Q ss_pred             eccccccccCc--ccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCC
Q 042875          235 LDGTAITELPS--SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLV  312 (432)
Q Consensus       235 l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  312 (432)
                      ++++.+...+.  ....++.+..+...++......+..+..+                      ...++.+++.++... 
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~----------------------~~~l~~L~l~~n~l~-  166 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL----------------------SFESVILWLNKNGIQ-  166 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS----------------------BSSCEEEECCSSCCC-
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccc----------------------cccceeeeccccccc-
Confidence            66666553322  11222233333333322221111122221                      124445555554432 


Q ss_pred             CCchhhhcCCCCccEE-EeeccCCCCCchh-hhcCCCCCEEEeeCCCCcccChh-ccCCCCCCeeec
Q 042875          313 SLPRSLLLGLSSLGLL-YIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFESLPAS-IKQLSRLCSLDL  376 (432)
Q Consensus       313 ~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l  376 (432)
                      .++...+ ...+++++ .+.++.++.+|.. +..+++|++|++++|+++.+|.. +.++++|+.+++
T Consensus       167 ~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         167 EIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             EECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            2222222 23344444 3455667776543 57778888888888888877653 344444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.3e-14  Score=121.54  Aligned_cols=213  Identities=21%  Similarity=0.272  Sum_probs=100.8

Q ss_pred             cEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccch-HhhhcCCCCCeeeecc-
Q 042875          160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFP-EILEKMEHLKRINLDG-  237 (432)
Q Consensus       160 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-  237 (432)
                      +.++..+.+++.+|..+.  +++++|++++|.+....+..|.++++|++|++++|.....++ ..+..++.++++.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            345555555666665542  356666666665443333345566666666666655443322 2344455555555433 


Q ss_pred             cccccc-CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCch
Q 042875          238 TAITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPR  316 (432)
Q Consensus       238 ~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  316 (432)
                      +.+... +..+..+++|+++++.++.+....+  +..+.                    ....+..+....+. ...++.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~~--------------------~l~~l~~~~~~n~~-l~~i~~  145 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIH--------------------SLQKVLLDIQDNIN-IHTIER  145 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CTTTC--------------------BSSCEEEEEESCTT-CCEECT
T ss_pred             ccccccccccccccccccccccchhhhccccc--ccccc--------------------cccccccccccccc-cccccc
Confidence            333322 2233444555555555443322111  11111                    11122222222211 222222


Q ss_pred             hhhcCC-CCccEEEeeccCCCCCchhhhcCCCCCEEE-eeCCCCcccChh-ccCCCCCCeeeccCCCCCcccC-CCCCCc
Q 042875          317 SLLLGL-SSLGLLYIMNCAVMEIPQEIAYLSSLKSLD-LRGNNFESLPAS-IKQLSRLCSLDLRRCNMLQSLP-ALPLCL  392 (432)
Q Consensus       317 ~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~-l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~L  392 (432)
                      ..+..+ ..++.+++.+++++.++......+++..+. +.+|+++.+|.. +.++++|++|++++|++. .+| ..+..+
T Consensus       146 ~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l  224 (242)
T d1xwdc1         146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL  224 (242)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTC
T ss_pred             cccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCC
Confidence            222222 356677777777776655554555555543 455667666543 566777777777776643 333 233444


Q ss_pred             cEEecc
Q 042875          393 KYLHLT  398 (432)
Q Consensus       393 ~~L~l~  398 (432)
                      ..|...
T Consensus       225 ~~L~~l  230 (242)
T d1xwdc1         225 KKLRAR  230 (242)
T ss_dssp             CEEESS
T ss_pred             cccccC
Confidence            444333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=5.9e-15  Score=133.29  Aligned_cols=41  Identities=15%  Similarity=0.103  Sum_probs=20.1

Q ss_pred             CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCC
Q 042875           80 KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGC  123 (432)
Q Consensus        80 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (432)
                      ...++++|++++|.+...+...   +...+...++|+.++++++
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~---l~~~l~~~~~L~~l~l~~~   69 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARW---LSENIASKKDLEIAEFSDI   69 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHH---HHHTTTTCTTCCEEECCSC
T ss_pred             hCCCCCEEECcCCcCCHHHHHH---HHHHHHhCCCCCEEECCCC
Confidence            3455666666666554321111   3333455555656655543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=6.4e-14  Score=114.94  Aligned_cols=126  Identities=20%  Similarity=0.313  Sum_probs=70.4

Q ss_pred             CeeeeccccccccCcccCCCCCccEEeecCCCCCCcc-ccccCCccccccccccccccccc-CccccCCCCCcEEeccCC
Q 042875          231 KRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKL-PDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRC  308 (432)
Q Consensus       231 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~  308 (432)
                      +.++.++++++.+|..+  .+++++|++++|.+...+ +..+.++++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            34556666666666543  246667777776665433 33445566666666666666533 234445555566666555


Q ss_pred             CCCCCCchhhhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCc
Q 042875          309 KGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~  359 (432)
                      .+. .++...|.++++|++|++++|.++.++. .+..+++|++|++++|.+.
T Consensus        89 ~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            432 3333344456666666666666666433 3455666666666666555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=7.7e-14  Score=114.47  Aligned_cols=123  Identities=22%  Similarity=0.256  Sum_probs=59.8

Q ss_pred             EEecccccccccccccCCCCCCEEeeccccccccc-cchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccc
Q 042875          162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRI-STRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI  240 (432)
Q Consensus       162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  240 (432)
                      ++.+++++.++|..+.  +++++|++++|++.... +..|..+++|+.|++++|.+....+..+..+++|++|++++|++
T Consensus        13 v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             EEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            4444444455555442  45555666655554322 33344555555555555555444444555555555555555555


Q ss_pred             cccCc-ccCCCCCccEEeecCCCCCCccccccCCccccccccccccc
Q 042875          241 TELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSA  286 (432)
Q Consensus       241 ~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  286 (432)
                      +.++. .+..+++|++|++++|.+....+.++..+++|+++++++|.
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            54432 34445555555555554443333334444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=2.8e-14  Score=128.72  Aligned_cols=245  Identities=10%  Similarity=0.012  Sum_probs=137.4

Q ss_pred             chhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC------------CCCCCceeeee
Q 042875           22 PGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN------------FKPKNLVELNL   89 (432)
Q Consensus        22 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~------------~~~~~L~~L~l   89 (432)
                      ..++.....|+.|+|++|++.+  .....+...+...+ +|+.++++++........            ..+++|++|++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~--~~~~~l~~~l~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L  100 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGT--EAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  100 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECH--HHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHhhCCCCCEEECcCCcCCH--HHHHHHHHHHHhCC-CCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence            4678889999999999998864  11123344556665 899999988755433221            15678899999


Q ss_pred             ccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC--------------CCCCCCCceEEEecCcccccccCCC
Q 042875           90 RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--------------SNLHFVCPVTINFSYCVTLIEFPQI  155 (432)
Q Consensus        90 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------~~~~~~~L~~L~l~~~~~~~~~~~~  155 (432)
                      ++|.++......   +...+..+++|++|++++|.+...-.              .....+.|+.+.++++.+....   
T Consensus       101 ~~n~i~~~~~~~---l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~---  174 (344)
T d2ca6a1         101 SDNAFGPTAQEP---LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS---  174 (344)
T ss_dssp             CSCCCCTTTHHH---HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG---
T ss_pred             cccccccccccc---hhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccc---
Confidence            888876532222   44455677888888888875432100              0123455666666665433211   


Q ss_pred             CCCccEEEecccccccccccccCCCCCCEEeecccccccc-----ccchhcCCCCccEEEecCccCccc----chHhhhc
Q 042875          156 SGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKR-----ISTRFCKLRSLVDLFVNGCLNLER----FPEILEK  226 (432)
Q Consensus       156 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~  226 (432)
                                   ...+...+..++.++.+++++|.+...     +...+..+++|+.|++++|.+...    +...+..
T Consensus       175 -------------~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         175 -------------MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             -------------HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             -------------cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc
Confidence                         112223344455666666666654321     223344556666666666554322    2344455


Q ss_pred             CCCCCeeeeccccccc-----cCcccC--CCCCccEEeecCCCCCCc----cccccC-Cccccccccccccccc
Q 042875          227 MEHLKRINLDGTAITE-----LPSSFE--NLPGLEELFVSDCSKLDK----LPDNIG-NLESLRHISAAGSAIS  288 (432)
Q Consensus       227 l~~L~~L~l~~~~~~~-----~~~~~~--~l~~L~~L~l~~~~~~~~----~~~~~~-~l~~L~~L~l~~~~~~  288 (432)
                      +++|++|++++|.++.     +...+.  ..+.|++|++++|.+...    +...+. +++.|++|++++|.+.
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            6666666666666551     212222  234566777776654322    122221 3456667777766654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=7.1e-13  Score=99.72  Aligned_cols=103  Identities=18%  Similarity=0.150  Sum_probs=80.9

Q ss_pred             eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeee
Q 042875            9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELN   88 (432)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~   88 (432)
                      .+|+++|.+..+.  .+..+++|++|++++|+++       .+|..++.++ +|+.|++++|.++.++....+++|++|+
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~-------~lp~~~~~l~-~L~~L~l~~N~i~~l~~~~~l~~L~~L~   71 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-------ALPPALAALR-CLEVLQASDNALENVDGVANLPRLQELL   71 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-------CCCGGGGGCT-TCCEEECCSSCCCCCGGGTTCSSCCEEE
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccC-------cchhhhhhhh-cccccccccccccccCccccccccCeEE
Confidence            4678888877664  5888999999999999887       5677778886 8999999999888888777888999999


Q ss_pred             eccccccccCCCcccccCCcccCcccCceEeccCCccCC
Q 042875           89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR  127 (432)
Q Consensus        89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (432)
                      +++|.++.+.      ....++.+++|+.|++++|+...
T Consensus        72 l~~N~i~~~~------~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          72 LCNNRLQQSA------AIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSCCCSSS------TTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCccCCCC------CchhhcCCCCCCEEECCCCcCCc
Confidence            9998887532      11346788888888888876643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.6e-13  Score=105.07  Aligned_cols=100  Identities=21%  Similarity=0.206  Sum_probs=43.4

Q ss_pred             cccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch--hhhcCCCCCEE
Q 042875          274 LESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ--EIAYLSSLKSL  351 (432)
Q Consensus       274 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L  351 (432)
                      +++|+.|++++|.+..++ .+..+++|+.|++++|.+. .++...+..+++|++|++++|.+..++.  .+..+++|++|
T Consensus        40 l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          40 LDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             TTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             cccCCEEECCCCCCCccC-CcccCcchhhhhccccccc-CCCccccccccccccceeccccccccccccccccccccchh
Confidence            334444444444433331 2333344444444444321 1222222234455555555555544332  34455555555


Q ss_pred             EeeCCCCcccCh----hccCCCCCCeee
Q 042875          352 DLRGNNFESLPA----SIKQLSRLCSLD  375 (432)
Q Consensus       352 ~l~~n~l~~l~~----~~~~l~~L~~L~  375 (432)
                      ++++|.++..|.    .+..+++|+.|+
T Consensus       118 ~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         118 CILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             hcCCCccccccchHHHHHHHCCCcCeeC
Confidence            555555554442    234455555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-12  Score=103.65  Aligned_cols=124  Identities=18%  Similarity=0.139  Sum_probs=67.4

Q ss_pred             CCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCcc-ccCCCCCcEEec
Q 042875          227 MEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS-VADSNALLILDF  305 (432)
Q Consensus       227 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l  305 (432)
                      ...+++|++++|+++.++..+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+..++.. +..+++|++|++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            334455555555555444433444555555555554332 21 244555555555555555544433 344566666666


Q ss_pred             cCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch----hhhcCCCCCEEE
Q 042875          306 SRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ----EIAYLSSLKSLD  352 (432)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~  352 (432)
                      ++|.+..-.....+..+++|+.+++++|.++..+.    .+..+|+|+.||
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66654322111234466777788887777766543    467788888776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=5.3e-12  Score=94.83  Aligned_cols=115  Identities=19%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             EEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccC
Q 042875          255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCA  334 (432)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  334 (432)
                      .|++++|.+. .++ .+.++++|++|++++|.+..+|..++.+++|+.|++++|.+.. ++.  +..+++|+++++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~~--~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDG--VANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cCc--cccccccCeEECCCCc
Confidence            4455554443 222 2445555555555555555555555556666666666655332 322  4466777777777777


Q ss_pred             CCCCc--hhhhcCCCCCEEEeeCCCCcccC---h-hccCCCCCCee
Q 042875          335 VMEIP--QEIAYLSSLKSLDLRGNNFESLP---A-SIKQLSRLCSL  374 (432)
Q Consensus       335 ~~~~~--~~~~~~~~L~~L~l~~n~l~~l~---~-~~~~l~~L~~L  374 (432)
                      +..++  ..+..+++|+.|++++|.++..+   . ....+++|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            77654  34667778888888887776332   2 23445666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.07  E-value=2.1e-12  Score=105.89  Aligned_cols=112  Identities=22%  Similarity=0.257  Sum_probs=54.9

Q ss_pred             chHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCC
Q 042875          220 FPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNA  299 (432)
Q Consensus       220 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  299 (432)
                      ++..+..+++|++|++++|.++.++ .+..+++|+.|++++|                        .+..++.....+++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N------------------------~i~~i~~~~~~~~~   94 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN------------------------LIKKIENLDAVADT   94 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEE------------------------EECSCSSHHHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccc------------------------cccccccccccccc
Confidence            4445555555566555555555443 2334444444444444                        33333322222334


Q ss_pred             CcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCc--hhhhcCCCCCEEEeeCCCCc
Q 042875          300 LLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP--QEIAYLSSLKSLDLRGNNFE  359 (432)
Q Consensus       300 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~  359 (432)
                      |+.|++++|.... ++.  +..+++|+.|++++|.++.++  ..+..+++|+.|++++|.+.
T Consensus        95 L~~L~l~~N~i~~-l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          95 LEELWISYNQIAS-LSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CCEEECSEEECCC-HHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccc-ccc--ccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            4444444443221 111  224455666666666666543  24566666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.05  E-value=1.5e-12  Score=106.67  Aligned_cols=19  Identities=5%  Similarity=0.149  Sum_probs=9.0

Q ss_pred             hhcccccceeeeecccccc
Q 042875           24 AFTNMSNLRLLKFYVPKFY   42 (432)
Q Consensus        24 ~~~~l~~L~~L~l~~~~i~   42 (432)
                      ++..+++|++|++++|+|.
T Consensus        43 sl~~L~~L~~L~Ls~n~I~   61 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE   61 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES
T ss_pred             HHhcccccceeECcccCCC
Confidence            4444444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.5e-10  Score=86.49  Aligned_cols=105  Identities=21%  Similarity=0.165  Sum_probs=75.4

Q ss_pred             ccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCC-chhhhcCCCCCEEEeeC
Q 042875          277 LRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEI-PQEIAYLSSLKSLDLRG  355 (432)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~  355 (432)
                      ...++..++.+...+..+..++++++|++.++.....++...+.++++|+.|++++|++..+ +..+..+++|++|+|++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34455555555555666666777777777766656666666666788888888888888885 45577888888888888


Q ss_pred             CCCcccChhccCCCCCCeeeccCCCC
Q 042875          356 NNFESLPASIKQLSRLCSLDLRRCNM  381 (432)
Q Consensus       356 n~l~~l~~~~~~l~~L~~L~l~~~~~  381 (432)
                      |+++.+|...-...+|++|+|++|++
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCcccChhhhccccccccccCCCcc
Confidence            88887776655555788888888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.4e-09  Score=82.69  Aligned_cols=104  Identities=17%  Similarity=0.099  Sum_probs=82.9

Q ss_pred             EEEecccccccccccccCCCCCCEEeecccccccc-ccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875          161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKR-ISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA  239 (432)
Q Consensus       161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  239 (432)
                      .+...+++...+|..+..++++++|++.+++..+. -+.+|.++++|+.|++++|.+....+.+|..+++|++|++++|+
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            34555555666777788888999999987664444 44668889999999999988776667788899999999999999


Q ss_pred             ccccCcccCCCCCccEEeecCCCCC
Q 042875          240 ITELPSSFENLPGLEELFVSDCSKL  264 (432)
Q Consensus       240 ~~~~~~~~~~l~~L~~L~l~~~~~~  264 (432)
                      ++.++.......+++.|++++|++.
T Consensus        92 l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          92 LESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CcccChhhhccccccccccCCCccc
Confidence            9988877666678999999998775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.4e-07  Score=73.75  Aligned_cols=79  Identities=23%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             cchhhhcceeecCCCCCCCCCCCC----CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC
Q 042875           56 EYLPEKLRYLHWDTYPLRILPSNF----KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS  131 (432)
Q Consensus        56 ~~l~~~L~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  131 (432)
                      ..++ +|++|++++|.++.++...    .+++|+.|++++|.++.+...       ......+|+.+++++|+.......
T Consensus        62 ~~~~-~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l-------~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          62 ENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-------DKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHCT-TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH-------HHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             HhCC-CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhh-------hhhhccccceeecCCCCcCcCccc
Confidence            3565 8888888888888776532    678888888888888763211       123445788888888877654321


Q ss_pred             --------CCCCCCceEEE
Q 042875          132 --------NLHFVCPVTIN  142 (432)
Q Consensus       132 --------~~~~~~L~~L~  142 (432)
                              ...+|+|+.||
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence                    34578888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.3e-06  Score=65.72  Aligned_cols=63  Identities=21%  Similarity=0.193  Sum_probs=38.8

Q ss_pred             CCCCccEEEeeccCCCCC---chhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCCCc
Q 042875          321 GLSSLGLLYIMNCAVMEI---PQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQ  383 (432)
Q Consensus       321 ~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~  383 (432)
                      .++.|++|++++|+++.+   +..+..+++|+.|++++|.++.+++ ...+...|+++++++|++..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            355666666666666653   2345567777777777777776543 12234457777777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.66  E-value=9.4e-06  Score=63.37  Aligned_cols=35  Identities=11%  Similarity=0.123  Sum_probs=15.4

Q ss_pred             CCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCC
Q 042875          323 SSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNN  357 (432)
Q Consensus       323 ~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~  357 (432)
                      +.|++|++++|.++.     +...+...++|++|++++|.
T Consensus        72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            344444444444443     22233344445555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.58  E-value=2.7e-05  Score=60.65  Aligned_cols=85  Identities=16%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             CCCCCCEEeecccc-ccc----cccchhcCCCCccEEEecCccCccc----chHhhhcCCCCCeeeecccccc-----cc
Q 042875          178 CLTDLEVLDLRDCK-RLK----RISTRFCKLRSLVDLFVNGCLNLER----FPEILEKMEHLKRINLDGTAIT-----EL  243 (432)
Q Consensus       178 ~~~~L~~L~l~~~~-~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~-----~~  243 (432)
                      +.++|++|++++++ +..    .+...+...+.|+.|++++|.+...    +...+...+.|++|++++|.++     .+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            45677777777643 222    2334455667777777777655432    2344555677777777777766     23


Q ss_pred             CcccCCCCCccEEeecCCC
Q 042875          244 PSSFENLPGLEELFVSDCS  262 (432)
Q Consensus       244 ~~~~~~l~~L~~L~l~~~~  262 (432)
                      ..++...++|++|+++++.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            3456666777777777653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.17  E-value=9.3e-05  Score=57.43  Aligned_cols=56  Identities=11%  Similarity=0.156  Sum_probs=24.9

Q ss_pred             CCccEEEeeccCCCC-----CchhhhcCCCCCEEEee--CCCCc-----ccChhccCCCCCCeeeccC
Q 042875          323 SSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLR--GNNFE-----SLPASIKQLSRLCSLDLRR  378 (432)
Q Consensus       323 ~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~--~n~l~-----~l~~~~~~l~~L~~L~l~~  378 (432)
                      +.++.+++++|.+..     +...+...++|+.++|.  +|.+.     .+...+.+.+.|++|++..
T Consensus        74 ~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          74 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            444555555444433     22334444555554443  23333     2333344555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.83  E-value=0.00018  Score=55.76  Aligned_cols=82  Identities=18%  Similarity=0.210  Sum_probs=40.0

Q ss_pred             cCCCCCCEEeecccc-ccc----cccchhcCCCCccEEEecCccCccc----chHhhhcCCCCCeeeecccccc-----c
Q 042875          177 ECLTDLEVLDLRDCK-RLK----RISTRFCKLRSLVDLFVNGCLNLER----FPEILEKMEHLKRINLDGTAIT-----E  242 (432)
Q Consensus       177 ~~~~~L~~L~l~~~~-~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~-----~  242 (432)
                      .+.+.|++|+++++. +..    .+...+...++|++|++++|.+...    +...+...+.++.++++++.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            345667777776532 211    1333444566666666666644332    2223344555555555555544     1


Q ss_pred             cCcccCCCCCccEEee
Q 042875          243 LPSSFENLPGLEELFV  258 (432)
Q Consensus       243 ~~~~~~~l~~L~~L~l  258 (432)
                      +...+...++|+.+++
T Consensus        94 l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          94 LVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCccccEEee
Confidence            2233444444544444