Citrus Sinensis ID: 042884

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610----
Protein Sequence
NVKIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNERDDNLIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNLIPTRFCH
Secondary Structure (PSIPRED)
cccccccccccHHccccccccEEEccccccccccccccccccccccccEEEccccccccccHHHHHHccccccEEEccccccEEEEccccccccccccEEEccccccccccccccccccccccccEEccccccccccccccccccccccccccEEEcccccccccccHHHHHcccccEEEccccccccccccccccccccccEEEccccccEEccccccccccccccEEEccccccEEEccccHHcccccccccEEEccccccccccccHHHcccccccEEEcccccccccccccHHcccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccHHHHHHcccccEEEEEEEccccccccccccEEEccccccccccHHHHHccccccccccccccccccccHHHHccccccEEccccccccccccHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHcccccccEEEcccccccccccccHHHHcccccccEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHHHccccccEEEEcccccccccccccccccccccccEEEEccccccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHHcccccccEEEcccccccccccHHHcccccccccEEEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHcccccEEEcccccccccccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccHcccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
nvkirdgskllqsmgslpslntlylkhnnftgtattTTQELhnftnleystlsgSSLHISLLQSIASLFPslknlsmsycevngvvrgqgfphfkslehlnmerariapntsFLQIIGestpslkylslsdftlstnssrilDRGLCSLMHLQELYKVNndlrgslpwcVANMTSlrildvssnqltgsiassplahltsieelhlsdnhfripisleplfnhsrlkifdAENNELNAEitesyslttpnFQLQYLLLSsgygdgatfpkflyhqhdleyvdlshtkmngefpnwllenntkLKTLFLVNdslagpfrlpihshkrlrqldvsnnnfqghipleigdilpnlisfnismnaldgsipssfgniNLLKILdlsnnqltgeipehlaVGCVYLDFLALSNNSLEGKVLSLLSGldlscnklighippqignltRIQTLNlshnnltglipstfsnlkhiESLDLSYnklngkiphqlVELKTLEVFSLAFNNlsgeipewKAQFATfnessyegntflcglplpicrspattpeasignerddnlidmdnfFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVvdnliptrfch
Flexible Loop (DISEMBL)
nvkirdgskllqsmgslpSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNERDDNLIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNLIPTRFCH
Low Complexity Region (SEG)
NVKIRDGSKLLQSMGSLPSLNTLYLKHNNFtgtattttQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNERDDNLIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNLIPTRFCH
Disordered region (IsUnstruct)
*******************LNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSP************DDNLIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNLIPTRFC*
Disordered Region (DISOPRED)
NVKIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCG***************************MDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNLIPTRFC*
Disordered Region (DISEMBL)
NVKIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNERDDNLIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNLIPTRFCH
Disordered Region (DISPRO)
*****DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNERDDNLIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNLIPTRFC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NVKIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNERDDNLIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNLIPTRFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	614	2.2.26 [Sep-21-2011]
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.739	0.463	0.320	1e-42
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.840	0.412	0.288	4e-42
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.806	0.449	0.303	2e-40
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.793	0.426	0.288	2e-39
Q9FL28	1173	LRR receptor-like serine/	no	no	0.627	0.328	0.336	3e-39
Q9LHP4	1141	Receptor-like protein kin	no	no	0.798	0.429	0.308	1e-37
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.783	0.403	0.312	2e-37
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.729	0.358	0.291	2e-37
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.610	0.349	0.345	4e-37
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.832	0.488	0.276	1e-36

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 153/478 (32%), Positives = 248/478 (51%), Gaps = 24/478 (5%)

Query: 65  IASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSL 124
           I SL  +LK LS+S   ++G +  Q       L +L++   R+  +         S+ SL
Sbjct: 110 IGSLHETLKQLSLSENLLHGNIP-QELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSL 168

Query: 125 KYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSN 184
           +Y+ LS+ +L+     I     C L  L+ L   +N L G++P  ++N T+L+ +D+ SN
Sbjct: 169 QYIDLSNNSLT---GEIPLNYHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESN 225

Query: 185 QLTGSIASSPLAHLTSIEELHLSDNHF---RIPISLEPLF----NHSRLKIFDAENNELN 237
            L+G + S  ++ +  ++ L+LS NHF       +LEP F    N S L+  +   N L 
Sbjct: 226 MLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLG 285

Query: 238 AEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLL 297
            EIT S    + N    +L  +  +G   + P  + +  +L  ++LS   ++G  P  L 
Sbjct: 286 GEITSSVRHLSVNLVQIHLDQNRIHG---SIPPEISNLLNLTLLNLSSNLLSGPIPRELC 342

Query: 298 ENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI 357
           +  +KL+ ++L N+ L G   + +    RL  LDVS NN  G IP   G+ L  L    +
Sbjct: 343 KL-SKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGN-LSQLRRLLL 400

Query: 358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD-FLALSNNSLEGKV- 415
             N L G++P S G    L+ILDLS+N LTG IP  +      L  +L LS+N L G + 
Sbjct: 401 YGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIP 460

Query: 416 -----LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 470
                + ++  +DLS N+L G IPPQ+G+   ++ LNLS N  +  +PS+   L +++ L
Sbjct: 461 LELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKEL 520

Query: 471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCG 528
           D+S+N+L G IP    +  TL+  + +FN LSG + + K  F+     S+ G++ LCG
Sbjct: 521 DVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSD-KGSFSKLTIESFLGDSLLCG 577

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  173 bits (438), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 175/607 (28%), Positives = 276/607 (45%), Gaps = 91/607 (14%)

Query: 12  QSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPS 71
           + +  L +L TL L  NN TG      +E      LE+  L+ + L  SL ++I S   S
Sbjct: 282 KRLTELANLQTLDLSSNNLTGV---IHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTS 338

Query: 72  LKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNT--SFLQII------------ 117
           LK L +S  +++G +  +   + +SL+ L++    +      S  Q++            
Sbjct: 339 LKQLFLSETQLSGEIPAE-ISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSL 397

Query: 118 -GESTPSLKYLS-LSDFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMT 174
            G  + S+  L+ L +FTL  N+    + + +  L  L+ +Y   N   G +P  + N T
Sbjct: 398 EGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCT 457

Query: 175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF--RIPISLEPLFNHSRLKIFDAE 232
            L+ +D   N+L+G I SS +  L  +  LHL +N     IP SL    N  ++ + D  
Sbjct: 458 RLQEIDWYGNRLSGEIPSS-IGRLKDLTRLHLRENELVGNIPASLG---NCHQMTVIDLA 513

Query: 233 NNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEF 292
           +N+L+  I  S+   T    L+  ++ +    G   P  L +  +L  ++ S  K NG  
Sbjct: 514 DNQLSGSIPSSFGFLTA---LELFMIYNNSLQG-NLPDSLINLKNLTRINFSSNKFNGSI 569

Query: 293 PNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNL 352
               L  ++   +  +  +   G   L +     L +L +  N F G IP   G I   L
Sbjct: 570 SP--LCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKI-SEL 626

Query: 353 ISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLA---------------VG 397
              +IS N+L G IP   G    L  +DL+NN L+G IP  L                VG
Sbjct: 627 SLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVG 686

Query: 398 CVYLDFLALSN--------NSLEGKV------------------------------LSLL 419
            +  +  +L+N        NSL G +                              LS L
Sbjct: 687 SLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKL 746

Query: 420 SGLDLSCNKLIGHIPPQIGNLTRIQT-LNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
             L LS N L G IP +IG L  +Q+ L+LS+NN TG IPST S L  +ESLDLS+N+L 
Sbjct: 747 FELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLV 806

Query: 479 GKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPA 538
           G++P Q+ ++K+L   +L++NNL G++   K QF+ +   ++ GN  LCG PL  C    
Sbjct: 807 GEVPGQIGDMKSLGYLNLSYNNLEGKL---KKQFSRWQADAFVGNAGLCGSPLSHCNRAG 863

Query: 539 TTPEASI 545
           +  + S+
Sbjct: 864 SKNQRSL 870

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 173/570 (30%), Positives = 262/570 (45%), Gaps = 75/570 (13%)

Query: 12  QSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPS 71
           + +G+L SL  L +  NN TG    +  +L     +     +G +    ++ S  S   S
Sbjct: 157 RQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIR----AGRNGFSGVIPSEISGCES 212

Query: 72  LKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS-LS 130
           LK L ++   + G +  Q     ++L  L + + R++         GE  PS+  +S L 
Sbjct: 213 LKVLGLAENLLEGSLPKQ-LEKLQNLTDLILWQNRLS---------GEIPPSVGNISRLE 262

Query: 131 DFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGS 189
              L  N  +  + R +  L  ++ LY   N L G +P  + N+     +D S NQLTG 
Sbjct: 263 VLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGF 322

Query: 190 IASS-----------------------PLAHLTSIEELHLSDNHFR--IPISLEPLFNHS 224
           I                           L  LT +E+L LS N     IP  L+ L    
Sbjct: 323 IPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLV 382

Query: 225 RLKIFDAENNELNAEI--------------TESYSLTTP------NFQLQYLLLSSGYGD 264
            L++FD   N+L  +I                + SL+ P       FQ   LL       
Sbjct: 383 DLQLFD---NQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKL 439

Query: 265 GATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH 324
               P+ L     L  + L   ++ G  P  L  N   L  L L  + L+G     +   
Sbjct: 440 SGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELF-NLQNLTALELHQNWLSGNISADLGKL 498

Query: 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
           K L +L ++NNNF G IP EIG+ L  ++ FNIS N L G IP   G+   ++ LDLS N
Sbjct: 499 KNLERLRLANNNFTGEIPPEIGN-LTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGN 557

Query: 385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKV------LSLLSGLDLSCNKLIGHIPPQIG 438
           + +G I + L    VYL+ L LS+N L G++      L+ L  L L  N L  +IP ++G
Sbjct: 558 KFSGYIAQELG-QLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELG 616

Query: 439 NLTRIQ-TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA 497
            LT +Q +LN+SHNNL+G IP +  NL+ +E L L+ NKL+G+IP  +  L +L + +++
Sbjct: 617 KLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNIS 676

Query: 498 FNNLSGEIPEWKAQFATFNESSYEGNTFLC 527
            NNL G +P+  A F   + S++ GN  LC
Sbjct: 677 NNNLVGTVPD-TAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  164 bits (415), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 173/600 (28%), Positives = 246/600 (41%), Gaps = 113/600 (18%)

Query: 20  LNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSY 79
           L TL L +NN TG  +  T  L +  ++ Y   SG+S+   +  S+ +   +LK+L++SY
Sbjct: 179 LQTLDLSYNNITGPISGLTIPLSSCVSMTYLDFSGNSISGYISDSLINC-TNLKSLNLSY 237

Query: 80  CEVNGVVRGQGFPHFKSLEHLNMERAR----IAPNTS---------------FLQIIGES 120
              +G +  + F   K L+ L++   R    I P                  F  +I ES
Sbjct: 238 NNFDGQIP-KSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPES 296

Query: 121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILD 180
             S  +L   D + +  S    +  L S   LQ L   NN + G  P  ++   SLRI D
Sbjct: 297 LSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIAD 356

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEI 240
            SSN+ +G I         S+EEL L DN                         E+   I
Sbjct: 357 FSSNRFSGVIPPDLCPGAASLEELRLPDNLV---------------------TGEIPPAI 395

Query: 241 TESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL--LE 298
           ++   L T +  L YL          T P  + +   LE     +  + GE P  +  L+
Sbjct: 396 SQCSELRTIDLSLNYL--------NGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQ 447

Query: 299 NNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS 358
           N   LK L L N+ L G       +   +  +  ++N   G +P + G IL  L    + 
Sbjct: 448 N---LKDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFG-ILSRLAVLQLG 503

Query: 359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV--GCVYLDFLALSNNSL----- 411
            N   G IP   G    L  LDL+ N LTGEIP  L    G   L  L LS N++     
Sbjct: 504 NNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGL-LSGNTMAFVRN 562

Query: 412 -------------------------------------EGKVLSLLSG------LDLSCNK 428
                                                 G +LSL +       LDLS N+
Sbjct: 563 VGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQ 622

Query: 429 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 488
           L G IP +IG +  +Q L LSHN L+G IP T   LK++   D S N+L G+IP     L
Sbjct: 623 LRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNL 682

Query: 489 KTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRS-----PATTPEA 543
             L    L+ N L+G IP+ + Q +T   + Y  N  LCG+PLP C++     PA T E 
Sbjct: 683 SFLVQIDLSNNELTGPIPQ-RGQLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEG 741

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  163 bits (413), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 206/437 (47%), Gaps = 52/437 (11%)

Query: 143 DRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASS-PLAHLTSI 201
           D GL  L +L+ L   +N L G +P  ++N T L++LD+S NQ+TG I       +LT I
Sbjct: 379 DLGL--LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFI 436

Query: 202 EELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYL-LLSS 260
               +  NHF   I  + +FN S L+     +N L   +           +LQ L +L  
Sbjct: 437 S---IGRNHFTGEIP-DDIFNCSNLETLSVADNNLTGTLKPLIG------KLQKLRILQV 486

Query: 261 GYGD-GATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRL 319
            Y       P+ + +  DL  + L      G  P  +  N T L+ L + ++ L GP   
Sbjct: 487 SYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREM-SNLTLLQGLRMYSNDLEGPIPE 545

Query: 320 PIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKIL 379
            +   K L  LD+SNN F G IP  +   L +L   ++  N  +GSIP+S  +++LL   
Sbjct: 546 EMFDMKLLSVLDLSNNKFSGQIP-ALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTF 604

Query: 380 DLSNNQLTGEIPEHLAVGC----VYLDF---------------------LALSNNSLEGK 414
           D+S+N LTG IP  L        +YL+F                     + LSNN   G 
Sbjct: 605 DISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGS 664

Query: 415 VLSLLSG------LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHI 467
           +   L        LD S N L GHIP ++   +  I +LNLS N+ +G IP +F N+ H+
Sbjct: 665 IPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHL 724

Query: 468 ESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC 527
            SLDLS N L G+IP  L  L TL+   LA NNL G +PE    F   N S   GNT LC
Sbjct: 725 VSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLC 783

Query: 528 GLPLPICRSPATTPEAS 544
           G   P+   P T  + S
Sbjct: 784 GSKKPL--KPCTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  158 bits (399), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 177/573 (30%), Positives = 272/573 (47%), Gaps = 83/573 (14%)

Query: 13  SMGSLPSLNTLYLKHNNFTG------TATTTTQELHNFTNL-------EYSTLSG-SSLH 58
           S+  L +L TL L  N  TG      +  +  + L  F NL       E   LSG   + 
Sbjct: 148 SLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIR 207

Query: 59  ISLLQSIASLFPS-------LKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNT 111
           I   + I+   PS       L  L ++   V+G +        K LE L++    I+   
Sbjct: 208 IGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSS-LGKLKKLETLSIYTTMIS--- 263

Query: 112 SFLQIIGESTPSLKYLS-LSDFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWC 169
                 GE    L   S L D  L  NS S  + R +  L  L++L+   N L G +P  
Sbjct: 264 ------GEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEE 317

Query: 170 VANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR--IPISLEPLFNHSRLK 227
           + N ++L+++D+S N L+GSI SS +  L+ +EE  +SDN F   IP ++    N S L 
Sbjct: 318 IGNCSNLKMIDLSLNLLSGSIPSS-IGRLSFLEEFMISDNKFSGSIPTTIS---NCSSLV 373

Query: 228 IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTK 287
               + N+++  I       T   +L      S   +G + P  L    DL+ +DLS   
Sbjct: 374 QLQLDKNQISGLIPSELGTLT---KLTLFFAWSNQLEG-SIPPGLADCTDLQALDLSRNS 429

Query: 288 MNGEFPN--WLLENNTKLKTLFLVNDSLAG-------------PFRLP-----------I 321
           + G  P+  ++L N TKL    L+++SL+G               RL            I
Sbjct: 430 LTGTIPSGLFMLRNLTKL---LLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGI 486

Query: 322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDL 381
            S K++  LD S+N   G +P EIG     L   ++S N+L+GS+P+   +++ L++LD+
Sbjct: 487 GSLKKINFLDFSSNRLHGKVPDEIGSC-SELQMIDLSNNSLEGSLPNPVSSLSGLQVLDV 545

Query: 382 SNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV---LSLLSGL---DLSCNKLIGHIPP 435
           S NQ +G+IP  L    V L+ L LS N   G +   L + SGL   DL  N+L G IP 
Sbjct: 546 SANQFSGKIPASLGR-LVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPS 604

Query: 436 QIGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF 494
           ++G++  ++  LNLS N LTG IPS  ++L  +  LDLS+N L G +   L  ++ L   
Sbjct: 605 ELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDL-APLANIENLVSL 663

Query: 495 SLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC 527
           ++++N+ SG +P+ K  F   +    EGN  LC
Sbjct: 664 NISYNSFSGYLPDNKL-FRQLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 166/531 (31%), Positives = 251/531 (47%), Gaps = 50/531 (9%)

Query: 12  QSMGSLPS-------LNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQS 64
           Q  GSLPS       L++L L +N F+G       E+ +   L++ +L+ + L  S+ + 
Sbjct: 316 QLSGSLPSWMGKWKVLDSLLLANNRFSGE---IPHEIEDCPMLKHLSLASNLLSGSIPRE 372

Query: 65  IASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSL 124
           +     SL+ + +S   ++G +  + F    SL  L +            QI G     L
Sbjct: 373 LCG-SGSLEAIDLSGNLLSGTIE-EVFDGCSSLGELLLTNN---------QINGSIPEDL 421

Query: 125 KYLSLSDFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSS 183
             L L    L +N+ +  + + L    +L E     N L G LP  + N  SL+ L +S 
Sbjct: 422 WKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSD 481

Query: 184 NQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITES 243
           NQLTG I    +  LTS+  L+L+ N F+  I +E L + + L   D  +N L  +I + 
Sbjct: 482 NQLTGEIPRE-IGKLTSLSVLNLNANMFQGKIPVE-LGDCTSLTTLDLGSNNLQGQIPDK 539

Query: 244 YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKL 303
            +      QLQ L+LS     G+   K   + H +E  DLS  + +G F           
Sbjct: 540 ITALA---QLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFD---------- 586

Query: 304 KTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALD 363
               L  + L+GP    +     L ++ +SNN+  G IP  +   L NL   ++S NAL 
Sbjct: 587 ----LSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSR-LTNLTILDLSGNALT 641

Query: 364 GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV------LS 417
           GSIP   GN   L+ L+L+NNQL G IPE   +    L  L L+ N L+G V      L 
Sbjct: 642 GSIPKEMGNSLKLQGLNLANNQLNGHIPESFGL-LGSLVKLNLTKNKLDGPVPASLGNLK 700

Query: 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
            L+ +DLS N L G +  ++  + ++  L +  N  TG IPS   NL  +E LD+S N L
Sbjct: 701 ELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLL 760

Query: 478 NGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCG 528
           +G+IP ++  L  LE  +LA NNL GE+P         +++   GN  LCG
Sbjct: 761 SGEIPTKICGLPNLEFLNLAKNNLRGEVPS-DGVCQDPSKALLSGNKELCG 810

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 162/556 (29%), Positives = 261/556 (46%), Gaps = 108/556 (19%)

Query: 12  QSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPS 71
           +++  L  L  LYL +N   GT + +   + N TNL++  L  ++L   L + I++L   
Sbjct: 378 EALFELVELTDLYLHNNTLEGTLSPS---ISNLTNLQWLVLYHNNLEGKLPKEISALR-K 433

Query: 72  LKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSD 131
           L+ L +     +G +  Q   +  SL+ ++M               GE  PS+  L    
Sbjct: 434 LEVLFLYENRFSGEIP-QEIGNCTSLKMIDMFGNHFE---------GEIPPSIGRLKE-- 481

Query: 132 FTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIA 191
                           +L+HL++     N+L G LP  + N   L ILD++ NQL+GSI 
Sbjct: 482 ---------------LNLLHLRQ-----NELVGGLPASLGNCHQLNILDLADNQLSGSIP 521

Query: 192 SSPLAHLTSIEELHLSDNHFR--IPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTP 249
           SS    L  +E+L L +N  +  +P SL  L N +R+ +    +N LN  I   + L   
Sbjct: 522 SS-FGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINL---SHNRLNGTI---HPLCGS 574

Query: 250 NFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLV 309
           +  L + + ++G+ D    P  L +  +L+ + L   ++ G+ P W L    +L  L + 
Sbjct: 575 SSYLSFDVTNNGFED--EIPLELGNSQNLDRLRLGKNQLTGKIP-WTLGKIRELSLLDMS 631

Query: 310 NDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI----------------LP--- 350
           +++L G   L +   K+L  +D++NN   G IP  +G +                LP   
Sbjct: 632 SNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTEL 691

Query: 351 ----NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCV-YLDFLA 405
                L+  ++  N+L+GSIP   GN+  L +L+L  NQ +G +P+  A+G +  L  L 
Sbjct: 692 FNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQ--AMGKLSKLYELR 749

Query: 406 LSNNSLEGKV-------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP 458
           LS NSL G++         L S LDLS N   G IP  IG L++++TL+LSHN LTG +P
Sbjct: 750 LSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP 809

Query: 459 STFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNES 518
            +  ++K +  L++S+N L GK+                           K QF+ +   
Sbjct: 810 GSVGDMKSLGYLNVSFNNLGGKL---------------------------KKQFSRWPAD 842

Query: 519 SYEGNTFLCGLPLPIC 534
           S+ GNT LCG PL  C
Sbjct: 843 SFLGNTGLCGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score =  156 bits (395), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 144/417 (34%), Positives = 198/417 (47%), Gaps = 42/417 (10%)

Query: 142 LDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSI 201
           + + L  L  +  L    N L G +P  ++N +SL + DVS+N LTG I    L  L  +
Sbjct: 276 IPKELGKLQKITSLLLWGNSLSGVIPPEISNCSSLVVFDVSANDLTGDIPGD-LGKLVWL 334

Query: 202 EELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSG 261
           E+L LSDN F   I  E L N S L     + N+L+  I         + Q  +L  +S 
Sbjct: 335 EQLQLSDNMFTGQIPWE-LSNCSSLIALQLDKNKLSGSIPSQIG-NLKSLQSFFLWENSI 392

Query: 262 YGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPI 321
            G   T P    +  DL  +DLS  K+ G  P  L       K L L N    G  +  +
Sbjct: 393 SG---TIPSSFGNCTDLVALDLSRNKLTGRIPEELFSLKRLSKLLLLGNSLSGGLPK-SV 448

Query: 322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDL 381
              + L +L V  N   G IP EIG+ L NL+  ++ MN   G +P    NI +L++LD+
Sbjct: 449 AKCQSLVRLRVGENQLSGQIPKEIGE-LQNLVFLDLYMNHFSGGLPYEISNITVLELLDV 507

Query: 382 SNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV-------------------------- 415
            NN +TG+IP  L    V L+ L LS NS  G +                          
Sbjct: 508 HNNYITGDIPAQLG-NLVNLEQLDLSRNSFTGNIPLSFGNLSYLNKLILNNNLLTGQIPK 566

Query: 416 ----LSLLSGLDLSCNKLIGHIPPQIGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKHIESL 470
               L  L+ LDLS N L G IP ++G +T +   L+LS+N  TG IP TFS+L  ++SL
Sbjct: 567 SIKNLQKLTLLDLSYNSLSGEIPQELGQVTSLTINLDLSYNTFTGNIPETFSDLTQLQSL 626

Query: 471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC 527
           DLS N L+G I   L  L +L   +++ NN SG IP     F T + +SY  NT LC
Sbjct: 627 DLSSNSLHGDI-KVLGSLTSLASLNISCNNFSGPIPS-TPFFKTISTTSYLQNTNLC 681

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  155 bits (391), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 172/621 (27%), Positives = 272/621 (43%), Gaps = 110/621 (17%)

Query: 14  MGSLPSLNTLYLKHNNFTGTAT------TTTQELHNFTNLEYSTLSGS------------ 55
           +G L +L+TL+L  N   G+        T   E+  + NL    +  S            
Sbjct: 162 LGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYL 221

Query: 56  ---SLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTS 112
              SL  S+   I +L P+L+ L +    + G +    F + K++  LNM          
Sbjct: 222 FINSLSGSIPSEIGNL-PNLRELCLDRNNLTGKIPSS-FGNLKNVTLLNMFEN------- 272

Query: 113 FLQIIGESTPSLKYLSLSDFTLSTNSSRI---LDRGLCSLMHLQELYKVNNDLRGSLPWC 169
             Q+ GE  P +  ++  D TLS +++++   +   L ++  L  L+   N L GS+P  
Sbjct: 273 --QLSGEIPPEIGNMTALD-TLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPE 329

Query: 170 VANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF 229
           +  M S+  L++S N+LTG +  S    LT++E L L DN    PI    + N + L + 
Sbjct: 330 LGEMESMIDLEISENKLTGPVPDS-FGKLTALEWLFLRDNQLSGPIP-PGIANSTELTVL 387

Query: 230 DAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMN 289
             + N               NF        +G+      P  +     LE + L      
Sbjct: 388 QLDTN---------------NF--------TGF-----LPDTICRGGKLENLTLDDNHFE 419

Query: 290 GEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDIL 349
           G  P  L +  + ++  F  N S +G        +  L  +D+SNNNF G +     +  
Sbjct: 420 GPVPKSLRDCKSLIRVRFKGN-SFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANW-EQS 477

Query: 350 PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN 409
             L++F +S N++ G+IP    N+  L  LDLS+N++TGE+PE ++     +  L L+ N
Sbjct: 478 QKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESIS-NINRISKLQLNGN 536

Query: 410 SLEGKV------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 463
            L GK+      L+ L  LDLS N+    IPP + NL R+  +NLS N+L   IP   + 
Sbjct: 537 RLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTK 596

Query: 464 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW--------------- 508
           L  ++ LDLSYN+L+G+I  Q   L+ LE   L+ NNLSG+IP                 
Sbjct: 597 LSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHN 656

Query: 509 --------KAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNERDDNLIDMDNFF 560
                    A F      ++EGN  LCG           +  +S  + +D NLI      
Sbjct: 657 NLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLI------ 710

Query: 561 ITFTTSYVIV-IFGIVVVLYV 580
                 Y++V I G +++L V
Sbjct: 711 -----IYILVPIIGAIIILSV 726

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	614
224120284	929	predicted protein [Populus trichocarpa]	0.965	0.638	0.397	1e-112
224112249	806	predicted protein [Populus trichocarpa]	0.910	0.693	0.413	1e-103
255581263	912	serine-threonine protein kinase, plant-t	0.669	0.450	0.487	2e-97
224120450	935	predicted protein [Populus trichocarpa]	0.910	0.597	0.367	8e-94
224124502	452	predicted protein [Populus trichocarpa]	0.708	0.962	0.421	3e-86
224144186	973	predicted protein [Populus trichocarpa]	0.962	0.607	0.351	2e-85
224142717	876	predicted protein [Populus trichocarpa]	0.915	0.641	0.354	6e-85
224112245	876	predicted protein [Populus trichocarpa]	0.877	0.615	0.393	2e-84
224106948	658	predicted protein [Populus trichocarpa]	0.942	0.879	0.354	2e-83
297743503	947	unnamed protein product [Vitis vinifera]	0.825	0.535	0.376	3e-82

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 290/730 (39%), Positives = 377/730 (51%), Gaps = 137/730 (18%)

Query: 5   RDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYS-----TLSGSSLHI 59
           R  + +L S   L SL  L L+ N+  GT     + +  F NL        T +G  + +
Sbjct: 194 RFDNSILSSFKGLSSLKNLGLEKNHLKGTFNM--KGIRGFGNLSRVRLFNITANGRRISL 251

Query: 60  SLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGE 119
            LLQS+A L P+LK L +      G +  Q  P  K+L  L++  + +  + SFLQ IG 
Sbjct: 252 PLLQSLAKL-PNLKTLDLGNNNFEGTILAQALPSLKNLHKLDLSSSTL--DNSFLQTIGR 308

Query: 120 STPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRIL 179
            T +L  L L+   LS   S  +  GLC L HLQ L   NN L G LP C+AN+TSL+ +
Sbjct: 309 IT-TLTSLKLNGCRLS--GSIPIAEGLCELKHLQSLDISNNSLTGVLPKCLANLTSLKQI 365

Query: 180 DVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAE 239
           D+SSN   G I+SSPL  LTSI+EL LSDN+F+IPISL    NHS LK F   NNE+ AE
Sbjct: 366 DLSSNHFGGDISSSPLITLTSIQELRLSDNNFQIPISLRSFSNHSELKFFFGYNNEICAE 425

Query: 240 ITESYSLTTPNFQLQYLLLSS-GYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLE 298
           + E   +  P FQLQ L LS   YG    FPKFL++QH+L  +  S+ +M G  PNWLLE
Sbjct: 426 LEEHNLI--PKFQLQRLHLSGQAYGGALPFPKFLFYQHNLREIYFSNMRMRGGVPNWLLE 483

Query: 299 NNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS 358
           NNT L  LFLVN+SL+GPF+LPIH H  L QLD+S+N+   HIP EIG   P+L   ++S
Sbjct: 484 NNTNLHELFLVNNSLSGPFQLPIHPHVSLSQLDISDNHLDSHIPTEIGAYFPSLTFLSMS 543

Query: 359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE-------------------------H 393
            N  +G IPSSFG ++ L +LDLS N ++G++P                          H
Sbjct: 544 KNHFNGIIPSSFGYMSSLLVLDLSENNISGKLPSCFSSLPLVHVYLSQNKLQGSLEDAFH 603

Query: 394 LAVGCVYLD---------------------FLALSNNSLEGKV------LSLLSGLDLSC 426
            +   + LD                     +L L  N+LEG++      L  LS +DLS 
Sbjct: 604 KSFELITLDLSHNQLTGNISEWIGEFSHMSYLLLGYNNLEGRIPNQLCKLDKLSFIDLSH 663

Query: 427 NKLIGHIPP-------------------------------------QIGNLTRIQTLNLS 449
           NK  GHI P                                      I  L  +  ++LS
Sbjct: 664 NKFSGHILPCLRFRSSIWYSNLRIYPDRYLIREPLEITTKSVSYSYPISILNIMSGMDLS 723

Query: 450 HNNLTGL------------------------IPSTFSNLKHIESLDLSYNKLNGKIPHQL 485
            NNLTG                         IP TFSNL  +ESLDLS N L G IP  L
Sbjct: 724 CNNLTGEIPPEIGNLNHIHVLNLSNNFLIGPIPQTFSNLSEVESLDLSNNSLTGAIPPGL 783

Query: 486 VELKTLEVFSLAFNNLSGEI-PEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEAS 544
           V+L  LEVFS+A NNLSG   P    QF+TFNESSYEGN  LCG PL    +     EAS
Sbjct: 784 VQLHYLEVFSVAHNNLSGRTPPNMIPQFSTFNESSYEGNPLLCGPPLSRHCTTQEEEEAS 843

Query: 545 IGNER---DD----NLIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWIT 597
              +R   DD      +D D F+++F  +Y++++     +LY+NP WR  WFYF++  I 
Sbjct: 844 SLPKRTSTDDIEESGFMDTDVFYVSFVVTYIMMLLVTAAILYINPNWRRAWFYFIKQSIN 903

Query: 598 SCYYFVVDNL 607
           +CYYF VDNL
Sbjct: 904 NCYYFFVDNL 913

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112249|ref|XP_002332816.1| predicted protein [Populus trichocarpa] gi|222833210|gb|EEE71687.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 276/667 (41%), Positives = 370/667 (55%), Gaps = 108/667 (16%)

Query: 9   KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASL 68
           +LLQS+G+ P+L TLYL   +F G       +L N + L+   L   SL    LQS  +L
Sbjct: 156 QLLQSLGAFPNLTTLYLGFYDFRGR--ILGDKLQNLSFLKNLYLDSCSLDEHSLQSFRAL 213

Query: 69  FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
            PSLKNLS+   E+N  V   GF   K+LE+L++  + +  N S  Q I   T S K L 
Sbjct: 214 -PSLKNLSLQ--ELNSTVPSGGFLDLKNLEYLDLSYSTL--NNSIFQTIRTMT-SFKILK 267

Query: 129 LSDFTLSTN------------------SSRILD----RGLCSLMHLQELYKVNNDLRGSL 166
           L D +L+                    SS  LD    + + ++  L+ L   +  L G +
Sbjct: 268 LEDCSLNGQIPTTQGFLNPKNLEYLDLSSNTLDNNILQSIETMTSLKTLILGSCKLDGQI 327

Query: 167 PWC--VANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHS 224
           P    + ++  L+ LD+S N L+G + S  L +LTS+++L+LS NHF+IP+SL PL+N S
Sbjct: 328 PTAQGLCDLNHLQELDMSDNDLSGVLPSC-LTNLTSLQQLYLSSNHFKIPMSLSPLYNLS 386

Query: 225 RLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLS 284
           ++K F +  NE+ AE  E     +P FQL+ L L     D    PKF YHQ  L+++DL+
Sbjct: 387 KIKSFYSSGNEIFAE--EDDHNLSPKFQLESLYLRGRGQDAGALPKFFYHQFSLQFLDLA 444

Query: 285 HTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLE 344
           + ++ GEF NWL+ENNT L+ L+L N SL+GPF LP +SH  L  L +S N+FQG IPL+
Sbjct: 445 NIQIKGEFSNWLIENNTYLQRLYLENCSLSGPFLLPKNSHVNLSFLRISMNHFQGQIPLK 504

Query: 345 IGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEI-------------- 390
           IGD LP L    +S N  +GSIP S      L  LDLSNN LTG I              
Sbjct: 505 IGDRLPGLEVLKMSDNGFNGSIPYS------LFELDLSNNLLTGRILSNNKISSKDRSQW 558

Query: 391 -----PEHLAVGCVY----------------LDFLALSNNSLEGKV---------LSL-- 418
                PE LA+   +                L FL LS N+LEG++         L+L  
Sbjct: 559 HFMTHPEILALDLSHNNLTGTIQEWIDRLSNLRFLLLSYNNLEGEIPIQLSRLDQLTLID 618

Query: 419 -----LSG--------LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN---LTGLIPSTFS 462
                LSG        +D SCN   G IPP+IGNL+ I+ LNLSHN    +   IP TF 
Sbjct: 619 LSHNHLSGDNIWYFIRIDFSCNNFTGKIPPKIGNLSMIKALNLSHNICYLVCITIPPTFW 678

Query: 463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEG 522
           NLK IESLDLSYNKL+G+IP +L EL +LEVFS+A NN SG+ P   AQFATF  S Y+ 
Sbjct: 679 NLKEIESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNFSGKTPARVAQFATFEASCYKD 738

Query: 523 NTFLCGLPLP-ICRS---PATTPEASIGNERDDNLIDMDNFFITFTTSYVIVIFGIVVVL 578
           N FLCG PLP IC +   P+ TP  S  NE +   IDM+ F++TF  +Y++V+  I   L
Sbjct: 739 NPFLCGEPLPKICGAAMPPSQTP-TSTNNEDNGGFIDMEVFYVTFWVAYIMVLLVIGAFL 797

Query: 579 YVNPYWR 585
           ++NPYWR
Sbjct: 798 HINPYWR 804

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 208/427 (48%), Positives = 284/427 (66%), Gaps = 16/427 (3%)

Query: 86  VRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRG 145
           ++ Q  P+F++LE L +++  +    SFLQ +G  T SLK LSLS   L+     +  +G
Sbjct: 168 IQAQDLPNFENLEELYLDKIELE--NSFLQTVGVMT-SLKVLSLSGCGLTGALPNV--QG 222

Query: 146 LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELH 205
           LC L+HL+ L   +N+  G LPWC++N+TSL++LD+SSNQ  G I++SPL  L S+ +L 
Sbjct: 223 LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 206 LSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDG 265
           +S+NHF++P SL P FNHS LK    +NN +  E  E +S   P FQL  ++ S GYG  
Sbjct: 283 VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLE-AELHS--APRFQLISIIFS-GYGIC 338

Query: 266 ATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHK 325
            TFP FLYHQ++L++VDLSH  + GEFPNWLL NNT+L+ L LVN+SL+G  +LP+H H 
Sbjct: 339 GTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHV 398

Query: 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQ 385
            L  LD+SNN+   HIPLEIG  LP L   N+S N  DGSIPSSFGN+N L+ILDLSNNQ
Sbjct: 399 NLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQ 458

Query: 386 LTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL------LSGLDLSCNKLIGHIPPQIGN 439
           L+G IPEHLA GC  L+ L LSNNSL+G++ S       L  L+L  N   G IP  +  
Sbjct: 459 LSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK 518

Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN 499
            + +  ++LS N+L+G+IP    NL ++++L LS N+L G IP +  +L  LEV  LA N
Sbjct: 519 -SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANN 577

Query: 500 NLSGEIP 506
           ++SG +P
Sbjct: 578 SVSGILP 584

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120450|ref|XP_002331051.1| predicted protein [Populus trichocarpa] gi|222872981|gb|EEF10112.1| predicted protein [Populus trichocarpa]

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 267/727 (36%), Positives = 363/727 (49%), Gaps = 168/727 (23%)

Query: 7   GSKLLQSMGSLPSLNTLYLKHNNFTG-TATTTTQELHNFT--NLEYSTLSGSSLHISLLQ 63
           GS  +  + +L +L T+ L+ N       +  T+   N +  +L  ST +G +L  +LLQ
Sbjct: 240 GSFNVTELDALINLETVDLRGNEIDKFVLSKDTRGFGNVSLISLSNSTSNGRALPFTLLQ 299

Query: 64  SIASLFPSLKNLSMSYCEVNG---VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGES 120
           S+   FP+L+ L++    + G       +     K+LE L++  + +  + SFLQ +G+ 
Sbjct: 300 SLTK-FPNLRTLNLDENNLEGSFGTTLDKDLASLKNLEKLDLSFSTV--DNSFLQTVGKI 356

Query: 121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILD 180
           T +LK L L    L  N S    +GLC L HLQ L    NDL G+LP C           
Sbjct: 357 T-TLKSLRLRGCRL--NGSIPKAQGLCQLKHLQNLDISGNDLSGALPRC----------- 402

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEI 240
                         LA+LTS++ L LS N+F   IS       S L++      EL    
Sbjct: 403 --------------LANLTSLQGLDLSYNNFIGDISF------SLLQVSHPSEEEL---- 438

Query: 241 TESYSLTTPNFQLQYLLLSS-GYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLEN 299
            E ++L  P FQL+ L LS  GYG   +FPKFL HQ+ L+ +D S+ K+ G FP WLLEN
Sbjct: 439 -EEHNLA-PKFQLERLGLSGNGYGGAFSFPKFLLHQYSLQEIDFSNLKLRGGFPIWLLEN 496

Query: 300 NTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI------ 353
           NT L  L LVN+SL+G F+LPIH H+ L +LD+SNNNF+ HIP EIG   P+L       
Sbjct: 497 NTHLNELHLVNNSLSGTFQLPIHPHQNLSELDISNNNFESHIPREIGSYFPSLTFLSMSD 556

Query: 354 ------------------SFNISMNALDGSIPSSFGNINLLKI----------------- 378
                              F++S N + G++PS F + NLL +                 
Sbjct: 557 NHFSGRVPSSFDFLLYLQVFDLSNNNISGTLPSFFNSSNLLHVYLSRNMLQGSLEHAFQK 616

Query: 379 ------LDLSNNQLTGEIPEHLA---------------VGCV--------YLDFLALSNN 409
                 LDLS+N LTG IP+ +                 G +         L F+ LS+N
Sbjct: 617 SFELITLDLSHNHLTGSIPKWIGEFSQLSFLLLGYNNLYGSIPTQLCKLNELSFIDLSHN 676

Query: 410 SLEGKVLSLL-------------------------------------------SGLDLSC 426
           +  G +L  L                                           +G+DLSC
Sbjct: 677 NFSGHILPCLRFKSSIWFILREEYPSEYSLREPLVIATKSVSYPYSPSILYYMTGMDLSC 736

Query: 427 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV 486
           N L G IPP+IGNL  I  LNLS+N+L G IP T SNL  +ESLDLS N LNG+IP QLV
Sbjct: 737 NSLSGAIPPEIGNLNHIHVLNLSNNHLIGPIPQTLSNLSEVESLDLSNNSLNGEIPPQLV 796

Query: 487 ELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIG 546
           +L +L  FS+A NNLSG+ PE  AQF+TF++SSYEGN  LCG PL    +    P    G
Sbjct: 797 QLHSLAYFSVANNNLSGKTPEMVAQFSTFSKSSYEGNPLLCGPPLLNSCTKEVPPPPPPG 856

Query: 547 NERDDN-----LIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYY 601
              D+      +ID   F ++F  +Y++V+ GI  VLY+NP WR  WF F+E  I +CYY
Sbjct: 857 PSTDEKEESSVIIDAQVFCVSFVVTYIMVLLGIAAVLYMNPDWRRAWFNFIEKSINTCYY 916

Query: 602 FVVDNLI 608
           FVVDNL+
Sbjct: 917 FVVDNLL 923

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124502|ref|XP_002330039.1| predicted protein [Populus trichocarpa] gi|222871464|gb|EEF08595.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 199/472 (42%), Positives = 273/472 (57%), Gaps = 37/472 (7%)

Query: 141 ILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTS 200
           I   G C L +L+ L    N+L+G LP C+ N++SLR LD+S NQL G+IA S L+HL  
Sbjct: 5   IYSAGWCELKNLEHLSLSGNNLKGVLPPCLGNLSSLRSLDLSDNQLEGNIALSHLSHLPQ 64

Query: 201 IEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSS 260
           ++ L +S+N+F++PIS     NHS LK F+ +NNEL A    S+    P FQL+    S+
Sbjct: 65  LQYLTVSNNYFQVPISFGSFMNHSNLKFFECDNNELIA--APSFQPLVPKFQLRAFSASN 122

Query: 261 GYGD--GATFPKFLYHQHDLEYVDLSHTKMNGE-FPNWLLENNTKLKTLFLVNDSLAGPF 317
                  A FP FL  QHDL +VDLSH K  GE FP+WL ENN  L  L+L + S  GP 
Sbjct: 123 CTPKPLKAGFPNFLQSQHDLVFVDLSHNKFVGEPFPSWLFENNRLLNRLYLRDISFTGPL 182

Query: 318 RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLK 377
           +LP H    L+ +D+S NN  G +   I  I   L +F ++ N L G IP  FGN++ L+
Sbjct: 183 QLPQHPTPNLQTVDMSGNNIHGQVARTICSIFTRLKNFIMANNTLTGCIPPCFGNMSSLE 242

Query: 378 ILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI 437
            LDLSNN ++ E+ EH     ++  FL LSNN+ +G+                  +P  +
Sbjct: 243 YLDLSNNHMSCELLEHNLPTSLW--FLKLSNNNFKGR------------------LPLSV 282

Query: 438 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA 497
            N+T ++ L L  N   G           IESLDLS+N LNG+IP QL+EL  L VF+++
Sbjct: 283 LNMTDLRYLFLDGNKFAG----------QIESLDLSHNNLNGRIPAQLIELTFLAVFNVS 332

Query: 498 FNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNER--DDNLID 555
           +NNLSG  PE K QFATF+ESSY+GN  LCG PL        +P A + N+   D   ID
Sbjct: 333 YNNLSGRTPEMKNQFATFDESSYKGNPLLCGPPLQNSCDKTESPSARVPNDSNGDGGFID 392

Query: 556 MDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNL 607
           M +F+ +F   Y+I++  +  VL +NP+WR RWFYF+E  I +C  F+  N 
Sbjct: 393 MYSFYASFGVCYIIMVLTVAAVLRINPHWRRRWFYFIEECIDTCCCFLAINF 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 232/660 (35%), Positives = 336/660 (50%), Gaps = 69/660 (10%)

Query: 10  LLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLF 69
           + Q++ ++ SL TL LK     G   ++TQ   N  NLEY  LS ++L  ++LQSI ++ 
Sbjct: 312 IFQAIETMTSLKTLKLKGCGLNG-QISSTQGFLNLKNLEYLDLSDNTLDNNILQSIRAM- 369

Query: 70  PSLKNLSMSYCEVNGVV-RGQGFPHFKSLEHLNMERARIA-------PNTSFLQIIGEST 121
            SLK L +  C +NG +   QG      L+ L M    ++        N + LQ +  S+
Sbjct: 370 TSLKTLGLQSCRLNGRIPTTQGLCDLNHLQELYMSDNDLSGFLPLCLANLTSLQQLSLSS 429

Query: 122 PSLKY-LSLSDF-------TLSTNSSRIL----DRGLCSLMHLQELY-KVNNDLRGSLPW 168
             LK  +SLS F           + + I     DR + S   L+ LY        G+ P 
Sbjct: 430 NHLKIPMSLSPFHNLSKLKYFDGSGNEIFAEEDDRNMSSKFQLEYLYLSSRGQGAGAFPR 489

Query: 169 CVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKI 228
            + +  SLR LD+++ Q+ G   S  + + T ++ELHL +     P  L P  +H  L  
Sbjct: 490 FLYHQFSLRYLDLTNIQIKGEFPSWLIENNTYLQELHLENCSLSGPFLL-PKNSHVNLSF 548

Query: 229 FDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKM 288
                N    +I        P  ++ ++   S  G   + P  L +   L+++DLS+  +
Sbjct: 549 LSISMNHFRGQIPSEIGAHLPGLEVLFM---SDNGFNGSIPFSLGNISSLQWLDLSNNIL 605

Query: 289 NGEFPNWL-----------------------LENNTKLKTLFLVNDSLAGPFRLPIHSHK 325
            G+ P W+                          ++ L+ ++L  + L GP  +  +   
Sbjct: 606 QGQIPGWIGNMSSLEFLDLSGNNFSGRFPPRFSTSSNLRYVYLSRNKLQGPITMTFYDLA 665

Query: 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQ 385
            +  LD+S+NN  G IP E  D L NL    +S N L+G IP     ++ L ++DLS+N 
Sbjct: 666 EIFALDLSHNNLTGTIP-EWIDRLSNLRFLLLSYNNLEGEIPIQLSRLDRLTLIDLSHNH 724

Query: 386 LTGEIPEHLAVGCVY------LDFLALSNNSLE-----------GKVLSLLSGLDLSCNK 428
           L+G I   +     +       D L+ S  S E           G ++   +G+D SCN 
Sbjct: 725 LSGNILYWMISTHSFPQLYNSRDSLSSSQQSFEFTTKNVSLSYRGIIIWYFTGIDFSCNN 784

Query: 429 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 488
             G IPP+IGNL+ I+ LNLSHNNLTG IP TF NLK IESLDLSYNKL+G+IP +L EL
Sbjct: 785 FTGEIPPEIGNLSMIKVLNLSHNNLTGPIPPTFWNLKEIESLDLSYNKLDGEIPPRLTEL 844

Query: 489 KTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL-PICRSPATTPEASIGN 547
            +LEVF +A NNLSG+ P   AQFATF+ES Y+ N FLCG PL  IC         S  N
Sbjct: 845 FSLEVFIVAHNNLSGKTPARVAQFATFDESCYKDNPFLCGEPLSKICGVAMPPSPTSTNN 904

Query: 548 ERDDNLIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNL 607
           E +   +DM  F++TF  +Y++V+  I  VLY+NPYWR  WFYF+E+ I +CYYF+VDN 
Sbjct: 905 EDNGGFMDMKVFYVTFWVAYIMVLLVIGAVLYINPYWRRGWFYFIEVSINNCYYFLVDNF 964

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142717|ref|XP_002324701.1| predicted protein [Populus trichocarpa] gi|222866135|gb|EEF03266.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 245/691 (35%), Positives = 342/691 (49%), Gaps = 129/691 (18%)

Query: 8   SKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIAS 67
           S+LLQS+G+ P+L TL+L HN+F G       EL N ++L+   L   SL    LQ++ +
Sbjct: 215 SQLLQSLGAFPNLMTLFLHHNDFRGRKLG--DELQNLSSLKSLYLDQCSLDEHSLQNLGA 272

Query: 68  LFPSLKNLSMS----------YCEVNGVVRGQ-------GF-----PHFKSLEHLNMERA 105
           L P LKNLS S           C++N +           GF      +  SL+HL++   
Sbjct: 273 L-PFLKNLSFSALSSTIPSGGLCDLNNLQELHMYDNNLSGFLPPCLANLTSLQHLDLSSN 331

Query: 106 RIAPNTSFLQIIGESTPSLKYLSLS---------DFTLS-------------TNSSRILD 143
            +    S   +   S   LKY   S         D  LS                +R   
Sbjct: 332 HLKIPVSLSPLYNLS--KLKYFDGSGNEIFTEEDDHNLSPKFQIESLYLNSRGQGARAFP 389

Query: 144 RGLCSLMHLQELYKVNNDLRGSLP-WCVANMTSLR------------------------I 178
           + L   ++LQ +   N  ++G  P W + N T L+                         
Sbjct: 390 KFLYHQVNLQYMDLTNIHIKGEFPNWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSF 449

Query: 179 LDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR--IPISLEPLFNHSRLKIFDAENNEL 236
           L +S N   G I S   AHL  +E L +SD+ F   IP SL    N S L+ FD  NN L
Sbjct: 450 LSISKNHFQGQIPSEIGAHLPRLEVLLMSDDGFNGSIPFSLG---NISSLQAFDLSNNSL 506

Query: 237 NAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL 296
             +I                            P ++ +   LE++DLS    +G  P   
Sbjct: 507 QGQI----------------------------PGWIGNMSSLEFLDLSGNNFSGRLP-LR 537

Query: 297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN 356
            + ++ L+ L+L  + L GP  +  ++   +  LD+S+NN  G IP  IG  L NL    
Sbjct: 538 FDTSSNLRYLYLSRNKLQGPIAMIFYNSVEIFALDLSHNNLTGTIPEWIGR-LSNLRFLL 596

Query: 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYL------DFLALSNNS 410
           +S N L+G IP     ++ L ++DLS+N L+G I   +     +       D+++ S  S
Sbjct: 597 LSYNNLEGEIPIQLSKLDQLTLIDLSHNHLSGNILSWMISTHPFPRQYYSNDYVSSSQQS 656

Query: 411 LE-----------GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 459
           LE           G ++   +G+D SCN   G IP +IGNL +I+ LNLSHN+LTG IP 
Sbjct: 657 LEFTTKNVSLYYIGSIIQYFTGIDFSCNNFTGEIPFEIGNLIKIKALNLSHNSLTGPIPP 716

Query: 460 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESS 519
           TFSNLK IESLDLSYNKL+G+IP +L EL +LEVFS+A NNLSG+ P   AQFATF+E  
Sbjct: 717 TFSNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGKTPTRVAQFATFDEKC 776

Query: 520 YEGNTFLCGLP-LPICRS--PATTPEASIGNERDDNLIDMDNFFITFTTSYVIVIFGIVV 576
           Y+ N FLCG P L IC +  P +    S  NE +   IDM+ F++TF   Y++V+  I  
Sbjct: 777 YKDNPFLCGEPLLKICGAAMPPSPSPTSTNNEDNGGFIDMEVFYVTFWVEYIMVLIVIGA 836

Query: 577 VLYVNPYWRCRWFYFVEMWITSCYYFVVDNL 607
           VLY+NPYWR  WFYF+E+ I +CYYF+VDNL
Sbjct: 837 VLYINPYWRRAWFYFIEVSINNCYYFLVDNL 867

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 239/608 (39%), Positives = 326/608 (53%), Gaps = 69/608 (11%)

Query: 9   KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASL 68
           +LL S+G+ P+L T+YL  N+F GT      EL N ++LE   L+G  L  + +Q + +L
Sbjct: 141 QLLSSLGAFPNLTTVYLNDNDFKGTIL----ELQNLSSLEKLYLNGCFLDENSIQILGAL 196

Query: 69  FPSLKNLSMSYCEVNGVVRGQGFPH-FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYL 127
             SLK LS+   EV+G+V  QGF +  K+LEHL    + +  + S LQ IG  T SLK L
Sbjct: 197 -SSLKYLSLY--EVSGIVPSQGFLNILKNLEHLYSSNSTL--DNSILQSIGTIT-SLKIL 250

Query: 128 SLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLT 187
            L    L+      L  GLC+L +LQEL   +ND+ G L  C+AN+TSL+ LD       
Sbjct: 251 ELVKCRLNGQ----LPIGLCNLNNLQELDMRDNDISGFLIPCLANLTSLQRLD------- 299

Query: 188 GSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLT 247
                             LS NH +IP+SL PL+N S+LK F   +NE+ AE  E     
Sbjct: 300 ------------------LSSNHLKIPMSLSPLYNLSKLKSFHGLDNEIYAE--EDDHNL 339

Query: 248 TPNFQLQYLLLSSGYGDGA-TFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTL 306
           +P FQLQ L LS+ +G GA  FP+FLYHQ +L+ +DL++ +M G+FPNWL+ENNT LK L
Sbjct: 340 SPKFQLQSLYLSN-HGQGARAFPRFLYHQLNLQSLDLTNIQMKGDFPNWLIENNTYLKNL 398

Query: 307 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSI 366
           +L N SL+GPF LP +SH  L  L +S N  QG IP EIG  LP L   ++S N  +GSI
Sbjct: 399 YLENCSLSGPFLLPKNSHMNLSILSISMNYLQGQIPSEIGAHLPRLTVLSMSHNGFNGSI 458

Query: 367 PSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV------LSLLS 420
           PSS  N++LL+ LDLSNN LTG IP+HL       +FL LSNNSL+G +       S L 
Sbjct: 459 PSSLSNMSLLRDLDLSNNVLTGRIPKHLTTSLCLFNFLILSNNSLQGAIPDSMSNCSSLQ 518

Query: 421 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 480
            LD+S N L   IP  I +++ +  L+LS NN +G +P T S    +  + LS NKL G 
Sbjct: 519 LLDVSNNNLSPRIPGWIWSMSFLDFLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQGL 578

Query: 481 IPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPA-- 538
           I        TL    L+ NNL G IPEW    +         N     +P+ +C+     
Sbjct: 579 ITKAFYNFSTLLTLDLSHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLT 638

Query: 539 ----------------TTPEASIGNERDDNLIDMDNFFITFTTSYVIVIF-GIVVVLYVN 581
                            T  A      D  +++    ++ FTT  V +I+ G +V L+  
Sbjct: 639 LIDLSHNHLSGNILSCMTSLAPFSALTDATIVETSQQYLEFTTKNVSLIYRGSIVKLFSG 698

Query: 582 PYWRCRWF 589
             + C  F
Sbjct: 699 IDFSCNNF 706

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106948|ref|XP_002333588.1| predicted protein [Populus trichocarpa] gi|222837496|gb|EEE75875.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 233/657 (35%), Positives = 337/657 (51%), Gaps = 78/657 (11%)

Query: 19  SLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMS 78
           SL TL L+     G   TT     N  NLE+  LS ++L  ++LQ+I ++ PSLK L + 
Sbjct: 3   SLRTLILQSCRIDGQIPTTQVGFFNLKNLEFLDLSSNTLSNNILQTIRTM-PSLKTLWLQ 61

Query: 79  YCEVNGVV-RGQGFPHFKSLEHLNM-------------------ERARIAPN-------- 110
            C +NG +   QG      L+ L M                   +R  ++ N        
Sbjct: 62  NCSLNGQLPTTQGLCDLNHLQELYMYDNDLIGFLPPCLANMTSLQRLYLSSNHLKIPMSL 121

Query: 111 ---------TSFL----QIIGES-----TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL 152
                     SF     +I  E      TP  +  SLS  +    ++R   + L     L
Sbjct: 122 SPLYNLSKLKSFYGSGNEICAEEDDHNLTPKFQLESLS-LSNGGQNTRAFPKFLYHQFSL 180

Query: 153 QELYKVNNDLRGSLP-WCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
           Q L   N  ++G  P W + N T L+ L + +  L+G       +H+ ++  L +S NHF
Sbjct: 181 QSLDLTNFQIKGEFPNWLIENNTYLKRLSLENCSLSGPFLLPKSSHV-NLSFLSISMNHF 239

Query: 212 RIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKF 271
           +  I  E   +   L++    +N  N  I  S      N  L Y L  S        P +
Sbjct: 240 QGQIPSEIRAHLPGLEVLLMSDNGFNGSIPSSLG----NMSLMYELDLSNNSLQGQIPGW 295

Query: 272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLD 331
           + +   LE++DLS   ++G  P      ++KL+ ++L  + L GP  +  +    +  LD
Sbjct: 296 IGNMSSLEFLDLSRNNLSGPLPP-RFNTSSKLRVVYLSRNKLQGPIAMAFYDSSEIFALD 354

Query: 332 VSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIP 391
           +S+N+  G IP  IG  L NL    +S N L+G IP     ++ L ++DLS+N L+G I 
Sbjct: 355 LSHNDLTGRIPEWIGR-LSNLRFLLLSYNNLEGEIPIRLCRLDQLTVIDLSHNYLSGNIL 413

Query: 392 EHLAVGCVYL------DFLALSNNSLE-----------GKVLSLLSGLDLSCNKLIGHIP 434
             +     +       D +  S  S E           G ++  L G+D SCN   G+IP
Sbjct: 414 SWMISTHPFPFQYNSHDSMFSSQQSFEFTTKNVSLPYKGSIIQYLIGIDFSCNNFTGNIP 473

Query: 435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF 494
           P+IGNL++I+ LNLSHN+LTG IP TF NLK IESLDLSYNKL+G+IP +L EL +LEVF
Sbjct: 474 PEIGNLSKIKALNLSHNSLTGPIPPTFWNLKEIESLDLSYNKLDGEIPPRLTELFSLEVF 533

Query: 495 SLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP-ICRS---PATTPEASIGNERD 550
           S+A NNLSG+ P   AQFATF+ES Y+ N FLCG PLP IC +   P++TP  S  NE  
Sbjct: 534 SVAHNNLSGKTPARVAQFATFDESCYKDNPFLCGEPLPKICAAVMPPSSTP-TSTNNEDH 592

Query: 551 DNLIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNL 607
              ++M+ F++TF  +Y++V+  I  VLY+NPYWR  WF+F+E+ I +CYYF+VDNL
Sbjct: 593 GGFMNMEVFYVTFWVAYIMVLLVIGAVLYINPYWRRAWFHFIEVSINNCYYFLVDNL 649

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743503|emb|CBI36370.3| unnamed protein product [Vitis vinifera]

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 240/637 (37%), Positives = 318/637 (49%), Gaps = 130/637 (20%)

Query: 94  FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQ 153
           F SL +L M        +  + +     P LK LSL+   L+     + ++G C L  LQ
Sbjct: 309 FASLSNLEMLDLSYNSLSGIIPLSIRLMPHLKSLSLAGNHLN---GSLQNQGFCQLNKLQ 365

Query: 154 ELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI 213
           EL    N  +G LP C+ N TSLR+LD+S+N  +G+++S  L +LTS+E + LS N F  
Sbjct: 366 ELDLSYNLFQGILPPCLNNFTSLRLLDLSANLFSGNLSSPLLPNLTSLEYIDLSYNQFEG 425

Query: 214 PISLEPLFNHSRLK--IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKF 271
             S     NHS+L+  I  ++NN+   E TE      P FQL+ L LSS    G   P F
Sbjct: 426 SFSFSSFANHSKLQVVILGSDNNKFEVE-TEYPVGWVPLFQLKVLSLSSCKLTG-DLPGF 483

Query: 272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAG---PFR---------- 318
           L +Q  L  VDLSH  + G FPNWLL NNT+L+ L L N+SL G   P R          
Sbjct: 484 LQYQFRLVRVDLSHNNLTGSFPNWLLANNTRLEFLVLRNNSLMGQLLPLRPTTRISSLDI 543

Query: 319 ---------------------------------LP--IHSHKRLRQLDVSNNNFQGHIP- 342
                                            LP  I     LR LD+S NNF G +P 
Sbjct: 544 SHNQLDGQLQENVAHMIPHIMSLNLSNNGFEGILPSSIAEMISLRVLDLSANNFSGEVPK 603

Query: 343 -------LEI---------GDILPNLISFNISM--------NALDGSIPSSFGN---INL 375
                  LEI         G+I      FN++         N   G++ +       ++ 
Sbjct: 604 QLLATKRLEILKLSNNKFHGEIFSR--DFNLTWVEVLCLGNNQFTGTLSNVISKNSWLSG 661

Query: 376 LKILDLSNNQLTGEIPE--------------HLAVGCVYLDFLALSN------------- 408
           L+ LD+S N L+G +P               ++    +  DFL  SN             
Sbjct: 662 LEFLDVSQNALSGSLPSLKNLLNLKHLHLQGNMFTRLIPRDFLNSSNLLTLDIRENSPIY 721

Query: 409 --------------NSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 454
                         +S +G +L  +SGLDLSCN L G IP ++G L+ I  LNLSHN L 
Sbjct: 722 KETDEVEFVTKNRRDSYKGGILEFMSGLDLSCNNLTGEIPHELGMLSSIHALNLSHNQLN 781

Query: 455 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFAT 514
           G IP +FSNL  IESLDLSYNKL G+IP +LVEL  LEVFS+A+NN+SG +P  KAQF T
Sbjct: 782 GSIPKSFSNLSQIESLDLSYNKLGGEIPLELVELNFLEVFSVAYNNISGRVPNTKAQFGT 841

Query: 515 FNESSYEGNTFLCGLPLP-ICRSPATTPEA---SIGNERDDNLIDMDNFFITFTTSYVIV 570
           F+ES+YEGN FLCG  L   C +   +P A   S  +E     I+   FF +FTTSY+++
Sbjct: 842 FDESNYEGNPFLCGELLKRKCNTSIESPCAPSQSFKSEAKWYDINHVVFFASFTTSYIMI 901

Query: 571 IFGIVVVLYVNPYWRCRWFYFVEMWITSCYYFVVDNL 607
           + G V +LY+NPYWR RWF F+E  I S YYF  D+L
Sbjct: 902 LLGFVTMLYINPYWRHRWFNFIEECIYSYYYFASDSL 938

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	614
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.788	0.484	0.351	1.6e-63
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.747	0.475	0.347	2.5e-58
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.649	0.368	0.371	1.5e-56
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.778	0.489	0.345	6.8e-56
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.737	0.508	0.327	2.8e-53
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.775	0.485	0.316	1.2e-51
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.736	0.497	0.337	1.4e-51
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.794	0.390	0.321	2.5e-48
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.736	0.483	0.334	1.7e-47
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.892	0.482	0.300	7.6e-46

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 181/515 (35%), Positives = 272/515 (52%)

Query:    10 LLQSMGSLPSLNTLYLKHNNFXXXX-XXXXQELHNFTNLEYSTLSGSSLHISLLQSIASL 68
             L++    L +L  L L+ N F           L  F  LE   LS +  +  +   + S 
Sbjct:   113 LVKEFKDLTNLEHLDLRGNRFNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFLNSA 172

Query:    69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
               SLK+LS+    + G    +      ++E L++ R R   +     +   +   LK L 
Sbjct:   173 -TSLKSLSLWGNNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALF--ALRKLKALD 229

Query:   129 LSDFTLSTN--------SSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILD 180
             LSD   S++         ++ L  G C   +++EL   NN L G  P C+ ++T LR+LD
Sbjct:   230 LSDNEFSSSVELQGKFAKTKPLS-GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLD 288

Query:   181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF--DAENNELNA 238
             +SSNQLTG++ S+ LA+L S+E L L  N+F    SL  L N S+LK+   D+++N L  
Sbjct:   289 LSSNQLTGNVPSA-LANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEV 347

Query:   239 EITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLE 298
             E   S+    P FQL  + L S   +    P FL HQ DL +VDLS  +++G FP+WLLE
Sbjct:   348 EFETSWK---PKFQLVVIALRSCNLEKV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLE 402

Query:   299 NNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLE-IGDILPNLISFNI 357
             NNTKL+ L L N+S    F+LP  +H  L  L+VS N F  H+ L+  G ILP+L+  N+
Sbjct:   403 NNTKLEVLLLQNNSFTS-FQLPKSAHNLLF-LNVSVNKFN-HLFLQNFGWILPHLVCVNL 459

Query:   358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVL- 416
             + N   G++PSS  N+  ++ LDLS+N+  G++P     GC  L  L LS+N L G+V  
Sbjct:   460 AYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFP 519

Query:   417 -----SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLD 471
                  + L  + +  N   G+I     +L  +  L++S+N LTG+IPS     + + +L 
Sbjct:   520 EAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQ 579

Query:   472 LSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
             LS N L G+IP  L  +  L++  L+ N LSG+IP
Sbjct:   580 LSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIP 614

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 168/484 (34%), Positives = 250/484 (51%)

Query:    39 QELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLE 98
             + L     LE   L+ +  + S+   +++   SL  L +    ++G    +      +LE
Sbjct:   126 KSLRKLRKLEILDLASNKFNNSIFHFLSAA-TSLTTLFLRSNNMDGSFPAKELRDLTNLE 184

Query:    99 HLNMERARIAPNTSFLQIIGESTPSLKYLSLS--DFTLS--------TNSSRILDRGLCS 148
              L++ R R   +    ++   S   LK L LS  +F+ S        T+    +  G+C 
Sbjct:   185 LLDLSRNRFNGSIPIQEL--SSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICE 242

Query:   149 LMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSD 208
             L ++QEL    N L G LP C+ ++T LR+LD+SSN+LTG++ SS L  L S+E L L D
Sbjct:   243 LNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYLSLFD 301

Query:   209 NHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATF 268
             N F    S   L N S L +    +   + ++  S S   P FQL  + L S   +    
Sbjct:   302 NDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRSCNMEKV-- 358

Query:   269 PKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLR 328
             P FL HQ DL +VDLS   ++G+ P+WLL NNTKLK L L N+ L   F++P  +H  L 
Sbjct:   359 PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNN-LFTSFQIPKSAHNLLF 417

Query:   329 QLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTG 388
              LDVS N+F    P  IG I P+L   N S N    ++PSS GN+N ++ +DLS N   G
Sbjct:   418 -LDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHG 476

Query:   389 EIPEHLAVGCVYLDFLALSNNSLEGKVL------SLLSGLDLSCNKLIGHIPPQIGNLTR 442
              +P     GC  +  L LS+N L G++       + + GL +  N   G I   + +L  
Sbjct:   477 NLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLIN 536

Query:   443 IQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
             ++ L++S+NNLTG+IPS    L  + +L +S N L G IP  L    +L++  L+ N+LS
Sbjct:   537 LELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLS 596

Query:   503 GEIP 506
             G IP
Sbjct:   597 GVIP 600

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.5e-56, P = 1.5e-56
 Identities = 155/417 (37%), Positives = 225/417 (53%)

Query:   117 IGESTP-SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTS 175
             +G   P SL+ L      LS      L  G+C LM L+EL   +N L  SLP+C+ N+T 
Sbjct:   326 LGLEIPTSLQVLDFKRNQLSLTHEGYL--GICRLMKLRELDLSSNALT-SLPYCLGNLTH 382

Query:   176 LRILDVSSNQLTGSIASSPLAHLTSI-EELHLSDNHFRIPISLEPLFNHSRLKIFDAENN 234
             LR LD+S+NQL G++ SS ++ L S+ E L L DN+F        L N +RL +F   ++
Sbjct:   383 LRTLDLSNNQLNGNL-SSFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKL-SS 440

Query:   235 ELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPN 294
             ++     ++ S   P FQL+ L LS+    G+T   FL HQ DL +VDLSH K+ G FP 
Sbjct:   441 KVGVIQVQTESSWAPLFQLKMLYLSN-CSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPT 499

Query:   295 WLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS 354
             WL++NNT+L+T+ L  +SL    +LPI  H  L+ LD+S+N     I  +IG + PNL  
Sbjct:   500 WLVKNNTRLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRF 557

Query:   355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK 414
              N S N   G+IPSS G +  L++LD+S+N L G++P     GC  L  L LSNN L+GK
Sbjct:   558 MNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGK 617

Query:   415 VLSL------LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 468
             + S       L GL L  N   G +   +     +  L++S N  +G++P     +  + 
Sbjct:   618 IFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLS 677

Query:   469 SLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTF 525
              L +S N+L G  P  L +   +EV  ++ N+ SG IP     F +  E   + N F
Sbjct:   678 YLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPR-NVNFPSLRELRLQNNEF 732

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 176/509 (34%), Positives = 257/509 (50%)

Query:    42 HNFTNLEYSTLSGS-SLHISLLQS--IASLFP--SLKNLS-MSYCEVNGVVRGQGFPHFK 95
             ++F N  +  L+ + SL    +QS  I    P   LKNL+ +   +++        P F 
Sbjct:   148 NSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIKELKNLTKLELLDLSRSGYNGSIPEFT 207

Query:    96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLS-LSDFTLSTN--SSRILDRGLCSLMHL 152
              LE L  +   ++ N  F  ++      LK L+ L    L+ N     I     C + +L
Sbjct:   208 HLEKL--KALDLSAN-DFSSLV--ELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNL 262

Query:   153 QELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR 212
             ++L    N   G LP C+ N+  LR+LD+SSNQL+G++ +S    L S+E L LSDN+F 
Sbjct:   263 RQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFE 321

Query:   213 IPISLEPLFNHSRLKIFD-AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKF 271
                SL PL N ++LK+F  +  +E+    TES  L  P FQL    L   +      P F
Sbjct:   322 GFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWL--PKFQLTVAALP--FCSLGKIPNF 377

Query:   272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLD 331
             L +Q +L  VDLS  +++G+ P WLLENN +LK L L N+S    F++P   HK L+ LD
Sbjct:   378 LVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLD 435

Query:   332 VSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIP 391
              S N+  G +P  IG +LP L+  N S N   G++PSS G +N +  LDLS N  +GE+P
Sbjct:   436 FSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELP 495

Query:   392 EHLAVGCVYLDFLALSNNSLEGKVLSL------LSGLDLSCNKLIGHIPPQIGNLTRIQT 445
               L  GC  L  L LS+NS  G +L +      L  L +  N   G I   +  L  +  
Sbjct:   496 RSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSI 555

Query:   446 LNLSHNNLTGLIPSTFS-NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504
              + S+N LTGLI S+   +  H+  L LS N L G +P  L+ +  L    L+ N LSG+
Sbjct:   556 FDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGD 615

Query:   505 IPEWKAQFATFNESSYEGNTFLCGLPLPI 533
             +P      + +    +  N    G PLP+
Sbjct:   616 LPSSVVN-SMYGIKIFLHNNSFTG-PLPV 642

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 2.8e-53, P = 2.8e-53
 Identities = 155/473 (32%), Positives = 244/473 (51%)

Query:    41 LHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL 100
             L +  NLE   L  +    S+L  +     SLK L +     + + +G GFP  + +   
Sbjct:    75 LGSLRNLETLDLGVNFYDTSVLPYLNEAV-SLKTLILH----DNLFKG-GFPVQELINLT 128

Query:   101 NMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNN 160
             ++E   +  N    Q+  +   +L+ L   D + +  S  +  +G+C L  LQEL    N
Sbjct:   129 SLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRN 188

Query:   161 DLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPL 220
                G +P C +  + LR+LD+SSN L+G I    ++   S+E L L DN F    SL  +
Sbjct:   189 RFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF-ISDFKSMEYLSLLDNDFEGLFSLGLI 247

Query:   221 FNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEY 280
                + LK+F   +     +I E+        QL  ++LS  + +    P FL++Q +L  
Sbjct:   248 TELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLS--HCNLGKIPGFLWYQQELRV 305

Query:   281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH 340
             +DLS+  ++G FP WLLENNT+L+ L L N+S      LP  + +RL+ LD+S NNF   
Sbjct:   306 IDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLP-RTMRRLQILDLSVNNFNNQ 363

Query:   341 IPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVY 400
             +P ++G IL +L   N+S N   G++PSS   +  ++ +DLS N  +G++P +L  GC  
Sbjct:   364 LPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYS 423

Query:   401 LDFLALSNNSLEGKVL-------SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 453
             L +L LS+N   G ++       SL++ L +  N   G IP  + NL  +  ++LS+N L
Sbjct:   424 LSWLKLSHNRFSGPIIRKSSDETSLIT-LIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLL 482

Query:   454 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
             TG IP    N   +E L +S N+L G IP  L  +  L +  L+ N LSG +P
Sbjct:   483 TGTIPRWLGNF-FLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLP 534

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 158/500 (31%), Positives = 255/500 (51%)

Query:    43 NFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNM 102
             N T L    LS +     +   I SL  +LK LS+S   ++G +  Q       L +L++
Sbjct:    88 NLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIP-QELGLLNRLVYLDL 146

Query:   103 ERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDL 162
                R+  +         S+ SL+Y+ LS+ +L+     I     C L  L+ L   +N L
Sbjct:   147 GSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLT---GEIPLNYHCHLKELRFLLLWSNKL 203

Query:   163 RGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF---RIPISLEP 219
              G++P  ++N T+L+ +D+ SN L+G + S  ++ +  ++ L+LS NHF       +LEP
Sbjct:   204 TGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEP 263

Query:   220 LF----NHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQ 275
              F    N S L+  +   N L  EIT S    + N    +L  +  +G   + P  + + 
Sbjct:   264 FFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHG---SIPPEISNL 320

Query:   276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN 335
              +L  ++LS   ++G  P  L + + KL+ ++L N+ L G   + +    RL  LDVS N
Sbjct:   321 LNLTLLNLSSNLLSGPIPRELCKLS-KLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRN 379

Query:   336 NFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLA 395
             N  G IP   G+ L  L    +  N L G++P S G    L+ILDLS+N LTG IP  + 
Sbjct:   380 NLSGSIPDSFGN-LSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVV 438

Query:   396 VGCVYLD-FLALSNNSLEGKV------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 448
                  L  +L LS+N L G +      + ++  +DLS N+L G IPPQ+G+   ++ LNL
Sbjct:   439 SNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNL 498

Query:   449 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508
             S N  +  +PS+   L +++ LD+S+N+L G IP    +  TL+  + +FN LSG + + 
Sbjct:   499 SRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSD- 557

Query:   509 KAQFATFNESSYEGNTFLCG 528
             K  F+     S+ G++ LCG
Sbjct:   558 KGSFSKLTIESFLGDSLLCG 577

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 1.4e-51, P = 1.4e-51
 Identities = 161/477 (33%), Positives = 238/477 (49%)

Query:    39 QELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLE 98
             + L    NL+    S +  + S+   + +   SL  LS+    + G +  +   +  +LE
Sbjct:   115 KSLRRLRNLQILNFSSNEFNNSIFPFLNAA-TSLTTLSLRRNNMYGPIPLKELKNLTNLE 173

Query:    99 HLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKV 158
              L++   RI  +    +      P LK L   D + +   S +  +  C + +LQEL   
Sbjct:   174 LLDLSGNRIDGSMPVREF-----PYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLR 228

Query:   159 NNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLE 218
               +  G LP C  N+  LR LD+SSNQLTG+I  S  + L S+E L LSDN F    SL 
Sbjct:   229 GINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGFFSLN 287

Query:   219 PLFNHSRLK--IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQH 276
             PL N ++LK  IF ++++ +  +I  ++    P FQL  L+L     +    P FL +Q 
Sbjct:   288 PLTNLTKLKVFIFSSKDDMVQVKIESTWQ---PLFQLSVLVLRLCSLE--KIPNFLMYQK 342

Query:   277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 336
             +L  VDLS  +++G  P WLLENN +L+ L L N+S    F++P   H  L+ LD S NN
Sbjct:   343 NLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHN-LQVLDFSENN 400

Query:   337 FQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV 396
               G  P   G +LPNL+  N S N   G+ PSS G +  +  LDLS N L+GE+P+    
Sbjct:   401 IGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVS 460

Query:   397 GCVYLDFLALSNNSLEGKVL------SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 450
              C  L  L LS+N   G  L      + L  L ++ N   G I   +  L  +  L++S+
Sbjct:   461 SCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSN 520

Query:   451 NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
             N L G +P      +++  LDLS N L+G +P   V L    V  L  NN +G IP+
Sbjct:   521 NFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSH-VSLDN--VLFLHNNNFTGPIPD 574

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 2.5e-48, P = 2.5e-48
 Identities = 169/526 (32%), Positives = 264/526 (50%)

Query:    19 SLNTLYLKHNNFXXXXXXXXQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMS 78
             SL  L L +N+          EL   T+L Y  L  ++L  +L  SI++L  +L+ L + 
Sbjct:   361 SLKQLDLSNNSLAGSIPEALFELVELTDL-Y--LHNNTLEGTLSPSISNL-TNLQWLVLY 416

Query:    79 YCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNS 138
             +  + G +  +     + LE L +   R +      Q IG  T SLK + +       + 
Sbjct:   417 HNNLEGKLPKE-ISALRKLEVLFLYENRFSGEIP--QEIGNCT-SLKMIDM----FGNHF 468

Query:   139 SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHL 198
                +   +  L  L  L+   N+L G LP  + N   L ILD++ NQL+GSI SS    L
Sbjct:   469 EGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSS-FGFL 527

Query:   199 TSIEELHLSDNHFR--IPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYL 256
               +E+L L +N  +  +P SL  L N +R+ +    +N LN  I   + L   +  L + 
Sbjct:   528 KGLEQLMLYNNSLQGNLPDSLISLRNLTRINL---SHNRLNGTI---HPLCGSSSYLSFD 581

Query:   257 LLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGP 316
             + ++G+ D    P  L +  +L+ + L   ++ G+ P W L    +L  L + +++L G 
Sbjct:   582 VTNNGFED--EIPLELGNSQNLDRLRLGKNQLTGKIP-WTLGKIRELSLLDMSSNALTGT 638

Query:   317 FRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLL 376
               L +   K+L  +D++NN   G IP  +G  L  L    +S N    S+P+   N   L
Sbjct:   639 IPLQLVLCKKLTHIDLNNNFLSGPIPPWLGK-LSQLGELKLSSNQFVESLPTELFNCTKL 697

Query:   377 KILDLSNNQLTGEIPEHLA-VGCVYLDFLALSNNSLEGKV------LSLLSGLDLSCNKL 429
              +L L  N L G IP+ +  +G   L+ L L  N   G +      LS L  L LS N L
Sbjct:   698 LVLSLDGNSLNGSIPQEIGNLGA--LNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSL 755

Query:   430 IGHIPPQIGNLTRIQT-LNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 488
              G IP +IG L  +Q+ L+LS+NN TG IPST   L  +E+LDLS+N+L G++P  + ++
Sbjct:   756 TGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDM 815

Query:   489 KTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 534
             K+L   +++FNNL G++   K QF+ +   S+ GNT LCG PL  C
Sbjct:   816 KSLGYLNVSFNNLGGKL---KKQFSRWPADSFLGNTGLCGSPLSRC 858

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 1.7e-47, P = 1.7e-47
 Identities = 163/487 (33%), Positives = 243/487 (49%)

Query:   127 LSLSDFTLSTN--SSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSN 184
             +S+    LS N  S R L R   +   L  L   NN   G++   ++N T LRILD+S+N
Sbjct:   463 VSIMFLKLSHNKFSGRFLPRET-NFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNN 521

Query:   185 QLTGSIASSPLAHLTSIEELHLSDNHFR--IPISLEPLFNHSRLKIFDAENNELNAEITE 242
              L+G+I    L     ++ + +S+N     IP SL        L   D   N+ +  +  
Sbjct:   522 GLSGAIPRW-LFEFPYLDYVLISNNFLEGTIPPSL---LGMPFLSFLDLSGNQFSGALP- 576

Query:   243 SYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTK 302
               S       + Y+ L +    G   P  L     ++ +DL + K++G  P +  ++   
Sbjct:   577 --SHVDSELGI-YMFLHNNNFTGP-IPDTLLKS--VQILDLRNNKLSGSIPQF--DDTQS 628

Query:   303 LKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIP-----LEIGDILPNLISFNI 357
             +  L L  ++L G     +     +R LD+S+N   G IP     L  G +  + ++ NI
Sbjct:   629 INILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALNI 688

Query:   358 SMNALDGSIPSSFGNINLL--KI-LDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK 414
               + L  S+         L  KI +D S  Q T EI    A    Y  +   S  S EG 
Sbjct:   689 PPSFLQTSLEMELYKSTFLVDKIEVDRSTYQET-EIK--FAAKQRYDSYSGRSEFS-EG- 743

Query:   415 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 474
             +L L+ G+DLS N+L G IP ++G+L +++TLNLSHN+L G IPS+FS L  +ESLDLS+
Sbjct:   744 ILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSH 803

Query:   475 NKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP-I 533
             N L G IP  L  L +L VF ++ NNLSG IP+ + QF TF E SY GN  LCG P    
Sbjct:   804 NMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNTFEEESYLGNPLLCGPPTSRS 862

Query:   534 CRSPATTPEASIGNERDDN--LIDMDNFFITFTTSYVIVIFGIVVVLYVNPYWRCRWFYF 591
             C +  +  EA  G E +D+   IDM  F+ +  + YV  + G++V++  +  WR  W   
Sbjct:   863 CETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRI 922

Query:   592 VEMWITS 598
             V+ +I S
Sbjct:   923 VDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 7.6e-46, P = 7.6e-46
 Identities = 181/602 (30%), Positives = 286/602 (47%)

Query:    13 SMGSLPSLNTLYLKHNNFXXXXXXXXQELHNFTNLEYSTLSGSSLHIS-LLQSIASLFPS 71
             S+G+L SL  L+L   +F          + N ++L +  LS S   I  ++ +     P 
Sbjct:   205 SLGNLQSLQYLWL---DFNLLQGTLPSAISNCSSLVH--LSASENEIGGVIPAAYGALPK 259

Query:    72 LKNLSMSYCEVNGVVRGQGFPHFK-SLEHLNMERAR--IAPNTSF-----LQIIG--EST 121
             L+ LS+S    +G V    F +   ++  L        + P T+      LQ++   E+ 
Sbjct:   260 LEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENR 319

Query:   122 PSLKY-------LSLSDFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM 173
              S ++       LSL +  +S N  S  +   + +L  L+EL   NN L G +P  +   
Sbjct:   320 ISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQC 379

Query:   174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR--IPISLEPLFNHSRLKIFDA 231
              SL +LD   N L G I    L ++ +++ L L  N F   +P S+  L    RL +   
Sbjct:   380 GSLDVLDFEGNSLKGQIPEF-LGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNL--G 436

Query:   232 ENNELNAEI-TESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG 290
             ENN LN     E  +LT+    L  L LS     GA  P  + +  +L +++LS    +G
Sbjct:   437 ENN-LNGSFPVELMALTS----LSELDLSGNRFSGAV-PVSISNLSNLSFLNLSGNGFSG 490

Query:   291 EFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP 350
             E P   + N  KL  L L   +++G   + +     ++ + +  NNF G +P     ++ 
Sbjct:   491 EIPA-SVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLV- 548

Query:   351 NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS 410
             +L   N+S N+  G IP +FG + LL  L LS+N ++G IP  +   C  L+ L L +N 
Sbjct:   549 SLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIG-NCSALEVLELRSNR 607

Query:   411 LEGKV------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL 464
             L G +      L  L  LDL  N L G IPP+I   + + +L+L HN+L+G+IP +FS L
Sbjct:   608 LMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGL 667

Query:   465 KHIESLDLSYNKLNGKIPHQLVELKT-LEVFSLAFNNLSGEIPEWKAQFATFNESSYEGN 523
              ++  +DLS N L G+IP  L  + + L  F+++ NNL GEIP         N S + GN
Sbjct:   668 SNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN-NTSEFSGN 726

Query:   524 TFLCGLPLPICRSPATTPEASIGNERDDNLIDMDNFFITFTTSYVIVIFGIVVVLYVNPY 583
             T LCG PL   R  ++T E   G ++   +I M    +    ++++ +F    V Y    
Sbjct:   727 TELCGKPLNR-RCESSTAE---GKKKKRKMILM--IVMAAIGAFLLSLFCCFYV-YTLLK 779

Query:   584 WR 585
             WR
Sbjct:   780 WR 781

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	614
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-45
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-27
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  171 bits (436), Expect = 5e-45
 Identities = 164/543 (30%), Positives = 269/543 (49%), Gaps = 69/543 (12%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
           GS+P+L TL L +N  +G       ++ +F++L+   L G+ L   +  S+ +L  SL+ 
Sbjct: 137 GSIPNLETLDLSNNMLSGE---IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEF 192

Query: 75  LSMSYCEVNGVVRGQGFPH----FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLS 130
           L+++  ++ G       P      KSL+ + +    ++    +   IG  T SL +L L 
Sbjct: 193 LTLASNQLVG-----QIPRELGQMKSLKWIYLGYNNLSGEIPYE--IGGLT-SLNHLDL- 243

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
              +  N +  +   L +L +LQ L+   N L G +P  + ++  L  LD+S N L+G I
Sbjct: 244 ---VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 191 ASSPLAHLTSIEELHLSDNHF--RIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTT 248
               +  L ++E LHL  N+F  +IP++L  L    RL++    +N+ + EI        
Sbjct: 301 PEL-VIQLQNLEILHLFSNNFTGKIPVALTSL---PRLQVLQLWSNKFSGEI-------- 348

Query: 249 PNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFL 308
                               PK L   ++L  +DLS   + GE P  L  ++  L  L L
Sbjct: 349 --------------------PKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLIL 387

Query: 309 VNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS 368
            ++SL G     + + + LR++ + +N+F G +P E    LP +   +IS N L G I S
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINS 446

Query: 369 SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV------LSLLSGL 422
              ++  L++L L+ N+  G +P+  + G   L+ L LS N   G V      LS L  L
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504

Query: 423 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 482
            LS NKL G IP ++ +  ++ +L+LSHN L+G IP++FS +  +  LDLS N+L+G+IP
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Query: 483 HQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCG----LPLPICRSPA 538
             L  +++L   +++ N+L G +P   A F   N S+  GN  LCG      LP C+   
Sbjct: 565 KNLGNVESLVQVNISHNHLHGSLPSTGA-FLAINASAVAGNIDLCGGDTTSGLPPCKRVR 623

Query: 539 TTP 541
            TP
Sbjct: 624 KTP 626

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  150 bits (381), Expect = 4e-38
 Identities = 86/236 (36%), Positives = 136/236 (57%), Gaps = 10/236 (4%)

Query: 278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNF 337
           ++ ++LS+ +++G  P+ +   ++ L+ L L N++  G   +P  S   L  LD+SNN  
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS--IPRGSIPNLETLDLSNNML 152

Query: 338 QGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVG 397
            G IP +IG    +L   ++  N L G IP+S  N+  L+ L L++NQL G+IP  L   
Sbjct: 153 SGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-Q 210

Query: 398 CVYLDFLALSNNSLEGKV------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 451
              L ++ L  N+L G++      L+ L+ LDL  N L G IP  +GNL  +Q L L  N
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270

Query: 452 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
            L+G IP +  +L+ + SLDLS N L+G+IP  +++L+ LE+  L  NN +G+IP 
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  116 bits (292), Expect = 5e-27
 Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 4/169 (2%)

Query: 352 LISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL 411
           ++S ++S   + G I S+   +  ++ ++LSNNQL+G IP+ +      L +L LSNN+ 
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 412 EGKV----LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI 467
            G +    +  L  LDLS N L G IP  IG+ + ++ L+L  N L G IP++ +NL  +
Sbjct: 131 TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 468 ESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFN 516
           E L L+ N+L G+IP +L ++K+L+   L +NNLSGEIP       + N
Sbjct: 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 87.2 bits (216), Expect = 6e-18
 Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 9/134 (6%)

Query: 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
            + GL L    L G IP  I  L  +Q++NLS N++ G IP +  ++  +E LDLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 478 NGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKA----QFATFNESSYEGNTFLCGLP-LP 532
           NG IP  L +L +L + +L  N+LSG +P          A+FN   +  N  LCG+P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 533 ICRSPATTPEASIG 546
            C  P  +  A IG
Sbjct: 536 AC-GPHLSVGAKIG 548

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 330 LDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE 389
           L + N   +G IP +I   L +L S N+S N++ G+IP S G+I  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 390 IPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDL 424
           IPE L      L  L L+ NSL G+V + L G  L
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.9 bits (158), Expect = 8e-11
 Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 9/134 (6%)

Query: 404 LALSNNSLEGKVLSLLSGL------DLSCNKLIGHIPPQIGNLT-RIQTLNLSHNNLTGL 456
           + LS  ++ GK+ S +  L      +LS N+L G IP  I   +  ++ LNLS+NN TG 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 457 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFN 516
           IP     + ++E+LDLS N L+G+IP+ +    +L+V  L  N L G+IP       +  
Sbjct: 134 IPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191

Query: 517 ESSYEGNTFLCGLP 530
             +   N  +  +P
Sbjct: 192 FLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 417 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYN 475
           S +  +DLS   + G I   I  L  IQT+NLS+N L+G IP   F+    +  L+LS N
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 476 KLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI 533
              G IP   +    LE   L+ N LSGEIP     F++       GN  +  +P  +
Sbjct: 129 NFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 56/264 (21%), Positives = 94/264 (35%), Gaps = 42/264 (15%)

Query: 269 PKFLYHQHDLEYVDLSHTKMNGEFPNWL-----LENNTKLKTLFLVNDSL--AGPFRLP- 320
              L  Q  L+ + LS  +              L     L+ L L +++L   G   L  
Sbjct: 44  ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103

Query: 321 IHSHKRLRQLDVSNNNFQG----HIPLEIGDILPNLISFNISMNALDG----SIPSSFGN 372
           +     L++L ++NN         +   + D+ P L    +  N L+G    ++  +   
Sbjct: 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163

Query: 373 INLLKILDLSNNQLTGEIPEHLAVGCVY---LDFLALSNNSLEGKVLSLLSGLDLSCNKL 429
              LK L+L+NN +       LA G      L+ L L+NN L           D      
Sbjct: 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT----------DEGA-SA 212

Query: 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN-----LKHIESLDLSYNKLNGKIPHQ 484
           +      + +L   + LNL  NNLT    +  ++        + +L LS N +       
Sbjct: 213 LAETLASLKSL---EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD 269

Query: 485 LVEL----KTLEVFSLAFNNLSGE 504
           L E+    ++L    L  N    E
Sbjct: 270 LAEVLAEKESLLELDLRGNKFGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 149 LMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSD 208
           L HLQ +    N +RG++P  + ++TSL +LD+S N   GSI  S L  LTS+  L+L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 209 NHF--RIPISL 217
           N    R+P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.0 bits (132), Expect = 6e-08
 Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 14/228 (6%)

Query: 297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN 356
           L   T L +L L N+++     L       L++LD+S+N  +  +P  + + LPNL + +
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD 169

Query: 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG--- 413
           +S N L   +P    N++ L  LDLS N+++ ++P  + +    L+ L LSNNS+     
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSIIELLS 226

Query: 414 --KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLD 471
               L  LSGL+LS NKL   +P  IGNL+ ++TL+LS+N ++    S+  +L ++  LD
Sbjct: 227 SLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELD 283

Query: 472 LSYNKLNGKIP-HQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNES 518
           LS N L+  +P   L+ L    + +L     + E+            S
Sbjct: 284 LSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILS 331

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 9e-08
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 422 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
           LDLS N+L   IP      L  ++ L+LS NNLT + P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNL 501
            +++L+LS+N LT +    F  L +++ LDLS N L    P     L +L    L+ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 67/286 (23%), Positives = 104/286 (36%), Gaps = 32/286 (11%)

Query: 172 NMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF-RIP----ISLEPLFNHSRL 226
            +  LR+   +  +      +S L    S++EL LS N   RIP      L+ L     L
Sbjct: 24  CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83

Query: 227 KIFDAENNELNAEITESYSLTTPNFQLQYL-LLSSGYGDGATFPKFL-----YHQHDLEY 280
           +  D  +N L  +          +  LQ L L ++G GD     + L          LE 
Sbjct: 84  QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--RLLAKGLKDLPPALEK 141

Query: 281 VDLSHTKMNGEFPNWLLE---NNTKLKTLFLVNDSLAGP-FRLPIH---SHKRLRQLDVS 333
           + L   ++ G     L +    N  LK L L N+ +     R       ++  L  LD++
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 334 NNNF--QGHIPLEIG-DILPNLISFNISMNALDGSIPSSFGNINL-----LKILDLSNNQ 385
           NN    +G   L      L +L   N+  N L  +  ++  +  L     L  L LS N 
Sbjct: 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

Query: 386 LTGEIPEHLAVGC---VYLDFLALSNNSLEGKVLSLLSGLDLSCNK 428
           +T +  + LA        L  L L  N   G+  + L    L    
Sbjct: 262 ITDDGAKDLAEVLAEKESLLELDLRGNKF-GEEGAQLLAESLLEPG 306

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 110 NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWC 169
           N +   I           +L +  LS N    L   L +L +L+ L    NDL   LP  
Sbjct: 125 NNNITDIPPLIGLLKS--NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKL 181

Query: 170 VANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF 229
           ++N+++L  LD+S N++  S     +  L+++EEL LS+N   I   L  L N   L   
Sbjct: 182 LSNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNS--IIELLSSLSNLKNLSGL 237

Query: 230 DAENNELNAEIT 241
           +  NN+L     
Sbjct: 238 ELSNNKLEDLPE 249

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 39/204 (19%)

Query: 303 LKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNAL 362
           +KTL+  ++ L     +P      ++++++S N     +P  +   L +L  F+  ++ L
Sbjct: 222 IKTLYANSNQLT---SIPATLPDTIQEMELSINRIT-ELPERLPSALQSLDLFHNKISCL 277

Query: 363 DGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGL 422
             ++P        L+ L + +N +   +P HL  G  +L+   + +NSL     +L  GL
Sbjct: 278 PENLPEE------LRYLSVYDNSIRT-LPAHLPSGITHLN---VQSNSLTALPETLPPGL 327

Query: 423 ------DLSCNKLIGHIPPQIGNLT---------------RIQTLNLSHNNLTGLIPSTF 461
                 + +   L   +PP++  L                 I TL++S N LT L  +  
Sbjct: 328 KTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP 387

Query: 462 SNLKHIESLDLSYNKLNGKIPHQL 485
           + L+ +++   S N L  ++P  L
Sbjct: 388 AALQIMQA---SRNNL-VRLPESL 407

Length = 754

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 13/132 (9%)

Query: 89  QGFPHFKSLEHLNMERARIAPNTSFLQIIGES----TPSLKYLSLSDFTLSTNSSRILDR 144
           +      SL+ L +    +      L+++ +      P+L+ L L    L   S   L +
Sbjct: 102 ESLLRSSSLQELKLNNNGLGD--RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159

Query: 145 GLCSLMHLQELYKVNNDLRG----SLPWCVANMTSLRILDVSSNQLT---GSIASSPLAH 197
            L +   L+EL   NN +      +L   +    +L +LD+++N LT    S  +  LA 
Sbjct: 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219

Query: 198 LTSIEELHLSDN 209
           L S+E L+L DN
Sbjct: 220 LKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 45/200 (22%), Positives = 72/200 (36%), Gaps = 22/200 (11%)

Query: 6   DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQE--LHNFTNLEYSTLSGSSLHISLLQ 63
           DG  +L+S+    SL  L L +N           +        LE   L  + L  +  +
Sbjct: 96  DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155

Query: 64  SIASLFP---SLKNLSMSYCEVNGVVRGQG-------FPHFKSLEHLNMERARIAP-NTS 112
           ++A        LK L+++    N  +   G            +LE L++    +     S
Sbjct: 156 ALAKALRANRDLKELNLA----NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211

Query: 113 FLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMH-LQELYKVNNDL--RGSLPWC 169
            L     S  SL+ L+L D  L+   +  L   L S    L  L    ND+   G+    
Sbjct: 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA 271

Query: 170 --VANMTSLRILDVSSNQLT 187
             +A   SL  LD+  N+  
Sbjct: 272 EVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 11/143 (7%)

Query: 365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS------LEGKVLSL 418
               +  N+  L  LDL+ N+L   I E L +    L  L L NN+      L G + S 
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELT--NLTSLDLDNNNITDIPPLIGLLKSN 141

Query: 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
           L  LDLS NK I  +P  + NL  ++ L+LS N+L+ L     SNL ++ +LDLS NK++
Sbjct: 142 LKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKIS 199

Query: 479 GKIPHQLVELKTLEVFSLAFNNL 501
             +P ++  L  LE   L+ N++
Sbjct: 200 -DLPPEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 56/245 (22%), Positives = 92/245 (37%), Gaps = 39/245 (15%)

Query: 10  LLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA--- 66
           LLQ +     L  L L  N          + L   ++L+   L+ + L    L+ +A   
Sbjct: 73  LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 67  -SLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLK 125
             L P+L+ L +                   LE  + E          L+    +   LK
Sbjct: 133 KDLPPALEKLVLGRN---------------RLEGASCEAL-----AKALR----ANRDLK 168

Query: 126 YLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLR----GSLPWCVANMTSLRILDV 181
            L+L++  +     R L  GL +  +L+ L   NN L      +L   +A++ SL +L++
Sbjct: 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228

Query: 182 SSNQLTG----SIASSPLAHLTSIEELHLSDNHFRIPIS---LEPLFNHSRLKIFDAENN 234
             N LT     ++AS+ L+   S+  L LS N      +    E L     L   D   N
Sbjct: 229 GDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288

Query: 235 ELNAE 239
           +   E
Sbjct: 289 KFGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 26/114 (22%)

Query: 281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH 340
           + L +  + G  PN  +     L+++ L  +S+ G     + S   L  LD+S N+F   
Sbjct: 423 LGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF--- 478

Query: 341 IPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHL 394
                                 +GSIP S G +  L+IL+L+ N L+G +P  L
Sbjct: 479 ----------------------NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQ 385
            L+ LD+SNN     IP      LPNL   ++S N L    P +F  +  L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 386 L 386
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 62/271 (22%), Positives = 94/271 (34%), Gaps = 53/271 (19%)

Query: 92  PHFKSLEHLN---MERARIAPNTSFLQIIGE---STPSLKYLSLSDFTLSTNSSRILDRG 145
               SL+ L     E  RI      LQ + +       L+ L LSD  L  +   +L+  
Sbjct: 48  RPQPSLKELCLSLNETGRI---PRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES- 103

Query: 146 LCSLMHLQELYKVNNDLRGSLPWCVA-----NMTSLRILDVSSNQLTGSIA---SSPLAH 197
           L     LQEL   NN L       +A        +L  L +  N+L G+     +  L  
Sbjct: 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163

Query: 198 LTSIEELHLSDNHFR---IPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQ 254
              ++EL+L++N      I    E L  +  L++ D  NN L  E               
Sbjct: 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE--------------- 208

Query: 255 YLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG----EFPNWLLENNTKLKTLFLVN 310
                   G  A   + L     LE ++L    +         + LL  N  L TL L  
Sbjct: 209 --------GASA-LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259

Query: 311 DSL----AGPFRLPIHSHKRLRQLDVSNNNF 337
           + +    A      +   + L +LD+  N F
Sbjct: 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	614
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
PLN03150	623	hypothetical protein; Provisional	99.48
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
PLN03150	623	hypothetical protein; Provisional	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.64
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.55
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.04
PRK15386	426	type III secretion protein GogB; Provisional	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.82
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
PRK15386	426	type III secretion protein GogB; Provisional	97.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.8
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.72
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.53
KOG4341	483	consensus F-box protein containing LRR [General fu	97.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.83
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.66
KOG4341	483	consensus F-box protein containing LRR [General fu	96.56
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.78
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.46
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	94.45
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.31
KOG4308	478	consensus LRR-containing protein [Function unknown	93.46
KOG4308	478	consensus LRR-containing protein [Function unknown	92.46
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.1
smart00370	26	LRR Leucine-rich repeats, outliers.	92.1
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.74
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.17
smart00370	26	LRR Leucine-rich repeats, outliers.	91.17
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.38
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.57
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.28
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	82.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.97
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.26

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.6e-56  Score=513.91  Aligned_cols=499  Identities=29%  Similarity=0.416  Sum_probs=403.2

Q ss_pred             ccccccCCCCCCCEEECCCcccCCCCCCCCc--ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCcc
Q 042884            9 KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ--ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVV   86 (614)
Q Consensus         9 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~   86 (614)
                      .+++.|..+++|++|+|++|++++.    +|  .+..+++|++|++++|.+.+..|.  ..+++|+++++++|.+.+.+|
T Consensus        84 ~~~~~~~~l~~L~~L~Ls~n~~~~~----ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p  157 (968)
T PLN00113         84 KISSAIFRLPYIQTINLSNNQLSGP----IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP  157 (968)
T ss_pred             cCChHHhCCCCCCEEECCCCccCCc----CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCC
Confidence            3566788888888888888888754    44  345788888888888888766654  456788888888888776666


Q ss_pred             CCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc
Q 042884           87 RGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL  166 (614)
Q Consensus        87 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~  166 (614)
                      .  .++++++|++|++++|.+.+  .+|..+.+ +++|++|++++|.+.+   .+|. .+..+++|++|++++|++++.+
T Consensus       158 ~--~~~~l~~L~~L~L~~n~l~~--~~p~~~~~-l~~L~~L~L~~n~l~~---~~p~-~l~~l~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        158 N--DIGSFSSLKVLDLGGNVLVG--KIPNSLTN-LTSLEFLTLASNQLVG---QIPR-ELGQMKSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             h--HHhcCCCCCEEECccCcccc--cCChhhhh-CcCCCeeeccCCCCcC---cCCh-HHcCcCCccEEECcCCccCCcC
Confidence            3  57888888888888888776  77777777 8888888888888875   5555 7888888888888888888888


Q ss_pred             CccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccC
Q 042884          167 PWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSL  246 (614)
Q Consensus       167 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  246 (614)
                      |..+.++++|++|++++|.+.+.+|.. ++++++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..+..
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            888888888888888888888777764 7888888888888888876555 45778888888888888887766554443


Q ss_pred             CCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCc
Q 042884          247 TTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKR  326 (614)
Q Consensus       247 ~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~  326 (614)
                         ..+|+.|++ .++...+..|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.+..+..+..+++
T Consensus       307 ---l~~L~~L~l-~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        307 ---LQNLEILHL-FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             ---CCCCcEEEC-CCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH-HhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence               347888888 667777778888888888888888888888777776 677888888888888888777777778888


Q ss_pred             cCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEc
Q 042884          327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLAL  406 (614)
Q Consensus       327 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l  406 (614)
                      |+.|++++|.+.+.+|..+.. +++|+.|++++|++++..|..|..+++|+.|++++|.+++.+|..+ ..+++|+.|++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~-~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L  459 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK-WDMPSLQMLSL  459 (968)
T ss_pred             CCEEECcCCEecccCCHHHhC-CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh-ccCCCCcEEEC
Confidence            888888888888777776665 8888888888888888888888888888888888888886666554 56888888888


Q ss_pred             cCCcccccc-----cCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCC
Q 042884          407 SNNSLEGKV-----LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI  481 (614)
Q Consensus       407 ~~n~l~~~~-----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~  481 (614)
                      ++|++.+..     .++|+.|++++|++++..|..+..+++|+.|++++|.+.+.+|..+.++++|++|++++|.+++.+
T Consensus       460 ~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             cCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence            888877643     356888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884          482 PHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       482 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      |..|..+++|+.|++++|++++.+|..+..+..++.+++++|++.+..|.
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            88888888888888888888888888788888888888888888776553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.1e-56  Score=509.36  Aligned_cols=497  Identities=31%  Similarity=0.450  Sum_probs=449.7

Q ss_pred             cccccc-CCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccC
Q 042884            9 KLLQSM-GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVR   87 (614)
Q Consensus         9 ~l~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~   87 (614)
                      .+|..+ ..+++|++|+|++|++++.    +| ...+++|++|++++|.+.+..|..+..+.+|+++++.+|.+.+.+|.
T Consensus       108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~----~p-~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  182 (968)
T PLN00113        108 PIPDDIFTTSSSLRYLNLSNNNFTGS----IP-RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN  182 (968)
T ss_pred             cCChHHhccCCCCCEEECcCCccccc----cC-ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence            567654 4899999999999999875    44 35688999999999999989999999999999999999998877774


Q ss_pred             CCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccC
Q 042884           88 GQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLP  167 (614)
Q Consensus        88 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~  167 (614)
                        .+.++++|++|++++|.+.+  .+|..+.. +++|++|++++|.+.+   .+|. .+.++++|++|++++|.+++..|
T Consensus       183 --~~~~l~~L~~L~L~~n~l~~--~~p~~l~~-l~~L~~L~L~~n~l~~---~~p~-~l~~l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        183 --SLTNLTSLEFLTLASNQLVG--QIPRELGQ-MKSLKWIYLGYNNLSG---EIPY-EIGGLTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             --hhhhCcCCCeeeccCCCCcC--cCChHHcC-cCCccEEECcCCccCC---cCCh-hHhcCCCCCEEECcCceeccccC
Confidence              68999999999999999987  78899988 9999999999999986   6666 89999999999999999999999


Q ss_pred             ccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCC
Q 042884          168 WCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLT  247 (614)
Q Consensus       168 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  247 (614)
                      ..+.++++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..+.. 
T Consensus       254 ~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-  330 (968)
T PLN00113        254 SSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTS-  330 (968)
T ss_pred             hhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChhHhc-
Confidence            99999999999999999999888765 7899999999999999987666 56789999999999999998776655543 


Q ss_pred             CCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCcc
Q 042884          248 TPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL  327 (614)
Q Consensus       248 ~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L  327 (614)
                        .++|+.|++ .++...+..|..+..+++|+.|++++|++.+.+|.. +..+++|+.|++++|.+.+..+..+..+++|
T Consensus       331 --l~~L~~L~L-~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L  406 (968)
T PLN00113        331 --LPRLQVLQL-WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEIPKSLGACRSL  406 (968)
T ss_pred             --CCCCCEEEC-cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence              348999999 677788889999999999999999999999888887 6778999999999999999888889999999


Q ss_pred             CEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEcc
Q 042884          328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALS  407 (614)
Q Consensus       328 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  407 (614)
                      +.|++++|.+++.+|..+.. +++|+.|++++|.+++..+..+..+++|+.|++++|++.+.+|..+  ..++|+.|+++
T Consensus       407 ~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls  483 (968)
T PLN00113        407 RRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLS  483 (968)
T ss_pred             CEEECcCCEeeeECChhHhc-CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc--ccccceEEECc
Confidence            99999999999888877655 9999999999999999999999999999999999999998888754  56899999999


Q ss_pred             CCcccccc------cCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCC
Q 042884          408 NNSLEGKV------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI  481 (614)
Q Consensus       408 ~n~l~~~~------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~  481 (614)
                      +|++++..      +++|+.|++++|++.+.+|..+.++++|++|+|++|.+++.+|..|..+++|+.|++++|++++.+
T Consensus       484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  563 (968)
T PLN00113        484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI  563 (968)
T ss_pred             CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence            99998643      568999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          482 PHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       482 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      |..+..+++|+.+++++|++.+.+|. ...+..+....+.||+..|+.+
T Consensus       564 p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        564 PKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999997 4667778888899999999743

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-45  Score=358.64  Aligned_cols=393  Identities=24%  Similarity=0.271  Sum_probs=303.5

Q ss_pred             CcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCC
Q 042884          123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIE  202 (614)
Q Consensus       123 ~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  202 (614)
                      .-++|++++|.++    .+....|.++++|+.+++.+|.++ .+|..-....+|+.|+|.+|.|. ++....+..++.|+
T Consensus        79 ~t~~LdlsnNkl~----~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alr  152 (873)
T KOG4194|consen   79 QTQTLDLSNNKLS----HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALR  152 (873)
T ss_pred             ceeeeeccccccc----cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhh
Confidence            3455777777776    454446677777777777777776 56655555556777777777776 56655566777777


Q ss_pred             EEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEE
Q 042884          203 ELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVD  282 (614)
Q Consensus       203 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~  282 (614)
                      .|||+.|.|+ .++...|..-.++++|+|++|+|+.....                            .|.++.+|..|.
T Consensus       153 slDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~----------------------------~F~~lnsL~tlk  203 (873)
T KOG4194|consen  153 SLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETG----------------------------HFDSLNSLLTLK  203 (873)
T ss_pred             hhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccc----------------------------cccccchheeee
Confidence            7777777766 55555666666677777777776654332                            334556778888


Q ss_pred             ccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcC
Q 042884          283 LSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNAL  362 (614)
Q Consensus       283 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l  362 (614)
                      |++|+++ .+|...|..+++|+.|+|..|+|..+...+|.++++|+.|.+..|.|. .+.+++|-++.++++|+|+.|++
T Consensus       204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchh
Confidence            8888887 777777888888888888888888777778888888888888888887 66666666688888888888888


Q ss_pred             CCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc------cccCCccEEEcCCCcCCccCCcc
Q 042884          363 DGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQ  436 (614)
Q Consensus       363 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~L~~L~L~~n~l~~~~~~~  436 (614)
                      ...-.+++-++++|+.|++|+|.|. .+.......+++|++|+|++|+++.      ..++.|++|.|++|.+...-..+
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a  360 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA  360 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence            8777777888888888888888887 5554445677888888888888775      33677888999999998888889


Q ss_pred             ccCCCcCCEEECcCCcCCCCCC---cCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccC
Q 042884          437 IGNLTRIQTLNLSHNNLTGLIP---STFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA  513 (614)
Q Consensus       437 ~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  513 (614)
                      |.++++|++|||++|.+++.+.   ..|.++++|+.|++.+|+|..+...+|.+++.|+.|||.+|.+...-|..|.++ 
T Consensus       361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-  439 (873)
T KOG4194|consen  361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-  439 (873)
T ss_pred             HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-
Confidence            9999999999999999986665   458899999999999999998777899999999999999999998888889888 


Q ss_pred             CcCcccccCCcCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCcc
Q 042884          514 TFNESSYEGNTFLCGLPLP-----------------ICRSPATTPEASIGNERDDNLI  554 (614)
Q Consensus       514 ~l~~~~~~~n~~~c~~~~~-----------------~c~~~~~~~~~~~~~~~~~~~~  554 (614)
                      .|+.+.+..-.++|||.+.                 .|+.|+...+.++...+.++..
T Consensus       440 ~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lv  497 (873)
T KOG4194|consen  440 ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLV  497 (873)
T ss_pred             hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhhce
Confidence            8999999999999999763                 4999998877776665555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-41  Score=332.59  Aligned_cols=204  Identities=25%  Similarity=0.281  Sum_probs=104.5

Q ss_pred             HhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccC
Q 042884          297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLL  376 (614)
Q Consensus       297 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  376 (614)
                      |.++++|+.|.+..|.|.......|-++.++++|+|+.|++...-..+++. ++.|+.|+|+.|.|..+.++++..+++|
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL  319 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKL  319 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheeecchhhhcccc
Confidence            333334444444444443333333334444444444444433212222222 3344444444444433333333334444


Q ss_pred             cEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc------cccCCccEEEcCCCcCCccC---CccccCCCcCCEEE
Q 042884          377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHI---PPQIGNLTRIQTLN  447 (614)
Q Consensus       377 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~  447 (614)
                      ++|+|++|+++ .+++.-|..+..|++|+|++|+++.      ..+++|++|||++|.++..+   ...|.++++|+.|+
T Consensus       320 ~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  320 KELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             eeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            44444444443 3333333333444444444443322      22344444444444444222   24577778888888


Q ss_pred             CcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcc
Q 042884          448 LSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG  503 (614)
Q Consensus       448 L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  503 (614)
                      +.+|++..+...+|.++++|+.|||.+|.|..+-|++|..+ .|+.|-+..-.+-|
T Consensus       399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC  453 (873)
T KOG4194|consen  399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC  453 (873)
T ss_pred             ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence            88888877777788888888888888888877778888777 77777776655554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1e-40  Score=313.73  Aligned_cols=439  Identities=26%  Similarity=0.348  Sum_probs=240.7

Q ss_pred             ccccccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCC
Q 042884            9 KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRG   88 (614)
Q Consensus         9 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~   88 (614)
                      .+.+.+.++..|.+|++++|++...    +++++.+..++.++.++|++. .+|..+....++..++.++|.+.. .++ 
T Consensus        59 ~l~~dl~nL~~l~vl~~~~n~l~~l----p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~-  131 (565)
T KOG0472|consen   59 VLREDLKNLACLTVLNVHDNKLSQL----PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPD-  131 (565)
T ss_pred             hccHhhhcccceeEEEeccchhhhC----CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCc-
Confidence            3444555555666666666665554    445555666666666666554 455556666666666666665542 332 


Q ss_pred             CCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCc
Q 042884           89 QGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPW  168 (614)
Q Consensus        89 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~  168 (614)
                       .++.+..|..++..+|.+.   .+|+.++. +.+|..+++.+|++.    ..|+. .-+++.|++||...|-++ .+|.
T Consensus       132 -~i~~~~~l~dl~~~~N~i~---slp~~~~~-~~~l~~l~~~~n~l~----~l~~~-~i~m~~L~~ld~~~N~L~-tlP~  200 (565)
T KOG0472|consen  132 -SIGRLLDLEDLDATNNQIS---SLPEDMVN-LSKLSKLDLEGNKLK----ALPEN-HIAMKRLKHLDCNSNLLE-TLPP  200 (565)
T ss_pred             -hHHHHhhhhhhhccccccc---cCchHHHH-HHHHHHhhccccchh----hCCHH-HHHHHHHHhcccchhhhh-cCCh
Confidence             3555566666666666655   55566555 556666666666665    45552 223666666666666655 5566


Q ss_pred             cccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCC
Q 042884          169 CVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTT  248 (614)
Q Consensus       169 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  248 (614)
                      .++.+.+|+.|++.+|++. .+|.  |..+..|++|+++.|.+. .++.+-...+.++.+||+++|++...         
T Consensus       201 ~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~---------  267 (565)
T KOG0472|consen  201 ELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEV---------  267 (565)
T ss_pred             hhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccC---------
Confidence            6666666666666666666 5663  566666666666666665 44545555666666666666665543         


Q ss_pred             CCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCC-----------
Q 042884          249 PNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPF-----------  317 (614)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-----------  317 (614)
                                          |..+.-+.+|++||+|+|.|+ .+|.. ++++ .|+.|-+.+|.++.+.           
T Consensus       268 --------------------Pde~clLrsL~rLDlSNN~is-~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~v  324 (565)
T KOG0472|consen  268 --------------------PDEICLLRSLERLDLSNNDIS-SLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEV  324 (565)
T ss_pred             --------------------chHHHHhhhhhhhcccCCccc-cCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHH
Confidence                                333333444444444444444 33333 3333 4444444444332110           


Q ss_pred             ---------------------------C---CCCCCCCccCEEEccCCccccCCChhhhhcCC--CccEEEccCCcCCCC
Q 042884          318 ---------------------------R---LPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP--NLISFNISMNALDGS  365 (614)
Q Consensus       318 ---------------------------~---~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~--~L~~L~L~~n~l~~~  365 (614)
                                                 +   .....+.+.+.|++++-+++ .+|.++|..-.  -....+++.|++. .
T Consensus       325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-e  402 (565)
T KOG0472|consen  325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-E  402 (565)
T ss_pred             HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-h
Confidence                                       0   01123446777777777777 77777776322  2667777777777 5


Q ss_pred             CccchhccccCc-EEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCC
Q 042884          366 IPSSFGNINLLK-ILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ  444 (614)
Q Consensus       366 ~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  444 (614)
                      +|..+..+..+. .+.+++|.+. .+|..+ ..+++|..|++++|.+                  . .+|..++++..|+
T Consensus       403 lPk~L~~lkelvT~l~lsnn~is-fv~~~l-~~l~kLt~L~L~NN~L------------------n-~LP~e~~~lv~Lq  461 (565)
T KOG0472|consen  403 LPKRLVELKELVTDLVLSNNKIS-FVPLEL-SQLQKLTFLDLSNNLL------------------N-DLPEEMGSLVRLQ  461 (565)
T ss_pred             hhhhhHHHHHHHHHHHhhcCccc-cchHHH-Hhhhcceeeecccchh------------------h-hcchhhhhhhhhh
Confidence            566666665543 3455555553 555444 4555566655555544                  3 3444455555555


Q ss_pred             EEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCc
Q 042884          445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNT  524 (614)
Q Consensus       445 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~  524 (614)
                      .|++++|++. ..|.....+..++.+-.++|++..+.|+.+.++.+|..||+.+|.++ .+|..++.+.+++++.+.|||
T Consensus       462 ~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  462 TLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             eecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCc
Confidence            5555555554 33444444444455555555555444444555555555555555555 233335555555555555555


Q ss_pred             CC
Q 042884          525 FL  526 (614)
Q Consensus       525 ~~  526 (614)
                      +.
T Consensus       540 fr  541 (565)
T KOG0472|consen  540 FR  541 (565)
T ss_pred             cC
Confidence            54

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9.2e-40  Score=307.24  Aligned_cols=453  Identities=24%  Similarity=0.293  Sum_probs=363.7

Q ss_pred             CCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCCCC
Q 042884           18 PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSL   97 (614)
Q Consensus        18 ~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L   97 (614)
                      ..++.|++++|.+...    .+.+..+..|.+|++++|++. ..|.+++.+..+..++.++|+.. .+|+  .+..+.+|
T Consensus        45 v~l~~lils~N~l~~l----~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~--~i~s~~~l  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVL----REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE--QIGSLISL  116 (565)
T ss_pred             cchhhhhhccCchhhc----cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH--HHhhhhhh
Confidence            4578899999999877    568889999999999999976 77889999999999999999876 4665  58889999


Q ss_pred             CEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCc
Q 042884           98 EHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLR  177 (614)
Q Consensus        98 ~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  177 (614)
                      +.+++++|.+.   .+++.++. +..|+.++..+|++.    ..|+ ++..+.+|..+++.+|+++ ..|...-+++.|+
T Consensus       117 ~~l~~s~n~~~---el~~~i~~-~~~l~dl~~~~N~i~----slp~-~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~  186 (565)
T KOG0472|consen  117 VKLDCSSNELK---ELPDSIGR-LLDLEDLDATNNQIS----SLPE-DMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLK  186 (565)
T ss_pred             hhhhcccccee---ecCchHHH-Hhhhhhhhccccccc----cCch-HHHHHHHHHHhhccccchh-hCCHHHHHHHHHH
Confidence            99999999988   78899998 899999999999998    6777 8999999999999999998 4555555599999


Q ss_pred             EEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeee
Q 042884          178 ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLL  257 (614)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  257 (614)
                      +||...|.+. .+|.. ++.+.+|+.|++..|++. ..|  .|.++..|+++.++.|.+.-..+                
T Consensus       187 ~ld~~~N~L~-tlP~~-lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpa----------------  245 (565)
T KOG0472|consen  187 HLDCNSNLLE-TLPPE-LGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPA----------------  245 (565)
T ss_pred             hcccchhhhh-cCChh-hcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHH----------------
Confidence            9999999998 89987 899999999999999987 555  68899999999999888754322                


Q ss_pred             ccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCcc
Q 042884          258 LSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNF  337 (614)
Q Consensus       258 l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i  337 (614)
                                  +...+++++.+||+.+|++. ++|+. ..-+++|++||+++|.|++. +.+++.+ .|+.|.+.+|.+
T Consensus       246 ------------e~~~~L~~l~vLDLRdNklk-e~Pde-~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  246 ------------EHLKHLNSLLVLDLRDNKLK-EVPDE-ICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ------------HHhcccccceeeeccccccc-cCchH-HHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCch
Confidence                        22347889999999999999 88988 45788999999999999985 4567888 999999999998


Q ss_pred             ccCCChhhhhcCC--CccEEE-------ccCCc---CC-CC-Ccc---chhccccCcEEEccCCccCCcCCchhhccCCC
Q 042884          338 QGHIPLEIGDILP--NLISFN-------ISMNA---LD-GS-IPS---SFGNINLLKILDLSNNQLTGEIPEHLAVGCVY  400 (614)
Q Consensus       338 ~~~~~~~~~~~l~--~L~~L~-------L~~n~---l~-~~-~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  400 (614)
                      . .+-.++...-+  -|++|.       ++.-.   -+ .. .+.   ....+.+.++|++++-+++ .+|+.+|....+
T Consensus       310 r-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~  387 (565)
T KOG0472|consen  310 R-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS  387 (565)
T ss_pred             H-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhh
Confidence            6 44433322100  122211       11110   00 00 111   2234567899999999998 999999876553


Q ss_pred             --CCEEEccCCcccccc--cC----CccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEc
Q 042884          401 --LDFLALSNNSLEGKV--LS----LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL  472 (614)
Q Consensus       401 --L~~L~l~~n~l~~~~--~~----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  472 (614)
                        ....+++.|++...+  ++    ..+.+.+++|.+. -+|..++.+++|..|+|++|.+. .+|..++.+..|++|++
T Consensus       388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Lnl  465 (565)
T KOG0472|consen  388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNL  465 (565)
T ss_pred             cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecc
Confidence              778999999987522  11    2344677777776 77888999999999999999998 55777888999999999


Q ss_pred             cCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          473 SYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       473 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      |.|++. .+|+....+..++.+-.++|++....|..+..+.++..+++..|....-.|
T Consensus       466 S~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp  522 (565)
T KOG0472|consen  466 SFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP  522 (565)
T ss_pred             cccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh
Confidence            999998 889988888888999899999997777768889999999999997766444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=5.7e-35  Score=301.90  Aligned_cols=470  Identities=25%  Similarity=0.307  Sum_probs=250.2

Q ss_pred             CccccccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccC
Q 042884            8 SKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVR   87 (614)
Q Consensus         8 ~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~   87 (614)
                      ..||..+..-..++.|+++.|-+...+   .+...+.-+|+.||+++|.+. ..|..+..+..|+++.++.|.+. ..| 
T Consensus        11 ~~ip~~i~~~~~~~~ln~~~N~~l~~p---l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp-   84 (1081)
T KOG0618|consen   11 ELIPEQILNNEALQILNLRRNSLLSRP---LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVP-   84 (1081)
T ss_pred             cccchhhccHHHHHhhhccccccccCc---hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCc-
Confidence            345555555555777777777655432   233444555777777777764 55666667777777777766654 345 


Q ss_pred             CCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccC
Q 042884           88 GQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLP  167 (614)
Q Consensus        88 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~  167 (614)
                       ....++++|++|.|.+|.+.   ..|..+.. +++|++|++++|.+.    .+|. -+..+..++.+..++|.....  
T Consensus        85 -~s~~~~~~l~~lnL~~n~l~---~lP~~~~~-lknl~~LdlS~N~f~----~~Pl-~i~~lt~~~~~~~s~N~~~~~--  152 (1081)
T KOG0618|consen   85 -SSCSNMRNLQYLNLKNNRLQ---SLPASISE-LKNLQYLDLSFNHFG----PIPL-VIEVLTAEEELAASNNEKIQR--  152 (1081)
T ss_pred             -hhhhhhhcchhheeccchhh---cCchhHHh-hhcccccccchhccC----CCch-hHHhhhHHHHHhhhcchhhhh--
Confidence             35677777777777777776   67777777 777777777777776    5555 455555555666665511111  


Q ss_pred             ccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCC
Q 042884          168 WCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLT  247 (614)
Q Consensus       168 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  247 (614)
                        ++... ++.+++..|.+.+.++.+ +..+..  .|+|.+|.+. ..   .+..+.+|+.+....|+++....      
T Consensus       153 --lg~~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l~~------  216 (1081)
T KOG0618|consen  153 --LGQTS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSELEI------  216 (1081)
T ss_pred             --hcccc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceEEe------
Confidence              11111 555555555555444443 333333  4555555543 11   23444445555555444433211      


Q ss_pred             CCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCcc
Q 042884          248 TPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL  327 (614)
Q Consensus       248 ~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L  327 (614)
                       ..++++.|+. ..+......+  .....+|+++++++|++. .+|.| ...+.+|+.+...+|.+..+ +..+..+.+|
T Consensus       217 -~g~~l~~L~a-~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~w-i~~~~nle~l~~n~N~l~~l-p~ri~~~~~L  289 (1081)
T KOG0618|consen  217 -SGPSLTALYA-DHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEW-IGACANLEALNANHNRLVAL-PLRISRITSL  289 (1081)
T ss_pred             -cCcchheeee-ccCcceeecc--ccccccceeeecchhhhh-cchHH-HHhcccceEecccchhHHhh-HHHHhhhhhH
Confidence             1113333333 1111111111  112234555555555555 44433 44555555555555555332 2233344455


Q ss_pred             CEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhcccc-CcEEEccCCccCCcCCchhhccCCCCCEEEc
Q 042884          328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINL-LKILDLSNNQLTGEIPEHLAVGCVYLDFLAL  406 (614)
Q Consensus       328 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l  406 (614)
                      +.|++..|.+. .+|..... +..|++|+|..|++....+..+.-... |+.|+.+.|.+. ..|..--.....|+.|++
T Consensus       290 ~~l~~~~nel~-yip~~le~-~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~Lyl  366 (1081)
T KOG0618|consen  290 VSLSAAYNELE-YIPPFLEG-LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYL  366 (1081)
T ss_pred             HHHHhhhhhhh-hCCCcccc-cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHH
Confidence            55555555554 44443332 455555555555555333333332222 455555555554 344222223444555555


Q ss_pred             cCCccccc------ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCC
Q 042884          407 SNNSLEGK------VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK  480 (614)
Q Consensus       407 ~~n~l~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  480 (614)
                      .+|.+++.      ....|+.|+|++|++.......+..++.|++|+||+|+++ .+|.....+..|++|...+|+|. .
T Consensus       367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~  444 (1081)
T KOG0618|consen  367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-S  444 (1081)
T ss_pred             hcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-e
Confidence            55555542      2345666666666666444445566666666666666666 33466666666666666666666 5


Q ss_pred             CcccccCCCCCCeEeccCCcCcc-cCCccccccCCcCcccccCCcC
Q 042884          481 IPHQLVELKTLEVFSLAFNNLSG-EIPEWKAQFATFNESSYEGNTF  525 (614)
Q Consensus       481 ~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~~~~~~n~~  525 (614)
                      .| .+..++.|+.+|++.|+++. .+|. ...+++|++++++||++
T Consensus       445 fP-e~~~l~qL~~lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  445 FP-ELAQLPQLKVLDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             ch-hhhhcCcceEEecccchhhhhhhhh-hCCCcccceeeccCCcc
Confidence            55 45666667777777776663 2333 33446666677777665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6.4e-34  Score=281.52  Aligned_cols=367  Identities=26%  Similarity=0.329  Sum_probs=267.8

Q ss_pred             CCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCC
Q 042884          121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTS  200 (614)
Q Consensus       121 l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  200 (614)
                      ++-.+-.|+++|.++|   ...+.++..+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+... ++.++.
T Consensus         6 LpFVrGvDfsgNDFsg---~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~   79 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSG---DRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPR   79 (1255)
T ss_pred             cceeecccccCCcCCC---CcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchh
Confidence            4555666777777775   444446777777888888777776 67778888888888888888776 55544 677788


Q ss_pred             CCEEEcccCcCcc-ccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCc
Q 042884          201 IEELHLSDNHFRI-PISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLE  279 (614)
Q Consensus       201 L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~  279 (614)
                      |+.+.+.+|.+.. .+| ..+..+..|.+||++.|++..                             .|..+..-+++-
T Consensus        80 LRsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL~E-----------------------------vP~~LE~AKn~i  129 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQLRE-----------------------------VPTNLEYAKNSI  129 (1255)
T ss_pred             hHHHhhhccccccCCCC-chhcccccceeeecchhhhhh-----------------------------cchhhhhhcCcE
Confidence            8888888777652 233 346677778888888777643                             345555667777


Q ss_pred             EEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccC
Q 042884          280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM  359 (614)
Q Consensus       280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~  359 (614)
                      +|+||+|+|. ++|..+|.++..|-.|+|++|++...+| ....+..|++|+|++|.+. ...-.-...+++|++|.+++
T Consensus       130 VLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  130 VLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSN  206 (1255)
T ss_pred             EEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhccc
Confidence            8888888887 7777777888888888888888776544 4566777888888888764 21111111256677777777


Q ss_pred             CcCC-CCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc-----ccCCccEEEcCCCcCCccC
Q 042884          360 NALD-GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK-----VLSLLSGLDLSCNKLIGHI  433 (614)
Q Consensus       360 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~L~~L~L~~n~l~~~~  433 (614)
                      .+-+ .-+|.++..+.+|+.+|+|.|.+. .+|+.++ .+++|+.|+|++|+++..     ...+|+.|+||.|+++ ..
T Consensus       207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~L  283 (1255)
T KOG0444|consen  207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VL  283 (1255)
T ss_pred             ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cc
Confidence            6543 346777788888888888888887 7777774 678888888888887753     2467888888888888 77


Q ss_pred             CccccCCCcCCEEECcCCcCC-CCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884          434 PPQIGNLTRIQTLNLSHNNLT-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF  512 (614)
Q Consensus       434 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  512 (614)
                      |.++..++.|+.|.+.+|+++ .-+|..++.+.+|+.+..++|.+. ..|+.+..+..|+.|.|+.|++. .+|+.+--+
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL  361 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLL  361 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhc
Confidence            888888888888888888775 336778888888888888888887 78888888888888888888887 566667777


Q ss_pred             CCcCcccccCCcCCCCCCC
Q 042884          513 ATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       513 ~~l~~~~~~~n~~~c~~~~  531 (614)
                      +.++.+++..||.+--.|.
T Consensus       362 ~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  362 PDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             CCcceeeccCCcCccCCCC
Confidence            8888888888887765443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.5e-33  Score=289.84  Aligned_cols=464  Identities=23%  Similarity=0.247  Sum_probs=352.2

Q ss_pred             ccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCC
Q 042884           13 SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFP   92 (614)
Q Consensus        13 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~   92 (614)
                      ++.+.-+|+.||+++|++...    .-.+..+++|+.|+++.|.+. ..|.+..++.+++++.+..|... ..|.  .+.
T Consensus        40 ~~~~~v~L~~l~lsnn~~~~f----p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~--~~~  111 (1081)
T KOG0618|consen   40 FVEKRVKLKSLDLSNNQISSF----PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA--SIS  111 (1081)
T ss_pred             HhhheeeeEEeeccccccccC----CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCch--hHH
Confidence            334445599999999999865    237888999999999999886 56788889999999988877664 5674  689


Q ss_pred             CCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccC
Q 042884           93 HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVAN  172 (614)
Q Consensus        93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  172 (614)
                      .+++|++|+++.|.+.   .+|..+.. ++.++.+..++|.-.      .  .++... .+.+++..|.+.+.++.....
T Consensus       112 ~lknl~~LdlS~N~f~---~~Pl~i~~-lt~~~~~~~s~N~~~------~--~lg~~~-ik~~~l~~n~l~~~~~~~i~~  178 (1081)
T KOG0618|consen  112 ELKNLQYLDLSFNHFG---PIPLVIEV-LTAEEELAASNNEKI------Q--RLGQTS-IKKLDLRLNVLGGSFLIDIYN  178 (1081)
T ss_pred             hhhcccccccchhccC---CCchhHHh-hhHHHHHhhhcchhh------h--hhcccc-chhhhhhhhhcccchhcchhh
Confidence            9999999999999998   78888888 899999999998222      1  233332 888999999999888888888


Q ss_pred             CCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcc
Q 042884          173 MTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ  252 (614)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  252 (614)
                      ++.  .|+|.+|.+. .+.   +.++++|+.+....|.+. .+.    ...++|+.|+.+.|.+.....     ...+.+
T Consensus       179 l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~-----~p~p~n  242 (1081)
T KOG0618|consen  179 LTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDV-----HPVPLN  242 (1081)
T ss_pred             hhe--eeecccchhh-hhh---hhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeecc-----cccccc
Confidence            777  7999999886 333   678899999999999886 222    244789999999998873322     222348


Q ss_pred             ceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEc
Q 042884          253 LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDV  332 (614)
Q Consensus       253 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  332 (614)
                      ++.++++ .+ ....+|+|+..+.+|+.++..+|.++ .+|.. .....+|+.|.+.+|.+..+++ ...+.++|++|+|
T Consensus       243 l~~~dis-~n-~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~r-i~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  243 LQYLDIS-HN-NLSNLPEWIGACANLEALNANHNRLV-ALPLR-ISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDL  317 (1081)
T ss_pred             ceeeecc-hh-hhhcchHHHHhcccceEecccchhHH-hhHHH-HhhhhhHHHHHhhhhhhhhCCC-cccccceeeeeee
Confidence            8899883 33 33567899999999999999999996 78887 4578899999999999998654 4566899999999


Q ss_pred             cCCccccCCChhhhhcCCC-ccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcc
Q 042884          333 SNNNFQGHIPLEIGDILPN-LISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL  411 (614)
Q Consensus       333 ~~n~i~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  411 (614)
                      ..|.+. .+|..++..... ++.|+.+.|++.......=...+.|+.|.+.+|.+++..-+ .+.+...|+.|+|++|++
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeeccccc
Confidence            999997 888877764444 77888888887743322223456788888888888754333 346788888888888877


Q ss_pred             cc------cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc
Q 042884          412 EG------KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  485 (614)
Q Consensus       412 ~~------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l  485 (614)
                      ..      ..+..|++|+||+|+++ .+|..+..++.|++|...+|.+... | .+..+++|+.+|+|.|+++...-..-
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccchhhhhhhhhh
Confidence            64      33567888899999988 6678888999999999999998844 4 78889999999999999875432222


Q ss_pred             cCCCCCCeEeccCCcCcccCCccccccCCcCcccccCC
Q 042884          486 VELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGN  523 (614)
Q Consensus       486 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n  523 (614)
                      ..-++|++||+++|.-.......+..++.+...++.-|
T Consensus       473 ~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            22378999999999854333334444554444444333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5e-33  Score=275.22  Aligned_cols=369  Identities=23%  Similarity=0.313  Sum_probs=293.1

Q ss_pred             cCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCC
Q 042884           14 MGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFP   92 (614)
Q Consensus        14 ~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~   92 (614)
                      .+-+|..+-.|+++|.+++..   +| ....++.++.|.|...++. .+|..++.+.+|++|.+.+|++++-.-   .+.
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~---FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG---ELs   75 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDR---FPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG---ELS   75 (1255)
T ss_pred             ccccceeecccccCCcCCCCc---CchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh---hhc
Confidence            356788899999999999654   77 8889999999999998875 789999999999999999999875332   588


Q ss_pred             CCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccC
Q 042884           93 HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVAN  172 (614)
Q Consensus        93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  172 (614)
                      .++.|+.+.+..|++.. ..+|..++. +..|..|||++|+++    +.|. .+..-+++-.|+|++|+|..+-..-|.+
T Consensus        76 ~Lp~LRsv~~R~N~LKn-sGiP~diF~-l~dLt~lDLShNqL~----EvP~-~LE~AKn~iVLNLS~N~IetIPn~lfin  148 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKN-SGIPTDIFR-LKDLTILDLSHNQLR----EVPT-NLEYAKNSIVLNLSYNNIETIPNSLFIN  148 (1255)
T ss_pred             cchhhHHHhhhcccccc-CCCCchhcc-cccceeeecchhhhh----hcch-hhhhhcCcEEEEcccCccccCCchHHHh
Confidence            89999999999998863 378889988 999999999999998    6777 7888889999999999998555566788


Q ss_pred             CCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcc
Q 042884          173 MTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ  252 (614)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  252 (614)
                      ++.|-.||||+|++. .+|+. +..+..|++|+|++|++. ......+..++.|++|.+++.+                 
T Consensus       149 LtDLLfLDLS~NrLe-~LPPQ-~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~Tq-----------------  208 (1255)
T KOG0444|consen  149 LTDLLFLDLSNNRLE-MLPPQ-IRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQ-----------------  208 (1255)
T ss_pred             hHhHhhhccccchhh-hcCHH-HHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhccccc-----------------
Confidence            999999999999998 88876 788999999999999876 3333445555666666666543                 


Q ss_pred             ceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEc
Q 042884          253 LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDV  332 (614)
Q Consensus       253 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  332 (614)
                                .....+|..+..+.+|..+|+|.|.+. .+|.. .-.+++|+.|+|++|+|+... .....-.+|++|++
T Consensus       209 ----------RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec-ly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNl  275 (1255)
T KOG0444|consen  209 ----------RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC-LYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNL  275 (1255)
T ss_pred             ----------chhhcCCCchhhhhhhhhccccccCCC-cchHH-HhhhhhhheeccCcCceeeee-ccHHHHhhhhhhcc
Confidence                      222456778888999999999999998 77877 567899999999999998643 23344568889999


Q ss_pred             cCCccccCCChhhhhcCCCccEEEccCCcCC-CCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcc
Q 042884          333 SNNNFQGHIPLEIGDILPNLISFNISMNALD-GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL  411 (614)
Q Consensus       333 ~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  411 (614)
                      |.|+++ .+|..++. ++.|+.|.+.+|+++ .-+|+.++.+.+|+.+..++|.+. -+|+.+ ..|..|+.|.|++|+ 
T Consensus       276 SrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl-cRC~kL~kL~L~~Nr-  350 (1255)
T KOG0444|consen  276 SRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL-CRCVKLQKLKLDHNR-  350 (1255)
T ss_pred             ccchhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh-hhhHHHHHhcccccc-
Confidence            999998 88988887 889999999999887 347888888999999999999887 778877 355555555544444 


Q ss_pred             cccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCc
Q 042884          412 EGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN  452 (614)
Q Consensus       412 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  452 (614)
                                       +. ..|+++.-++.|+.||+..|.
T Consensus       351 -----------------Li-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  351 -----------------LI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             -----------------ee-echhhhhhcCCcceeeccCCc
Confidence                             33 456666666777777776664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=1.1e-27  Score=225.87  Aligned_cols=412  Identities=18%  Similarity=0.224  Sum_probs=228.3

Q ss_pred             cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884            6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG   84 (614)
Q Consensus         6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~   84 (614)
                      +.+++|..+.  +.-..++|..|+|+.+    ++ +|+.+++|+.||||+|+|+...|+.|.++..+.++.+-+++.+..
T Consensus        57 GL~eVP~~LP--~~tveirLdqN~I~~i----P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   57 GLTEVPANLP--PETVEIRLDQNQISSI----PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             CcccCcccCC--CcceEEEeccCCcccC----ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            4567775544  5778999999999998    55 899999999999999999999999999999999999999777778


Q ss_pred             ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccc-
Q 042884           85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLR-  163 (614)
Q Consensus        85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~-  163 (614)
                      +|.+ +|+++..|+.|.+.-|.+.   .++......+++|..|.+..|.+.    .+...+|..+..++.+.+..|.+- 
T Consensus       131 l~k~-~F~gL~slqrLllNan~i~---Cir~~al~dL~~l~lLslyDn~~q----~i~~~tf~~l~~i~tlhlA~np~ic  202 (498)
T KOG4237|consen  131 LPKG-AFGGLSSLQRLLLNANHIN---CIRQDALRDLPSLSLLSLYDNKIQ----SICKGTFQGLAAIKTLHLAQNPFIC  202 (498)
T ss_pred             hhhh-HhhhHHHHHHHhcChhhhc---chhHHHHHHhhhcchhcccchhhh----hhccccccchhccchHhhhcCcccc
Confidence            8874 7999999999999999887   555555544999999999998887    677668888999999999888732 


Q ss_pred             -----------cccCccccCCCCCcEEEcccCCCCCccCCCCCCCC-CCCCEEEcccCcCccccCcccccCCCCccEEEc
Q 042884          164 -----------GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHL-TSIEELHLSDNHFRIPISLEPLFNHSRLKIFDA  231 (614)
Q Consensus       164 -----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l  231 (614)
                                 ...|..+++..-..-..+.++++. .++...|... ..+..=-.+.+......|...|..+++|+.+++
T Consensus       203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl  281 (498)
T KOG4237|consen  203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL  281 (498)
T ss_pred             ccccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence                       122333333333333344444443 2332212111 111110111111222334444555555555555


Q ss_pred             cCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCC
Q 042884          232 ENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVND  311 (614)
Q Consensus       232 ~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n  311 (614)
                      ++|.++.+..                            .+|.....+++|.|..|++. .+...+|.++..|+.|+|.+|
T Consensus       282 snN~i~~i~~----------------------------~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N  332 (498)
T KOG4237|consen  282 SNNKITRIED----------------------------GAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDN  332 (498)
T ss_pred             CCCccchhhh----------------------------hhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCC
Confidence            5555443322                            22333344444455555444 333344445555555555555


Q ss_pred             CCCCCCCCCCCCCCccCEEEccCCccccCCC-hhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCC--
Q 042884          312 SLAGPFRLPIHSHKRLRQLDVSNNNFQGHIP-LEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTG--  388 (614)
Q Consensus       312 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--  388 (614)
                      +|+.+.+.+|..+.+|.+|.+-.|.+--.-- .++..++.        ++...+..|  -+.-..++.+.+++..+..  
T Consensus       333 ~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr--------~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~  402 (498)
T KOG4237|consen  333 QITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR--------KKSVVGNPR--CQSPGFVRQIPISDVAFGDFR  402 (498)
T ss_pred             eeEEEecccccccceeeeeehccCcccCccchHHHHHHHh--------hCCCCCCCC--CCCCchhccccchhccccccc
Confidence            5555445555555555555544444321100 01111111        011011110  1112235555665554321  


Q ss_pred             -cCCchhh--------ccCCCCCEEEc-cCCccc---ccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCC
Q 042884          389 -EIPEHLA--------VGCVYLDFLAL-SNNSLE---GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG  455 (614)
Q Consensus       389 -~~~~~~~--------~~~~~L~~L~l-~~n~l~---~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  455 (614)
                       ..|++.-        +.++.+.+..= ++..+.   ...|....+|++.+|.++ .+|+.  .+.+| .+|+++|++..
T Consensus       403 c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~  478 (498)
T KOG4237|consen  403 CGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS  478 (498)
T ss_pred             cCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence             1122110        11222222211 111111   123444556666666666 34443  44555 66666666665


Q ss_pred             CCCcCCCCCCCCCEEEccCC
Q 042884          456 LIPSTFSNLKHIESLDLSYN  475 (614)
Q Consensus       456 ~~~~~~~~l~~L~~L~ls~N  475 (614)
                      .....|.++++|.+|-+++|
T Consensus       479 Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  479 LSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhcccccchhhhheeEEecC
Confidence            55566666666666666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=4.1e-27  Score=221.97  Aligned_cols=253  Identities=20%  Similarity=0.220  Sum_probs=219.5

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccC-CccccCCChhhhhcCCCccE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSN-NNFQGHIPLEIGDILPNLIS  354 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~  354 (614)
                      +.-..++|..|+|+ .+|...|+.+++|+.|+|++|.|+.+.+.+|.+++++.+|-+.+ |+|+ .+|...|.++..++.
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            35678999999998 88888899999999999999999999999999999998887766 8998 899999999999999


Q ss_pred             EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc---------------------
Q 042884          355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG---------------------  413 (614)
Q Consensus       355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~---------------------  413 (614)
                      |.+.-|++.-...+.|..+++|..|.+.+|.+. .++...|..+.+++.+.+..|.+..                     
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            999999999888999999999999999999998 8899888999999999988887421                     


Q ss_pred             --cc-----------------cCCccEE--Ec-CCCcCCccCC-ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEE
Q 042884          414 --KV-----------------LSLLSGL--DL-SCNKLIGHIP-PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL  470 (614)
Q Consensus       414 --~~-----------------~~~L~~L--~L-~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  470 (614)
                        ..                 ..+++.+  .+ +.+...++.| ..|..+++|++|+|++|+++.+.+.+|.++.++++|
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence              00                 0112222  12 2222222333 569999999999999999999999999999999999


Q ss_pred             EccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884          471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       471 ~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      +|..|+|..+....|.++..|+.|+|.+|+|++..|..|.....+..+.+-+|||.|+|.+
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence            9999999988888999999999999999999999999999999999999999999999976

>PLN03210 Resistant to P

Probab=99.90  E-value=3.8e-22  Score=230.68  Aligned_cols=338  Identities=21%  Similarity=0.228  Sum_probs=208.3

Q ss_pred             CCCCCCCCCEEeCcCcccCC----CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc
Q 042884           90 GFPHFKSLEHLNMERARIAP----NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS  165 (614)
Q Consensus        90 ~~~~l~~L~~L~l~~n~l~~----~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~  165 (614)
                      +|.++++|+.|.+..+....    ...+|..+....++|+.|.+.++.+.    .+|. .| ...+|+.|++.+|++. .
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~----~lP~-~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR----CMPS-NF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC----CCCC-cC-CccCCcEEECcCcccc-c
Confidence            46666666666665443210    01344444442235666666666655    4444 33 3456666667666665 4


Q ss_pred             cCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccccccccccc
Q 042884          166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYS  245 (614)
Q Consensus       166 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  245 (614)
                      ++..+..+++|+.|+|+++...+.+|.  +..+++|++|++++|.....+| ..+..+++|+.|++++|..         
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~---------  693 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCEN---------  693 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCC---------
Confidence            555566666667777666543335554  5566666666666665443444 3455666666666665432         


Q ss_pred             CCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCC
Q 042884          246 LTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHK  325 (614)
Q Consensus       246 ~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~  325 (614)
                                         ...+|..+ .+++|+.|++++|...+.+|.    ...+|++|++++|.+..++. .+ .++
T Consensus       694 -------------------L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~-~~-~l~  747 (1153)
T PLN03210        694 -------------------LEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPS-NL-RLE  747 (1153)
T ss_pred             -------------------cCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccc-cc-ccc
Confidence                               12233322 456667777776654444443    23466677777776655332 22 456


Q ss_pred             ccCEEEccCCccc------cCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCC
Q 042884          326 RLRQLDVSNNNFQ------GHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCV  399 (614)
Q Consensus       326 ~L~~L~l~~n~i~------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  399 (614)
                      +|+.|++.++...      ..++...+...++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+  .++
T Consensus       748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~  825 (1153)
T PLN03210        748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLE  825 (1153)
T ss_pred             ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--Ccc
Confidence            6666666553221      01122222335688888888887777788888888889999988875444777765  678


Q ss_pred             CCCEEEccCCcccc---cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCC-cCCCCCCcCCCCCCCCCEEEccCC
Q 042884          400 YLDFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN-NLTGLIPSTFSNLKHIESLDLSYN  475 (614)
Q Consensus       400 ~L~~L~l~~n~l~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~N  475 (614)
                      +|+.|++++|....   ..+.+++.|+|++|.++ .+|..+..+++|+.|++++| ++. .+|..+..+++|+.+++++|
T Consensus       826 sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        826 SLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             ccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence            88888888875432   23467888888888887 56777888888888888885 444 45666777888888888887


Q ss_pred             c
Q 042884          476 K  476 (614)
Q Consensus       476 ~  476 (614)
                      .
T Consensus       904 ~  904 (1153)
T PLN03210        904 G  904 (1153)
T ss_pred             c
Confidence            5

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=2e-21  Score=224.63  Aligned_cols=333  Identities=20%  Similarity=0.196  Sum_probs=222.4

Q ss_pred             hhcCCCCCCeEECcCCc------cccccCccccCCC-CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCc
Q 042884          145 GLCSLMHLQELYKVNND------LRGSLPWCVANMT-SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISL  217 (614)
Q Consensus       145 ~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  217 (614)
                      +|.++++|+.|.+..+.      +...+|..|..++ +|+.|++.++.+. .+|.. | ...+|++|++.+|.+. .++ 
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~-f-~~~~L~~L~L~~s~l~-~L~-  627 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSN-F-RPENLVKLQMQGSKLE-KLW-  627 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCc-C-CccCCcEEECcCcccc-ccc-
Confidence            45555555555554332      1122344444432 4555555555554 45543 2 3455555555555544 222 


Q ss_pred             ccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHH
Q 042884          218 EPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLL  297 (614)
Q Consensus       218 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  297 (614)
                      ..+..+++|+.++++++......+.    .....+|+.|++ .++.....+|..+..+++|+.|++++|...+.+|..+ 
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le~L~L-~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD----LSMATNLETLKL-SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc----cccCCcccEEEe-cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence            2234455555555554432222211    112235666666 4444445678888899999999999986555788753 


Q ss_pred             hcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCC-------CCCccch
Q 042884          298 ENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALD-------GSIPSSF  370 (614)
Q Consensus       298 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~  370 (614)
                       .+++|+.|++++|......+.   ...+|+.|++++|.+. .+|...  .+++|+.|.+.++...       ...+..+
T Consensus       702 -~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~  774 (1153)
T PLN03210        702 -NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMT  774 (1153)
T ss_pred             -CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhh
Confidence             789999999999875544332   2468999999999997 788655  3788999998875422       1222333


Q ss_pred             hccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-----cccCCccEEEcCCCcCCccCCccccCCCcCCE
Q 042884          371 GNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQT  445 (614)
Q Consensus       371 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  445 (614)
                      ...++|+.|++++|...+.+|..+ .++++|+.|++++|..-+     ..+++|+.|++++|.....+|..   .++|++
T Consensus       775 ~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~  850 (1153)
T PLN03210        775 MLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISD  850 (1153)
T ss_pred             hccccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCE
Confidence            446789999999998776888875 789999999999975322     23678999999998765455543   368999


Q ss_pred             EECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCc
Q 042884          446 LNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN  500 (614)
Q Consensus       446 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~  500 (614)
                      |+|++|.++ .+|..+..+++|+.|++++|.-...+|..+..++.|+.+++++|.
T Consensus       851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             eECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999999998 467789999999999999954434677778889999999999985

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2.1e-21  Score=208.34  Aligned_cols=265  Identities=25%  Similarity=0.277  Sum_probs=152.3

Q ss_pred             CCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEE
Q 042884          150 MHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF  229 (614)
Q Consensus       150 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  229 (614)
                      .+-..|+++++.++ .+|..+.  ++|+.|++.+|+++ .+|.    ..++|++|++++|.++ .+|.    ..++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccC----ccccccee
Confidence            34556677777666 4555553  35667777777666 5553    2456667777666665 3331    12455666


Q ss_pred             EccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEcc
Q 042884          230 DAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLV  309 (614)
Q Consensus       230 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~  309 (614)
                      ++++|.+...                             |.   ..++|+.|++++|++. .+|.    ..++|+.|+++
T Consensus       268 ~Ls~N~L~~L-----------------------------p~---lp~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS  310 (788)
T PRK15387        268 SIFSNPLTHL-----------------------------PA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVS  310 (788)
T ss_pred             eccCCchhhh-----------------------------hh---chhhcCEEECcCCccc-cccc----cccccceeECC
Confidence            6666554322                             11   1134566666666665 4443    23556666666


Q ss_pred             CCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCc
Q 042884          310 NDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE  389 (614)
Q Consensus       310 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  389 (614)
                      +|++.+++..    ..+|+.|++++|.++ .+|..    ..+|+.|+|++|++++ +|..   ..+|+.|++++|++. .
T Consensus       311 ~N~L~~Lp~l----p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~  376 (788)
T PRK15387        311 DNQLASLPAL----PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-S  376 (788)
T ss_pred             CCccccCCCC----cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-c
Confidence            6666654321    234666666666665 45531    2456666666666663 2322   245566666666665 4


Q ss_pred             CCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCE
Q 042884          390 IPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES  469 (614)
Q Consensus       390 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  469 (614)
                      +|..                      +.+|+.|++++|++++ +|..   .++|+.|++++|+++++ |..   ..+|+.
T Consensus       377 LP~l----------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI-P~l---~~~L~~  426 (788)
T PRK15387        377 LPAL----------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL-PML---PSGLLS  426 (788)
T ss_pred             Cccc----------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-Ccc---hhhhhh
Confidence            5431                      2345555566666553 3322   24677777777777653 432   235677


Q ss_pred             EEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccc
Q 042884          470 LDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWK  509 (614)
Q Consensus       470 L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  509 (614)
                      |++++|+|+ .+|..+..++.|+.|++++|++++..+..+
T Consensus       427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            777777777 567777777777777777777776655433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=6.3e-21  Score=204.76  Aligned_cols=265  Identities=27%  Similarity=0.321  Sum_probs=182.5

Q ss_pred             CCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCC
Q 042884          122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSI  201 (614)
Q Consensus       122 ~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  201 (614)
                      ..-..|+++.+.++    .+|+ .+.  ++|+.|++.+|+++ .+|.   .+++|++|++++|+++ .+|..    .++|
T Consensus       201 ~~~~~LdLs~~~Lt----sLP~-~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL  264 (788)
T PRK15387        201 NGNAVLNVGESGLT----TLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL----PPGL  264 (788)
T ss_pred             CCCcEEEcCCCCCC----cCCc-chh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc----cccc
Confidence            34668899999887    6776 454  47899999999998 4564   3578999999999998 67752    4688


Q ss_pred             CEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEE
Q 042884          202 EELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYV  281 (614)
Q Consensus       202 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L  281 (614)
                      +.|++++|.+. .++.    ....|+.|++++|++...                             |.   ..++|+.|
T Consensus       265 ~~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~L-----------------------------P~---~p~~L~~L  307 (788)
T PRK15387        265 LELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSL-----------------------------PV---LPPGLQEL  307 (788)
T ss_pred             ceeeccCCchh-hhhh----chhhcCEEECcCCccccc-----------------------------cc---ccccccee
Confidence            99999999887 3332    225688888888877532                             11   13578888


Q ss_pred             EccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCc
Q 042884          282 DLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA  361 (614)
Q Consensus       282 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~  361 (614)
                      ++++|++. .+|..    ...|+.|++++|.+.+++..    ..+|+.|++++|+++ .+|..    .++|+.|++++|+
T Consensus       308 dLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~  373 (788)
T PRK15387        308 SVSDNQLA-SLPAL----PSELCKLWAYNNQLTSLPTL----PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNR  373 (788)
T ss_pred             ECCCCccc-cCCCC----cccccccccccCcccccccc----ccccceEecCCCccC-CCCCC----Ccccceehhhccc
Confidence            88888887 45542    24577888888888765431    247889999999987 66642    4578888999998


Q ss_pred             CCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCC
Q 042884          362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLT  441 (614)
Q Consensus       362 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  441 (614)
                      ++. +|..   ..+|+.|++++|+++ .+|..                      ++.|+.|++++|+++. +|..   ..
T Consensus       374 L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l----------------------~s~L~~LdLS~N~Lss-IP~l---~~  422 (788)
T PRK15387        374 LTS-LPAL---PSGLKELIVSGNRLT-SLPVL----------------------PSELKELMVSGNRLTS-LPML---PS  422 (788)
T ss_pred             ccc-Cccc---ccccceEEecCCccc-CCCCc----------------------ccCCCEEEccCCcCCC-CCcc---hh
Confidence            884 4543   357889999999887 56642                      2234445555555542 3332   23


Q ss_pred             cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc
Q 042884          442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  485 (614)
Q Consensus       442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l  485 (614)
                      +|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            5666777777776 345666667777777777777776655554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.5e-18  Score=187.77  Aligned_cols=257  Identities=21%  Similarity=0.336  Sum_probs=153.5

Q ss_pred             CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCC
Q 042884           96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTS  175 (614)
Q Consensus        96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  175 (614)
                      +...|+++++.++   .+|..+   .++|+.|++++|.++    .+|. .+.  ++|+.|++++|+++ .+|..+.  .+
T Consensus       179 ~~~~L~L~~~~Lt---sLP~~I---p~~L~~L~Ls~N~Lt----sLP~-~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~  242 (754)
T PRK15370        179 NKTELRLKILGLT---TIPACI---PEQITTLILDNNELK----SLPE-NLQ--GNIKTLYANSNQLT-SIPATLP--DT  242 (754)
T ss_pred             CceEEEeCCCCcC---cCCccc---ccCCcEEEecCCCCC----cCCh-hhc--cCCCEEECCCCccc-cCChhhh--cc
Confidence            4566666666665   455543   245667777777666    4554 222  36677777777666 3454432  35


Q ss_pred             CcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884          176 LRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY  255 (614)
Q Consensus       176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  255 (614)
                      |+.|+|++|.+. .+|...   ..+|+.|++++|.+. .+|. .+.  .+|+.|++++|.+...                
T Consensus       243 L~~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt~L----------------  298 (754)
T PRK15370        243 IQEMELSINRIT-ELPERL---PSALQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIRTL----------------  298 (754)
T ss_pred             ccEEECcCCccC-cCChhH---hCCCCEEECcCCccC-cccc-ccC--CCCcEEECCCCccccC----------------
Confidence            677777777766 566532   245667777766665 3332 121  3566666666655432                


Q ss_pred             eeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCC
Q 042884          256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN  335 (614)
Q Consensus       256 L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  335 (614)
                                   |..+  .++|+.|++++|.+. .+|..+   .++|+.|++++|.++.++. .+  .++|+.|++++|
T Consensus       299 -------------P~~l--p~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N  356 (754)
T PRK15370        299 -------------PAHL--PSGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKN  356 (754)
T ss_pred             -------------cccc--hhhHHHHHhcCCccc-cCCccc---cccceeccccCCccccCCh-hh--cCcccEEECCCC
Confidence                         2111  135677777777776 455432   2567777787777776432 22  257888888888


Q ss_pred             ccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchh---hccCCCCCEEEccCCccc
Q 042884          336 NFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHL---AVGCVYLDFLALSNNSLE  412 (614)
Q Consensus       336 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~l~  412 (614)
                      .++ .+|..+   .++|+.|++++|.++. +|..+.  .+|+.|++++|++. .+|..+   ...++.+..+++.+|+++
T Consensus       357 ~L~-~LP~~l---p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        357 QIT-VLPETL---PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCC-cCChhh---cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            876 666544   3578888888888874 444443  36778888888887 666643   223455666666666665


Q ss_pred             ccccCCccEE
Q 042884          413 GKVLSLLSGL  422 (614)
Q Consensus       413 ~~~~~~L~~L  422 (614)
                      ...+..|+.|
T Consensus       429 ~~tl~~L~~L  438 (754)
T PRK15370        429 ERTIQNMQRL  438 (754)
T ss_pred             HHHHHHHHHh
Confidence            5444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=2.5e-18  Score=186.14  Aligned_cols=102  Identities=25%  Similarity=0.447  Sum_probs=50.3

Q ss_pred             CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEE
Q 042884          277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN  356 (614)
Q Consensus       277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~  356 (614)
                      +|+.|++++|.+. .+|..+.   .+|+.|++++|++..++. .+  .++|+.|++++|.++ .+|..+   .++|+.|+
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~LP~-~l--~~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~  310 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISCLPE-NL--PEELRYLSVYDNSIR-TLPAHL---PSGITHLN  310 (754)
T ss_pred             cccEEECcCCccC-cCChhHh---CCCCEEECcCCccCcccc-cc--CCCCcEEECCCCccc-cCcccc---hhhHHHHH
Confidence            4555555555555 4454321   345555555555554322 12  135566666666655 444332   13455566


Q ss_pred             ccCCcCCCCCccchhccccCcEEEccCCccCCcCCch
Q 042884          357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEH  393 (614)
Q Consensus       357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  393 (614)
                      +++|.++. +|..+  .++|+.|++++|.++ .+|..
T Consensus       311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~  343 (754)
T PRK15370        311 VQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPAS  343 (754)
T ss_pred             hcCCcccc-CCccc--cccceeccccCCccc-cCChh
Confidence            66666553 23222  245666666666665 45543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.1e-18  Score=175.86  Aligned_cols=90  Identities=23%  Similarity=0.297  Sum_probs=48.7

Q ss_pred             cccCCCcCCEEECcCCcCCCCCCcCC-----CCCCCCCEEEccCCcCCC----CCcccccCCCCCCeEeccCCcCccc--
Q 042884          436 QIGNLTRIQTLNLSHNNLTGLIPSTF-----SNLKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSLAFNNLSGE--  504 (614)
Q Consensus       436 ~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~--  504 (614)
                      .+..+++|++|++++|.+++.....+     ...+.|++|++++|.++.    .+.+.+..+++|+++++++|+++..  
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence            34455666666666666653211111     123567777777776651    2233444556677777777777632  


Q ss_pred             --CCcccccc-CCcCcccccCCcC
Q 042884          505 --IPEWKAQF-ATFNESSYEGNTF  525 (614)
Q Consensus       505 --~~~~~~~~-~~l~~~~~~~n~~  525 (614)
                        ....+..+ ..++.+++.+|||
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         296 QLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHhhcCCchhhcccCCCCC
Confidence              22223333 4566666666664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.7e-18  Score=174.49  Aligned_cols=246  Identities=25%  Similarity=0.266  Sum_probs=116.8

Q ss_pred             cceeeeccCCCCCCC----CCCccccCCCCCcEEEccCCCCCC------CCChhHHhcCCCccEEEccCCCCCCCCCCCC
Q 042884          252 QLQYLLLSSGYGDGA----TFPKFLYHQHDLEYVDLSHTKMNG------EFPNWLLENNTKLKTLFLVNDSLAGPFRLPI  321 (614)
Q Consensus       252 ~L~~L~l~~~~~~~~----~~p~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  321 (614)
                      .|+++++ .++....    .++..+...++++.++++++.+.+      .++. .+..+++|++|++++|.+....+..+
T Consensus        24 ~L~~l~l-~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          24 CLQVLRL-EGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             hccEEee-cCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCCCCChhHHHHH
Confidence            3666666 3333221    233344455556666666665541      0111 23445566666666666553333333


Q ss_pred             CCCC---ccCEEEccCCccccCCC----hhhhhcC-CCccEEEccCCcCCCC----CccchhccccCcEEEccCCccCCc
Q 042884          322 HSHK---RLRQLDVSNNNFQGHIP----LEIGDIL-PNLISFNISMNALDGS----IPSSFGNINLLKILDLSNNQLTGE  389 (614)
Q Consensus       322 ~~l~---~L~~L~l~~n~i~~~~~----~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~  389 (614)
                      ..+.   +|++|++++|++++...    ..+.. + ++|+.|++++|.+++.    .+..+..+++|++|++++|.+++.
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD-LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHh-CCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            2222   26666666665542111    11111 3 5566666666665522    223344455566666666665532


Q ss_pred             CCchh---hccCCCCCEEEccCCcccc----------cccCCccEEEcCCCcCCccCCcccc-----CCCcCCEEECcCC
Q 042884          390 IPEHL---AVGCVYLDFLALSNNSLEG----------KVLSLLSGLDLSCNKLIGHIPPQIG-----NLTRIQTLNLSHN  451 (614)
Q Consensus       390 ~~~~~---~~~~~~L~~L~l~~n~l~~----------~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n  451 (614)
                      ....+   +..+++|+.|++++|.+++          ...++|++|++++|.+++.....+.     ..+.|++|++++|
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence            21111   1233466666666665542          1234566666666665532221111     1255666666666


Q ss_pred             cCCCC----CCcCCCCCCCCCEEEccCCcCCCC----CcccccCC-CCCCeEeccCCc
Q 042884          452 NLTGL----IPSTFSNLKHIESLDLSYNKLNGK----IPHQLVEL-KTLEVFSLAFNN  500 (614)
Q Consensus       452 ~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~----~~~~l~~l-~~L~~L~l~~N~  500 (614)
                      .++..    ....+..+++|+.+++++|.+...    ....+... +.|+++++.+|+
T Consensus       261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            65411    112334445666666666666533    22223333 456666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=3.6e-18  Score=143.49  Aligned_cols=179  Identities=25%  Similarity=0.425  Sum_probs=102.1

Q ss_pred             CCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCE
Q 042884          324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDF  403 (614)
Q Consensus       324 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  403 (614)
                      +..++.|.+++|.++ .+|+.+.. +.+|+.|++++|+++ ..|..++.++.|+.|+++-|++. ..|..+ ..++.|+.
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALEV  106 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhhh
Confidence            344555556666665 55555555 556666666666665 44555666666666666666655 555554 33333333


Q ss_pred             EEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcc
Q 042884          404 LALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH  483 (614)
Q Consensus       404 L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  483 (614)
                      ||+.+|++..                 ...|+.|..+..|+.|+|++|.+. ..|...+.+++|+.|.+.+|.+. ..|.
T Consensus       107 ldltynnl~e-----------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk  167 (264)
T KOG0617|consen  107 LDLTYNNLNE-----------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK  167 (264)
T ss_pred             hhcccccccc-----------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence            3333333221                 134555666666677777777665 45556667777777777777666 5666


Q ss_pred             cccCCCCCCeEeccCCcCcccCCccccccCC---cCcccccCCcCCC
Q 042884          484 QLVELKTLEVFSLAFNNLSGEIPEWKAQFAT---FNESSYEGNTFLC  527 (614)
Q Consensus       484 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---l~~~~~~~n~~~c  527 (614)
                      .++.+..|+.|.+.+|+++-..|+ +..+.-   -+...++.|||.-
T Consensus       168 eig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             HHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence            666777777777777777644443 333321   1234456666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=1.4e-17  Score=139.93  Aligned_cols=168  Identities=27%  Similarity=0.272  Sum_probs=112.5

Q ss_pred             CCccccccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCcc
Q 042884            7 GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVV   86 (614)
Q Consensus         7 ~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~   86 (614)
                      +.++| .+-.+++.+.|.||+|.++.+    .|.+..+.+|+.|++++|++. .+|.+++.++.++.+.+.-|.+. ..|
T Consensus        23 f~~~~-gLf~~s~ITrLtLSHNKl~~v----ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lp   95 (264)
T KOG0617|consen   23 FEELP-GLFNMSNITRLTLSHNKLTVV----PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILP   95 (264)
T ss_pred             Hhhcc-cccchhhhhhhhcccCceeec----CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCc
Confidence            33444 345567788888888888877    567888888888888888876 56777777777777777666553 345


Q ss_pred             CCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc
Q 042884           87 RGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL  166 (614)
Q Consensus        87 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~  166 (614)
                      .  .|+.++.|+.||+.+|.+.. ..+|..++. ++.|+.|.++.|.+.    .+|+ .++++++|+.|.+..|.+- ..
T Consensus        96 r--gfgs~p~levldltynnl~e-~~lpgnff~-m~tlralyl~dndfe----~lp~-dvg~lt~lqil~lrdndll-~l  165 (264)
T KOG0617|consen   96 R--GFGSFPALEVLDLTYNNLNE-NSLPGNFFY-MTTLRALYLGDNDFE----ILPP-DVGKLTNLQILSLRDNDLL-SL  165 (264)
T ss_pred             c--ccCCCchhhhhhcccccccc-ccCCcchhH-HHHHHHHHhcCCCcc----cCCh-hhhhhcceeEEeeccCchh-hC
Confidence            3  57777777777777776653 245555555 666666666666664    3444 6666667777777666665 56


Q ss_pred             CccccCCCCCcEEEcccCCCCCccCC
Q 042884          167 PWCVANMTSLRILDVSSNQLTGSIAS  192 (614)
Q Consensus       167 ~~~~~~l~~L~~L~L~~n~l~~~~~~  192 (614)
                      |..++.++.|++|++.+|+++ .+|.
T Consensus       166 pkeig~lt~lrelhiqgnrl~-vlpp  190 (264)
T KOG0617|consen  166 PKEIGDLTRLRELHIQGNRLT-VLPP  190 (264)
T ss_pred             cHHHHHHHHHHHHhcccceee-ecCh
Confidence            666666666666666666666 5554

>PLN03150 hypothetical protein; Provisional

Probab=99.48  E-value=7e-14  Score=151.28  Aligned_cols=117  Identities=37%  Similarity=0.640  Sum_probs=106.6

Q ss_pred             CccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEecc
Q 042884          418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA  497 (614)
Q Consensus       418 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~  497 (614)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCcccccc-CCcCcccccCCcCCCCCCC-CCC
Q 042884          498 FNNLSGEIPEWKAQF-ATFNESSYEGNTFLCGLPL-PIC  534 (614)
Q Consensus       498 ~N~l~~~~~~~~~~~-~~l~~~~~~~n~~~c~~~~-~~c  534 (614)
                      +|++++.+|..+... ..+..+++.+|+..|++|. ..|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            999999999876653 4566788999999998764 356

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=2.3e-13  Score=135.52  Aligned_cols=188  Identities=31%  Similarity=0.461  Sum_probs=143.1

Q ss_pred             CCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCE
Q 042884          324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDF  403 (614)
Q Consensus       324 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  403 (614)
                      +.--...|++.|++. .+|..+.. +..|+.+.|..|.+. .+|..+..+..|+++|++.|+++ .+|..++  .--|+.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV  147 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence            344456777888887 77777766 677888888888777 66777888888888888888887 7777764  234777


Q ss_pred             EEccCCccccc-----ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCC
Q 042884          404 LALSNNSLEGK-----VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN  478 (614)
Q Consensus       404 L~l~~n~l~~~-----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  478 (614)
                      |-+++|+++..     ....|..||.+.|++. ..|..++++.+|+.|++..|++...+ ..+..| .|..||+|+|+++
T Consensus       148 li~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp-~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP-EELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             EEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC-HHHhCC-ceeeeecccCcee
Confidence            88888877642     3567888899999988 66778999999999999999998654 445555 5899999999999


Q ss_pred             CCCcccccCCCCCCeEeccCCcCcccCCccccccC---CcCcccccC
Q 042884          479 GKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA---TFNESSYEG  522 (614)
Q Consensus       479 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~---~l~~~~~~~  522 (614)
                       .+|-.|..|..|++|-|.+|+++ ..|+.++...   -+++++.+.
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA  269 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQA  269 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchh
Confidence             89999999999999999999999 4555444322   344444433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=3.7e-13  Score=134.02  Aligned_cols=195  Identities=28%  Similarity=0.441  Sum_probs=153.6

Q ss_pred             CCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884          275 QHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS  354 (614)
Q Consensus       275 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~  354 (614)
                      +..-...|++.|++. ++|.. +..+..|+.+.+..|.+.. .+.++..+..|+.+|++.|+++ .+|..++. ++ |+.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~-~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lp-Lkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEE-ACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCD-LP-LKV  147 (722)
T ss_pred             ccchhhhhccccccc-cCchH-HHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhc-Cc-cee
Confidence            445567899999998 78877 5677788889999998886 4567888999999999999998 88988886 44 999


Q ss_pred             EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCC
Q 042884          355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP  434 (614)
Q Consensus       355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~  434 (614)
                      |.+++|+++ .+|..++....|..||.+.|.+. .+|..+ .++.+|+.|                  .+..|++. ..|
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql-~~l~slr~l------------------~vrRn~l~-~lp  205 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL-GYLTSLRDL------------------NVRRNHLE-DLP  205 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHh-hhHHHHHHH------------------HHhhhhhh-hCC
Confidence            999999998 66777888899999999999998 788876 345555444                  44455555 556


Q ss_pred             ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC---CCCCeEeccCCc
Q 042884          435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL---KTLEVFSLAFNN  500 (614)
Q Consensus       435 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l---~~L~~L~l~~N~  500 (614)
                      ..+..+ .|..||+|.|+++ .+|-.|..++.|++|-|.+|.++ ..|..+...   .=.++|+..-++
T Consensus       206 ~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  206 EELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            666644 5899999999998 67889999999999999999998 667665432   234677777774

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=9.8e-12  Score=120.36  Aligned_cols=207  Identities=28%  Similarity=0.333  Sum_probs=152.9

Q ss_pred             hcCCCccEEEccCCCCCCCCC-CCCCCCCccCEEEccCCccccCCC-hhhhhcCCCccEEEccCCcCCCCCcc-chhccc
Q 042884          298 ENNTKLKTLFLVNDSLAGPFR-LPIHSHKRLRQLDVSNNNFQGHIP-LEIGDILPNLISFNISMNALDGSIPS-SFGNIN  374 (614)
Q Consensus       298 ~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~  374 (614)
                      +++.+|+++.|++..+..... .....+++++.||+++|-+....+ ..+...+|+|+.|+|+.|++...... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            467789999999988875433 345678999999999998873322 24455699999999999998633222 123578


Q ss_pred             cCcEEEccCCccCCcCCchhhccCCCCCEEEccCCc-cc-----ccccCCccEEEcCCCcCCccC-CccccCCCcCCEEE
Q 042884          375 LLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS-LE-----GKVLSLLSGLDLSCNKLIGHI-PPQIGNLTRIQTLN  447 (614)
Q Consensus       375 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~-----~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  447 (614)
                      .|+.|.++.|.++-.--..+...+++|+.|++..|. +.     ...+..|++|||++|++.... ....+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            899999999998743344556789999999999994 22     245788999999999987432 13467889999999


Q ss_pred             CcCCcCCCCCCcC------CCCCCCCCEEEccCCcCCCCC-cccccCCCCCCeEeccCCcCccc
Q 042884          448 LSHNNLTGLIPST------FSNLKHIESLDLSYNKLNGKI-PHQLVELKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       448 L~~n~l~~~~~~~------~~~l~~L~~L~ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~  504 (614)
                      ++.+.+..+.-..      ...+++|+.|+++.|+|...- -..+..+++|+.|.+..|.++..
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            9999887553222      356789999999999996321 12355577888899999998743

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=7.5e-11  Score=122.28  Aligned_cols=198  Identities=33%  Similarity=0.526  Sum_probs=123.0

Q ss_pred             EEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCC-CccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884          280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS  358 (614)
Q Consensus       280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~  358 (614)
                      .++++.+.+......  ....+.++.|++.+|.+..+.+. ...+ ++|+.|++++|.+. .+|..... +++|+.|+++
T Consensus        97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLS  171 (394)
T ss_pred             eeeccccccccCchh--hhcccceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhc-cccccccccC
Confidence            567777766423322  33456777888888877765443 2233 27888888888876 66544544 7788888888


Q ss_pred             CCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCcccc
Q 042884          359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIG  438 (614)
Q Consensus       359 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~  438 (614)
                      +|+++ .+|......++|+.|++++|+++ .+|..+ ..                  +..|+++.+++|++. ..+..+.
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~-~~------------------~~~L~~l~~~~N~~~-~~~~~~~  229 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI-EL------------------LSALEELDLSNNSII-ELLSSLS  229 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhh-hh------------------hhhhhhhhhcCCcce-ecchhhh
Confidence            88877 33444446777888888888877 666653 12                  233444444544322 3344566


Q ss_pred             CCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCc
Q 042884          439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE  507 (614)
Q Consensus       439 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  507 (614)
                      .+.++..+.+.+|++... +..++.+++++.|++++|+++.+.+  +..+.+++.|++++|.+....|.
T Consensus       230 ~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         230 NLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            666666666767766532 4556666667777777777764333  66667777777777776655444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=3.8e-12  Score=119.90  Aligned_cols=97  Identities=16%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             CCCCCCCCCEEeCcCcccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCch---------hhcCCCCCCeEECc
Q 042884           90 GFPHFKSLEHLNMERARIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDR---------GLCSLMHLQELYKV  158 (614)
Q Consensus        90 ~~~~l~~L~~L~l~~n~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~---------~~~~l~~L~~L~L~  158 (614)
                      ++..+++|++++||+|.+..  ...+-+.+.. +..|+.|.|.+|.+..........         ....-++|+++..+
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s-~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSS-CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHh-ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            45566788888888887753  1111222333 777888888887775322121111         12233455666665


Q ss_pred             CCcccccc----CccccCCCCCcEEEcccCCCC
Q 042884          159 NNDLRGSL----PWCVANMTSLRILDVSSNQLT  187 (614)
Q Consensus       159 ~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~  187 (614)
                      +|++....    ...|...+.|+.+.++.|.|.
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~  198 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIR  198 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEeccccc
Confidence            55554321    223444455555555555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=3.6e-11  Score=116.52  Aligned_cols=221  Identities=24%  Similarity=0.178  Sum_probs=149.0

Q ss_pred             CccccccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCcc--chHHHhhccCCcEEeccCccccCCc
Q 042884            8 SKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHIS--LLQSIASLFPSLKNLSMSYCEVNGV   85 (614)
Q Consensus         8 ~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~--~~~~~~~l~~l~~l~l~~~~~~~~~   85 (614)
                      .++...=.++.+|+.+.|.++.+...+..  .....|++++.||||.|-+..-  +......+++|+.|.+++|.+....
T Consensus       111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~  188 (505)
T KOG3207|consen  111 DKIAAKQSNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI  188 (505)
T ss_pred             HHHHHHhhhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence            34444446788899999999887755311  2567789999999999977642  2234567889999999999876433


Q ss_pred             cCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc
Q 042884           86 VRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS  165 (614)
Q Consensus        86 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~  165 (614)
                      .. ..-..+++|+.|.++.|.++.  .-...+...+|+|+.|+|.+|...    .+.......+..|+.|||++|.+.+ 
T Consensus       189 ~s-~~~~~l~~lK~L~l~~CGls~--k~V~~~~~~fPsl~~L~L~~N~~~----~~~~~~~~i~~~L~~LdLs~N~li~-  260 (505)
T KOG3207|consen  189 SS-NTTLLLSHLKQLVLNSCGLSW--KDVQWILLTFPSLEVLYLEANEII----LIKATSTKILQTLQELDLSNNNLID-  260 (505)
T ss_pred             cc-cchhhhhhhheEEeccCCCCH--HHHHHHHHhCCcHHHhhhhccccc----ceecchhhhhhHHhhccccCCcccc-
Confidence            22 223367888999999998874  222333333899999999888422    2222244567788999999988763 


Q ss_pred             cC--ccccCCCCCcEEEcccCCCCCccCCCC------CCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccc
Q 042884          166 LP--WCVANMTSLRILDVSSNQLTGSIASSP------LAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELN  237 (614)
Q Consensus       166 ~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  237 (614)
                      .+  .....++.|+.|+++.+.+. .+....      ...+++|+.|++..|++..--....+..+++|+.|.+..|.+.
T Consensus       261 ~~~~~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  261 FDQGYKVGTLPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccccccccccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            33  34567888888999888887 433211      2567888999999888752222334556667777777777765


Q ss_pred             cc
Q 042884          238 AE  239 (614)
Q Consensus       238 ~~  239 (614)
                      ..
T Consensus       340 ~e  341 (505)
T KOG3207|consen  340 KE  341 (505)
T ss_pred             cc
Confidence            44

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=1.9e-11  Score=112.53  Aligned_cols=130  Identities=31%  Similarity=0.334  Sum_probs=75.5

Q ss_pred             CCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcC
Q 042884          350 PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKL  429 (614)
Q Consensus       350 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l  429 (614)
                      ..|+++||++|.|+ .+.++..-.+.++.|+++.|.+. .+.. +                   ..+++|+.||||+|.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L-------------------a~L~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L-------------------AELPQLQLLDLSGNLL  341 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h-------------------hhcccceEeecccchh
Confidence            34555555555554 33344444555555555555554 2222 1                   1245555566666655


Q ss_pred             CccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCc-ccccCCCCCCeEeccCCcCccc
Q 042884          430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       430 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~  504 (614)
                      + .+.++-..+.+.+.|.|+.|.+...  ..++.+-+|..||+++|+|..... ..++++|.|+.+.|.+|++.+.
T Consensus       342 s-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  342 A-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             H-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            5 3334445566777777777777544  456667777777777777763221 3466777777777777777743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=1.9e-10  Score=102.02  Aligned_cols=107  Identities=25%  Similarity=0.346  Sum_probs=28.4

Q ss_pred             CCCCcEEEccCCCCCCCCChhHHh-cCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          275 QHDLEYVDLSHTKMNGEFPNWLLE-NNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       275 l~~L~~L~Ls~n~i~~~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      ...+++|+|.+|.|+ .+..  ++ .+.+|+.|++++|.|+.+.  .+..++.|+.|++++|+|+ .++..+...+++|+
T Consensus        18 ~~~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             -------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             ccccccccccccccc-cccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            345566666666665 3322  22 3456666666666666533  3445566666666666665 44443333356666


Q ss_pred             EEEccCCcCCCC-CccchhccccCcEEEccCCccC
Q 042884          354 SFNISMNALDGS-IPSSFGNINLLKILDLSNNQLT  387 (614)
Q Consensus       354 ~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~  387 (614)
                      +|++++|+|... .-..+..+++|+.|++.+|.+.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            666666665432 1134445555666666666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=4.5e-11  Score=105.95  Aligned_cols=131  Identities=24%  Similarity=0.348  Sum_probs=50.2

Q ss_pred             CCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccc
Q 042884           91 FPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV  170 (614)
Q Consensus        91 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  170 (614)
                      +.+..++++|+|.+|.++   .+ +.++..+.+|+.|++++|.++    .+.  ++..+++|++|++++|+|+.. .+.+
T Consensus        15 ~~n~~~~~~L~L~~n~I~---~I-e~L~~~l~~L~~L~Ls~N~I~----~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l   83 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS---TI-ENLGATLDKLEVLDLSNNQIT----KLE--GLPGLPRLKTLDLSNNRISSI-SEGL   83 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS--S------T--T----TT--EEE--SS---S--CHHH
T ss_pred             cccccccccccccccccc---cc-cchhhhhcCCCEEECCCCCCc----ccc--CccChhhhhhcccCCCCCCcc-ccch
Confidence            555667889999999886   33 445533788999999999987    444  477889999999999999854 3444


Q ss_pred             -cCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccC--cccccCCCCccEEEcc
Q 042884          171 -ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPIS--LEPLFNHSRLKIFDAE  232 (614)
Q Consensus       171 -~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~l~  232 (614)
                       ..+++|++|++++|+|.+.-.-..+..+++|+.|++.+|++...-.  ...+..+++|+.||-.
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence             4688999999999998733222446788999999999998862211  1225577888888764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=5.6e-11  Score=109.53  Aligned_cols=130  Identities=24%  Similarity=0.274  Sum_probs=99.4

Q ss_pred             CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      ....|+++|||+|.|+ .+... ..-.|.++.|++++|.+..+..  +..+++|+.||+++|.++ .+..+-.. +-+.+
T Consensus       282 TWq~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~K-LGNIK  355 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLA-ECVGWHLK-LGNIK  355 (490)
T ss_pred             hHhhhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhH-hhhhhHhh-hcCEe
Confidence            4467999999999998 66655 5678999999999999987554  777899999999999997 66665555 88999


Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCc-hhhccCCCCCEEEccCCccc
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE-HLAVGCVYLDFLALSNNSLE  412 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~  412 (614)
                      +|.|+.|.+...  ..+..+-+|..||+++|+|. .+.+ .-.+.++.|+.+.+.+|++.
T Consensus       356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeehhhhhHhhh--hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence            999999988633  45778889999999999986 3322 12245566666666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=2.9e-10  Score=117.87  Aligned_cols=194  Identities=36%  Similarity=0.516  Sum_probs=135.1

Q ss_pred             EEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCC-CccEEEccCCcCCCCCccchhccccCcEEEccC
Q 042884          305 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSN  383 (614)
Q Consensus       305 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  383 (614)
                      .+....+.+... ......++.++.|++.+|.++ .++..... +. +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            455555555321 222333456677777777776 56555543 42 6777777777666 3334556666677777777


Q ss_pred             CccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCC
Q 042884          384 NQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN  463 (614)
Q Consensus       384 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  463 (614)
                      |++. .+|....                   .++.|+.|++++|++. .+|........|++|.+++|.+. ..+..+..
T Consensus       173 N~l~-~l~~~~~-------------------~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~  230 (394)
T COG4886         173 NDLS-DLPKLLS-------------------NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN  230 (394)
T ss_pred             chhh-hhhhhhh-------------------hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh
Confidence            7666 5554321                   3567777888888887 55555556677999999999644 34577888


Q ss_pred             CCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCC
Q 042884          464 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC  527 (614)
Q Consensus       464 l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c  527 (614)
                      +..+..+.+++|++. ..+..+..++.++.|++++|.++...+  +.....++.+++++|...-
T Consensus       231 ~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         231 LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             cccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence            999999999999998 447778889999999999999995433  7788899999999986643

>PLN03150 hypothetical protein; Provisional

Probab=98.99  E-value=1e-09  Score=119.17  Aligned_cols=92  Identities=33%  Similarity=0.539  Sum_probs=81.2

Q ss_pred             cCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC-CCCCeE
Q 042884          416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVF  494 (614)
Q Consensus       416 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l-~~L~~L  494 (614)
                      +++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+... .++..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            4677788888888888999999999999999999999999999999999999999999999999999988764 467889


Q ss_pred             eccCCcCcccCCc
Q 042884          495 SLAFNNLSGEIPE  507 (614)
Q Consensus       495 ~l~~N~l~~~~~~  507 (614)
                      ++.+|+..|..|.
T Consensus       521 ~~~~N~~lc~~p~  533 (623)
T PLN03150        521 NFTDNAGLCGIPG  533 (623)
T ss_pred             EecCCccccCCCC
Confidence            9999987765443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=3.5e-10  Score=82.34  Aligned_cols=59  Identities=41%  Similarity=0.638  Sum_probs=33.1

Q ss_pred             cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCc
Q 042884          442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN  500 (614)
Q Consensus       442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~  500 (614)
                      +|++|++++|+++.+.++.|.++++|++|++++|.++.+.|+.|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555555555555555555555555555555555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=6.7e-10  Score=80.84  Aligned_cols=61  Identities=49%  Similarity=0.665  Sum_probs=57.1

Q ss_pred             CCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcC
Q 042884          417 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL  477 (614)
Q Consensus       417 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l  477 (614)
                      ++|++|++++|+++...+++|.++++|++|++++|+++.+.++.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999988889999999999999999999999999999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.93  E-value=1.2e-10  Score=120.92  Aligned_cols=220  Identities=27%  Similarity=0.332  Sum_probs=136.2

Q ss_pred             CCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCC
Q 042884          121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTS  200 (614)
Q Consensus       121 l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  200 (614)
                      +..++.+.+..|.+.    .+.. .+..+.+|+.|++.+|+|..+ ...+..+++|++|++++|.|. .+..  +..++.
T Consensus        71 l~~l~~l~l~~n~i~----~~~~-~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~  141 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA----KILN-HLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTL  141 (414)
T ss_pred             hHhHHhhccchhhhh----hhhc-ccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc--hhhccc
Confidence            566666777777765    3222 477788888888888888743 333677888888888888887 4544  567777


Q ss_pred             CCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcE
Q 042884          201 IEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEY  280 (614)
Q Consensus       201 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~  280 (614)
                      |+.|++++|.+. .+  ..+..+..|+.+++++|++......                           . ...+.+++.
T Consensus       142 L~~L~l~~N~i~-~~--~~~~~l~~L~~l~l~~n~i~~ie~~---------------------------~-~~~~~~l~~  190 (414)
T KOG0531|consen  142 LKELNLSGNLIS-DI--SGLESLKSLKLLDLSYNRIVDIEND---------------------------E-LSELISLEE  190 (414)
T ss_pred             hhhheeccCcch-hc--cCCccchhhhcccCCcchhhhhhhh---------------------------h-hhhccchHH
Confidence            888888888876 22  3455577888888888877654220                           0 235567777


Q ss_pred             EEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCC
Q 042884          281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMN  360 (614)
Q Consensus       281 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n  360 (614)
                      +++.+|.+. .+..  +..+..+..+++..|.++.+.+.....+..|+.+++++|++. .++..+- .+..+..|++.+|
T Consensus       191 l~l~~n~i~-~i~~--~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~-~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  191 LDLGGNSIR-EIEG--LDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS-RSPEGLE-NLKNLPVLDLSSN  265 (414)
T ss_pred             HhccCCchh-cccc--hHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc-ccccccc-ccccccccchhhc
Confidence            777777776 2222  233444555567777766543322111112777777777776 4332222 2566777777777


Q ss_pred             cCCCCCccchhccccCcEEEccCCccC
Q 042884          361 ALDGSIPSSFGNINLLKILDLSNNQLT  387 (614)
Q Consensus       361 ~l~~~~~~~~~~l~~L~~L~l~~n~l~  387 (614)
                      ++...  ..+...+.+..+....|.+.
T Consensus       266 ~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  266 RISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccccc--ccccccchHHHhccCcchhc
Confidence            76633  22344455556666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=7.7e-11  Score=111.22  Aligned_cols=211  Identities=18%  Similarity=0.179  Sum_probs=131.2

Q ss_pred             ccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCC
Q 042884           13 SMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGF   91 (614)
Q Consensus        13 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~   91 (614)
                      ++...|+|++||||.|.|.......+. -+.++++|++|.|.+|.+...--..++.-  |..+-  .+         ...
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a--l~~l~--~~---------kk~  153 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA--LFELA--VN---------KKA  153 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH--HHHHH--HH---------hcc
Confidence            444455666666666665543221122 34556666666666665532211111110  00000  00         123


Q ss_pred             CCCCCCCEEeCcCcccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc----
Q 042884           92 PHFKSLEHLNMERARIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS----  165 (614)
Q Consensus        92 ~~l~~L~~L~l~~n~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~----  165 (614)
                      +.-+.|+++...+|++..  .+.+...+.. .+.|+.+.+..|.|......+...++..+++|+.|||.+|-++..    
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~-~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQS-HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHh-ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence            445789999999998752  2333344445 789999999999887766555556788999999999999988753    


Q ss_pred             cCccccCCCCCcEEEcccCCCCCc----cCCCCCCCCCCCCEEEcccCcCccc---cCcccccCCCCccEEEccCCccc
Q 042884          166 LPWCVANMTSLRILDVSSNQLTGS----IASSPLAHLTSIEELHLSDNHFRIP---ISLEPLFNHSRLKIFDAENNELN  237 (614)
Q Consensus       166 ~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~~~  237 (614)
                      +...++.+++|++|++++|.+...    +-...-...+.|++|.+.+|.++..   .........+.|+.|++++|++.
T Consensus       233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            345567788999999999988621    1111123478899999999988721   11123445788999999999883

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=3.8e-10  Score=117.10  Aligned_cols=204  Identities=25%  Similarity=0.236  Sum_probs=118.7

Q ss_pred             CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      .+++|++|++++|.|...-+   +..++.|+.|++++|.|+.+.  .+..+..|+.+++++|++. .++......+.+++
T Consensus       116 ~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~  189 (414)
T KOG0531|consen  116 SLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYNRIV-DIENDELSELISLE  189 (414)
T ss_pred             hhhcchheeccccccccccc---hhhccchhhheeccCcchhcc--CCccchhhhcccCCcchhh-hhhhhhhhhccchH
Confidence            45666777777776663322   445556777777777776533  2344667777777777776 44331012356677


Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccC
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHI  433 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~  433 (614)
                      .+++.+|.+...  ..+..+..+..+++..|.++..-+...   +..                ..|+.+++++|++. ..
T Consensus       190 ~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~---~~~----------------~~L~~l~l~~n~i~-~~  247 (414)
T KOG0531|consen  190 ELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNE---LVM----------------LHLRELYLSGNRIS-RS  247 (414)
T ss_pred             HHhccCCchhcc--cchHHHHHHHHhhcccccceeccCccc---chh----------------HHHHHHhcccCccc-cc
Confidence            777777766532  233444445555666666551111110   000                02566666666665 33


Q ss_pred             CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC---CCccc-ccCCCCCCeEeccCCcCcccCCc
Q 042884          434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG---KIPHQ-LVELKTLEVFSLAFNNLSGEIPE  507 (614)
Q Consensus       434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~---~~~~~-l~~l~~L~~L~l~~N~l~~~~~~  507 (614)
                      +..+..+..+..|++.+|++...  ..+...+.+..+..+.|.+..   ..... ....+.++.+.+.+|+.....+.
T Consensus       248 ~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  248 PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence            24566777888888888887655  445566777777777777652   12221 44567788888888888765543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=1e-08  Score=113.86  Aligned_cols=129  Identities=22%  Similarity=0.263  Sum_probs=86.6

Q ss_pred             CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCc--CCCCCCCcCchhhcCCCCCCeEECcCCccccccCcccc
Q 042884           94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFT--LSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVA  171 (614)
Q Consensus        94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~--l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  171 (614)
                      ....+...+.+|.+.   .++....  ++.|++|-+..|.  +.    .++...|..++.|+.|||++|.=-+.+|+.++
T Consensus       522 ~~~~rr~s~~~~~~~---~~~~~~~--~~~L~tLll~~n~~~l~----~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~  592 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIE---HIAGSSE--NPKLRTLLLQRNSDWLL----EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG  592 (889)
T ss_pred             hhheeEEEEeccchh---hccCCCC--CCccceEEEeecchhhh----hcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence            345566666666654   2333222  4577888777774  33    45554577788888888887766667888888


Q ss_pred             CCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCC
Q 042884          172 NMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENN  234 (614)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n  234 (614)
                      .+.+||+|++++..+. .+|.+ ++++..|.+|++..+.....+ ......+++|++|.+...
T Consensus       593 ~Li~LryL~L~~t~I~-~LP~~-l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  593 ELVHLRYLDLSDTGIS-HLPSG-LGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hhhhhhcccccCCCcc-ccchH-HHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence            8888888888888887 77776 788888888888777543222 234445777777776554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.64  E-value=1.6e-09  Score=111.34  Aligned_cols=176  Identities=24%  Similarity=0.290  Sum_probs=119.4

Q ss_pred             ChhhhhcCCCccEEEccCCcCCCCCccchhcc-ccCcEEEccCCccCCcCCchhh--------cc--CCCCCEEEccCCc
Q 042884          342 PLEIGDILPNLISFNISMNALDGSIPSSFGNI-NLLKILDLSNNQLTGEIPEHLA--------VG--CVYLDFLALSNNS  410 (614)
Q Consensus       342 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~--------~~--~~~L~~L~l~~n~  410 (614)
                      |-.++. +.+|++|.+.++.+..  ...+..+ ..|+.|. ..|.+. .+ ..+|        .+  ...|.+.+.+.|.
T Consensus       102 pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~-Al-~~v~ascggd~~ns~~Wn~L~~a~fsyN~  175 (1096)
T KOG1859|consen  102 PISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLD-AL-RHVFASCGGDISNSPVWNKLATASFSYNR  175 (1096)
T ss_pred             Cceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHH-HH-HHHHHHhccccccchhhhhHhhhhcchhh
Confidence            556666 7889999999988863  1222222 2344442 222221 11 1111        11  2236667777887


Q ss_pred             ccc-----cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc
Q 042884          411 LEG-----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  485 (614)
Q Consensus       411 l~~-----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l  485 (614)
                      +..     +.++.++.|+|++|+++..  +.+..++.|++|||++|.++....-...++. |+.|.+++|.++..  .++
T Consensus       176 L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gi  250 (1096)
T KOG1859|consen  176 LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGI  250 (1096)
T ss_pred             HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhH
Confidence            764     4568899999999999854  3788899999999999999855444444554 99999999998743  457


Q ss_pred             cCCCCCCeEeccCCcCcccCC-ccccccCCcCcccccCCcCCCC
Q 042884          486 VELKTLEVFSLAFNNLSGEIP-EWKAQFATFNESSYEGNTFLCG  528 (614)
Q Consensus       486 ~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~~~~~~n~~~c~  528 (614)
                      .++.+|+.||+++|-+.+.-. ..+..+..|..+.++|||..|.
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            888999999999998874211 2245567888899999999885

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.61  E-value=7.3e-08  Score=107.14  Aligned_cols=128  Identities=16%  Similarity=0.050  Sum_probs=67.0

Q ss_pred             CCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCC--CCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCC
Q 042884           18 PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSS--LHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFK   95 (614)
Q Consensus        18 ~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~   95 (614)
                      ...+...+-+|.+..+     +.-..++.|++|-+..|.  +.......|..++.|++|++++|.-.+.+|.  .++.+-
T Consensus       523 ~~~rr~s~~~~~~~~~-----~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~--~I~~Li  595 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHI-----AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS--SIGELV  595 (889)
T ss_pred             hheeEEEEeccchhhc-----cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh--HHhhhh
Confidence            4455566666555433     111223356666666553  3222233355566666666666555555553  455666


Q ss_pred             CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCC
Q 042884           96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNN  160 (614)
Q Consensus        96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n  160 (614)
                      +|++|++++..+.   .+|..+.+ +..|.+|++..+.-..    .++.....+++||+|.+...
T Consensus       596 ~LryL~L~~t~I~---~LP~~l~~-Lk~L~~Lnl~~~~~l~----~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS---HLPSGLGN-LKKLIYLNLEVTGRLE----SIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hhhcccccCCCcc---ccchHHHH-HHhhheeccccccccc----cccchhhhcccccEEEeecc
Confidence            6666666666655   56666666 6666666665544331    22323444666666666444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.55  E-value=1.8e-09  Score=110.98  Aligned_cols=178  Identities=25%  Similarity=0.319  Sum_probs=95.9

Q ss_pred             ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCcccc----------CCccCCCCCCCCCCCCEEeCcCcccCC
Q 042884           40 ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEV----------NGVVRGQGFPHFKSLEHLNMERARIAP  109 (614)
Q Consensus        40 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~----------~~~~~~~~~~~l~~L~~L~l~~n~l~~  109 (614)
                      .+-.+++|++|.+.++.+..  ...+..+..-.+-++.++...          +.+-   .-.....|.+.+.++|.+. 
T Consensus       104 ~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~---ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDIS---NSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             eeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccc---cchhhhhHhhhhcchhhHH-
Confidence            45567788888888887643  222322222222222222211          1111   0111235556666666665 


Q ss_pred             CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCc-cccCCCCCcEEEcccCCCCC
Q 042884          110 NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPW-CVANMTSLRILDVSSNQLTG  188 (614)
Q Consensus       110 ~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~  188 (614)
                        .+-..+.- ++.|+.|+|+.|+++.    ..  .+..+++|++|||++|.+.. +|. ...++. |+.|.+++|.++ 
T Consensus       178 --~mD~SLql-l~ale~LnLshNk~~~----v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~-  245 (1096)
T KOG1859|consen  178 --LMDESLQL-LPALESLNLSHNKFTK----VD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALT-  245 (1096)
T ss_pred             --hHHHHHHH-HHHhhhhccchhhhhh----hH--HHHhcccccccccccchhcc-ccccchhhhh-heeeeecccHHH-
Confidence              44445544 6666777777766652    21  46666677777777776662 332 223333 666777776665 


Q ss_pred             ccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccc
Q 042884          189 SIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELN  237 (614)
Q Consensus       189 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  237 (614)
                      ++-.  +.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+.
T Consensus       246 tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  246 TLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            4443  5666666677777766654444445555566666666666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=8.6e-09  Score=95.31  Aligned_cols=173  Identities=24%  Similarity=0.195  Sum_probs=109.5

Q ss_pred             ccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCc-cCCcCCchhhccCCCCCEE
Q 042884          326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQ-LTGEIPEHLAVGCVYLDFL  404 (614)
Q Consensus       326 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L  404 (614)
                      .|+.+||+...|+..--..+...+..|+.|.|.++++...+...++.-.+|+.|+++.+. ++..--..++..|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666655432222333446667777777777766666666666777777777753 3322333456677777777


Q ss_pred             EccCCcccc--------cccCCccEEEcCCCcCC---ccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCCCCCCEEEc
Q 042884          405 ALSNNSLEG--------KVLSLLSGLDLSCNKLI---GHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDL  472 (614)
Q Consensus       405 ~l~~n~l~~--------~~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l  472 (614)
                      +++.|.+..        ..-+.|+.|+|+++.-.   ..+..--..+++|.+||||+|. ++...-..|..++-|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            777776553        23456777888776422   1122223568899999999874 44322345667888999999


Q ss_pred             cCCcCCCCCcccc---cCCCCCCeEeccCCc
Q 042884          473 SYNKLNGKIPHQL---VELKTLEVFSLAFNN  500 (614)
Q Consensus       473 s~N~l~~~~~~~l---~~l~~L~~L~l~~N~  500 (614)
                      +.|..  ++|+.+   ...|+|.+||+.++-
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            98875  566654   456788888887763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=6.1e-09  Score=96.27  Aligned_cols=184  Identities=15%  Similarity=0.090  Sum_probs=112.1

Q ss_pred             CCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCCCC
Q 042884           19 SLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSL   97 (614)
Q Consensus        19 ~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L   97 (614)
                      .|++||||+-.|+...   .. -++.|..|+.|.+.+++++..+...++.-..|++++++.++-.........+.+++.|
T Consensus       186 Rlq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            4788888887776431   23 5677888888888888888777778888888888888877755444333456777888


Q ss_pred             CEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcc-ccccCccccCCCCC
Q 042884           98 EHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDL-RGSLPWCVANMTSL  176 (614)
Q Consensus        98 ~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L  176 (614)
                      ..|+++.+.+... .+-..+..--++|..|+++++.-.-.. .-.+.-...+++|..|||++|.. +...-..|..++.|
T Consensus       263 ~~LNlsWc~l~~~-~Vtv~V~hise~l~~LNlsG~rrnl~~-sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  263 DELNLSWCFLFTE-KVTVAVAHISETLTQLNLSGYRRNLQK-SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hhcCchHhhccch-hhhHHHhhhchhhhhhhhhhhHhhhhh-hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            8888888776531 111222222456777777765321100 11111124567777777776642 32223345566777


Q ss_pred             cEEEcccCCCCCccCCC--CCCCCCCCCEEEcccC
Q 042884          177 RILDVSSNQLTGSIASS--PLAHLTSIEELHLSDN  209 (614)
Q Consensus       177 ~~L~L~~n~l~~~~~~~--~~~~l~~L~~L~L~~n  209 (614)
                      ++|+++.|..  .+|..  .+...|.|.+|++.++
T Consensus       341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            7777777753  22322  1455667777776665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.24  E-value=5.9e-08  Score=79.46  Aligned_cols=106  Identities=21%  Similarity=0.299  Sum_probs=53.2

Q ss_pred             ccEEEccCCcCCCC--CccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcC
Q 042884          352 LISFNISMNALDGS--IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKL  429 (614)
Q Consensus       352 L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l  429 (614)
                      +..++|++|++-..  .+..+.....|+..++++|.+. .+|..+....+                  .++.++|++|.+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~------------------t~t~lNl~~nei   89 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFP------------------TATTLNLANNEI   89 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccc------------------hhhhhhcchhhh
Confidence            44455555554311  1122333445556666777666 56665533222                  233333333444


Q ss_pred             CccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCC
Q 042884          430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN  478 (614)
Q Consensus       430 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  478 (614)
                      + .+|..+..++.|+.|+++.|.+... |..+..+.++-.|+..+|.+.
T Consensus        90 s-dvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   90 S-DVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             h-hchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCCCCccc
Confidence            4 4445566666666666666666532 334444556666666666555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=5.6e-07  Score=83.54  Aligned_cols=65  Identities=15%  Similarity=0.208  Sum_probs=36.1

Q ss_pred             ccCCccEEEcCCCcCCcc-CCccccCCCcCCEEECcCCcCCCCC-CcCCCCCCCCCEEEccCCcCCC
Q 042884          415 VLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNLSHNNLTGLI-PSTFSNLKHIESLDLSYNKLNG  479 (614)
Q Consensus       415 ~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~N~l~~  479 (614)
                      ..+++..+.+..|++... ....+..++.+.-|+|+.|+|.+.. -+.+.++++|+.|.+++|.+..
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            345555566666655432 1233445555666667666664321 1445666677777777776653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=5.6e-07  Score=83.55  Aligned_cols=86  Identities=20%  Similarity=0.239  Sum_probs=39.5

Q ss_pred             CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc-CccccC
Q 042884           94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL-PWCVAN  172 (614)
Q Consensus        94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~  172 (614)
                      ++.++.+||.+|.++.-..+...+.+ +|.|++|+++.|.+....-..|    ..+.+|++|.|.+..+.-.. ...+..
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~-lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQ-LPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhc-CccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhhhhhhhc
Confidence            34555566666655532233333333 5566666666555553111111    13445555555555443221 122344


Q ss_pred             CCCCcEEEcccC
Q 042884          173 MTSLRILDVSSN  184 (614)
Q Consensus       173 l~~L~~L~L~~n  184 (614)
                      ++.+++|+++.|
T Consensus       145 lP~vtelHmS~N  156 (418)
T KOG2982|consen  145 LPKVTELHMSDN  156 (418)
T ss_pred             chhhhhhhhccc
Confidence            455555555555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=3.4e-07  Score=75.05  Aligned_cols=114  Identities=23%  Similarity=0.358  Sum_probs=82.0

Q ss_pred             CCcEEEccCCCCCCCCChhH--HhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884          277 DLEYVDLSHTKMNGEFPNWL--LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS  354 (614)
Q Consensus       277 ~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~  354 (614)
                      .+..++|+.|++. .+++..  ......|+..++++|.+...++.--...+.++.+++++|.|+ .+|.++.. ++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhh
Confidence            4566788888775 454432  344566777788888887655544445567888888888887 78888544 888888


Q ss_pred             EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhh
Q 042884          355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLA  395 (614)
Q Consensus       355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  395 (614)
                      |+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+|
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~  143 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF  143 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence            888888887 45666666888888888888876 7776654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=2.8e-07  Score=84.42  Aligned_cols=196  Identities=20%  Similarity=0.214  Sum_probs=98.7

Q ss_pred             CCCCCEEeCcCcccCCCcchhhHhhhc---CCCcCEEeccCCcCCCCCCCcCc------hhhcCCCCCCeEECcCCcccc
Q 042884           94 FKSLEHLNMERARIAPNTSFLQIIGES---TPSLKYLSLSDFTLSTNSSRILD------RGLCSLMHLQELYKVNNDLRG  164 (614)
Q Consensus        94 l~~L~~L~l~~n~l~~~~~~~~~l~~~---l~~L~~L~L~~n~l~~~~~~i~~------~~~~~l~~L~~L~L~~n~i~~  164 (614)
                      +..++.++|++|.+..  .-...+++.   -.+|+..+++.--.....-.+++      .++.++|+|+..+|+.|.+..
T Consensus        29 ~d~~~evdLSGNtigt--EA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          29 MDELVEVDLSGNTIGT--EAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hcceeEEeccCCcccH--HHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            5566666666666642  222233221   34555555554221111101111      246677888888888887776


Q ss_pred             ccCcc----ccCCCCCcEEEcccCCCCCccCCCCC-------------CCCCCCCEEEcccCcCcc-c--cCcccccCCC
Q 042884          165 SLPWC----VANMTSLRILDVSSNQLTGSIASSPL-------------AHLTSIEELHLSDNHFRI-P--ISLEPLFNHS  224 (614)
Q Consensus       165 ~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~-------------~~l~~L~~L~L~~n~~~~-~--~~~~~~~~l~  224 (614)
                      ..|..    ++.-+.|++|.|++|.+. .+..+-+             ..-|.|+......|++.. .  .....+....
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            55543    345567888888887764 3333211             234566666666665531 0  0111122334


Q ss_pred             CccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC---ChhHHhcCC
Q 042884          225 RLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEF---PNWLLENNT  301 (614)
Q Consensus       225 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~~~~  301 (614)
                      .|+++.+.+|.|.......            |           ....++.+++|++||+.+|.++-.-   -......++
T Consensus       186 ~lk~vki~qNgIrpegv~~------------L-----------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTM------------L-----------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             CceeEEeeecCcCcchhHH------------H-----------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence            5556666555543211000            0           0112345677888888888776211   111233455


Q ss_pred             CccEEEccCCCCCC
Q 042884          302 KLKTLFLVNDSLAG  315 (614)
Q Consensus       302 ~L~~L~l~~n~i~~  315 (614)
                      .|+.|.+.+|-++.
T Consensus       243 ~lrEL~lnDClls~  256 (388)
T COG5238         243 LLRELRLNDCLLSN  256 (388)
T ss_pred             hhhhccccchhhcc
Confidence            66777776666553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.04  E-value=8.2e-06  Score=71.84  Aligned_cols=129  Identities=21%  Similarity=0.253  Sum_probs=90.4

Q ss_pred             CCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCC
Q 042884           97 LEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSL  176 (614)
Q Consensus        97 L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  176 (614)
                      =+.+++.+..+.    ..+.++....+...+||++|.+.    .++  .|..++.|.+|.+++|+|+.+.|.--.-+++|
T Consensus        21 e~e~~LR~lkip----~ienlg~~~d~~d~iDLtdNdl~----~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l   90 (233)
T KOG1644|consen   21 ERELDLRGLKIP----VIENLGATLDQFDAIDLTDNDLR----KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNL   90 (233)
T ss_pred             cccccccccccc----chhhccccccccceecccccchh----hcc--cCCCccccceEEecCCcceeeccchhhhcccc
Confidence            345555555543    11223443567788899999876    333  47888999999999999998777666667889


Q ss_pred             cEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccc--cCcccccCCCCccEEEccCCc
Q 042884          177 RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIP--ISLEPLFNHSRLKIFDAENNE  235 (614)
Q Consensus       177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L~l~~n~  235 (614)
                      +.|.|.+|.|...-.-..+..+|+|++|.+-+|+....  .-...+..+++|++||++.-.
T Consensus        91 ~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   91 KTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            99999999887222223367889999999999987621  112235678999999987643

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.03  E-value=2e-05  Score=78.79  Aligned_cols=130  Identities=15%  Similarity=0.257  Sum_probs=75.4

Q ss_pred             hcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCC-cCCCCCccchhccccC
Q 042884          298 ENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMN-ALDGSIPSSFGNINLL  376 (614)
Q Consensus       298 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  376 (614)
                      ..+.+++.|++++|.++.++.    -..+|+.|.++++.--..+|..+   .++|+.|++++| .+. .+|      .+|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sL  114 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ESV  114 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------ccc
Confidence            346888999999988777541    23478889888743323666533   357888888887 444 333      346


Q ss_pred             cEEEccCCccC--CcCCchhhccCCCCCEEEccCCc-c-----cccccCCccEEEcCCCcCCccCCccccCCCcCCEEEC
Q 042884          377 KILDLSNNQLT--GEIPEHLAVGCVYLDFLALSNNS-L-----EGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  448 (614)
Q Consensus       377 ~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~l~~n~-l-----~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  448 (614)
                      +.|+++.+...  +.+|.       +|+.|.+.+++ .     ....|++|++|++++|... ..|+.+.  .+|+.|++
T Consensus       115 e~L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPN-------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             ceEEeCCCCCcccccCcc-------hHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            67777665542  12332       34555554322 1     1123556777777666654 2333333  46666666


Q ss_pred             cCC
Q 042884          449 SHN  451 (614)
Q Consensus       449 ~~n  451 (614)
                      +.+
T Consensus       185 s~n  187 (426)
T PRK15386        185 HIE  187 (426)
T ss_pred             ccc
Confidence            655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.2e-05  Score=53.37  Aligned_cols=36  Identities=39%  Similarity=0.645  Sum_probs=19.5

Q ss_pred             CCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCc
Q 042884          466 HIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS  502 (614)
Q Consensus       466 ~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  502 (614)
                      +|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666665 34444556666666666666555

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.82  E-value=3.8e-05  Score=65.58  Aligned_cols=123  Identities=24%  Similarity=0.301  Sum_probs=66.1

Q ss_pred             cccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCC
Q 042884          271 FLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP  350 (614)
Q Consensus       271 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~  350 (614)
                      .|.++++|+.+.+.. .+. .++...|..+++|+.+.+..+ +..+....|.++++++.+.+.+ .+. .++...+..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            455667788888774 444 566666788888888888774 7777777788887888888865 443 45566666678


Q ss_pred             CccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCC
Q 042884          351 NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD  402 (614)
Q Consensus       351 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  402 (614)
                      +++.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence            8888888765 554556677776 888888776 444 67777777776653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=9.3e-06  Score=88.25  Aligned_cols=139  Identities=18%  Similarity=0.267  Sum_probs=81.9

Q ss_pred             CCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCC
Q 042884           95 KSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMT  174 (614)
Q Consensus        95 ~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  174 (614)
                      .+|++|++++...- ....+..++..+|.|++|.+++-.+..   .-...-..++|+|..||+++++++..  ..+++++
T Consensus       122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL--SGISRLK  195 (699)
T ss_pred             HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc--HHHhccc
Confidence            46777777775432 125566666667777777777755543   11112334677777777777777643  5667777


Q ss_pred             CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCcccc-----CcccccCCCCccEEEccCCccccc
Q 042884          175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPI-----SLEPLFNHSRLKIFDAENNELNAE  239 (614)
Q Consensus       175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~  239 (614)
                      +|+.|.+.+=.+...-.-..+-++++|+.||+|..+.....     ..+.-..+++|+.||.++..+...
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            77777776655542111112456777777777765543111     011233567888888887766544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=0.00012  Score=73.30  Aligned_cols=134  Identities=16%  Similarity=0.279  Sum_probs=84.1

Q ss_pred             CCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCC-ccCCcCCchhhccCCCC
Q 042884          323 SHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN-QLTGEIPEHLAVGCVYL  401 (614)
Q Consensus       323 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~L  401 (614)
                      .+.+++.|++++|.++ .+|.    ..++|+.|.++++.--..+|+.+  .++|+.|++++| .+. .+|.       +|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------sL  114 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------SV  114 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------cc
Confidence            4578889999999887 7772    24579999998754434556544  357888999888 554 4543       46


Q ss_pred             CEEEccCCccc--ccccCCccEEEcCCCcCC--ccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCc
Q 042884          402 DFLALSNNSLE--GKVLSLLSGLDLSCNKLI--GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK  476 (614)
Q Consensus       402 ~~L~l~~n~l~--~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~  476 (614)
                      +.|+++++...  +..|++|+.|.+.+++..  ...|..+.  ++|++|++++|.... .|..+.  .+|+.|+++.|.
T Consensus       115 e~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             ceEEeCCCCCcccccCcchHhheeccccccccccccccccC--CcccEEEecCCCccc-Cccccc--ccCcEEEecccc
Confidence            67777665543  245677888877543311  01111111  568888888777552 333333  577888887763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.80  E-value=2.1e-05  Score=52.18  Aligned_cols=36  Identities=33%  Similarity=0.529  Sum_probs=16.2

Q ss_pred             CCCeEECcCCccccccCccccCCCCCcEEEcccCCCC
Q 042884          151 HLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLT  187 (614)
Q Consensus       151 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  187 (614)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4445555555554 23333445555555555555444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=3.8e-06  Score=91.27  Aligned_cols=160  Identities=21%  Similarity=0.319  Sum_probs=109.0

Q ss_pred             CCcCEEeccCCcCCCCCCCcCchhh-cCCCCCCeEECcCCccccc-cCccccCCCCCcEEEcccCCCCCccCCCCCCCCC
Q 042884          122 PSLKYLSLSDFTLSTNSSRILDRGL-CSLMHLQELYKVNNDLRGS-LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLT  199 (614)
Q Consensus       122 ~~L~~L~L~~n~l~~~~~~i~~~~~-~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  199 (614)
                      .+|++|++++.....   .--+..+ ..+|.|++|.+.+-.+... .-....++++|..||+|+.+++ .+..  ++.++
T Consensus       122 ~nL~~LdI~G~~~~s---~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~G--IS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFS---NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLSG--ISRLK  195 (699)
T ss_pred             HhhhhcCccccchhh---ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcHH--Hhccc
Confidence            589999998865432   1111123 4689999999998776432 2233567899999999999998 5643  78999


Q ss_pred             CCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCc
Q 042884          200 SIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLE  279 (614)
Q Consensus       200 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~  279 (614)
                      +|+.|.+.+=.+........+.++++|++||+|..+.....           .+-..++           +.-..+|+|+
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------~ii~qYl-----------ec~~~LpeLr  253 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------KIIEQYL-----------ECGMVLPELR  253 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------HHHHHHH-----------HhcccCcccc
Confidence            99999998877764344456889999999999986543321           1111111           1223478999


Q ss_pred             EEEccCCCCCCCCChhHHhcCCCccEEEcc
Q 042884          280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLV  309 (614)
Q Consensus       280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~  309 (614)
                      .||.|++.+...+-..+...-++|+.+..-
T Consensus       254 fLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  254 FLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             EEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            999999988866655555555666655443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.78  E-value=3.3e-05  Score=68.13  Aligned_cols=118  Identities=21%  Similarity=0.247  Sum_probs=85.5

Q ss_pred             EEEccCCccc-----ccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcC
Q 042884          403 FLALSNNSLE-----GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL  477 (614)
Q Consensus       403 ~L~l~~n~l~-----~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l  477 (614)
                      .+++.+.++.     |........+||++|.+...  +.|..+++|..|.|++|+|+.+.|..-.-++.|+.|.|.+|.|
T Consensus        23 e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   23 ELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccccccccccchhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            4444444443     23356677899999988643  4578889999999999999988887777778899999999988


Q ss_pred             CCCC-cccccCCCCCCeEeccCCcCcccCC---ccccccCCcCcccccC
Q 042884          478 NGKI-PHQLVELKTLEVFSLAFNNLSGEIP---EWKAQFATFNESSYEG  522 (614)
Q Consensus       478 ~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~~~~~~  522 (614)
                      .... -+-+..+|.|++|.+-+|+.+..--   ..+..+++++.+|+++
T Consensus       101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            7421 1236678899999999999874322   1345677788888765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.72  E-value=6.1e-05  Score=64.30  Aligned_cols=110  Identities=20%  Similarity=0.222  Sum_probs=68.4

Q ss_pred             CChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchh
Q 042884          292 FPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG  371 (614)
Q Consensus       292 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  371 (614)
                      ++...|.++.+|+.+.+.. .+..+...+|.++++++.+++.++ +. .++...+..+++++.+.+.+ .+.......|.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence            4556688888999999875 677777888988888999998875 65 67777777777899999876 55445566788


Q ss_pred             ccccCcEEEccCCccCCcCCchhhccCCCCCEEEccC
Q 042884          372 NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN  408 (614)
Q Consensus       372 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~  408 (614)
                      .+++|+.+++..+ +. .++...|.++ .|+.+.+..
T Consensus        79 ~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            8889999988775 55 6777777766 666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.53  E-value=4.2e-05  Score=70.44  Aligned_cols=189  Identities=19%  Similarity=0.121  Sum_probs=105.8

Q ss_pred             ccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhh-ccCCcEEeccCccccCCccCC
Q 042884           11 LQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIAS-LFPSLKNLSMSYCEVNGVVRG   88 (614)
Q Consensus        11 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~-l~~l~~l~l~~~~~~~~~~~~   88 (614)
                      .+++.++|+|+..+||.|.|.......+. -+++-+.|.+|.+++|.+....-..++. +..|-     .|.        
T Consensus        85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la-----~nK--------  151 (388)
T COG5238          85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA-----YNK--------  151 (388)
T ss_pred             HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH-----HHh--------
Confidence            34667788888888888887655321111 4677788888888888764222112210 00000     011        


Q ss_pred             CCCCCCCCCCEEeCcCcccCC-CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCc-hhhcCCCCCCeEECcCCcccccc
Q 042884           89 QGFPHFKSLEHLNMERARIAP-NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILD-RGLCSLMHLQELYKVNNDLRGSL  166 (614)
Q Consensus        89 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~-~~~~~l~~L~~L~L~~n~i~~~~  166 (614)
                       -..+-|.|++.....|++.. ...........-.+|+++.+..|.|....+.... ..+..+.+|+.||+..|.++...
T Consensus       152 -Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g  230 (388)
T COG5238         152 -KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG  230 (388)
T ss_pred             -hhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh
Confidence             13344667777777777652 1122222222135777888887777642211111 13455678888888888776432


Q ss_pred             ----CccccCCCCCcEEEcccCCCCCccCCCC---C--CCCCCCCEEEcccCcCcc
Q 042884          167 ----PWCVANMTSLRILDVSSNQLTGSIASSP---L--AHLTSIEELHLSDNHFRI  213 (614)
Q Consensus       167 ----~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~--~~l~~L~~L~L~~n~~~~  213 (614)
                          ..+++..+.|+.|.+..|-++..-....   |  ...++|..|-..+|...+
T Consensus       231 S~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         231 SRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence                3445566678888888876652111111   1  135777888888886654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.15  E-value=2.2e-05  Score=76.64  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=23.2

Q ss_pred             CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCC
Q 042884          274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS  312 (614)
Q Consensus       274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~  312 (614)
                      .+..|+.+.++++.......-.....+++|+.+++-+++
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            455677777777765433222335566777777766554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.0006  Score=63.07  Aligned_cols=85  Identities=26%  Similarity=0.344  Sum_probs=45.7

Q ss_pred             CCCCCccCEEEccCC--ccccCCChhhhhcCCCccEEEccCCcCCC-CCccchhccccCcEEEccCCccCCcCC---chh
Q 042884          321 IHSHKRLRQLDVSNN--NFQGHIPLEIGDILPNLISFNISMNALDG-SIPSSFGNINLLKILDLSNNQLTGEIP---EHL  394 (614)
Q Consensus       321 ~~~l~~L~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~  394 (614)
                      |..+++|++|.++.|  ++.+.++.-+-. +|+|+++++++|++.. ..-..+..+.+|..|++.+|..+. ..   ..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~v  138 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKV  138 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHH
Confidence            334556666666666  444333333333 4677777777776652 111224455666777777776552 22   234


Q ss_pred             hccCCCCCEEEcc
Q 042884          395 AVGCVYLDFLALS  407 (614)
Q Consensus       395 ~~~~~~L~~L~l~  407 (614)
                      |.-+++|++|+-.
T Consensus       139 f~ll~~L~~LD~~  151 (260)
T KOG2739|consen  139 FLLLPSLKYLDGC  151 (260)
T ss_pred             HHHhhhhcccccc
Confidence            5556666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=2.9e-05  Score=71.80  Aligned_cols=81  Identities=23%  Similarity=0.216  Sum_probs=39.4

Q ss_pred             CCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCC-CCCCCCC
Q 042884          121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIAS-SPLAHLT  199 (614)
Q Consensus       121 l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~  199 (614)
                      +.+.+.|++.++.+++    |.  -...|+.|+.|.|+-|+|+...|  |..|++|++|.|..|.|. .+.. ..+.+++
T Consensus        18 l~~vkKLNcwg~~L~D----Is--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD----IS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccH----HH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence            4455566666665552    11  12345566666666666553332  555555555555555554 2211 1233444


Q ss_pred             CCCEEEcccCc
Q 042884          200 SIEELHLSDNH  210 (614)
Q Consensus       200 ~L~~L~L~~n~  210 (614)
                      +|+.|.|..|+
T Consensus        89 sLr~LWL~ENP   99 (388)
T KOG2123|consen   89 SLRTLWLDENP   99 (388)
T ss_pred             hhhhHhhccCC
Confidence            44444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.00016  Score=66.99  Aligned_cols=81  Identities=21%  Similarity=0.251  Sum_probs=39.6

Q ss_pred             ccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCc-hhhccCCCCCEE
Q 042884          326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE-HLAVGCVYLDFL  404 (614)
Q Consensus       326 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L  404 (614)
                      ++++|+..++.+. .|  .++..++.|++|.|+-|+|+..  ..|..|++|++|+|..|.|. .+.+ ....++++|+.|
T Consensus        20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence            4444555555443 22  2333455555555555555533  22555555666666655554 2222 223455555555


Q ss_pred             EccCCccc
Q 042884          405 ALSNNSLE  412 (614)
Q Consensus       405 ~l~~n~l~  412 (614)
                      +|..|+-.
T Consensus        94 WL~ENPCc  101 (388)
T KOG2123|consen   94 WLDENPCC  101 (388)
T ss_pred             hhccCCcc
Confidence            55555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.56  E-value=0.00049  Score=67.58  Aligned_cols=162  Identities=19%  Similarity=0.070  Sum_probs=79.8

Q ss_pred             cCCcEEeccCccccCCccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchh-hc
Q 042884           69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRG-LC  147 (614)
Q Consensus        69 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~-~~  147 (614)
                      ..+.++++.+++......-...-..+..|++|+.+++.-.+ ..+...++...++|+.|.++.++--+   ..-... -.
T Consensus       268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~-d~~l~aLg~~~~~L~~l~l~~c~~fs---d~~ft~l~r  343 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT-DEVLWALGQHCHNLQVLELSGCQQFS---DRGFTMLGR  343 (483)
T ss_pred             hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc-hHHHHHHhcCCCceEEEeccccchhh---hhhhhhhhc
Confidence            33455555555443322111123445667777777665322 13344555557777777777765221   100001 13


Q ss_pred             CCCCCCeEECcCCcccc--ccCccccCCCCCcEEEcccCCCCCccC----CCCCCCCCCCCEEEcccCcCccccCccccc
Q 042884          148 SLMHLQELYKVNNDLRG--SLPWCVANMTSLRILDVSSNQLTGSIA----SSPLAHLTSIEELHLSDNHFRIPISLEPLF  221 (614)
Q Consensus       148 ~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~  221 (614)
                      +.+.|+.+++.++....  .+...-.+++.|+.|.++++.....-.    ...-..+..|+.+.+++++...+.....+.
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~  423 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS  423 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence            56677777777665431  122223456677777777664320100    001123456666777776654333333445


Q ss_pred             CCCCccEEEccCC
Q 042884          222 NHSRLKIFDAENN  234 (614)
Q Consensus       222 ~l~~L~~L~l~~n  234 (614)
                      .+++|+.+++-++
T Consensus       424 ~c~~Leri~l~~~  436 (483)
T KOG4341|consen  424 ICRNLERIELIDC  436 (483)
T ss_pred             hCcccceeeeech
Confidence            5555665555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.53  E-value=0.0021  Score=59.59  Aligned_cols=62  Identities=19%  Similarity=0.216  Sum_probs=26.7

Q ss_pred             CCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEEC
Q 042884           93 HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYK  157 (614)
Q Consensus        93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L  157 (614)
                      ++++|++|++++|.+.....+ ..+.. +++|..|++..|..+. .-..-...|.-+++|++|+-
T Consensus        89 ~~P~l~~l~ls~Nki~~lstl-~pl~~-l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKDLSTL-RPLKE-LENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hCCceeEEeecCCcccccccc-chhhh-hcchhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence            345555555555555421111 12223 4555555555554432 00111123444555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.02  E-value=0.0049  Score=65.81  Aligned_cols=113  Identities=21%  Similarity=0.107  Sum_probs=57.8

Q ss_pred             CCCCCcEEEccCCCCCCCC-ChhHHhcCCCccEEEccCC-CCCCCC----CCCCCCCCccCEEEccCCc-cccCCChhhh
Q 042884          274 HQHDLEYVDLSHTKMNGEF-PNWLLENNTKLKTLFLVND-SLAGPF----RLPIHSHKRLRQLDVSNNN-FQGHIPLEIG  346 (614)
Q Consensus       274 ~l~~L~~L~Ls~n~i~~~~-~~~~~~~~~~L~~L~l~~n-~i~~~~----~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~  346 (614)
                      .++.|+.+.+..+.-.... -..+...++.|+.|+++.+ ......    ......+++|+.|+++.+. +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            3677777777776332221 1223556777888877763 111111    1122334666677776665 4322222333


Q ss_pred             hcCCCccEEEccCCc-CCCC-CccchhccccCcEEEccCCcc
Q 042884          347 DILPNLISFNISMNA-LDGS-IPSSFGNINLLKILDLSNNQL  386 (614)
Q Consensus       347 ~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l  386 (614)
                      ..+++|+.|.+.++. ++.. +......+++|++|+++.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            335667777666555 3422 122234456677777776643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.78  E-value=0.0064  Score=64.93  Aligned_cols=114  Identities=24%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             CCCCCEEECCCc-ccCCCCCCCCcccCCCCCCCEEeCCCC-CCCcc----chHHHhhccCCcEEeccCccccCCccCCCC
Q 042884           17 LPSLNTLYLKHN-NFTGTATTTTQELHNFTNLEYSTLSGS-SLHIS----LLQSIASLFPSLKNLSMSYCEVNGVVRGQG   90 (614)
Q Consensus        17 l~~L~~L~Ls~n-~i~~~~~~~~~~l~~l~~L~~L~Ls~n-~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~   90 (614)
                      .++|+.|.+.++ .+....  ..+....++.|+.|+++.+ .....    .......+..+..++++.+...+...-...
T Consensus       187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            566666666655 233210  0124455666666666652 11111    112233445566666665553222211111


Q ss_pred             CCCCCCCCEEeCcCcc-cCCCcchhhHhhhcCCCcCEEeccCCcC
Q 042884           91 FPHFKSLEHLNMERAR-IAPNTSFLQIIGESTPSLKYLSLSDFTL  134 (614)
Q Consensus        91 ~~~l~~L~~L~l~~n~-l~~~~~~~~~l~~~l~~L~~L~L~~n~l  134 (614)
                      ...+++|++|.+.++. ++.  .-...+...++.|++|+++++..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCcc
Confidence            2225666666665555 332  22233333366677777766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.46  E-value=0.014  Score=31.97  Aligned_cols=12  Identities=58%  Similarity=0.681  Sum_probs=5.2

Q ss_pred             CCEEEccCCcCC
Q 042884          467 IESLDLSYNKLN  478 (614)
Q Consensus       467 L~~L~ls~N~l~  478 (614)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>TIGR00864 PCC polycystin cation channel protein

Probab=94.45  E-value=0.032  Score=68.11  Aligned_cols=76  Identities=14%  Similarity=0.085  Sum_probs=43.3

Q ss_pred             EccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCc-cccccCCcCcccccCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 042884          471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE-WKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNER  549 (614)
Q Consensus       471 ~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~  549 (614)
                      ||++|+|+.+.+..|..+++|+.|+|++|++.|.+.- |+..|..-....+.      ......|..|...++.+.....
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~------~~~~i~CasP~~LrG~~L~~l~   74 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVR------QPEAALCAGPGALAGQPLLGIP   74 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcccc------CCcccCCCCChHHCCCCcccCC
Confidence            5778888877667777777888888888777765442 23322211111000      0011257788777776666555


Q ss_pred             CCC
Q 042884          550 DDN  552 (614)
Q Consensus       550 ~~~  552 (614)
                      ..+
T Consensus        75 ~~d   77 (2740)
T TIGR00864        75 LLD   77 (2740)
T ss_pred             ccc
Confidence            443

Note: this model has been restricted to the amino half because for technical reasons.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.31  E-value=0.018  Score=31.59  Aligned_cols=11  Identities=27%  Similarity=0.223  Sum_probs=4.3

Q ss_pred             CeEECcCCccc
Q 042884          153 QELYKVNNDLR  163 (614)
Q Consensus       153 ~~L~L~~n~i~  163 (614)
                      ++|++++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33344444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.46  E-value=0.00052  Score=71.58  Aligned_cols=190  Identities=22%  Similarity=0.153  Sum_probs=92.9

Q ss_pred             CCEEeCCCCCCCccchH----HHhhccCCcEEeccCccccCCccC--CCCCCCC-CCCCEEeCcCcccCC--CcchhhHh
Q 042884           47 LEYSTLSGSSLHISLLQ----SIASLFPSLKNLSMSYCEVNGVVR--GQGFPHF-KSLEHLNMERARIAP--NTSFLQII  117 (614)
Q Consensus        47 L~~L~Ls~n~~~~~~~~----~~~~l~~l~~l~l~~~~~~~~~~~--~~~~~~l-~~L~~L~l~~n~l~~--~~~~~~~l  117 (614)
                      +.+|.|.+|.+......    .+...+.+..+++.+|++.+.-..  ...+... ..+++|++..+.++.  ...+.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55555555555433222    233344444555555544311000  0112222 445556666666542  22444555


Q ss_pred             hhcCCCcCEEeccCCcCCCCCCCcCchhhc----CCCCCCeEECcCCccccc----cCccccCCCC-CcEEEcccCCCCC
Q 042884          118 GESTPSLKYLSLSDFTLSTNSSRILDRGLC----SLMHLQELYKVNNDLRGS----LPWCVANMTS-LRILDVSSNQLTG  188 (614)
Q Consensus       118 ~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~-L~~L~L~~n~l~~  188 (614)
                      .. ...++.++++.|.+........+.++.    ...++++|++++|.++..    ....+...+. +..|++..|.+.+
T Consensus       169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            55 667777777777664322222222333    356677777777766521    1122333444 5567777776652


Q ss_pred             c----cCCCCCCCC-CCCCEEEcccCcCcccc---CcccccCCCCccEEEccCCcccc
Q 042884          189 S----IASSPLAHL-TSIEELHLSDNHFRIPI---SLEPLFNHSRLKIFDAENNELNA  238 (614)
Q Consensus       189 ~----~~~~~~~~l-~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~  238 (614)
                      .    +.. .+..+ ..+++++++.|.++..-   -...+..++.++.+.+++|.+..
T Consensus       248 ~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            2    111 13333 55677777777765211   11223445567777777766554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.46  E-value=0.00098  Score=69.58  Aligned_cols=194  Identities=23%  Similarity=0.208  Sum_probs=125.8

Q ss_pred             CCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhh----c-cCCcEEeccCccccCCc--cCCCC
Q 042884           19 SLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIAS----L-FPSLKNLSMSYCEVNGV--VRGQG   90 (614)
Q Consensus        19 ~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~----l-~~l~~l~l~~~~~~~~~--~~~~~   90 (614)
                      .+..|+|.+|.+..-....+. .+....+|..|+++.|.+.......+..    . ..++++.+..|...+.-  +....
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            377888888888766433333 6777888888899888876433332222    1 23444556666554221  11134


Q ss_pred             CCCCCCCCEEeCcCcccC--CCcchhhHhhh---cCCCcCEEeccCCcCCCCCCCcCchhhcCCCC-CCeEECcCCcccc
Q 042884           91 FPHFKSLEHLNMERARIA--PNTSFLQIIGE---STPSLKYLSLSDFTLSTNSSRILDRGLCSLMH-LQELYKVNNDLRG  164 (614)
Q Consensus        91 ~~~l~~L~~L~l~~n~l~--~~~~~~~~l~~---~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~-L~~L~L~~n~i~~  164 (614)
                      +.....++.++++.|.+.  +...++..+..   ...++++|++++|.++..........+...+. +..|++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            666788899999988873  11122333332   36789999999998876444444456666666 7789999998875


Q ss_pred             cc----CccccCC-CCCcEEEcccCCCCCccCC---CCCCCCCCCCEEEcccCcCc
Q 042884          165 SL----PWCVANM-TSLRILDVSSNQLTGSIAS---SPLAHLTSIEELHLSDNHFR  212 (614)
Q Consensus       165 ~~----~~~~~~l-~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~~~  212 (614)
                      ..    ...+..+ ..+++++++.|.+.+.-..   ..+..++.++++.++.|++.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            42    2334555 6789999999998732111   12456779999999999876

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.10  E-value=0.11  Score=29.77  Aligned_cols=21  Identities=43%  Similarity=0.651  Sum_probs=12.6

Q ss_pred             CCCcEEEcccCCCCCccCCCCC
Q 042884          174 TSLRILDVSSNQLTGSIASSPL  195 (614)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~  195 (614)
                      ++|+.|+|++|++. .+|.++|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5565544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.10  E-value=0.11  Score=29.77  Aligned_cols=21  Identities=43%  Similarity=0.651  Sum_probs=12.6

Q ss_pred             CCCcEEEcccCCCCCccCCCCC
Q 042884          174 TSLRILDVSSNQLTGSIASSPL  195 (614)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~  195 (614)
                      ++|+.|+|++|++. .+|.++|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5565544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.74  E-value=0.11  Score=26.29  Aligned_cols=13  Identities=69%  Similarity=0.861  Sum_probs=4.9

Q ss_pred             cCcEEEccCCccC
Q 042884          375 LLKILDLSNNQLT  387 (614)
Q Consensus       375 ~L~~L~l~~n~l~  387 (614)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555543

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.17  E-value=0.19  Score=28.75  Aligned_cols=16  Identities=38%  Similarity=0.542  Sum_probs=8.8

Q ss_pred             CCCCEEEccCCcCCCC
Q 042884          465 KHIESLDLSYNKLNGK  480 (614)
Q Consensus       465 ~~L~~L~ls~N~l~~~  480 (614)
                      ++|+.|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4555566666655533

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.17  E-value=0.19  Score=28.75  Aligned_cols=16  Identities=38%  Similarity=0.542  Sum_probs=8.8

Q ss_pred             CCCCEEEccCCcCCCC
Q 042884          465 KHIESLDLSYNKLNGK  480 (614)
Q Consensus       465 ~~L~~L~ls~N~l~~~  480 (614)
                      ++|+.|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4555566666655533

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.38  E-value=0.0061  Score=55.34  Aligned_cols=83  Identities=19%  Similarity=0.245  Sum_probs=48.3

Q ss_pred             CCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEec
Q 042884          417 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSL  496 (614)
Q Consensus       417 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l  496 (614)
                      ...+.||++.|++. .....|+-++.|..|+++.|.+. ..|..+..+..++.+++..|..+ ..|..+...+.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            34455666666654 22334555556666666666665 44555666666666666666665 55566666666666666


Q ss_pred             cCCcCc
Q 042884          497 AFNNLS  502 (614)
Q Consensus       497 ~~N~l~  502 (614)
                      .+|++.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            666643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.57  E-value=0.028  Score=51.21  Aligned_cols=88  Identities=23%  Similarity=0.245  Sum_probs=63.2

Q ss_pred             cCCchhhccCCCCCEEEccCCcccc-----cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCC
Q 042884          389 EIPEHLAVGCVYLDFLALSNNSLEG-----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN  463 (614)
Q Consensus       389 ~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  463 (614)
                      .+|-.-.......+.||++.|++..     ..++.+..|+++.|.+. ..|..+.++..++.+++.+|..+ ..|.++..
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k  109 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK  109 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence            3443323455667778888887653     34566777888888877 66777888888888888888776 55778888


Q ss_pred             CCCCCEEEccCCcCC
Q 042884          464 LKHIESLDLSYNKLN  478 (614)
Q Consensus       464 l~~L~~L~ls~N~l~  478 (614)
                      .++++.+++..|.+.
T Consensus       110 ~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFF  124 (326)
T ss_pred             cCCcchhhhccCcch
Confidence            888888888888765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.28  E-value=0.49  Score=26.39  Aligned_cols=16  Identities=31%  Similarity=0.295  Sum_probs=6.9

Q ss_pred             CCCCEEeCCCCCCCcc
Q 042884           45 TNLEYSTLSGSSLHIS   60 (614)
Q Consensus        45 ~~L~~L~Ls~n~~~~~   60 (614)
                      ++|++|++++|.++..
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4455555555554433

...

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=82.85  E-value=12  Score=38.40  Aligned_cols=158  Identities=15%  Similarity=-0.021  Sum_probs=74.6

Q ss_pred             CCCEEeCcCcccCCCcchhhHhhh--cCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccc--------c
Q 042884           96 SLEHLNMERARIAPNTSFLQIIGE--STPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG--------S  165 (614)
Q Consensus        96 ~L~~L~l~~n~l~~~~~~~~~l~~--~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~--------~  165 (614)
                      .+++++++.|....  .+|..+..  ...-++.++.+...++-+...- +..++.-++++..+++.|....        .
T Consensus       215 ~lteldls~n~~Kd--dip~~~n~~a~~~vl~~ld~s~tgirlD~l~~-~l~~g~~tkl~~~kls~ng~s~skg~Egg~~  291 (553)
T KOG4242|consen  215 WLTELDLSTNGGKD--DIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTS-PLAAGRTTKLTFGKLSRNGTSPSKGEEGGGA  291 (553)
T ss_pred             cccccccccCCCCc--cchhHHHHhhhhhhhhcccccccccchhhccc-ccccccccccchhhhccCCCCcccccccccc
Confidence            46777888877665  55544332  1234666676665554311111 1123344567777777664431        1


Q ss_pred             cCccccCCCCCcEEEcccCCCCCccCCCCCCCC-----CCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccc
Q 042884          166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHL-----TSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEI  240 (614)
Q Consensus       166 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  240 (614)
                      ..+.|..-.++ +|++..+....+-+...+-.+     +.=-.+++..|...+.-....-.+-.++++++.+.|...+..
T Consensus       292 ~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg  370 (553)
T KOG4242|consen  292 EKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEG  370 (553)
T ss_pred             cccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccc
Confidence            22334444566 666665544322221111110     111234555554442211122223345888888888776654


Q ss_pred             cccccCCCCCccceeeec
Q 042884          241 TESYSLTTPNFQLQYLLL  258 (614)
Q Consensus       241 ~~~~~~~~~~~~L~~L~l  258 (614)
                      .... ......+.+.+.+
T Consensus       371 ~~vg-k~~~s~s~r~l~a  387 (553)
T KOG4242|consen  371 GAVG-KRKQSKSGRILKA  387 (553)
T ss_pred             cccc-ceeeccccccccc
Confidence            4333 2333344555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.97  E-value=0.15  Score=45.72  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=18.9

Q ss_pred             CCCccEEEccCC-cCCCCCccchhccccCcEEEccC
Q 042884          349 LPNLISFNISMN-ALDGSIPSSFGNINLLKILDLSN  383 (614)
Q Consensus       349 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~  383 (614)
                      .++|+.|++++| +|+..--..+..+++|+.|.+.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            456666666655 34443334455555666555543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.26  E-value=1.4  Score=25.24  Aligned_cols=17  Identities=29%  Similarity=0.399  Sum_probs=12.2

Q ss_pred             CCCCCEEECCCcccCCC
Q 042884           17 LPSLNTLYLKHNNFTGT   33 (614)
Q Consensus        17 l~~L~~L~Ls~n~i~~~   33 (614)
                      +++|++|+++.|.|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            45777888888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	614
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-30
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-30
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-11
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		7e-06
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		4e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		4e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		4e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		5e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		5e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		5e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		5e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		5e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		6e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 191/421 (45%), Gaps = 60/421 (14%)
Query: 169 CVANMTSLRILDVSSNQLTGSIAS-SPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLK 227
           C A++TSL   D+S N L+G + + + L   + ++ L++S N    P  +      + L+
Sbjct: 98  CSASLTSL---DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 228 IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDG--------------------AT 267
           + D   N ++      + L+    +L++L +S     G                    +T
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 214
Query: 268 FPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL 327
              FL     L+++D+S  K++G+F +  +   T+LK L + ++   GP  +P    K L
Sbjct: 215 GIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSL 271
Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG---------------- 371
           + L ++ N F G IP  +      L   ++S N   G++P  FG                
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 372 ---------NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVL------ 416
                     +  LK+LDLS N+ +GE+PE L      L  L LS+N+  G +L      
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 417 --SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 474
             + L  L L  N   G IPP + N + + +L+LS N L+G IPS+  +L  +  L L  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 475 NKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 534
           N L G+IP +L+ +KTLE   L FN+L+GEIP   +     N  S   N     +P  I 
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 535 R 535
           R
Sbjct: 512 R 512

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 191/421 (45%), Gaps = 60/421 (14%)
Query: 169 CVANMTSLRILDVSSNQLTGSIAS-SPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLK 227
           C A++TSL   D+S N L+G + + + L   + ++ L++S N    P  +      + L+
Sbjct: 95  CSASLTSL---DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 228 IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDG--------------------AT 267
           + D   N ++      + L+    +L++L +S     G                    +T
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 211
Query: 268 FPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL 327
              FL     L+++D+S  K++G+F +  +   T+LK L + ++   GP  +P    K L
Sbjct: 212 GIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSL 268
Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG---------------- 371
           + L ++ N F G IP  +      L   ++S N   G++P  FG                
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 372 ---------NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVL------ 416
                     +  LK+LDLS N+ +GE+PE L      L  L LS+N+  G +L      
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 417 --SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 474
             + L  L L  N   G IPP + N + + +L+LS N L+G IPS+  +L  +  L L  
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 475 NKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 534
           N L G+IP +L+ +KTLE   L FN+L+GEIP   +     N  S   N     +P  I 
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 535 R 535
           R
Sbjct: 509 R 509

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 125/268 (46%), Gaps = 49/268 (18%)
Query: 268 FPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL 327
            P  +     L Y+ ++HT ++G  P++L    +++KTL                     
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFL----SQIKTLV-------------------- 128
Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNIN-LLKILDLSNNQL 386
             LD S N   G +P  I   LPNL+      N + G+IP S+G+ + L   + +S N+L
Sbjct: 129 -TLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 387 TGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 446
           TG+IP   A   + L F+ LS N LEG   S+L G D                    Q +
Sbjct: 187 TGKIPPTFAN--LNLAFVDLSRNMLEGDA-SVLFGSD-----------------KNTQKI 226
Query: 447 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
           +L+ N+L   +       K++  LDL  N++ G +P  L +LK L   +++FNNL GEIP
Sbjct: 227 HLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 507 EWKAQFATFNESSYEGNTFLCGLPLPIC 534
           +       F+ S+Y  N  LCG PLP C
Sbjct: 286 Q-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 427 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV 486
           N L+G IPP I  LT++  L ++H N++G IP   S +K + +LD SYN L+G +P  + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 487 ELKTLEVFSLAFNNLSGEIPEWKAQFA 513
            L  L   +   N +SG IP+    F+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS 173

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 93/233 (39%), Gaps = 46/233 (19%)
Query: 325 KRLRQLDVSNNNFQGHIPLEIG----DILPNLISFNISMNALDGSIPSSFGNINLLKILD 380
           K L ++ V + N Q H   +I          L   +++   L G +PS    +NLLK L 
Sbjct: 246 KGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLV 304
Query: 381 LSNNQ-------------------LTGEIPE-HLAVGCVY----LDFLALSNNSLEGKVL 416
           LS N                    + G + + HL VGC+     L  L LS+N +E    
Sbjct: 305 LSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS-- 362
Query: 417 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476
                    C  L      Q+ NL+ +QTLNLSHN   GL    F     +E LDL++ +
Sbjct: 363 --------DCCSL------QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 477 LNGKIPHQLVE-LKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCG 528
           L+   P    + L  L+V +L +  L        A        + +GN F  G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
           +I D LP +  + ++S N L      SF +   L++LDLS  ++   I +       +L 
Sbjct: 21  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
            L L+ N ++   L   SGL  S  KL+          + P  IG+L  ++ LN++HN +
Sbjct: 80  TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 136
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLNG 479
               +P  FSNL ++E LDLS NK+  
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 21/159 (13%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
           +I D LP +  + ++S N L      SF +   L++LDLS  ++   I +       +L 
Sbjct: 45  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLS 103
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
            L L+ N ++   L   SGL  S  KL+          + P  IG+L  ++ LN++HN +
Sbjct: 104 TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 160
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 485
               +P  FSNL ++E LDLS NK+        ++ HQ+
Sbjct: 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
           +I D LP +  + ++S N L      SF +   L++LDLS  ++   I +       +L 
Sbjct: 22  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 80
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
            L L+ N ++   L   SGL  S  KL+          + P  IG+L  ++ LN++HN +
Sbjct: 81  TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 137
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLN 478
               +P  FSNL ++E LDLS NK+ 
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQ 163

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
           +I D LP +  + ++S N L      SF +   L++LDLS  ++   I +       +L 
Sbjct: 22  KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 80
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
            L L+ N ++   L   SGL  S  KL+          + P  IG+L  ++ LN++HN +
Sbjct: 81  TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 137
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLN 478
               +P  FSNL ++E LDLS NK+ 
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQ 163

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 21/159 (13%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
           +I D LP +  + ++S N L      SF +   L++LDLS  ++   I +       +L 
Sbjct: 21  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLS 79
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
            L L+ N ++   L   SGL  S  KL+          + P  IG+L  ++ LN++HN +
Sbjct: 80  TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 136
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 485
               +P  FSNL ++E LDLS NK+        ++ HQ+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
           +I D LP +  + ++S N L      SF +   L++LDLS  ++   I +       +L 
Sbjct: 23  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 81
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
            L L+ N ++   L   SGL  S  KL+          + P  IG+L  ++ LN++HN +
Sbjct: 82  TLILTGNPIQSLALGAFSGLS-SLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLI 138
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLN 478
               +P  FSNL ++E LDLS NK+ 
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQ 164

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
           +I D LP +  + ++S N L      SF +   L++LDLS  ++   I +       +L 
Sbjct: 23  KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 81
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
            L L+ N ++   L   SGL  S  KL+          + P  IG+L  ++ LN++HN +
Sbjct: 82  TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 138
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLN 478
               +P  FSNL ++E LDLS NK+ 
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQ 164

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 21/159 (13%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
           +I D LP +  + ++S N L      SF +   L++LDLS  ++   I +       +L 
Sbjct: 21  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
            L L+ N ++   L   SGL  S  KL+          + P  IG+L  ++ LN++HN +
Sbjct: 80  TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 136
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 485
               +P  FSNL ++E LDLS NK+        ++ HQ+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 492
           +P ++ N   +  ++LS+N ++ L   +FSN+  + +L LSYN+L    P     LK+L 
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 493 VFSLAFNNLSGEIPE 507
           + SL  N++S  +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	614
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  316 bits (813), Expect = 1e-98
 Identities = 147/542 (27%), Positives = 221/542 (40%), Gaps = 63/542 (11%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
            L SL  L L  N FTG              L    LSG+  + ++     S    L++L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFL--SGACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESL 323

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA---PNTSFLQIIGESTPSLKYLSLSDF 132
           ++S    +G +        + L+ L++     +   P +     +   + SL  L LS  
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-----LTNLSASLLTLDLSSN 378

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIAS 192
             S      L         LQELY  NN   G +P  ++N + L  L +S N L+G+I S
Sbjct: 379 NFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

Query: 193 SPLAHLTSIEELHLSDNHF--RIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
           S L  L+ + +L L  N     IP  L        L+    + N+L  EI          
Sbjct: 437 S-LGSLSKLRDLKLWLNMLEGEIPQEL---MYVKTLETLILDFNDLTGEI---------- 482

Query: 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310
                             P  L +  +L ++ LS+ ++ GE P W+      L  L L N
Sbjct: 483 ------------------PSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSN 523

Query: 311 DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSF 370
           +S +G     +   + L  LD++ N F G IP  +        S  I+ N + G      
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-----SGKIAANFIAGKRYVYI 578

Query: 371 GNINLLKILDLSNN--QLTGEIPEHLAVGCVYLDFLALSNNSLEGKV------LSLLSGL 422
            N  + K    + N  +  G   E L       +   +++    G           +  L
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 423 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 482
           D+S N L G+IP +IG++  +  LNL HN+++G IP    +L+ +  LDLS NKL+G+IP
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 483 HQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPE 542
             +  L  L    L+ NNLSG IPE   QF TF  + +  N  LCG PLP C        
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGYPLPRCDPSNADGY 756

Query: 543 AS 544
           A 
Sbjct: 757 AH 758

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  285 bits (731), Expect = 9e-87
 Identities = 134/506 (26%), Positives = 208/506 (41%), Gaps = 78/506 (15%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLH--ISLLQSIASLFP 70
           S+ SL  L +L+L +++  G+ +          +L    LS +SL   ++ L S+ S   
Sbjct: 72  SLLSLTGLESLFLSNSHINGSVS----GFKCSASLTSLDLSRNSLSGPVTTLTSLGSC-S 126

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLS 130
            LK L++S   ++   +  G     SLE L++         S   I G +          
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL---------SANSISGANVVGWVLSD-- 175

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
                                L+ L    N + G +   V+   +L  LDVSSN  +  I
Sbjct: 176 -----------------GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
               L   ++++ L +S N      S   +   + LK+ +  +N+    I        P 
Sbjct: 217 PF--LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI--------PP 265

Query: 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310
             L+                       L+Y+ L+  K  GE P++L      L  L L  
Sbjct: 266 LPLK----------------------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 311 DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSF 370
           +   G       S   L  L +S+NNF G +P++    +  L   ++S N   G +P S 
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

Query: 371 GNINL-LKILDLSNNQLTGEIPEHLAVGC-VYLDFLALSNNSLEGKV------LSLLSGL 422
            N++  L  LDLS+N  +G I  +L       L  L L NN   GK+       S L  L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 423 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 482
            LS N L G IP  +G+L++++ L L  N L G IP     +K +E+L L +N L G+IP
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 483 HQLVELKTLEVFSLAFNNLSGEIPEW 508
             L     L   SL+ N L+GEIP+W
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKW 509

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  253 bits (649), Expect = 6e-75
 Identities = 122/517 (23%), Positives = 183/517 (35%), Gaps = 128/517 (24%)

Query: 6   DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLH--ISLLQ 63
           D    +     L SL  L L  N+ +G              L++  +SG+ +   + +  
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-- 196

Query: 64  SIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPS 123
              S   +L+ L +S    +      G P                              +
Sbjct: 197 ---SRCVNLEFLDVSSNNFST-----GIPFLGDC------------------------SA 224

Query: 124 LKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSS 183
           L++L +S                             N L G     ++  T L++L++SS
Sbjct: 225 LQHLDIS----------------------------GNKLSGDFSRAISTCTELKLLNISS 256

Query: 184 NQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITES 243
           NQ  G I   P   L S++ L L++N F   I          L   D   N     +   
Sbjct: 257 NQFVGPI---PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV--- 310

Query: 244 YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKL 303
                                    P F      LE + LS    +GE P   L     L
Sbjct: 311 -------------------------PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345

Query: 304 KTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALD 363
           K L L                        S N F G +P  + ++  +L++ ++S N   
Sbjct: 346 KVLDL------------------------SFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 364 GSIPSSFGNINL--LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV------ 415
           G I  +        L+ L L NN  TG+IP  L+  C  L  L LS N L G +      
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
           LS L  L L  N L G IP ++  +  ++TL L  N+LTG IPS  SN  ++  + LS N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 476 KLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF 512
           +L G+IP  +  L+ L +  L+ N+ SG IP      
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  230 bits (588), Expect = 2e-66
 Identities = 99/378 (26%), Positives = 164/378 (43%), Gaps = 53/378 (14%)

Query: 147 CSLMHLQELYKVNNDLR---GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEE 203
           C    +  +   +  L     ++   + ++T L  L +S++ + GS+  S      S+  
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--SGFKCSASLTS 104

Query: 204 LHLSDNHF--RIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSG 261
           L LS N     +      L + S LK  +  +N L+     S  L   +           
Sbjct: 105 LDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS----------- 152

Query: 262 YGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENN--TKLKTLFLVNDSLAGPFRL 319
                           LE +DLS   ++G      + ++   +LK L +  + ++G   +
Sbjct: 153 ----------------LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--V 194

Query: 320 PIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKIL 379
            +     L  LDVS+NNF   IP  +GD    L   +IS N L G    +      LK+L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV-------LSLLSGLDLSCNKLIGH 432
           ++S+NQ  G IP         L +L+L+ N   G++          L+GLDLS N   G 
Sbjct: 253 NISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 433 IPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQLVELKT- 490
           +PP  G+ + +++L LS NN +G +P  T   ++ ++ LDLS+N+ +G++P  L  L   
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 491 LEVFSLAFNNLSGEIPEW 508
           L    L+ NN SG I   
Sbjct: 370 LLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  163 bits (416), Expect = 6e-43
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 19/225 (8%)

Query: 299 NNTKLKTLFLVNDSLAGPFRL---PIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355
            + K+ ++ L +  L   F      + S   L  L +SN++  G +         +L S 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSL 105

Query: 356 NISMNALDGSIPS--SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG 413
           ++S N+L G + +  S G+ + LK L++S+N L         +    L+ L LS NS+ G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 414 KV---------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL 464
                         L  L +S NK+ G +   +     ++ L++S NN +  IP    + 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDC 222

Query: 465 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWK 509
             ++ LD+S NKL+G     +     L++ +++ N   G IP   
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 47/232 (20%), Positives = 75/232 (32%), Gaps = 48/232 (20%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
            +G   SL  L L  N F GT                + +   S  I+        +  +
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIP--------------AAMFKQSGKIAANFIAGKRYVYI 578

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS-LSD 131
           KN  M                                  + L+  G  +  L  LS  + 
Sbjct: 579 KNDGMKK--------------------------ECHGAGNLLEFQGIRSEQLNRLSTRNP 612

Query: 132 FTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
             +++            +   +  L    N L G +P  + +M  L IL++  N ++GSI
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672

Query: 191 ASSPLAHLTSIEELHLSDNHF--RIPISLEPLFNHSRLKIFDAENNELNAEI 240
               +  L  +  L LS N    RIP ++  L   + L   D  NN L+  I
Sbjct: 673 PDE-VGDLRGLNILDLSSNKLDGRIPQAMSAL---TMLTEIDLSNNNLSGPI 720

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  189 bits (482), Expect = 2e-55
 Identities = 78/299 (26%), Positives = 124/299 (41%), Gaps = 39/299 (13%)

Query: 245 SLTTPNFQLQYLLLSSGYGDG-ATFPKFLYHQHDLEYVDLSHTKM-NGEFPNWLLENNTK 302
              T  +++  L LS          P  L +   L ++ +       G  P  +    T+
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQ 102

Query: 303 LKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNAL 362
           L  L++ + +++G     +   K L  LD S N   G +P  I   LPNL+      N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRI 161

Query: 363 DGSIPSSFGNI-NLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV------ 415
            G+IP S+G+   L   + +S N+LTG+IP       + L F+ LS N LEG        
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPP--TFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
                 + L+ N L   +  ++G    +  L+L +N + G +P   + LK + SL++S+N
Sbjct: 220 DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 476 KLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 534
            L G+IP                                F+ S+Y  N  LCG PLP C
Sbjct: 279 NLCGEIPQGGN-------------------------LQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  135 bits (343), Expect = 9e-36
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 24/182 (13%)

Query: 330 LDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGS--IPSSFGNINLLKILDLSN-NQL 386
            D  N  + G +          + + ++S   L     IPSS  N+  L  L +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 387 TGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 446
            G IP  +A                    L+ L  L ++   + G IP  +  +  + TL
Sbjct: 90  VGPIPPAIAK-------------------LTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 447 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF-SLAFNNLSGEI 505
           + S+N L+G +P + S+L ++  +    N+++G IP        L    +++ N L+G+I
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 506 PE 507
           P 
Sbjct: 191 PP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  124 bits (313), Expect = 1e-31
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 20/156 (12%)

Query: 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE--IPEHLAVGCVYLDFLALSNNSL 411
           + +       G +  +      +  LDLS   L     IP  LA    YL+FL +     
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGI-- 86

Query: 412 EGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLD 471
                          N L+G IPP I  LT++  L ++H N++G IP   S +K + +LD
Sbjct: 87  ---------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 472 LSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
            SYN L+G +P  +  L  L   +   N +SG IP+
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  102 bits (258), Expect = 3e-24
 Identities = 48/294 (16%), Positives = 95/294 (32%), Gaps = 91/294 (30%)

Query: 122 PSLKYLS-LSDFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRIL 179
           P++  L+ L    ++  + S  +   L  +  L  L    N L G+LP  ++++ +L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 180 DVSSNQLTGSIASSPLAHLTS-IEELHLSDNHF--RIPISLEPLFNHSRLKIFDAENNEL 236
               N+++G+I  S     +     + +S N    +IP +                    
Sbjct: 155 TFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFA------------------ 195

Query: 237 NAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL 296
                        N  L ++                         DLS   + G+     
Sbjct: 196 -------------NLNLAFV-------------------------DLSRNMLEGDASVLF 217

Query: 297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN 356
             ++   + + L                        + N+    +  ++G    NL   +
Sbjct: 218 G-SDKNTQKIHL------------------------AKNSLAFDLG-KVGL-SKNLNGLD 250

Query: 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS 410
           +  N + G++P     +  L  L++S N L GEIP+         D  A +NN 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN--LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  101 bits (255), Expect = 5e-24
 Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 22/149 (14%)

Query: 365 SIPSSFGNINLL----KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLS 420
            I    GN   L       D  N    G + +        ++ L LS  +L         
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKP------ 65

Query: 421 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNG 479
                       IP  + NL  +  L +   NNL G IP   + L  +  L +++  ++G
Sbjct: 66  ----------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Query: 480 KIPHQLVELKTLEVFSLAFNNLSGEIPEW 508
            IP  L ++KTL     ++N LSG +P  
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  197 bits (502), Expect = 7e-55
 Identities = 103/511 (20%), Positives = 186/511 (36%), Gaps = 38/511 (7%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLF-PS 71
                 +L TL L HN  + T   T        NL+   LS + +     + +      S
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGT---QVQLENLQELLLSNNKIQALKSEELDIFANSS 172

Query: 72  LKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSD 131
           LK L +S  ++     G  F     L  L +   ++ P+ +    +  +  S++ LSLS+
Sbjct: 173 LKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 132 FTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIA 191
             LST S+           +L  L    N+L        A +  L    +  N +    +
Sbjct: 232 SQLSTTSNTTF--LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 192 SSPLAHLTSIEELHLSDNHFRIPISL--------EPLFNHSRLKIFDAENNELNAEITES 243
            S L  L ++  L+L  +  +  ISL                L+  + E+N++    +  
Sbjct: 290 HS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

Query: 244 YSLTTPNFQLQYLLLSSGYGDGATFPKFLYH---QHDLEYVDLSHTKMNGEFPNWLLENN 300
           ++       L+YL LS+ +    T     +       L  ++L+  K++    +      
Sbjct: 349 FTGLI---NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWL 404

Query: 301 TKLKTLFLVNDSLAGPF-RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM 359
             L+ L L  + +            + + ++ +S N +           +P+L    +  
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRR 463

Query: 360 NALDG--SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLS 417
            AL    S PS F  +  L ILDLSNN +     + L  G   L+ L L +N+L      
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQHNNLA----- 517

Query: 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
                 L  +   G     +  L+ +  LNL  N    +    F +L  ++ +DL  N L
Sbjct: 518 -----RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 478 NGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508
           N           +L+  +L  N ++    + 
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  186 bits (475), Expect = 3e-51
 Identities = 87/506 (17%), Positives = 172/506 (33%), Gaps = 47/506 (9%)

Query: 12  QSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPS 71
            +   L +L  L L +N      +       N ++L+   LS + +         ++   
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAI-GR 196

Query: 72  LKNLSMSYCEVNGVVRGQGFPHF--KSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSL 129
           L  L ++  ++   +  +        S+ +L++       N+        +   LK+ +L
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS------NSQLSTTSNTTFLGLKWTNL 250

Query: 130 SDFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTG 188
           +   LS N+ + + +     L  L+  +   N+++      +  + ++R L++  +    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 189 SIA--------SSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELN-AE 239
           SI+              L  +E L++ DN     I          LK     N+  +   
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 240 ITESYSLTTPNFQLQYLLLS----SGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW 295
           +T    ++  +  L  L L+    S     A           LE +DL   ++  E    
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDA-----FSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 296 LLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQG--HIPLEIGDILPNLI 353
                  +  ++L  +      R        L++L +     +     P      L NL 
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-LRNLT 483

Query: 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVY-------LDFLAL 406
             ++S N +          +  L+ILDL +N L          G +Y       L  L L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 407 SNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPST 460
            +N  +       K L  L  +DL  N L         N   +++LNL  N +T +    
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 461 FS-NLKHIESLDLSYNKLNGKIPHQL 485
           F    +++  LD+ +N  +       
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCESIA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  182 bits (464), Expect = 1e-49
 Identities = 90/513 (17%), Positives = 167/513 (32%), Gaps = 76/513 (14%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
           +      L +L +  N  +       +       L+   L  + L     ++ A    +L
Sbjct: 44  NFTRYSQLTSLDVGFNTISK---LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNL 99

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLS 130
             L +    +  +     F   K+L  L++    ++     + +Q       +L+ L LS
Sbjct: 100 TELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQ-----LENLQELLLS 153

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
           +  +    S  L   + +   L++L   +N ++   P C   +  L  L +++ QL  S+
Sbjct: 154 NNKIQALKSEEL--DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 191 ASSPLA--HLTSIEELHLSDNHFR--IPISLEPLFNHSRLKIFDAENNELNAEITESYSL 246
                     TSI  L LS++        +   L   + L + D   N LN         
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL-KWTNLTMLDLSYNNLNVVG------ 264

Query: 247 TTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTL 306
                                          LEY  L +  +   F +  L     ++ L
Sbjct: 265 ----------------------NDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYL 301

Query: 307 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSI 366
            L                +   +  +S  +            L  L   N+  N + G  
Sbjct: 302 NL---------------KRSFTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIK 345

Query: 367 PSSFGNINLLKILDLSNNQLTGEIPEHLA---VGCVYLDFLALSNNSLEG------KVLS 417
            + F  +  LK L LSN+  +     +     +    L  L L+ N +          L 
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

Query: 418 LLSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476
            L  LDL  N++   +  Q    L  I  + LS+N    L  ++F+ +  ++ L L    
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 477 LNG--KIPHQLVELKTLEVFSLAFNNLSGEIPE 507
           L      P     L+ L +  L+ NN++    +
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (416), Expect = 3e-43
 Identities = 74/456 (16%), Positives = 157/456 (34%), Gaps = 82/456 (17%)

Query: 62  LQSI-ASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIG 118
           L  +   L  ++  L++++ ++  +     F  +  L  L++    I+            
Sbjct: 16  LTQVPDDLPTNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPELC----- 69

Query: 119 ESTPSLKYLSLSDFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLR 177
           +  P LK L+L       N  S++ D+      +L EL+ ++N ++           +L 
Sbjct: 70  QKLPMLKVLNLQH-----NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 178 ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAENNEL 236
            LD+S N L+ +   +    L +++EL LS+N  + +      +F +S LK  +  +N++
Sbjct: 125 TLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 237 NAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL 296
                                           P   +    L  + L++ ++       L
Sbjct: 184 KEFS----------------------------PGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI-LPNLISF 355
                                     ++  +R L +SN+            +   NL   
Sbjct: 216 CLE----------------------LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV 415
           ++S N L+     SF  +  L+   L  N +       L  G   + +L L  +      
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRS------ 306

Query: 416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
               +   +S   L          L  ++ LN+  N++ G+  + F+ L +++ L LS +
Sbjct: 307 ---FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 476 KLNGKIPHQLV----ELKTLEVFSLAFNNLSGEIPE 507
             + +              L + +L  N +S    +
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  135 bits (342), Expect = 1e-33
 Identities = 88/477 (18%), Positives = 168/477 (35%), Gaps = 47/477 (9%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           +  S+  L L ++  + T+ TT   L  +TNL    LS ++L++    S A L P L+  
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGL-KWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYF 277

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYL-SLSDFTL 134
            + Y  +  +          ++ +LN++R+    + S   +      S ++L  L    +
Sbjct: 278 FLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 135 STNS-SRILDRGLCSLMHLQELYKVNNDLRG----SLPWCVANMTSLRILDVSSNQLTGS 189
             N    I       L++L+ L   N+        +  +     + L IL+++ N+++  
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 190 IASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTP 249
            + +  + L  +E L L  N     ++ +       +       N+       S++L   
Sbjct: 397 ESDA-FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP- 454

Query: 250 NFQLQYLLLSS-GYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTL-- 306
              LQ L+L      +  + P       +L  +DLS+  +     + +LE   KL+ L  
Sbjct: 455 --SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDL 511

Query: 307 ------FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMN 360
                  L   +  G     +     L  L++ +N F         D L  L   ++ +N
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD-LFELKIIDLGLN 570

Query: 361 ALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLS 420
            L+    S F N   LK L+L  N +T    +                    G     L+
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF------------------GPAFRNLT 612

Query: 421 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLI----PSTFSNLKHIESLDLS 473
            LD+  N            +  I   + +   L+       P  +     +   D S
Sbjct: 613 ELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFP-VRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (289), Expect = 5e-27
 Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 23/182 (12%)

Query: 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQ 385
                D S+      +P    D+  N+   N++ N L     ++F   + L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 386 LTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQT 445
           ++   PE                       L +L  L+L  N+L           T +  
Sbjct: 61  ISKLEPE------------LCQK-------LPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101

Query: 446 LNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI 505
           L+L  N++  +  + F   K++ +LDLS+N L+       V+L+ L+   L+ N +    
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 506 PE 507
            E
Sbjct: 162 SE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.1 bits (245), Expect = 1e-21
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 10/139 (7%)

Query: 376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKL 429
            ++ D S+ +LT ++P+ L      L+   L++N L           S L+ LD+  N +
Sbjct: 6   HEVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 489
               P     L  ++ LNL HN L+ L   TF+   ++  L L  N +     +  V+ K
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 490 TLEVFSLAFNNLSGEIPEW 508
            L    L+ N LS      
Sbjct: 122 NLITLDLSHNGLSSTKLGT 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 33/212 (15%), Positives = 54/212 (25%), Gaps = 54/212 (25%)

Query: 1   NVKIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSL-HI 59
            V +++          L +L  L L +NN           L     LE   L  ++L  +
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIAN---INDDMLEGLEKLEILDLQHNNLARL 519

Query: 60  SLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGE 119
               +       LK LS                                           
Sbjct: 520 WKHANPGGPIYFLKGLS------------------------------------------- 536

Query: 120 STPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRIL 179
               L  L+L           +       L  L+ +    N+L         N  SL+ L
Sbjct: 537 ---HLHILNLESNGFDEIPVEVFK----DLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

Query: 180 DVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
           ++  N +T            ++ EL +  N F
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (490), Expect = 1e-53
 Identities = 99/538 (18%), Positives = 189/538 (35%), Gaps = 42/538 (7%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
           S  S P L  L L                 + ++L    L+G+ +    L + + L  SL
Sbjct: 47  SFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-SSL 102

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMER---ARIAPNTSFLQIIGESTPSLKYLSL 129
           + L      +  +       H K+L+ LN+             F      +  +L++L L
Sbjct: 103 QKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDL 156

Query: 130 SDFTLSTNSSRILDRGLCSL-MHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTG 188
           S   + +     L   L  + +    L    N +    P     +  L  L + +N  + 
Sbjct: 157 SSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL 214

Query: 189 SIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHS-----RLKIFDAENNELNAEITES 243
           ++  + +  L  +E   L    FR   +LE     +      L I +     L+  + + 
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 244 YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKL 303
             L      +    L S   +      + +     ++++L + K    FP   L++  +L
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNF---GWQHLELVNCKFGQ-FPTLKLKSLKRL 330

Query: 304 KTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN--NFQGHIPLEIGDILPNLISFNISMNA 361
                   +      LP      L  LD+S N  +F+G           +L   ++S N 
Sbjct: 331 TFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNG 384

Query: 362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV------ 415
           +  ++ S+F  +  L+ LD  ++ L       + +    L +L +S+             
Sbjct: 385 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 416 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 474
           LS L  L ++ N    +  P I   L  +  L+LS   L  L P+ F++L  ++ L++S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 475 NKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSY-EGNTFLCGLPL 531
           N            L +L+V   + N++     +    F +         N F C    
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  164 bits (418), Expect = 6e-44
 Identities = 84/507 (16%), Positives = 159/507 (31%), Gaps = 61/507 (12%)

Query: 7   GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA 66
             KL +   +L +L  L L  N       T  + LH    L  S L  S   ++ +Q  A
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMNFIQPGA 196

Query: 67  SLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKY 126
                L  L++     +  V          LE   +         +  +    +   L  
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 127 LSLSDFTLSTN--SSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSN 184
           L++ +F L+        +      L ++     V+  +        +     + L++ + 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNC 314

Query: 185 QLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESY 244
           +        P   L S++ L  + N      S   L     L+  D   N L+ +   S 
Sbjct: 315 KFGQF----PTLKLKSLKRLTFTSNKGGNAFSEVDL---PSLEFLDLSRNGLSFKGCCSQ 367

Query: 245 SLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLK 304
           S       L+YL LS  +    T          LE++D  H+ +       +  +   L 
Sbjct: 368 SDFGTT-SLKYLDLS--FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 305 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG 364
            L + +      F    +    L  L ++ N+FQ +   +I   L NL   ++S   L+ 
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDL 424
             P++F +++ L++L++S+N                                        
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------------------------------ 514

Query: 425 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL-KHIESLDLSYNKLNGKIPH 483
                          L  +Q L+ S N++         +    +  L+L+ N       H
Sbjct: 515 -------------KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 484 Q--LVELKTLEVFSLAFNNLSGEIPEW 508
           Q  L  +K      +    +    P  
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  161 bits (410), Expect = 8e-43
 Identities = 80/471 (16%), Positives = 153/471 (32%), Gaps = 64/471 (13%)

Query: 57  LHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQI 116
           + ++  +   +L  S KNL +S+  +  +     F  F  L+ L++             I
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLS------RCEIQTI 67

Query: 117 IGES---TPSLKYLSLSDFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVAN 172
              +      L  L L+      N    +       L  LQ+L  V  +L     + + +
Sbjct: 68  EDGAYQSLSHLSTLILTG-----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 173 MTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR--IPISLEPLFNHSRLKIFD 230
           + +L+ L+V+ N +         ++LT++E L LS N  +      L  L     + + +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ---MPLLN 179

Query: 231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG 290
              +     +           +L  L                          L +   + 
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKL-------------------------TLRNNFDSL 214

Query: 291 EFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH---KRLRQLDVSNNNFQGHIPLEIGD 347
                 ++    L+   LV         L        + L  L +       ++   + D
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA-YLDYYLDD 273

Query: 348 I------LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYL 401
           I      L N+ SF++    ++     S+      + L+L N +     P         L
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKFGQ-FPTLKLKSLKRL 330

Query: 402 DFLALSNNSLEGKV-LSLLSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGLIP 458
            F +    +   +V L  L  LDLS N L   G         T ++ L+LS N +   + 
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS 389

Query: 459 STFSNLKHIESLDLSYNKLNGKIPHQ-LVELKTLEVFSLAFNNLSGEIPEW 508
           S F  L+ +E LD  ++ L         + L+ L    ++  +        
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (301), Expect = 1e-28
 Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 14/210 (6%)

Query: 309 VNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS 368
                   +++P +     + LD+S N  +           P L   ++S   +      
Sbjct: 12  YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDG 70

Query: 369 SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGL 422
           ++ +++ L  L L+ N +        + G   L  L     +L          L  L  L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 423 DLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE----SLDLSYNKL 477
           +++ N +    +P    NLT ++ L+LS N +  +  +    L  +     SLDLS N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 478 NGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
           N   P    E++ L   +L  N  S  + +
Sbjct: 190 NFIQPGAFKEIR-LHKLTLRNNFDSLNVMK 218

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.4 bits (230), Expect = 9e-20
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 10/133 (7%)

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLI 430
                       +IP++L      LD   LS N L             L  LDLS  ++ 
Sbjct: 10  ITYQCMELNFY-KIPDNLPFSTKNLD---LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 431 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 490
                   +L+ + TL L+ N +  L    FS L  ++ L      L       +  LKT
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 491 LEVFSLAFNNLSG 503
           L+  ++A N +  
Sbjct: 126 LKELNVAHNLIQS 138

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  183 bits (466), Expect = 3e-50
 Identities = 70/542 (12%), Positives = 156/542 (28%), Gaps = 85/542 (15%)

Query: 1   NVKIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHIS 60
             K+ +     + + +  S         ++  T         +F++L    ++      S
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE-DFSDLIKDCINSDPQQKS 174

Query: 61  LLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGES 120
           + +S   +      +      +  V   +       L    M       N+ F+      
Sbjct: 175 IKKSS-RITLKDTQIGQLSNNITFV--SKAVMRLTKLRQFYMG------NSPFVAENICE 225

Query: 121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILD 180
               +    +         +  D    +L  L ++   N      LP  +  +  +++++
Sbjct: 226 AWENENSEYA------QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 181 VSSNQLTGSIAS-------SPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAE 232
           V+ N+              +       I+ +++  N+ +  P+    L    +L + +  
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECL 338

Query: 233 NNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEF 292
            N+L  ++    S                                L  ++L++ ++    
Sbjct: 339 YNQLEGKLPAFGSEI-----------------------------KLASLNLAYNQITE-I 368

Query: 293 PNWLLENNTKLKTLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI--- 348
           P        +++ L   ++ L   P      S   +  +D S N            +   
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 349 ---LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV------GCV 399
                N+ S N+S N +       F   + L  ++L  N LT      L           
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488

Query: 400 YLDFLALSNNSLEG-------KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH-- 450
            L  + L  N L           L  L G+DLS N      P Q  N + ++   + +  
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQR 547

Query: 451 ----NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
               N      P   +    +  L +  N +   +  ++     + V  +  N       
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDL 604

Query: 507 EW 508
            +
Sbjct: 605 SY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  172 bits (438), Expect = 2e-46
 Identities = 74/506 (14%), Positives = 170/506 (33%), Gaps = 57/506 (11%)

Query: 40  ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEH 99
            L++   +   +L G      +  +I  L   L+ L++     +G    +     K +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQL-TELEVLALGS---HGEKVNERLFGPKGISA 131

Query: 100 LNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRI-LDRGLCSLMHLQELYKV 158
              +  +      + +   +  P   +  L    ++++  +  + +     +   ++ ++
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 159 NNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLE 218
           +N++   +   V  +T LR   + ++                 E    +  +    +  +
Sbjct: 192 SNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICE----AWENENSEYAQQYKTEDLKWD 246

Query: 219 PLFNHSRLKIFDAENNELNAEITES-YSLTTPNFQLQYLLLSS-------GYGDGATFPK 270
            L     L   +  N     ++     +L     ++Q + ++           D      
Sbjct: 247 NL---KDLTDVEVYNCPNLTKLPTFLKALP----EMQLINVACNRGISGEQLKDDWQALA 299

Query: 271 FLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQL 330
                  ++ + + +  +        L+   KL  L  + + L G       S  +L  L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358

Query: 331 DVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINL--LKILDLSNNQLTG 388
           +++ N     IP         + + + + N L   IP+ F   ++  +  +D S N++  
Sbjct: 359 NLAYNQITE-IPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 389 EIPEHLA------VGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKL------- 429
              ++           + +  + LSNN +           S LS ++L  N L       
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPS-TFSNLKHIESLDLSYNKLNGKIPHQLVEL 488
           +        N   + +++L  N LT L      + L ++  +DLSYN  +   P Q +  
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535

Query: 489 KTLEVFSL------AFNNLSGEIPEW 508
            TL+ F +        N    E PE 
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEG 561

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  157 bits (398), Expect = 4e-41
 Identities = 66/515 (12%), Positives = 156/515 (30%), Gaps = 80/515 (15%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
           S+ S   +  L L+    +G        +   T LE   L      ++          + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRV---PDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF 132
            +                                      + +   +  P   +  L   
Sbjct: 133 MSDEQKQKMRMH----------------------------YQKTFVDYDPREDFSDLIKD 164

Query: 133 TLSTNSSRI-LDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIA 191
            ++++  +  + +     +   ++ +++N++   +   V  +T LR   + ++       
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 192 SSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITES-YSLTTPN 250
                     E    +  +    +  + L     L   +  N     ++     +L    
Sbjct: 224 CE----AWENENSEYAQQYKTEDLKWDNL---KDLTDVEVYNCPNLTKLPTFLKALP--- 273

Query: 251 FQLQYLLLSS-------GYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKL 303
            ++Q + ++           D             ++ + + +  +        L+   KL
Sbjct: 274 -EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 304 KTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALD 363
             L  + + L G       S  +L  L+++ N     IP         + + + + N L 
Sbjct: 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL- 389

Query: 364 GSIPSSFGNINL--LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSG 421
             IP+ F   ++  +  +D S N++     ++                         +S 
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN------------FDPLDPTPFKGINVSS 437

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL-------IPSTFSNLKHIESLDLSY 474
           ++LS N++           + + ++NL  N LT +           F N   + S+DL +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 475 NKLNGKIP--HQLVELKTLEVFSLAFNNLSGEIPE 507
           NKL   +    +   L  L    L++N+ S   P 
Sbjct: 498 NKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 17/166 (10%), Positives = 44/166 (26%), Gaps = 14/166 (8%)

Query: 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG 413
           +FN  ++        S  +   +  L L     +G +P+ +      L+ LAL ++  + 
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKV 119

Query: 414 ----------KVLSLLSGLDLSCNKLIGHIPPQIG--NLTRIQTLNLSHNNLTGLIPSTF 461
                                                + + +    ++ +     I  + 
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 462 SNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
                   +    N +   +   ++ L  L  F +  +    E   
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC 224

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  180 bits (459), Expect = 2e-48
 Identities = 72/522 (13%), Positives = 145/522 (27%), Gaps = 84/522 (16%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
                LN   L  +           +  +  +L+ + +   +  I+ +         L+ 
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNT--SFLQIIGESTPSLKYLSLSDF 132
           +  +                   E  N + A+   N   S+  +       L  + L + 
Sbjct: 453 IYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNL-----KDLTDVELYN- 500

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRG---------SLPWCVANMTSLRILDVSS 183
                +   L   L  L  LQ L    N              L         ++I  +  
Sbjct: 501 ---CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 184 NQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITES 243
           N L    AS+ L  +  +  L    N  R    LE    + +L     + N++  EI E 
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYNQIE-EIPED 613

Query: 244 YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKL 303
                                      F      +E +  SH K+      +  ++   +
Sbjct: 614 ---------------------------FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

Query: 304 KTLFLVNDSLAG-----PFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS 358
            ++    + +          +  +       + +S N  Q             + +  +S
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT-GSPISTIILS 705

Query: 359 MNALD-------GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL 411
            N +             ++ N  LL  +DL  N+LT    +  A    YL  + +S N  
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765

Query: 412 EG-----------KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPST 460
                        K   +    D   N+++   P  I     +  L +  N++  +    
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825

Query: 461 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
              L     LD++ N         +       ++ L ++   
Sbjct: 826 TPQLYI---LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  179 bits (456), Expect = 4e-48
 Identities = 81/574 (14%), Positives = 173/574 (30%), Gaps = 99/574 (17%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
           ++G L  L  L    ++ T +      E       + S      + +   +        L
Sbjct: 342 AIGQLTELKVLSFGTHSETVSGRLFGDEE---LTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST---PSLKYLSL 129
               +     + + R       K    ++++  +I   T+ +  I ++      L+ +  
Sbjct: 399 NLSDLLQ---DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455

Query: 130 SD---------------FTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMT 174
           ++                +         +    +L  L ++   N      LP  + ++ 
Sbjct: 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 175 SLRILDVSSNQLTGSIASSP--------LAHLTSIEELHLSDNHFR-IPISLEPLFNHSR 225
            L+ L+++ N+   +                   I+  ++  N+    P S   L    +
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS-LQKMVK 574

Query: 226 LKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSH 285
           L + D  +N++   +    +                                L  + L +
Sbjct: 575 LGLLDCVHNKVR-HLEAFGTNVK-----------------------------LTDLKLDY 604

Query: 286 TKMNGEFPNWLLENNTKLKTLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNFQGHIPLE 344
            ++  E P        +++ L   ++ L   P      S   +  +D S N         
Sbjct: 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRN 662

Query: 345 IGDILP-----NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV--- 396
           I   +      N  +  +S N +       F   + +  + LSNN +T  IPE+      
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD 721

Query: 397 ----GCVYLDFLALSNNSLEG-------KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQT 445
                   L  + L  N L           L  LS +D+S N      P Q  N ++++ 
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKA 780

Query: 446 LNLSH------NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN 499
             + H      N +    P+  +    +  L +  N +  K+  +L     L +  +A N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADN 837

Query: 500 NL-SGEIPE-WKAQFATFNESSYEGNTFLCGLPL 531
              S ++        A      Y+    + G   
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  169 bits (430), Expect = 1e-44
 Identities = 77/524 (14%), Positives = 162/524 (30%), Gaps = 70/524 (13%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
            + +   +  L L      G        +   T L+  +    S  +   +       + 
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPD---AIGQLTELKVLSFGTHSETV-SGRLFGDEELTP 373

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF 132
                    +    +     + + L   ++ +  I  N     I  +S  SLK   + + 
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN- 432

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIAS 192
              TN    + + +  L  LQ +Y  N+                   +    +   +   
Sbjct: 433 --LTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEEL 485

Query: 193 SPLAHLTSIEELHLSDNHF--RIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
           S  ++L  + ++ L +     ++P  L  L     L+  +   N   +        T   
Sbjct: 486 S-WSNLKDLTDVELYNCPNMTQLPDFLYDL---PELQSLNIACNRGISAAQLKADWT--- 538

Query: 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310
                                      ++   + +  +     +  L+   KL  L  V+
Sbjct: 539 ----------------RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 311 DSLAGPFRLP-IHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSS 369
           + +     L    ++ +L  L +  N  +  IP +       +     S N L   IP+ 
Sbjct: 583 NKVRH---LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637

Query: 370 FGNINL--LKILDLSNNQLTGEIPEHLA----VGCVYLDFLALSNNSLEG------KVLS 417
           F   ++  +  +D S N++  E             +    + LS N ++          S
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 418 LLSGLDLSCNKL-------IGHIPPQIGNLTRIQTLNLSHNNLTGLIPS-TFSNLKHIES 469
            +S + LS N +       +        N   + T++L  N LT L      + L ++ +
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 470 LDLSYNKLNGKIPHQLVELKTLEVFSL------AFNNLSGEIPE 507
           +D+SYN  +   P Q +    L+ F +        N +  + P 
Sbjct: 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  147 bits (372), Expect = 3e-37
 Identities = 60/406 (14%), Positives = 119/406 (29%), Gaps = 57/406 (14%)

Query: 123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVS 182
            +  LSL+ F         +   +  L  L+ L    +    S         +  + +  
Sbjct: 324 RVTGLSLAGFGAKG----RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 183 SNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITE 242
            +++        L +   +    L  +       ++P+   SR+ + D +   L   IT 
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT- 438

Query: 243 SYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTK 302
                                      K +     L+ +  +++                
Sbjct: 439 ------------------------FISKAIQRLTKLQIIYFANSPFTY------DNIAVD 468

Query: 303 LKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNAL 362
            +              L   + K L  +++ N      +P  + D LP L S NI+ N  
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRG 527

Query: 363 DG---------SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG 413
                       +         ++I  +  N L            V L  L   +N +  
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

Query: 414 ----KVLSLLSGLDLSCNKLIGHIPPQIGNLTR-IQTLNLSHNNLTGLIPST-FSNLKHI 467
                    L+ L L  N++   IP      T  ++ L  SHN L  +       ++  +
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

Query: 468 ESLDLSYNKLNGKIPHQLV-----ELKTLEVFSLAFNNLSGEIPEW 508
            S+D SYNK+  +  +        +       +L++N +     E 
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.9 bits (223), Expect = 7e-19
 Identities = 48/391 (12%), Positives = 108/391 (27%), Gaps = 75/391 (19%)

Query: 8   SKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIAS 67
           ++L     + P +   Y+ +NN        +  L     L       + +    L++  +
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEE--FPASASLQKMVKLGLLDCVHNKVRH--LEAFGT 593

Query: 68  LFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLK 125
               L +L + Y ++  +           +E L     ++   PN    +    S   + 
Sbjct: 594 N-VKLTDLKLDYNQIEEIPEDF-CAFTDQVEGLGFSHNKLKYIPNIFNAK----SVYVMG 647

Query: 126 YLSLSDFTLSTNSSRIL-DRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSN 184
            +  S   + +    I         ++   +    N+++       A  + +  + +S+N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 185 QLT------GSIASSPLAHLTSIEELHLSDNHF-RIPISLEPLFNHSRLKIFDAENNELN 237
            +T               +   +  + L  N    +            L   D   N  +
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR-ATTLPYLSNMDVSYNCFS 766

Query: 238 AEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLL 297
                                        +FP    +   L+   + H            
Sbjct: 767 -----------------------------SFPTQPLNSSQLKAFGIRH--------QRDA 789

Query: 298 ENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI 357
           E N  L+                I +   L QL + +N+ +  +  +   + P L   +I
Sbjct: 790 EGNRILRQWPTG-----------ITTCPSLIQLQIGSNDIR-KVDEK---LTPQLYILDI 834

Query: 358 SMNAL-DGSIPSSFGNI-NLLKILDLSNNQL 386
           + N      + S    I   + +L     Q 
Sbjct: 835 ADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 12/86 (13%), Positives = 27/86 (31%)

Query: 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504
             N   +           N   +  L L+     G++P  + +L  L+V S   ++ +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 505 IPEWKAQFATFNESSYEGNTFLCGLP 530
              +  +  T + S    +       
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYK 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  172 bits (439), Expect = 1e-46
 Identities = 79/464 (17%), Positives = 147/464 (31%), Gaps = 35/464 (7%)

Query: 66  ASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPS 123
            +L  S + L  S+  +  +     F    +L  L++ R +I      +F     +S   
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTF-----QSQHR 82

Query: 124 LKYLSLSDFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVS 182
           L  L L+      N    + +  L     L+ L+ +   +       + N  +L  L + 
Sbjct: 83  LDTLVLTA-----NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137

Query: 183 SNQLTGSIASSPLAHLTSIEELHLSDNHFR--IPISLEPLFNHSRLKIFDAENNELNAEI 240
           SN ++ SI          ++ L   +N         +  L   + L +    N+     I
Sbjct: 138 SNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-----I 191

Query: 241 TESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQ-HDLEYVDLSHTKMNGEFPNWLLEN 299
                    +   Q L           F          L              P      
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 300 -NTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS 358
               ++++ L             H    L++LD++  +    +P  +   L  L    +S
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLS 309

Query: 359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----- 413
            N  +     S  N   L  L +  N    E+          L  L LS++ +E      
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 414 ---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIES 469
              + LS L  L+LS N+ +           +++ L+L+   L      S F NL  ++ 
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 470 LDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA 513
           L+LS++ L+         L  L+  +L  N+      +      
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  170 bits (434), Expect = 6e-46
 Identities = 95/509 (18%), Positives = 182/509 (35%), Gaps = 33/509 (6%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
           +   L +L  L L           T     +   L+   L+ + L      +++    +L
Sbjct: 52  TFSRLINLTFLDLTRCQIYWIHEDT---FQSQHRLDTLVLTANPLIFMAETALSGP-KAL 107

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF 132
           K+L      ++ +       + K+LE L +    I   +S     G  T  LK L   + 
Sbjct: 108 KHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHI---SSIKLPKGFPTEKLKVLDFQNN 163

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTG-SIA 191
            +   S   +   L        L    ND+   +     +    + L+    Q       
Sbjct: 164 AIHYLSKEDMS-SLQQA-TNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 192 SSPLAHLTSIEELHLSDNHF-RIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
               + + S+      D     I  ++        ++  + + +      + ++   +  
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS-- 278

Query: 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLV- 309
             LQ L L++ +   +  P  L     L+ + LS  K           N   L  L +  
Sbjct: 279 -GLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKG 334

Query: 310 NDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGSIP 367
           N          + + + LR+LD+S+++ +         +  L +L S N+S N       
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 368 SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSG 421
            +F     L++LDL+  +L  +  +        L  L LS++ L+         L  L  
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 422 LDLSCNKL---IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
           L+L  N            +  L R++ L LS  +L+ +    F++LK +  +DLS+N+L 
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 479 GKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
                 L  LK +   +LA N++S  +P 
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (263), Expect = 7e-24
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 12/213 (5%)

Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLT 387
           +  +  N      IP   G +  +      S N L     ++F  +  L  LDL+  Q+ 
Sbjct: 15  KTYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 388 GEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQIGNLT 441
               +        LD L L+ N L             L  L      +       + N  
Sbjct: 71  WIHEDTFQ-SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNL 501
            +++L L  N+++ +        + ++ LD   N ++      +  L+     SL  N  
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 502 S-GEIPEWKAQFATFNESSYEGNTFLCGLPLPI 533
               I       A F   ++ G   L  +   +
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 95.9 bits (239), Expect = 6e-21
 Identities = 71/418 (16%), Positives = 151/418 (36%), Gaps = 43/418 (10%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           ++ SL     +  +    +    + L    ++E   L       ++  +    F  L+ L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVESINLQKHYFF-NISSNTFHCFSGLQEL 283

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFT 133
            ++   ++ +  G       +L+ L +   +       S       + PSL +LS+   T
Sbjct: 284 DLTATHLSELPSG--LVGLSTLKKLVLSANKFENLCQISA-----SNFPSLTHLSIKGNT 336

Query: 134 LSTNSSRILDRGLCSLMHLQELYKVNNDLRGS--LPWCVANMTSLRILDVSSNQLTGSIA 191
                  +    L +L +L+EL   ++D+  S      + N++ L+ L++S N+   S+ 
Sbjct: 337 KRLE---LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLK 392

Query: 192 SSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNF 251
           +        +E L L+    ++  +  P  N   LK+ +  ++ L+    + +       
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP--- 449

Query: 252 QLQYLLLS--SGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLV 309
            LQ+L L               L     LE + LS   ++    +    +   +  + L 
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLS 508

Query: 310 NDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSS 369
           ++ L     +   SH +   L++++N+    I   +  IL    + N+  N LD +    
Sbjct: 509 HNRLTS-SSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCTC--- 563

Query: 370 FGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN 427
             NI  L+    +  +L           C     L         + + L   + LSC+
Sbjct: 564 -SNIYFLEWYKENMQKLEDTED----TLCENPPLL---------RGVRLSD-VTLSCS 606

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.6 bits (215), Expect = 6e-18
 Identities = 59/309 (19%), Positives = 108/309 (34%), Gaps = 27/309 (8%)

Query: 8   SKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIAS 67
           S+L   +  L +L  L L  N F      +     NF +L + ++ G++  + L      
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQIS---ASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 68  LFPSLKNLSMSYCEVNGV-VRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSL 124
              +L+ L +S+ ++           +   L+ LN+           +F     +  P L
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-----KECPQL 402

Query: 125 KYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSN 184
           + L L+   L    ++       +L  L+ L   ++ L  S       + +L+ L++  N
Sbjct: 403 ELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 185 QLTGSIASSP--LAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITE 242
                       L  L  +E L LS       I      +   +   D  +N L +   E
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 243 SYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKM-----NGEFPNWLL 297
           + S    + +  YL L+S +      P  L        ++L    +     N  F  W  
Sbjct: 519 ALS----HLKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYK 573

Query: 298 ENNTKLKTL 306
           EN  KL+  
Sbjct: 574 ENMQKLEDT 582

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 10/224 (4%)

Query: 3   KIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLL 62
            I         + +L  L +L L +N      +  T+       LE   L+ + L +   
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPL---SLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 63  QSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTP 122
           QS       LK L++S+  ++       F    +L+HLN++               ++  
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVS 182
            L+ L LS   LS+           SL  +  +   +N L  S    ++++  +  L+++
Sbjct: 477 RLEILVLSFCDLSSIDQHAFT----SLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLA 531

Query: 183 SNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRL 226
           SN ++  I  S L  L+    ++L  N      S        + 
Sbjct: 532 SNHIS-IILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKE 574

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (429), Expect = 2e-45
 Identities = 75/510 (14%), Positives = 154/510 (30%), Gaps = 64/510 (12%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
             L  L+ L L  N     +  +       T+LE      + L       I  L  +LK 
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGS---FSGLTSLENLVAVETKLASLESFPIGQL-ITLKK 132

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTL 134
           L++++  ++       F +  +L H+++             I       L+     + +L
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLS------YNYIQTITVNDLQFLRENPQVNLSL 186

Query: 135 --STNSSRILDRGLCSLMHLQELYKVNNDLRGSLPW-CVANMTSLRILDVSSNQLTG--- 188
             S N    +       + L EL    N    ++   C+ N+  L +  +   +      
Sbjct: 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 189 --SIASSPLAHLTSIEELHLSDNHFRI-PISLEPLFNHSRLKIFDAENNELNAEITESYS 245
                 S +  L  +        +       +      + +         +         
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-----YLE 301

Query: 246 LTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKT 305
               +F+ Q L +              +    L+ + L+  K +  F    L +      
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPTLDLPF----LKSLTLTMNKGSISFKKVALPS------ 351

Query: 306 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI-LPNLISFNISMNALDG 364
                                L  LD+S N           D+   +L   ++S N    
Sbjct: 352 ---------------------LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-I 389

Query: 365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGL-- 422
            + ++F  +  L+ LD  ++ L         +    L +L +S  + +     +  GL  
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 423 ----DLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
                ++ N    +    +  N T +  L+LS   L  +    F  L  ++ L++S+N L
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 478 NGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
                    +L +L     +FN +      
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (395), Expect = 9e-41
 Identities = 73/473 (15%), Positives = 138/473 (29%), Gaps = 57/473 (12%)

Query: 7   GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA 66
             KL     +L +L  + L +N          Q L     +   +L  S   I  +Q  A
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL-SLDMSLNPIDFIQDQA 200

Query: 67  SLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKY 126
                L  L++     +  +      +   L    +         +           L  
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 127 LSLSDFTLSTNSSRILDRG-LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQ 185
           +++ +F L+  +    D      L ++  +      +       V      + L +   Q
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQ 318

Query: 186 LTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYS 245
           L       P   L  ++ L L+ N   I            L   D   N L+     SYS
Sbjct: 319 LK----QFPTLDLPFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 246 LTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKT 305
               N  L++L LS  +              +L+++D  H+ +          +  KL  
Sbjct: 372 DLGTN-SLRHLDLS--FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 306 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGS 365
           L +   +    F         L  L ++ N+F+ +    +     NL   ++S   L+  
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 366 IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLS 425
               F  ++ L++L++S+N L      H                                
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYN------------------------------ 518

Query: 426 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
                         L  + TL+ S N +           K +   +L+ N + 
Sbjct: 519 -------------QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (395), Expect = 1e-40
 Identities = 93/508 (18%), Positives = 167/508 (32%), Gaps = 56/508 (11%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
           S  +   L  L L                H   +L    L+G+ +      S + L  SL
Sbjct: 51  SFSNFSELQWLDLSRCEIETIEDKA---WHGLHHLSNLILTGNPIQSFSPGSFSGL-TSL 106

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMER---ARIAPNTSFLQIIGESTPSLKYLSL 129
           +NL     ++  +          +L+ LN+             F      +  +L ++ L
Sbjct: 107 ENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYF-----SNLTNLVHVDL 160

Query: 130 SDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGS 189
           S   + T +   L     +      L    N +          +  L  L +  N  + +
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSN 219

Query: 190 IASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTP 249
           I  + L +L  +    L    F          +   L+IF+    E          +T  
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEF---------KDERNLEIFEPSIMEGLC------DVTID 264

Query: 250 NFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLV 309
            F+L Y    S            +   ++  + L+   +        +  + K ++L ++
Sbjct: 265 EFRLTYTNDFSDD------IVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSII 315

Query: 310 NDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSS 369
              L      P      L+ L ++ N             LP+L   ++S NAL  S   S
Sbjct: 316 RCQLKQ---FPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCS 369

Query: 370 FGNINL--LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-------KVLSLLS 420
           + ++    L+ LDLS N     I     +G   L  L   +++L+          L  L 
Sbjct: 370 YSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 421 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS-TFSNLKHIESLDLSYNKLNG 479
            LD+S              LT + TL ++ N+      S  F+N  ++  LDLS  +L  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 480 KIPHQLVELKTLEVFSLAFNNLSGEIPE 507
                   L  L++ +++ NNL      
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  138 bits (350), Expect = 7e-35
 Identities = 77/463 (16%), Positives = 149/463 (32%), Gaps = 60/463 (12%)

Query: 62  LQSI-ASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIG 118
           L  +   +  S KN+ +S+  +  +     F +F  L+ L++ R  I    + ++     
Sbjct: 23  LSKVPDDIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAW----- 76

Query: 119 ESTPSLKYLSLSDFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLR 177
                L  L L+      N            L  L+ L  V   L     + +  + +L+
Sbjct: 77  HGLHHLSNLILTG-----NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 178 ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR--IPISLEPLFN-HSRLKIFDAENN 234
            L+V+ N +      +  ++LT++  + LS N+ +      L+ L          D   N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 235 ELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPN 294
                I           +L  L L   +         L +   L    L   +   E   
Sbjct: 192 ----PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 295 WLLENNT-------KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGD 347
            + E +         +    L   +      +  H    +  + ++  + +    LE   
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVP 304

Query: 348 ILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALS 407
                 S +I    L             LK L L+ N+ +           +    +AL 
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGS-----------ISFKKVALP 350

Query: 408 NNSLEGKVLSLLSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK 465
           +          LS LDLS N L   G           ++ L+LS N    ++ + F  L+
Sbjct: 351 S----------LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLE 399

Query: 466 HIESLDLSYNKLNGKIPHQ-LVELKTLEVFSLAFNNLSGEIPE 507
            ++ LD  ++ L         + L+ L    +++ N   +   
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 364 GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLS 417
           GS+      +  +      + +L+ ++P+ +      +D   LS N L+          S
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPSSTKNID---LSFNPLKILKSYSFSNFS 56

Query: 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
            L  LDLS  ++          L  +  L L+ N +    P +FS L  +E+L     KL
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 478 NGKIPHQLVELKTLEVFSLAFNNLSG 503
                  + +L TL+  ++A N +  
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 416 LSLLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 474
           + ++  +   C ++ +  +P  I   +  + ++LS N L  L   +FSN   ++ LDLS 
Sbjct: 8   IEVVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR 65

Query: 475 NKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508
            ++          L  L    L  N +    P  
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  150 bits (381), Expect = 2e-38
 Identities = 107/627 (17%), Positives = 202/627 (32%), Gaps = 88/627 (14%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA-SLFPSLKN 74
           +LP+L  L L  +                 +L    L    L  ++L+        +L  
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDA---FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDF 132
           L +S  ++  +     F    SL+ ++    +I          +      +L + SL+  
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL---QGKTLSFFSLAAN 184

Query: 133 TLSTNSSRILDRGLCSL--MHLQELYKVNNDLRGSLPWCVAN------------MTSLRI 178
           +L +  S    + +     M L+ L    N     +    +N               +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 179 LDVSSNQLTGSIASSPLAHL--TSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL 236
                + +      +  A L  +S+  L LS       ++         LK+ +   N++
Sbjct: 245 AGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKI 302

Query: 237 NA-EITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW 295
           N       Y L      LQ L LS        +    Y    + Y+DL    +     + 
Sbjct: 303 NKIADEAFYGLD----NLQVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNHIA-IIQDQ 356

Query: 296 LLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355
             +   KL+TL L +++L       IH    +  + +S N       + +  I       
Sbjct: 357 TFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKL-----VTLPKINLTANLI 406

Query: 356 NISMNALDG-SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK 414
           ++S N L+   I      +  L+IL L+ N+ +    +        L+ L L  N L+  
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 415 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 474
             + L                    L+ +Q L L+HN L  L P  FS+L  +  L L+ 
Sbjct: 467 WETELC-------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 475 NKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP-- 532
           N+L     + L     LE+  ++ N L    P+    F + +      N F+C   L   
Sbjct: 514 NRLTVLSHNDL--PANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTF 568

Query: 533 ------------------ICRSPATTPEASIGNERDDNLIDMD-----NFFITFTTSYVI 569
                              C  P +    S+ +   +   + +      F +    +  +
Sbjct: 569 INWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTL 628

Query: 570 VIFGIVVVLYVNPYWRCRWFYFVEMWI 596
            +F + ++        C   Y     +
Sbjct: 629 TLFLMTILTVTKFRGFCFICYKTAQRL 655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  137 bits (347), Expect = 4e-34
 Identities = 92/467 (19%), Positives = 162/467 (34%), Gaps = 44/467 (9%)

Query: 62  LQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA---PNTSFLQIIG 118
           L  +  +  + + L +S+  +  V     FP  + L+ L +            +F     
Sbjct: 16  LTQVPQVLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAF----- 69

Query: 119 ESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL--PWCVANMTSL 176
            + P+L+ L L    +      +       L HL EL      L  ++       N+ +L
Sbjct: 70  RNLPNLRILDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 177 RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI--PISLEPLFNHSRLKIFDAENN 234
             LD+S NQ+           L S++ +  S N   +     LEPL     L  F    N
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-QGKTLSFFSLAAN 184

Query: 235 ELNAEITESYSLTTPNFQ---LQYLLLSS-----------GYGDGATFPKFLYHQHDLEY 280
            L + ++  +      F+   L+ L +S                  +    L   H +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 281 VDLSHTKMNGEFPNWLLEN--NTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQ 338
                  +  +           + ++ L L +  +         + K L+ L+++ N   
Sbjct: 245 AGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

Query: 339 GHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGC 398
             I  E    L NL   N+S N L     S+F  +  +  +DL  N +   I +      
Sbjct: 304 -KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFL 361

Query: 399 VYLDFLALSNNSLEG-KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL- 456
             L  L L +N+L     +  +  + LS NKL+  +P           ++LS N L  L 
Sbjct: 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINLTA---NLIHLSENRLENLD 417

Query: 457 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAFNNLS 502
           I      + H++ L L+ N+ +     Q      +LE   L  N L 
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  134 bits (340), Expect = 3e-33
 Identities = 97/526 (18%), Positives = 171/526 (32%), Gaps = 95/526 (18%)

Query: 17  LPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLS 76
           L +   L L  N                  +  S+                    L+ L 
Sbjct: 23  LNTTERLLLSFN--------------YIRTVTASSFPF--------------LEQLQLLE 54

Query: 77  MSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTL 134
           +        +  + F +  +L  L++  ++I      +F     +    L  L L    L
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-----QGLFHLFELRLYFCGL 109

Query: 135 STNSSRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQLTGSIASS 193
           S   + + D    +L  L  L    N +R   L      + SL+ +D SSNQ+   +   
Sbjct: 110 S--DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEH 166

Query: 194 PLAHLT--SIEELHLSDNHFRIPISLEPL-----FNHSRLKIFDAENNELNAEITESYSL 246
            L  L   ++    L+ N     +S++       F +  L+I D   N    +IT ++S 
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

Query: 247 TTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLEN--NTKLK 304
                Q   L+L+                H +         +  +           + ++
Sbjct: 227 AISKSQAFSLILA----------------HHIMGAGFGFHNIK-DPDQNTFAGLARSSVR 269

Query: 305 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG 364
            L L +  +         + K L+ L+++ N     I  E    L NL   N+S N L  
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-KVLSLLSGLD 423
              S+F  +  +  +DL  N +   I +        L  L L +N+L     +  +  + 
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 424 LSCNKL-------------------IGHIPPQ--IGNLTRIQTLNLSHNNLTGLIPS-TF 461
           LS NKL                   + ++     +  +  +Q L L+ N  +      T 
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 462 SNLKHIESLDLSYNKLNGKIPHQLVE-----LKTLEVFSLAFNNLS 502
           S    +E L L  N L      +L       L  L+V  L  N L+
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 406 LSNNSLEG--KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLI-PSTF 461
               +L    +VL+    L LS N  I  +       L ++Q L L        I    F
Sbjct: 11  YRFCNLTQVPQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 462 SNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI 505
            NL ++  LDL  +K+    P     L  L    L F  LS  +
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 43/230 (18%), Positives = 72/230 (31%), Gaps = 19/230 (8%)

Query: 10  LLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLF 69
            L ++  +PS+  ++L  N                       LS + L    +       
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPK-------INLTANLIHLSENRLENLDILYFLLRV 425

Query: 70  PSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARI--APNTSFLQIIGESTPSLKYL 127
           P L+ L ++    +     Q      SLE L +    +  A  T     + E    L+ L
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 128 SLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLT 187
            L+   L++    +       L  L+ L   +N L   L        +L ILD+S NQL 
Sbjct: 486 YLNHNYLNSLPPGVFS----HLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLL 539

Query: 188 GSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELN 237
               +       S+  L ++ N F     L    N              +
Sbjct: 540 ----APNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPAD 585

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 38/233 (16%), Positives = 70/233 (30%), Gaps = 35/233 (15%)

Query: 9   KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASL 68
            +L  +  +P L  L L  N F+  +   T       +LE   L  + L ++    +   
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQT--PSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 69  FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
                                 F     L+ L +    +    S    +     +L+ LS
Sbjct: 475 V---------------------FEGLSHLQVLYLNHNYL---NSLPPGVFSHLTALRGLS 510

Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTG 188
           L+   L+  S   L        +L+ L    N L    P       SL +LD++ N+   
Sbjct: 511 LNSNRLTVLSHNDL------PANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFIC 561

Query: 189 SIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEIT 241
               S   +  +   + ++     I       F+   L     E  +    + 
Sbjct: 562 ECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLK 614

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  144 bits (366), Expect = 4e-37
 Identities = 93/506 (18%), Positives = 170/506 (33%), Gaps = 37/506 (7%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
           S  S P L  L L                 + ++L    L+G+ +  SL     S   SL
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGA---YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 102

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMER---ARIAPNTSFLQIIGESTPSLKYLSL 129
           + L      +  +       H K+L+ LN+             F      +  +L++L L
Sbjct: 103 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDL 156

Query: 130 SDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGS 189
           S   + +     L       +    L    N +   +         L  L + +N  + +
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 190 IASSPLAHLTSIEELHLSDNHFRI-----PISLEPLFNHSRLKIFDAENNELNAEITESY 244
           +  + +  L  +E   L    FR            L     L I +     L+  + +  
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 245 SLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLK 304
            L      +    L S   +      + +    LE V+        +FP   L++   LK
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG----QFPTLKLKS---LK 328

Query: 305 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQG-HIPLEIGDILPNLISFNISMNALD 363
            L   ++     F         L  LD+S N         +      +L   ++S N + 
Sbjct: 329 RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 364 GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLS 417
            ++ S+F  +  L+ LD  ++ L       + +    L +L +S+             LS
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 418 LLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476
            L  L ++ N    +  P I   L  +  L+LS   L  L P+ F++L  ++ L+++ N+
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 477 LNGKIPHQLVELKTLEVFSLAFNNLS 502
           L          L +L+   L  N   
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  119 bits (299), Expect = 2e-28
 Identities = 70/418 (16%), Positives = 139/418 (33%), Gaps = 44/418 (10%)

Query: 94  FKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCS-LM 150
             S ++L++    +    + SF        P L+ L LS         + ++ G    L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSF-----PELQVLDLSR-----CEIQTIEDGAYQSLS 76

Query: 151 HLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNH 210
           HL  L    N ++       + ++SL+ L      L  S+ + P+ HL +++EL+++ N 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135

Query: 211 FRIPISLEPLFNH-SRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFP 269
            +    L   F++ + L+  D  +N++   I  +         L  L L           
Sbjct: 136 IQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 270 KFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRL---PIHSHKR 326
              + +  L  + L +   +       ++    L+   LV         L      + + 
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQL 386
           L  L +                          ++     I   F  +  +    L +  +
Sbjct: 254 LCNLTIEEFRLA-------------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 387 TGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 446
                     G  +L+ +           L  L  L  + NK          +L  ++ L
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFL 352

Query: 447 NLSHNNLT--GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
           +LS N L+  G    +      ++ LDLS+N +   +    + L+ LE      +NL 
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 67/358 (18%), Positives = 105/358 (29%), Gaps = 49/358 (13%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYST---LSGSSLHISLLQSIASLFPSL 72
            L  L    L    F         +      L   T      + L   L   I  LF  L
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD-IIDLFNCL 281

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF 132
            N+S        + R + F +    +HL +       N  F Q       SLK L+ +  
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLEL------VNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLR--GSLPWCVANMTSLRILDVSSNQLTGSI 190
                 S +       L  L+ L    N L   G         TSL+ LD+S N +  ++
Sbjct: 336 KGGNAFSEV------DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
            SS    L  +E L    ++ +         +   L   D  +                 
Sbjct: 389 -SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT---------------- 431

Query: 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310
              +             F         LE + ++       F   +      L  L L  
Sbjct: 432 -HTRVA-----------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 311 DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS 368
             L        +S   L+ L++++N  +  +P  I D L +L    +  N  D S P 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 8e-17
 Identities = 45/212 (21%), Positives = 74/212 (34%), Gaps = 26/212 (12%)

Query: 301 TKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMN 360
              K L L  + L         S   L+ LD+S    Q  I       L +L +  ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 361 ALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLS 420
            +      +F  ++ L+ L      L                   L N  +    L  L 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLAS-----------------LENFPIGH--LKTLK 127

Query: 421 GLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH----IESLDLSYN 475
            L+++ N +    +P    NLT ++ L+LS N +  +  +    L        SLDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 476 KLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
            +N  I     +   L   +L  N  S  + +
Sbjct: 188 PMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 12/133 (9%)

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLI 430
                       +IP++L      LD   LS N L             L  LDLS  + I
Sbjct: 10  ITYQCMELNFY-KIPDNLPFSTKNLD---LSFNPLRHLGSYSFFSFPELQVLDLSRCE-I 64

Query: 431 GHIPPQ-IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 489
             I      +L+ + TL L+ N +  L    FS L  ++ L      L       +  LK
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 490 TLEVFSLAFNNLS 502
           TL+  ++A N + 
Sbjct: 125 TLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 423 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 482
                     IP  +      + L+LS N L  L   +F +   ++ LDLS  ++     
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 483 HQLVELKTLEVFSLAFNNLSGEIPEW 508
                L  L    L  N +       
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGA 95

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 44/187 (23%), Positives = 63/187 (33%), Gaps = 11/187 (5%)

Query: 3   KIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLL 62
            +       QS     SL  L L  N       T +        LE+     S+L     
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI----TMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 63  QSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTP 122
            S+     +L  L +S+        G  F    SLE L M         +FL  I     
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQ--ENFLPDIFTELR 470

Query: 123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVS 182
           +L +L LS   L   S    +    SL  LQ L   +N L+         +TSL+ + + 
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFN----SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

Query: 183 SNQLTGS 189
           +N    S
Sbjct: 527 TNPWDCS 533

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (354), Expect = 7e-37
 Identities = 79/375 (21%), Positives = 142/375 (37%), Gaps = 37/375 (9%)

Query: 133 TLSTNSSRILD-RGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIA 191
           TL+T  + I        L            +   +      + S+  L V+  ++  SI 
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SI- 59

Query: 192 SSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNF 251
              + +LT++E L+L+ N       + PL N  +L       N++  +I+   +LT    
Sbjct: 60  -QGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT---- 110

Query: 252 QLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVND 311
            L+ L L     D  +    L +   +  ++L       +     L N T L  L +   
Sbjct: 111 NLRELYL---NEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTES 165

Query: 312 SLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG 371
            +      PI +   L  L ++ N  +   PL     L +L  F   +N +    P    
Sbjct: 166 KVKDVT--PIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP--VA 218

Query: 372 NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCN 427
           N+  L  L + NN++T   P         L +L +  N +      K L+ L  L++  N
Sbjct: 219 NMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275

Query: 428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 487
           + I  I   + NL+++ +L L++N L          L ++ +L LS N +    P  L  
Sbjct: 276 Q-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331

Query: 488 LKTLEVFSLAFNNLS 502
           L  ++    A   + 
Sbjct: 332 LSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  122 bits (309), Expect = 9e-31
 Identities = 86/428 (20%), Positives = 168/428 (39%), Gaps = 85/428 (19%)

Query: 50  STLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAP 109
           +TL+     I+ +   A L        +    V  VV        +S+  L +   ++  
Sbjct: 3   ATLATLPAPINQIFPDADL-AEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV-- 56

Query: 110 NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWC 169
                     S   ++YL+                      +L+ L    N +    P  
Sbjct: 57  ---------ASIQGIEYLT----------------------NLEYLNLNGNQITDISP-- 83

Query: 170 VANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF 229
           ++N+  L  L + +N++T     S L +LT++ EL+L++++      + PL N +++   
Sbjct: 84  LSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNIS---DISPLANLTKMYSL 137

Query: 230 DAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMN 289
           +   N   ++++   ++T     L YL ++            + +  DL  + L++ ++ 
Sbjct: 138 NLGANHNLSDLSPLSNMT----GLNYLTVTE---SKVKDVTPIANLTDLYSLSLNYNQIE 190

Query: 290 GEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDIL 349
              P   L + T L       + +      P+ +  RL  L + NN      PL     L
Sbjct: 191 DISP---LASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSPLA---NL 242

Query: 350 PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN 409
             L    I  N +  S  ++  ++  LK+L++ +NQ++              D   L+N 
Sbjct: 243 SQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQIS--------------DISVLNN- 285

Query: 410 SLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 469
                 LS L+ L L+ N+L       IG LT + TL LS N++T + P   ++L  ++S
Sbjct: 286 ------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337

Query: 470 LDLSYNKL 477
            D +   +
Sbjct: 338 ADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (258), Expect = 5e-24
 Identities = 70/377 (18%), Positives = 147/377 (38%), Gaps = 67/377 (17%)

Query: 11  LQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFP 70
           + +   L S+  L +           + Q +   TNLEY  L+G+   I+ +  +++L  
Sbjct: 37  VVTQEELESITKLVVAGEKV-----ASIQGIEYLTNLEYLNLNGN--QITDISPLSNL-V 88

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLS 130
            L NL +   ++  +       +  +L  L +    I    S +  +   T  +  L+L 
Sbjct: 89  KLTNLYIGTNKITDI---SALQNLTNLRELYLNEDNI----SDISPLANLT-KMYSLNLG 140

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
                ++ S      L ++  L  L    + ++   P  +AN+T L  L ++ NQ+    
Sbjct: 141 ANHNLSDLS-----PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-- 191

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
             SPLA LTS+       N       + P+ N +RL      NN++  +++   +L+   
Sbjct: 192 -ISPLASLTSLHYFTAYVNQIT---DITPVANMTRLNSLKIGNNKIT-DLSPLANLS--- 243

Query: 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310
                                      L ++++   +++       +++ TKLK L + +
Sbjct: 244 --------------------------QLTWLEIGTNQISDINA---VKDLTKLKMLNVGS 274

Query: 311 DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSF 370
           + ++      +++  +L  L ++NN         IG  L NL +  +S N +    P   
Sbjct: 275 NQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDIRP--L 329

Query: 371 GNINLLKILDLSNNQLT 387
            +++ +   D +N  + 
Sbjct: 330 ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.9 bits (185), Expect = 9e-15
 Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 15/156 (9%)

Query: 358 SMNALDGSIPSSFGNINL--LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-- 413
           ++  L   I   F + +L       L    +T  + +        +  L ++   +    
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKVASIQ 60

Query: 414 --KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLD 471
             + L+ L  L+L+ N+ I  I P + NL ++  L +  N +T    S   NL ++  L 
Sbjct: 61  GIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELY 116

Query: 472 LSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
           L+ + ++   P  L  L  +   +L  N+   ++  
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.8 bits (177), Expect = 9e-14
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 28/228 (12%)

Query: 9   KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASL 68
             L  + ++  LN L +  +            + N T+L   +L+ +   I  +  +ASL
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKD-----VTPIANLTDLYSLSLNYN--QIEDISPLASL 198

Query: 69  FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
             SL   +    ++  +       +   L  L +   +I  + S L     +   L +L 
Sbjct: 199 -TSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKIT-DLSPL----ANLSQLTWLE 249

Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTG 188
           +    +S  +       +  L  L+ L   +N +       + N++ L  L +++NQL  
Sbjct: 250 IGTNQISDIN------AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGN 301

Query: 189 SIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL 236
                 +  LT++  L LS NH      + PL + S++   D  N  +
Sbjct: 302 EDM-EVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  128 bits (323), Expect = 5e-32
 Identities = 99/511 (19%), Positives = 184/511 (36%), Gaps = 77/511 (15%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           +L       L   N T T +       +   +    L    L I  +  +  L  +L  +
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS-----QTDLDQVTT--LQADRLGIKSIDGVEYL-NNLTQI 73

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
           + S  ++  +       +   L  + M   +IA  T        +  +L  L+L +  ++
Sbjct: 74  NFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPL-----ANLTNLTGLTLFNNQIT 125

Query: 136 TNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPL 195
                     L +L +L  L   +N +       ++ +TSL+ L   +          PL
Sbjct: 126 DIDP------LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD----LKPL 173

Query: 196 AHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY 255
           A+LT++E L +S N       +  L   + L+   A NN+++ +IT    LT     L  
Sbjct: 174 ANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQIS-DITPLGILT----NLDE 225

Query: 256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAG 315
           L L+            L    +L  +DL++ +++   P   L   TKL  L L  + ++ 
Sbjct: 226 LSLNGNQL---KDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN 279

Query: 316 PFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINL 375
               P+     L  L+++ N  +   P+     L NL    +  N +    P    ++  
Sbjct: 280 IS--PLAGLTALTNLELNENQLEDISPISN---LKNLTYLTLYFNNISDISP--VSSLTK 332

Query: 376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPP 435
           L+ L   NN+++              D  +L+N       L+ ++ L    N++    P 
Sbjct: 333 LQRLFFYNNKVS--------------DVSSLAN-------LTNINWLSAGHNQISDLTP- 370

Query: 436 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI-PHQLVELKTLEVF 494
            + NLTRI  L L+    T    +  +N+      +   N     I P  + +  +    
Sbjct: 371 -LANLTRITQLGLNDQAWTNAPVNYKANVSI---PNTVKNVTGALIAPATISDGGSYTEP 426

Query: 495 SLAFNNLSGEIPEWKAQFATFNESSYEGNTF 525
            + +N  S    E    F+          TF
Sbjct: 427 DITWNLPS-YTNEVSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  126 bits (318), Expect = 3e-31
 Identities = 95/476 (19%), Positives = 174/476 (36%), Gaps = 57/476 (11%)

Query: 11  LQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFP 70
             S   L  + TL             +   +    NL    ++ S+  ++ +  + +L  
Sbjct: 39  TVSQTDLDQVTTLQADRLGI-----KSIDGVEYLNNLTQ--INFSNNQLTDITPLKNL-T 90

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLS 130
            L ++ M+  ++  +       +  +L  L +   +I    + +  +   T +L  L LS
Sbjct: 91  KLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQI----TDIDPLKNLT-NLNRLELS 142

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
             T+S  S+      L  L  LQ+L    N +    P  +AN+T+L  LD+SSN+++   
Sbjct: 143 SNTISDISA------LSGLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSNKVSD-- 191

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
             S LA LT++E L  ++N       + PL   + L       N+L  +I    SLT   
Sbjct: 192 -ISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLK-DIGTLASLT--- 243

Query: 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310
             L  L L+    +  +    L     L  + L   +++   P   L   T L  L L  
Sbjct: 244 -NLTDLDLA---NNQISNLAPLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNE 296

Query: 311 DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSF 370
           + L      PI + K L  L +  NN     P+     L  L       N +  S  SS 
Sbjct: 297 NQLEDI--SPISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFYNNKV--SDVSSL 349

Query: 371 GNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG---KVLSLLSGLDLSCN 427
            N+  +  L   +NQ++   P         +  L L++ +         + +S  +   N
Sbjct: 350 ANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 428 KLIGHIPP-QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 482
                I P  I +       +++ N  +     ++       ++       +G + 
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNLPSYTNEVSY-TFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (304), Expect = 2e-29
 Identities = 77/340 (22%), Positives = 141/340 (41%), Gaps = 38/340 (11%)

Query: 171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFD 230
             +       +    +T ++       L  +  L       +   S++ +   + L   +
Sbjct: 21  TALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQIN 74

Query: 231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG 290
             NN+L  +IT   +LT    +L  +L+++           L +  +L  + L + ++  
Sbjct: 75  FSNNQLT-DITPLKNLT----KLVDILMNNNQ---IADITPLANLTNLTGLTLFNNQITD 126

Query: 291 EFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP 350
             P   L+N T L  L L +++++      +     L+QL    N      PL     L 
Sbjct: 127 IDP---LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKPLA---NLT 177

Query: 351 NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS 410
            L   +IS N +  S  S    +  L+ L  +NNQ++   P         LD L+L+ N 
Sbjct: 178 TLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQ 232

Query: 411 LEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH 466
           L+       L+ L+ LDL+ N++    P  +  LT++  L L  N ++ + P   + L  
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288

Query: 467 IESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
           + +L+L+ N+L    P  +  LK L   +L FNN+S   P
Sbjct: 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  108 bits (272), Expect = 2e-25
 Identities = 69/336 (20%), Positives = 124/336 (36%), Gaps = 37/336 (11%)

Query: 175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENN 234
            L    ++ +     I       L    +  L   +    +S   L    ++    A+  
Sbjct: 2   PLGSATITQDTPINQI--FTDTALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRL 56

Query: 235 ELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPN 294
            +   I     L      L  +  S    +  T    L +   L  + +++ ++    P 
Sbjct: 57  GIK-SIDGVEYLN----NLTQINFS---NNQLTDITPLKNLTKLVDILMNNNQIADITP- 107

Query: 295 WLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS 354
             L N T L  L L N+ +      P+ +   L +L++S+N       L     L +L  
Sbjct: 108 --LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALS---GLTSLQQ 160

Query: 355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG- 413
            +      D        N+  L+ LD+S+N+++      LA     L+ L  +NN +   
Sbjct: 161 LSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLA-KLTNLESLIATNNQISDI 214

Query: 414 ---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 470
               +L+ L  L L+ N+L       + +LT +  L+L++N ++ L P   S L  +  L
Sbjct: 215 TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270

Query: 471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
            L  N+++   P  L  L  L    L  N L    P
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP 304

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  128 bits (323), Expect = 1e-31
 Identities = 82/486 (16%), Positives = 162/486 (33%), Gaps = 46/486 (9%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           +  +L  L LK +             ++  +LE+  LS + L          L  SLK L
Sbjct: 48  ACANLQVLILKSSRINTIEGDA---FYSLGSLEHLDLSDNHLSSLSSSWFGPL-SSLKYL 103

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA---PNTSFLQIIGESTPSLKYLSLSDF 132
           ++       +     FP+  +L+ L +             F  +      SL  L +   
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-----TSLNELEIKAL 158

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIAS 192
           +L    S+ L     S+  +  L    ++    L      ++S+R L++    L      
Sbjct: 159 SLRNYQSQSLK----SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQF 213

Query: 193 SPLAHLTSIEELHLSDNH---------FRIPISLEPLFNHSRLKIFDAENNELNAEITES 243
           SPL        +                 +   L  +   S ++  D   N L       
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 244 YSLTTPNFQLQYLLLS----SGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLEN 299
             + +   +++ + +       +               ++ + + ++K+    P    ++
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQH 332

Query: 300 NTKLKTLFLVN---DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI--LPNLIS 354
              L+ L L                 +   L+ L +S N+ +  +      +  L NL S
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTS 391

Query: 355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLE-- 412
            +IS N     +P S      ++ L+LS+  +   +   +      LD   +SNN+L+  
Sbjct: 392 LDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLD---VSNNNLDSF 446

Query: 413 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
              L  L  L +S NKL   +P        +  + +S N L  +    F  L  ++ + L
Sbjct: 447 SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

Query: 473 SYNKLN 478
             N  +
Sbjct: 505 HTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (318), Expect = 6e-31
 Identities = 91/514 (17%), Positives = 167/514 (32%), Gaps = 79/514 (15%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSI-ASLFPSLKN 74
           S  +      +  +FT                                SI + L  ++K+
Sbjct: 3   SCDASGVCDGRSRSFT--------------------------------SIPSGLTAAMKS 30

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDF 132
           L +S+ ++   +         +L+ L ++ +RI      +F      S  SL++L LSD 
Sbjct: 31  LDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAF-----YSLGSLEHLDLSDN 84

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQLTGSIA 191
            LS+    +       L  L+ L  + N  +   +     N+T+L+ L + + +    I 
Sbjct: 85  HLSS----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 192 SSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELN-------AEITESY 244
               A LTS+ EL +     R     + L +   +       +E           ++   
Sbjct: 141 RIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 245 SLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL------LE 298
            L   +  L     S    D  + P            D S  ++       L       +
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 299 NNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS 358
           + T                 L       +R+L +       +    +  +L  +    + 
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVE 318

Query: 359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV--GCVYLDFLALSNNSLEG--- 413
            + +     S   ++  L+ LDLS N +  E  ++ A       L  L LS N L     
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 414 -----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 468
                  L  L+ LD+S N     +P       +++ LNLS   +  +       L+   
Sbjct: 379 TGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV-- 435

Query: 469 SLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
            LD+S N L+      L  L+ L    ++ N L 
Sbjct: 436 -LDVSNNNLD-SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 67/387 (17%), Positives = 133/387 (34%), Gaps = 31/387 (8%)

Query: 12  QSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPS 71
                L SLN L +K  +        +Q L +  ++ + TL  S     LL+  A +  S
Sbjct: 142 IDFAGLTSLNELEIKALSLR---NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSS 197

Query: 72  LKNLSMSYCEVNGVVRGQ--GFPHFKSLEHLNMERARIAPNT-SFLQIIGESTPSLKYLS 128
           ++ L +    +                ++ L    + +   + + L  +      L  + 
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 129 LSDFTL-------STNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
             D TL        + S  + + G    + ++ L+     L   L    + +  ++ + V
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNH--SRLKIFDAENNELNAE 239
            ++++   +  S   HL S+E L LS+N                  L+      N L   
Sbjct: 318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-S 375

Query: 240 ITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLEN 299
           + ++  +      L  L +S         P        + +++LS T +       +   
Sbjct: 376 MQKTGEILLTLKNLTSLDIS--RNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP-- 430

Query: 300 NTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM 359
              L+ L + N++L       +    RL++L +S N  +    L    + P L+   IS 
Sbjct: 431 -QTLEVLDVSNNNLD---SFSLFLP-RLQELYISRNKLKT---LPDASLFPVLLVMKISR 482

Query: 360 NALDGSIPSSFGNINLLKILDLSNNQL 386
           N L       F  +  L+ + L  N  
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.3 bits (232), Expect = 4e-20
 Identities = 34/185 (18%), Positives = 67/185 (36%), Gaps = 10/185 (5%)

Query: 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQL 386
           ++ LD+S N    +I         NL    +  + ++     +F ++  L+ LDLS+N L
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 387 TGEIPEHLAVGCVYLDFLALSNNSLEG-------KVLSLLSGLDLSCNKLIGHIPPQ-IG 438
           +  +          L +L L  N  +          L+ L  L +   +    I      
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAF 498
            LT +  L +   +L      +  +++ I  L L  ++    +      L ++    L  
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 499 NNLSG 503
            NL+ 
Sbjct: 206 TNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481
            D         IP  +     +++L+LS N +T +         +++ L L  +++N   
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 482 PHQLVELKTLEVFSLAFNNLSGEIPEW 508
                 L +LE   L+ N+LS     W
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSW 93

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (299), Expect = 3e-29
 Identities = 76/381 (19%), Positives = 148/381 (38%), Gaps = 40/381 (10%)

Query: 107 IAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRG-LCSLMHLQELYKVNNDLRGS 165
           + P     + I  +          D  +   +  +       +L + + +   N+ +R  
Sbjct: 3   VKPRQPEYKCIDSNLQYD--CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60

Query: 166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSR 225
               + +   + +L+++  Q+   I +   A+  +I++L++  N  R  +      N   
Sbjct: 61  PAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL 118

Query: 226 LKIFDAENNELNAEITESYSLTTPNFQLQYLLLSS---GYGDGATFPKFLYHQHDLEYVD 282
           L +   E N+L+  +     +     +L  L +S+      +  TF         L+ + 
Sbjct: 119 LTVLVLERNDLS-SL--PRGIFHNTPKLTTLSMSNNNLERIEDDTF----QATTSLQNLQ 171

Query: 283 LSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIP 342
           LS  ++       L+ +   L    +  + L+      +     + +LD S+N+    + 
Sbjct: 172 LSSNRLT-HVDLSLIPS---LFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR 221

Query: 343 LEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
              G +   L    +  N L  +  +   N   L  +DLS N+L  +I  H  V    L+
Sbjct: 222 ---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLE 275

Query: 403 FLALSNNSLE-----GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLI 457
            L +SNN L      G+ +  L  LDLS N  + H+        R++ L L HN++  L 
Sbjct: 276 RLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 458 PSTFSNLKHIESLDLSYNKLN 478
            ST   LK+   L LS+N  +
Sbjct: 335 LSTHHTLKN---LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (286), Expect = 1e-27
 Identities = 65/366 (17%), Positives = 128/366 (34%), Gaps = 52/366 (14%)

Query: 142 LDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSI 201
           +D  L       +++           +    + + +I+   ++ +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 202 EELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSG 261
           E L+L+D      I          ++      N +                     L   
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY-------------------LPPH 111

Query: 262 YGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPI 321
                           L  + L    ++   P  +  N  KL TL + N++L        
Sbjct: 112 VFQNVP---------LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDL 381
            +   L+ L +S+N    H+ L    ++P+L   N+S N L     S+      ++ LD 
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDA 212

Query: 382 SNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQI 437
           S+N +   +   +    V L  L L +N+L           L  +DLS N+ +  I    
Sbjct: 213 SHNSIN-VVRGPV---NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHP 267

Query: 438 -GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSL 496
              + R++ L +S+N L   +      +  ++ LDLS+N L   +     +   LE   L
Sbjct: 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 497 AFNNLS 502
             N++ 
Sbjct: 326 DHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 70/375 (18%), Positives = 118/375 (31%), Gaps = 90/375 (24%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
            S   +  L L                                 I  +      F     
Sbjct: 66  DSFRQVELLNLNDL-----------------------------QIEEID--TYAFAYAHT 94

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTL 134
                                 ++ L M    I         + ++ P L  L L     
Sbjct: 95  ----------------------IQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER--- 126

Query: 135 STNSSRILDRGL-CSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASS 193
             N    L RG+  +   L  L   NN+L           TSL+ L +SSN+LT      
Sbjct: 127 --NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HV 180

Query: 194 PLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ- 252
            L+ + S+   ++S N       L  L     ++  DA +N +N        +  P    
Sbjct: 181 DLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNVE 227

Query: 253 LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS 312
           L  L L     +  T   +L +   L  VDLS+ ++  +          +L+ L++ N+ 
Sbjct: 228 LTILKLQ---HNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR 283

Query: 313 LAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGN 372
           L     L       L+ LD+S+N+   H+          L +  +  N++  ++      
Sbjct: 284 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSI-VTLK--LST 337

Query: 373 INLLKILDLSNNQLT 387
            + LK L LS+N   
Sbjct: 338 HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 34/225 (15%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSI-ASLFPS 71
            +  +PSL    + +N  +         L     +E    S +S+       +   +   
Sbjct: 181 DLSLIPSLFHANVSYNLLS--------TLAIPIAVEELDASHNSI-----NVVRGPVNVE 227

Query: 72  LKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSL 129
           L  L + +   N +       ++  L  +++    +       F          L+ L +
Sbjct: 228 LTILKLQH---NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF-----VKMQRLERLYI 279

Query: 130 SDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGS 189
           S+     N    L+     +  L+ L   +N L   +         L  L +  N +   
Sbjct: 280 SN-----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-- 331

Query: 190 IASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENN 234
             +  L+   +++ L LS N +          N +R  + DA+ +
Sbjct: 332 --TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 11  LQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFP 70
           L ++    ++  L   HN+                 L    L     +++    + +  P
Sbjct: 198 LSTLAIPIAVEELDASHNSI------NVVRGPVNVELT--ILKLQHNNLTDTAWLLNY-P 248

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLS 130
            L  + +SY E+  ++    F   + LE L +   R+      L + G+  P+LK L LS
Sbjct: 249 GLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLS 303

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
                 N    ++R       L+ LY  +N +  +L   ++   +L+ L +S N    + 
Sbjct: 304 H-----NHLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNS 355

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLE 218
             +   ++     +  +D H +I   LE
Sbjct: 356 LRALFRNVARP-AVDDADQHCKIDYQLE 382

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (285), Expect = 1e-26
 Identities = 75/361 (20%), Positives = 144/361 (39%), Gaps = 38/361 (10%)

Query: 127 LSLSDFTLSTNSSRILDR-GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQ 185
               D  +   +  +       +L + + +   N+ +R      + +   + +L+++  Q
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 186 LTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYS 245
           +   I +   A+  +I++L++  N  R  +      N   L +   E N+L+  +     
Sbjct: 87  IE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SL--PRG 141

Query: 246 LTTPNFQLQYLLLSS---GYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTK 302
           +     +L  L +S+      +  TF         L+ + LS  ++       L+ +   
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTF----QATTSLQNLQLSSNRLT-HVDLSLIPS--- 193

Query: 303 LKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNAL 362
           L    +  + L+      +     + +LD S+N+    +    G +   L    +  N L
Sbjct: 194 LFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNL 244

Query: 363 DGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLE-----GKVLS 417
             +  +   N   L  +DLS N+L  +I  H  V    L+ L +SNN L      G+ + 
Sbjct: 245 --TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP 301

Query: 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
            L  LDLS N L+ H+        R++ L L HN++  L  ST   LK+   L LS+N  
Sbjct: 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDW 357

Query: 478 N 478
           +
Sbjct: 358 D 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (263), Expect = 5e-24
 Identities = 62/368 (16%), Positives = 124/368 (33%), Gaps = 65/368 (17%)

Query: 135 STNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSP 194
                + +D  L       +++           +    + + +I+   ++ +   + ++ 
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 70

Query: 195 LAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQ 254
           L     +E L+L+D      I          ++      N +                  
Sbjct: 71  LDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY---------------- 113

Query: 255 YLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLA 314
              L                   L  + L    ++   P  +  N  KL TL + N++L 
Sbjct: 114 ---LPPHVFQNVP---------LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 160

Query: 315 GPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNIN 374
                   +   L+ L +S+N    H+ L    ++P+L   N+S N L     S+     
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPI 211

Query: 375 LLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP 434
            ++ LD S+N +                        + G V   L+ L L  N L     
Sbjct: 212 AVEELDASHNSIN----------------------VVRGPVNVELTILKLQHNNLTD--T 247

Query: 435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF 494
             + N   +  ++LS+N L  ++   F  ++ +E L +S N+L   +      + TL+V 
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 306

Query: 495 SLAFNNLS 502
            L+ N+L 
Sbjct: 307 DLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.5 bits (232), Expect = 4e-20
 Identities = 88/488 (18%), Positives = 170/488 (34%), Gaps = 62/488 (12%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           +L      Y  H +          E     N +  T   S++   L  ++   F  ++ L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 80

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
           +++  ++  +     F +  +++ L M    I         + ++ P L  L L      
Sbjct: 81  NLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER---- 132

Query: 136 TNSSRILDRGL-CSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSP 194
            N    L RG+  +   L  L   NN+L           TSL+ L +SSN+LT       
Sbjct: 133 -NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVD 187

Query: 195 LAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ-L 253
           L+ + S+   ++S N       L  L     ++  DA +N +N        +  P    L
Sbjct: 188 LSLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNVEL 234

Query: 254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSL 313
             L L     +  T   +L +   L  VDLS+ ++  +          +L+ L++ N+ L
Sbjct: 235 TILKLQ---HNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 290

Query: 314 AGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNI 373
                L       L+ LD+S+N+   H+          L +  +  N++  ++       
Sbjct: 291 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSI-VTLK--LSTH 344

Query: 374 NLLKILDLSNNQLT----------------GEIPEHLAVGCVYLDFLAL--SNNSLEGKV 415
           + LK L LS+N                    +  +H  +       L    S+     ++
Sbjct: 345 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

Query: 416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
           L  ++   +        +    G  +   T+N   +    +       L+  E L+   N
Sbjct: 405 LQYIALTSVVEK-----VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVN 459

Query: 476 KLNGKIPH 483
           +L  ++  
Sbjct: 460 ELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 25/161 (15%), Positives = 47/161 (29%), Gaps = 12/161 (7%)

Query: 353 ISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLA----VGCVYLDFLALSN 408
           +      N           + NL       +  +  +  +       +       +   N
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 409 NSLEG------KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTF 461
           +++             +  L+L+  + I  I          IQ L +  N +  L P  F
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119

Query: 462 SNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
            N+  +  L L  N L+            L   S++ NNL 
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 65/455 (14%), Positives = 133/455 (29%), Gaps = 59/455 (12%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
            +  +PSL    + +N  +         L     +E    S +S  I++++    +   L
Sbjct: 187 DLSLIPSLFHANVSYNLLS--------TLAIPIAVEELDASHNS--INVVR--GPVNVEL 234

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLS 130
             L + +   N +       ++  L  +++    +       F          L+ L +S
Sbjct: 235 TILKLQH---NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF-----VKMQRLERLYIS 286

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
           +     N    L+     +  L+ L   +N L   +         L  L +  N +    
Sbjct: 287 N-----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV--- 337

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENN-----ELNAEITESYS 245
            +  L+   +++ L LS N +          N +R  + DA+ +     +L   +    S
Sbjct: 338 -TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKES 396

Query: 246 LT-TPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLK 304
                +  LQY+ L+S                 +  V      +  +    L  N     
Sbjct: 397 DKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEA 456

Query: 305 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG 364
            +  +   +       I   + L+ L    +               NL  + +  + L  
Sbjct: 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT--------------NLRRYRLPKDGLAR 502

Query: 365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLE-------GKVLS 417
           S  +       LK       + T              + L   N +LE        K   
Sbjct: 503 SSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAE 562

Query: 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 452
           L     L   K+      +  N    +  +  H++
Sbjct: 563 LRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHHH 597

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.7 bits (147), Expect = 7e-10
 Identities = 48/236 (20%), Positives = 87/236 (36%), Gaps = 34/236 (14%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLF----- 69
            + P L TL + +NN       T Q   +  NL+ S+   + + +SL+ S+         
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 203

Query: 70  -------PSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTP 122
                   +++ L  S+  +N V           L  L ++   +            + P
Sbjct: 204 LSTLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDTAWL-----LNYP 254

Query: 123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVS 182
            L  + LS   L      I+      +  L+ LY  NN L  +L      + +L++LD+S
Sbjct: 255 GLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309

Query: 183 SNQLTGSIASSPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAENNELN 237
            N L   +  +       +E L+L  N    + +S      H  LK     +N+ +
Sbjct: 310 HNHLL-HVERN-QPQFDRLENLYLDHNSIVTLKLS-----THHTLKNLTLSHNDWD 358

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (274), Expect = 2e-26
 Identities = 63/319 (19%), Positives = 112/319 (35%), Gaps = 30/319 (9%)

Query: 222 NHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSS---GYGDGATFPKFLYHQHDL 278
           N +R KI    ++ L   +            ++ L LS         A    F      L
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAW---NVKELDLSGNPLSQISAADLAPF----TKL 60

Query: 279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQ 338
           E ++LS   +        LE+ + L+TL L N+ +       +     +  L  +NNN  
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS 112

Query: 339 GHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGC 398
             +            +  ++ N +        G  + ++ LDL  N++       LA   
Sbjct: 113 -RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 399 VYLDFLALSNNSL----EGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 454
             L+ L L  N +       V + L  LDLS NKL   + P+  +   +  ++L +N L 
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 455 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFAT 514
             I       +++E  DL  N  +     +    K   V ++A   +  ++     +  T
Sbjct: 228 L-IEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECT 284

Query: 515 FNESSYEGNTFLCGLPLPI 533
                + G      LP P 
Sbjct: 285 VPTLGHYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 35/190 (18%), Positives = 73/190 (38%), Gaps = 10/190 (5%)

Query: 321 IHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILD 380
             +  R +   V++++ +      +     N+   ++S N L     +       L++L+
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 381 LSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-KVLSLLSGLDLSCNKLIGHIPPQIGN 439
           LS+N L  E  +        L  L L+NN ++   V   +  L  + N  I  +      
Sbjct: 65  LSSNVLY-ETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN-ISRVSC--SR 118

Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG-KIPHQLVELKTLEVFSLAF 498
               + + L++N +T L          ++ LDL  N+++            TLE  +L +
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 499 NNLSGEIPEW 508
           N +  ++   
Sbjct: 179 NFIY-DVKGQ 187

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 49/332 (14%), Positives = 111/332 (33%), Gaps = 30/332 (9%)

Query: 148 SLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLS 207
           +    +     ++ L+ +L     +  +++ LD+S N L+  I+++ LA  T +E L+LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 208 DNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSS---GYGD 264
            N          L + S L+  D  NN     + E          ++ L  ++       
Sbjct: 67  SNVLY---ETLDLESLSTLRTLDLNNNY----VQELLVGP----SIETLHAANNNISRVS 115

Query: 265 GATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAG-PFRLPIHS 323
            +            + + L++ K+     +      ++++ L L  + +    F     S
Sbjct: 116 CSRGQG-------KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSN 383
              L  L++  N     +  ++      L + ++S N L   +   F +   +  + L N
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 384 NQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 443
           N+L   I + L      L+   L  N      L      +     +      ++      
Sbjct: 224 NKLV-LIEKALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 444 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
           +    +  +                 + L ++
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.7 bits (210), Expect = 4e-18
 Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 13/163 (7%)

Query: 344 EIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDF 403
           EI           ++ ++L  ++ S   +   +K LDLS N L+ +I          L+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 404 LALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 459
           L LS+N L      + LS L  LDL+ N +      ++     I+TL+ ++NN++ +  S
Sbjct: 63  LNLSSNVLYETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCS 117

Query: 460 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
                K+   + L+ NK+             ++   L  N + 
Sbjct: 118 RGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 22/202 (10%)

Query: 11  LQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFP 70
           +Q +   PS+ TL+  +NN       +          +   L+ + + +           
Sbjct: 92  VQELLVGPSIETLHAANNNI------SRVSCSRGQGKKNIYLANNKITMLRDLDEGCR-S 144

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLS 128
            ++ L +   E++ V   +      +LEHLN++   I                  LK L 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-------AKLKTLD 197

Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTG 188
           LS      N    +     S   +  +   NN L   +   +    +L   D+  N    
Sbjct: 198 LSS-----NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 189 SIASSPLAHLTSIEELHLSDNH 210
                  +    ++ +      
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 41/293 (13%), Positives = 96/293 (32%), Gaps = 31/293 (10%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           +        +  ++             +  N++   LSG+ L       +A     L+ L
Sbjct: 8   NGNRYKIEKVTDSSLK---QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELL 63

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
           ++S    N +          +L  L++    +              PS++ L  ++    
Sbjct: 64  NLSS---NVLYETLDLESLSTLRTLDLNNNYV---QEL-----LVGPSIETLHAAN---- 108

Query: 136 TNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPL 195
            N+   +          + +Y  NN +           + ++ LD+  N++     +   
Sbjct: 109 -NNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 196 AHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY 255
           A   ++E L+L  N       ++     ++LK  D  +N+L   +   +        + +
Sbjct: 166 ASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAA---GVTW 218

Query: 256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFL 308
           + L +         K L    +LE+ DL     +          N +++T+  
Sbjct: 219 ISLRN--NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 33/226 (14%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
                L  L L  N         T +L + + L    L+ +      +Q +    PS++ 
Sbjct: 55  APFTKLELLNLSSNVL-----YETLDLESLSTLRTLDLNNNY-----VQELLVG-PSIET 103

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDF 132
           L  +   ++ V         +  +++ +   +I    +             ++YL L   
Sbjct: 104 LHAANNNISRV----SCSRGQGKKNIYLANNKITMLRDLDEGCR-----SRVQYLDLKLN 154

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIAS 192
            + T +   L     +   L+ L    N +   +         L+ LD+SSN+L   +  
Sbjct: 155 EIDTVNFAELAASSDT---LEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGP 208

Query: 193 SPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAENNELN 237
                   +  + L +N    I  +L        L+ FD   N  +
Sbjct: 209 E-FQSAAGVTWISLRNNKLVLIEKALRFS---QNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 492
           I     N  R +   ++ ++L   + S   +  +++ LDLS N L+      L     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 493 VFSLAFNNLSGEIPE 507
           + +L+ N L  E  +
Sbjct: 62  LLNLSSNVLY-ETLD 75

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 3e-26
 Identities = 68/355 (19%), Positives = 119/355 (33%), Gaps = 49/355 (13%)

Query: 164 GSLPWCVANMTSLRILDVS-SNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFN 222
           GS      + +    L    S  L           L+  +  + +D       S     N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDV-----LSQWQRHYNADR--NRWHSAWRQAN 54

Query: 223 HSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVD 282
            +  +I       L A        T P      L L         FP   +    L+++ 
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPG--RVALELR--SVPLPQFPDQAFRLSHLQHMT 110

Query: 283 LSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLP--IHSHKRLRQLDVSNNNFQGH 340
           +    +  E P+ + +    L+TL L  + L     LP  I S  RLR+L +        
Sbjct: 111 IDAAGLM-ELPDTM-QQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTE 165

Query: 341 IPLEIGDI--------LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE 392
           +P  +           L NL S  +    +  S+P+S  N+  LK L + N+ L+  +  
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP 223

Query: 393 HLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 452
                       A+ +       L  L  LDL     + + PP  G    ++ L L   +
Sbjct: 224 ------------AIHH-------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 453 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
               +P     L  +E LDL       ++P  + +L    +  +   +L  ++ +
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 5e-18
 Identities = 63/455 (13%), Positives = 115/455 (25%), Gaps = 133/455 (29%)

Query: 35  TTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHF 94
            ++    H+ +  E     GS+        ++       N   +                
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQW-QRHYNADRNRWH--------SAWRQ 52

Query: 95  KSLEHLNMERARIAPNTSFLQIIGEST-PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQ 153
            +  +  +E        +   ++ ++T P    L L    L              L HLQ
Sbjct: 53  ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQ 107

Query: 154 ELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI 213
            +      L   LP  +     L  L ++ N L  ++ +S +A L  + EL +       
Sbjct: 108 HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRAC---- 160

Query: 214 PISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLY 273
                       L          +A                                   
Sbjct: 161 ----------PELTELPEPLASTDA------------------------------SGEHQ 180

Query: 274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVS 333
              +L+ + L  T +    P   + N   LK+L +               +  L  L   
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKI--------------RNSPLSAL--- 221

Query: 334 NNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEH 393
                      I   LP L   ++       + P  FG    LK L L +          
Sbjct: 222 --------GPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD---------- 262

Query: 394 LAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 453
                                           C+ L+  +P  I  LT+++ L+L     
Sbjct: 263 --------------------------------CSNLL-TLPLDIHRLTQLEKLDLRGCVN 289

Query: 454 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 488
              +PS  + L     + +  +       H+ V  
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 45/241 (18%), Positives = 76/241 (31%), Gaps = 31/241 (12%)

Query: 8   SKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIAS 67
            +       L  L  + +               +  F  LE  TL+ + L  +L  SIAS
Sbjct: 94  PQFPDQAFRLSHLQHMTIDAAGL----MELPDTMQQFAGLETLTLARNPLR-ALPASIAS 148

Query: 68  LFPSLKNLSMSYC--------EVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGE 119
           L   L+ LS+  C         +             +L+ L +E   I    S    I  
Sbjct: 149 L-NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI---RSLPASIAN 204

Query: 120 STPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRIL 179
              +LK L + +     +    L   +  L  L+EL         + P        L+ L
Sbjct: 205 LQ-NLKSLKIRN-----SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 180 DVSS-NQLTGSIASSPLAHLTSIEELHLSDNHF--RIPISLEPLFNHSRLKIFDAENNEL 236
            +   + L  ++    +  LT +E+L L       R+P  +  L       I     +  
Sbjct: 259 ILKDCSNLL-TLPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQL---PANCIILVPPHLQ 313

Query: 237 N 237
            
Sbjct: 314 A 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 43/199 (21%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           + P    L L+             +    ++L++ T+  + L   L  ++      L+ L
Sbjct: 79  TQPGRVALELRSVPL----PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETL 132

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
           +++                  L  L        P +     I      L+ LS+      
Sbjct: 133 TLARN---------------PLRAL--------PAS-----IASLN-RLRELSIRACPEL 163

Query: 136 TN-----SSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
           T      +S         L++LQ L      +R SLP  +AN+ +L+ L + ++ L+ ++
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-AL 221

Query: 191 ASSPLAHLTSIEELHLSDN 209
             + + HL  +EEL L   
Sbjct: 222 GPA-IHHLPKLEELDLRGC 239

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (278), Expect = 4e-26
 Identities = 72/342 (21%), Positives = 128/342 (37%), Gaps = 53/342 (15%)

Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN 233
           T  R+LD+  N++  ++     A    +EEL L++N     +      N   L+     +
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRS 89

Query: 234 NELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFP 293
           N L            P      L                    +L  +D+S  K+     
Sbjct: 90  NRLK---------LIPLGVFTGL-------------------SNLTKLDISENKIV-ILL 120

Query: 294 NWLLENNTKLKTLFLVNDSL----AGPFR-LPIHSHKRLRQLDVSNNNFQGHIPLEIGDI 348
           +++ ++   LK+L + ++ L       F  L       L QL +   N    IP E    
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-----SLEQLTLEKCNLT-SIPTEALSH 174

Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
           L  LI   +    ++     SF  +  LK+L++S+      +  +   G   L  L++++
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITH 233

Query: 409 NSLEG------KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTF 461
            +L        + L  L  L+LS N  I  I   +   L R+Q + L    L  + P  F
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 462 SNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAFNNLS 502
             L ++  L++S N+L   +   +   +  LE   L  N L+
Sbjct: 293 RGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.8 bits (205), Expect = 6e-17
 Identities = 69/352 (19%), Positives = 119/352 (33%), Gaps = 58/352 (16%)

Query: 18  PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSM 77
                L L  N      T    E  +F +LE   L+ +   +S ++  A           
Sbjct: 32  TETRLLDLGKNRIK---TLNQDEFASFPHLEELELNEN--IVSAVEPGA----------- 75

Query: 78  SYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTLS 135
                        F +  +L  L +   R+   P   F         +L  L +S+    
Sbjct: 76  -------------FNNLFNLRTLGLRSNRLKLIPLGVF-----TGLSNLTKLDISE---- 113

Query: 136 TNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSP 194
            N    +LD     L +L+ L   +NDL        + + SL  L +    LT SI +  
Sbjct: 114 -NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEA 171

Query: 195 LAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQ 254
           L+HL  +  L L   +    I         RLK+ +  +      +T +         L 
Sbjct: 172 LSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPN---CLYGLNLT 227

Query: 255 YLLLS----SGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310
            L ++    +     A     + H   L +++LS+  ++      +L    +L+ + LV 
Sbjct: 228 SLSITHCNLTAVPYLA-----VRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVG 281

Query: 311 DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNAL 362
             LA            LR L+VS N     +   +   + NL +  +  N L
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 42/203 (20%), Positives = 71/203 (34%), Gaps = 41/203 (20%)

Query: 12  QSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPS 71
           +++  L  L  L L+H N                 L+   +S     +  +        +
Sbjct: 170 EALSHLHGLIVLRLRHLNIN---AIRDYSFKRLYRLKVLEISHWPY-LDTMTPNCLYGLN 225

Query: 72  LKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSD 131
           L +LS+++C +  V                       P  +           L++L+LS 
Sbjct: 226 LTSLSITHCNLTAV-----------------------PYLAV-----RHLVYLRFLNLSY 257

Query: 132 FTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDVSSNQLTGS 189
                N  S I    L  L+ LQE+  V   L   +       +  LR+L+VS NQLT +
Sbjct: 258 -----NPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-T 310

Query: 190 IASSPLAHLTSIEELHLSDNHFR 212
           +  S    + ++E L L  N   
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (276), Expect = 7e-26
 Identities = 61/423 (14%), Positives = 132/423 (31%), Gaps = 69/423 (16%)

Query: 117 IGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSL 176
           I ++    K   ++D +L       L     S  +++EL    N L       +A  T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQ----ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 177 RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL 236
            +L++SSN L  +     L  L+++  L L++N+      ++ L     ++   A NN +
Sbjct: 61  ELLNLSSNVLYET---LDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNI 111

Query: 237 NAEITESYSLTTPNFQ-LQYLLLS----SGYGDGATFPKFLYHQHDLEYVDLSHTKMNGE 291
           +        ++    Q  + + L+    +   D          +  ++Y+DL   +++  
Sbjct: 112 S-------RVSCSRGQGKKNIYLANNKITMLRDLD-----EGCRSRVQYLDLKLNEIDTV 159

Query: 292 FPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNFQGHIPLEIGDILP 350
               L  ++  L+ L L  + +     +       +L+ LD+S+N     +  E      
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQS-AA 214

Query: 351 NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTG---------------------- 388
            +   ++  N L   I  +      L+  DL  N                          
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 389 EIPEHLAVGCVYLDFLALSNN---SLEGKVLSLLSGLDLSCNKL-------IGHIPPQIG 438
           ++       C               L       L  L    + L          +  +  
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAF 498
           N  R + ++        +I       +   +L+     L+ ++ +       L+      
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 499 NNL 501
              
Sbjct: 394 VGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  102 bits (256), Expect = 2e-23
 Identities = 58/372 (15%), Positives = 126/372 (33%), Gaps = 72/372 (19%)

Query: 165 SLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR--IPISLEPLFN 222
           ++     N    +I  V+ + L     +S      +++EL LS N         L P   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-- 57

Query: 223 HSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVD 282
            ++L++ +  +N L           T + +                         L  +D
Sbjct: 58  -TKLELLNLSSNVLY---------ETLDLE---------------------SLSTLRTLD 86

Query: 283 LSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIP 342
           L++  +        L     ++TL   N++++   R+     +  + + ++NN       
Sbjct: 87  LNNNYVQE------LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRD 137

Query: 343 LEIGDILPNLISFNISMNALDG-SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYL 401
           L+ G     +   ++ +N +D  +      + + L+ L+L  N +  ++   +       
Sbjct: 138 LDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV------ 189

Query: 402 DFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 461
                          + L  LDLS NK +  + P+  +   +  ++L +N L   I    
Sbjct: 190 --------------FAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVL-IEKAL 233

Query: 462 SNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYE 521
              +++E  DL  N  +          K   V ++A   +  ++     +  T     + 
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHY 291

Query: 522 GNTFLCGLPLPI 533
           G      LP P 
Sbjct: 292 GAYCCEDLPAPF 303

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 62/496 (12%), Positives = 135/496 (27%), Gaps = 89/496 (17%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
            S  ++  L L  N  +     +  +L  FT LE   LS +   +     + SL  +L+ 
Sbjct: 31  QSAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSN--VLYETLDLESL-STLRT 84

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTL 134
           L ++   V      Q      S+E L+     I+      ++        K + L++   
Sbjct: 85  LDLNNNYV------QELLVGPSIETLHAANNNIS------RVSCSRGQGKKNIYLAN--- 129

Query: 135 STNS-SRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQLTGSIAS 192
             N  + + D        +Q L    N++   +     A+  +L  L++  N +   +  
Sbjct: 130 --NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV-- 184

Query: 193 SPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNF 251
                   ++ L LS N    +    +     + +      NN+L               
Sbjct: 185 KGQVVFAKLKTLDLSSNKLAFMGPEFQSA---AGVTWISLRNNKLV-------------- 227

Query: 252 QLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVND 311
                             K L    +LE+ DL     +          N +++T+     
Sbjct: 228 ---------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQ 270

Query: 312 SLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGS----IP 367
           ++                        +  +P    D L  L     ++ +  GS    + 
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLE 329

Query: 368 SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN 427
               N    + +D    Q    + + + +                         L+    
Sbjct: 330 CERENQARQREIDALKEQYR-TVIDQVTLR------------------KQAKITLEQKKK 370

Query: 428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK-IPHQLV 486
            L   +         +            L          ++ L     +     +  Q V
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429

Query: 487 ELKTLEVFSLAFNNLS 502
           +   +  + +  +  +
Sbjct: 430 QNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 63/481 (13%), Positives = 146/481 (30%), Gaps = 71/481 (14%)

Query: 11  LQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFP 70
              + SL +L TL L +N           EL    ++E    + +  +IS +    S   
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQ--------ELLVGPSIETLHAANN--NISRVS--CSRGQ 120

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLS 130
             KN+ ++  ++  +           +++L+++   I    +F ++   S+ +L++L+L 
Sbjct: 121 GKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEID-TVNFAELAA-SSDTLEHLNLQ 177

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
                 N    +   +     L+ L   +N L   +     +   +  + + +N+L   I
Sbjct: 178 Y-----NFIYDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
             + L    ++E   L  N F      +    + R++    +  +               
Sbjct: 230 EKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK--------------- 273

Query: 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310
                  L+    +  T P   ++             +   F + L+    K   L    
Sbjct: 274 ------KLTGQNEEECTVPTLGHYGA------YCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 311 DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSF 370
            S          +  R R++D     ++  +  ++       I+      ALD  + +  
Sbjct: 322 GSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 371 GNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLI 430
                L                        ++    +      ++L  +  +        
Sbjct: 381 RAHAELDGTLQQAVG--------------QIELQHATEEQSPLQLLRAI--VKRYEEMY- 423

Query: 431 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 490
             +  Q      I+  ++  +  T L        K     DL+    N  +   +V  + 
Sbjct: 424 --VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481

Query: 491 L 491
           L
Sbjct: 482 L 482

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  108 bits (272), Expect = 2e-25
 Identities = 77/403 (19%), Positives = 144/403 (35%), Gaps = 51/403 (12%)

Query: 96  SLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLC-SLMHL 152
            + ++++    IA    TSF          L++L +   T       ++       L  L
Sbjct: 31  HVNYVDLSLNSIAELNETSF-----SRLQDLQFLKVEQQTPGL----VIRNNTFRGLSSL 81

Query: 153 QELYKVNNDLRGSLPWCV-ANMTSLRILDVSSNQLTGS-IASSPLAHLTSIEELHLSDNH 210
             L    N     L       + +L +L ++   L G+ ++ +    LTS+E L L DN+
Sbjct: 82  IILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 211 FRIPISLEPLFNH-SRLKIFDAENNELNAEITES-YSLTTPNFQ------LQYLLLSSGY 262
            +  I     F +  R  + D   N++ +   E   +    +F       +    ++  +
Sbjct: 141 IKK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 263 GDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL--LENNTKLKTLFLVNDSLAGPFRLP 320
                          +  +DLS                  TK+++L L N          
Sbjct: 200 LGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN------SYNM 252

Query: 321 IHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGNINLLKIL 379
             S       D  N  F+G            + + ++S + +  ++    F +   L+ L
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEA-------SGVKTCDLSKSKI-FALLKSVFSHFTDLEQL 304

Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLIGHI 433
            L+ N++  +I ++   G  +L  L LS N   S++ ++   L  L  LDLS N  I  +
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRAL 362

Query: 434 PPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
             Q    L  ++ L L  N L  +    F  L  ++ + L  N
Sbjct: 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.2 bits (224), Expect = 2e-19
 Identities = 59/359 (16%), Positives = 114/359 (31%), Gaps = 58/359 (16%)

Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN 233
             +  +D+S N +   +  +  + L  ++ L +      + I        S L I   + 
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 234 NELNAEITESYSLTTPNF----QLQYLLLS-----SGYGDGATFPKFLYHQHDLEYVDLS 284
           N+          L T  F     L+ L L+          G  F         LE + L 
Sbjct: 89  NQFL-------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL----TSLEMLVLR 137

Query: 285 HTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLE 344
              +    P     N  +   L L  + +     +        +    +           
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVK---SICEEDLLNFQGKHFTLLR-------- 186

Query: 345 IGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE------------ 392
               L ++   +++   L      +      +  LDLS N     + +            
Sbjct: 187 ----LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242

Query: 393 --------HLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRI 443
                   ++     + +F    N + +G   S +   DLS +K I  +   +  + T +
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDL 301

Query: 444 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
           + L L+ N +  +  + F  L H+  L+LS N L          L  LEV  L++N++ 
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 53/277 (19%), Positives = 95/277 (34%), Gaps = 45/277 (16%)

Query: 269 PKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSL----AGPF-RLPIHS 323
                   DL+++ +          N      + L  L L  +       G F  L    
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA--- 103

Query: 324 HKRLRQLDVSNNNFQGH-IPLEIGDILPNLISFNISMNALDGSIPSS-FGNINLLKILDL 381
              L  L ++  N  G  +       L +L    +  N +    P+S F N+    +LDL
Sbjct: 104 --NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 382 SNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL----------------LSGLDLS 425
           + N++   I E   +      F  L  +S+  + ++                 ++ LDLS
Sbjct: 162 TFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 426 CNKLIGHIPPQI---GNLTRIQTLN----------LSHNNLTGLIPSTFSNLK--HIESL 470
            N     +  +       T+IQ+L             H N       TF  L+   +++ 
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280

Query: 471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
           DLS +K+   +         LE  +LA N ++ +I +
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 46/209 (22%), Positives = 79/209 (37%), Gaps = 24/209 (11%)

Query: 17  LPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA------SLFP 70
             S+ TL L  N F  +      +    T ++   LS S    S              F 
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 71  SLKNLSMSYCEVNG----VVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSL 124
            L+   +  C+++      +    F HF  LE L + +  I    + +F          L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-----WGLTHL 325

Query: 125 KYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDVSS 183
             L+LS   L +  SR+ +     L  L+ L    N +R +L       + +L+ L + +
Sbjct: 326 LKLNLSQNFLGSIDSRMFEN----LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDT 380

Query: 184 NQLTGSIASSPLAHLTSIEELHLSDNHFR 212
           NQL  S+       LTS++++ L  N + 
Sbjct: 381 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (273), Expect = 2e-25
 Identities = 95/435 (21%), Positives = 157/435 (36%), Gaps = 41/435 (9%)

Query: 91  FPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCS 148
                 L  L +   RI     + F     +    L+YL LS   L   S          
Sbjct: 41  ILSLSKLRILIISHNRIQYLDISVF-----KFNQELEYLDLSHNKLVKISCH-------P 88

Query: 149 LMHLQELYKVNNDLRGSLPWCVA--NMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHL 206
            ++L+ L    N    +LP C    NM+ L+ L +S+  L    +  P+AHL   + L +
Sbjct: 89  TVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLV 146

Query: 207 SDNHFRIPISLEPLFN--HSRLKIFDAENNELNAEITESYSLTTPN--FQLQYLLLSSGY 262
               +      E L +     L I    N E +  +  S           ++ +L  +  
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 263 GDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLE--NNTKLKTLFLVNDSLAGP--FR 318
               +    L     L  + L++ +        +L+   +T +    + N  L G   FR
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 319 LPIHSHKRLRQLDVSN--NNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLL 376
              +S   L+ L +    ++  G     I +I  N+   N +++            I+  
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG--------KVLSLLSGLDLSCNK 428
             LD SNN LT +           L+ L L  N L+           +  L  LD+S N 
Sbjct: 327 LHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 429 LIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 487
           +              + +LN+S N LT  I         I+ LDL  NK+   IP Q+V+
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVK 442

Query: 488 LKTLEVFSLAFNNLS 502
           L+ L+  ++A N L 
Sbjct: 443 LEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (269), Expect = 7e-25
 Identities = 77/487 (15%), Positives = 152/487 (31%), Gaps = 58/487 (11%)

Query: 18  PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSG---SSLHISLLQSIASL------ 68
                L +  N  +      T ++ + + L    +S      L IS+ +    L      
Sbjct: 21  QKTTILNISQNYIS---ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 69  -----------FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQII 117
                        +LK+L +S+   + +   + F +   L+ L +             + 
Sbjct: 78  HNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT---------HLE 128

Query: 118 GESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLR 177
             S   + +L++S   L    +         L                    + +++   
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 178 ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELN 237
           + ++  + +   +  +  ++  SI               L  L  + +L      N E  
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSI---------------LAKLQTNPKLSNLTLNNIETT 233

Query: 238 AEITESYSLTTPNFQLQYLLLSS-GYGDGATFPKFLYHQHDLEYVDLSHTKMN--GEFPN 294
                       +  + Y  +S+        F  F Y    L+ + +     +  G   +
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 295 WLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS 354
           ++ E  + +               L          LD SNN        E    L  L +
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELET 352

Query: 355 FNISMNALD--GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLE 412
             + MN L     I      +  L+ LD+S N ++ +  +        L  L +S+N L 
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 413 ----GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 468
                 +   +  LDL  NK+   IP Q+  L  +Q LN++ N L  +    F  L  ++
Sbjct: 413 DTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

Query: 469 SLDLSYN 475
            + L  N
Sbjct: 472 KIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.8 bits (215), Expect = 4e-18
 Identities = 62/400 (15%), Positives = 136/400 (34%), Gaps = 40/400 (10%)

Query: 121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILD 180
           +     L++S   +S   +  +     SL  L+ L   +N ++            L  LD
Sbjct: 20  SQKTTILNISQNYISELWTSDIL----SLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNH-SRLKIFDAENNELNAE 239
           +S N+L             +++ L LS N F   + +   F + S+LK        L   
Sbjct: 76  LSHNKLV----KISCHPTVNLKHLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 240 ITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLEN 299
                +    +  L  L  + G  +     +    +  L  V  ++ + +          
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES-LHIVFPTNKEFH---------- 179

Query: 300 NTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM 359
                  F+++ S+     L + + K + + +  +        L+    L NL   NI  
Sbjct: 180 -------FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 360 NALDGSIPSSFGNINLLKILDLSNNQLTG----EIPEHLAVGCVYLDFLALSNNSLEG-- 413
                           +    +SN +L G       ++       L    + ++      
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 414 ----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 469
               ++ S ++  + + +            ++    L+ S+N LT  +     +L  +E+
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 470 LDLSYNKLN--GKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
           L L  N+L    KI     ++K+L+   ++ N++S +  +
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.1 bits (208), Expect = 3e-17
 Identities = 75/445 (16%), Positives = 144/445 (32%), Gaps = 57/445 (12%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
               +L  L L  N F   A    +E  N + L++  LS + L  S +  IA L  S   
Sbjct: 87  HPTVNLKHLDLSFNAFD--ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTL 134
           L +           +     +     ++       N  F  I+  S  ++  L LS+   
Sbjct: 145 LVLG----ETYGEKEDPEGLQDFNTESLHIVFP-TNKEFHFILDVSVKTVANLELSNIKC 199

Query: 135 STNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSP 194
               +              +     + L         +  +L  ++ + N     +    
Sbjct: 200 VLEDN--------------KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ--- 242

Query: 195 LAHLTSIEELHLSDNHFRIPISLEPL-FNHSRLKIFDAENNELNAEITESYSLTTPNFQL 253
           L   T++    +S+   +  +      ++ + LK         +        +      +
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSL 313
                +   G                ++D S+  +  +       + T+L+TL L  + L
Sbjct: 303 NIKNFTV-SGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQL 360

Query: 314 A--GPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG 371
                        K L+QLD+S N+              +L+S N+S N L  +I     
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 372 NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL--LSGLDLSCNKL 429
               +K+LDL +N++                       S+  +V+ L  L  L+++ N+L
Sbjct: 421 P--RIKVLDLHSNKIK----------------------SIPKQVVKLEALQELNVASNQL 456

Query: 430 IGHIPPQI-GNLTRIQTLNLSHNNL 453
              +P  I   LT +Q + L  N  
Sbjct: 457 -KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.8 bits (163), Expect = 9e-12
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 27/178 (15%)

Query: 330 LDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE 389
           +D S N    H+P    D+       NIS N +     S   +++ L+IL +S+N++   
Sbjct: 5   VDRSKNGLI-HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-Y 59

Query: 390 IPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 449
           +   +      L++L LS+N L            +SC+               ++ L+LS
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVK----------ISCHP-----------TVNLKHLDLS 98

Query: 450 HNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
            N    L I   F N+  ++ L LS   L       +  L   +V  +       +  
Sbjct: 99  FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (274), Expect = 3e-25
 Identities = 77/380 (20%), Positives = 127/380 (33%), Gaps = 55/380 (14%)

Query: 147 CSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHL 206
           C       L    + L  +LP C+     +  L +  N LT     S  A    +  L +
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-----SLPALPPELRTLEV 88

Query: 207 SDNHFR-IPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDG 265
           S N    +P+    L     L IF      L A  +    L     QL            
Sbjct: 89  SGNQLTSLPVLPPGL---LELSIFSNPLTHLPALPSGLCKLWIFGNQLT----------- 134

Query: 266 ATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHK 325
            + P        L+ + +S  ++    P       ++L  L+  N+ L     LP     
Sbjct: 135 -SLPVLPPG---LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLP-MLPS 181

Query: 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQ 385
            L++L VS+N     +P    + L  L ++N  + +L             LK L +S N+
Sbjct: 182 GLQELSVSDNQLA-SLPTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNR 232

Query: 386 LTGEIPEHLAVGCVYLDFLALSNNSLEG--KVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 443
           LT  +P   +     L  L +S N L     + S L  L +  N+L   +P  + +L+  
Sbjct: 233 LT-SLPVLPS----ELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSE 286

Query: 444 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG 503
            T+NL  N L+         +           + +        E + L     A + L  
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVP 344

Query: 504 EIPEWKAQFATFNESSYEGN 523
                 A    ++    E N
Sbjct: 345 AREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 60/328 (18%), Positives = 96/328 (29%), Gaps = 61/328 (18%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISL------------LQ 63
             P L TL +  N      T+          L   +   + L                L 
Sbjct: 79  LPPELRTLEVSGNQL----TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 134

Query: 64  SIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPS 123
           S+  L P L+ LS+S  ++  +           L   N +          L  +      
Sbjct: 135 SLPVLPPGLQELSVSDNQLASL--PALPSELCKLWAYNNQ----------LTSLPMLPSG 182

Query: 124 LKYLSLSD---------------FTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPW 168
           L+ LS+SD                    N    L         L+EL    N L  SLP 
Sbjct: 183 LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLT-SLP- 237

Query: 169 CVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLK 227
                + L+ L VS N+LT    S P    + +  L +  N    +P   E L + S   
Sbjct: 238 --VLPSELKELMVSGNRLT----SLP-MLPSGLLSLSVYRNQLTRLP---ESLIHLSSET 287

Query: 228 IFDAENNELNAEITESY-SLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHT 286
             + E N L+    ++   +T+       ++     G  A       H    +++  +  
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE 347

Query: 287 KMNGEFPNW-LLENNTKLKTLFLVNDSL 313
                   W +           L  D L
Sbjct: 348 GEPAPADRWHMFGQEDNADAFSLFLDRL 375

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.8 bits (155), Expect = 8e-11
 Identities = 71/398 (17%), Positives = 122/398 (30%), Gaps = 96/398 (24%)

Query: 17  LPSLNTLYLKHNNFTGTATTTTQEL-HNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
              + TL +  NN T         L      L    +SG+ L      S+  L P L  L
Sbjct: 60  PAHITTLVIPDNNLT--------SLPALPPELRTLEVSGNQLT-----SLPVLPPGLLEL 106

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
           S+    +  +      P    L  L +   +       L  +    P L+ LS+SD  L+
Sbjct: 107 SIFSNPLTHL---PALP--SGLCKLWIFGNQ-------LTSLPVLPPGLQELSVSDNQLA 154

Query: 136 TNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPL 195
           +     L         L +L+  NN L  SLP      + L+ L VS NQL  S+ + P 
Sbjct: 155 S-----LPALPS---ELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLA-SLPTLP- 200

Query: 196 AHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQ 254
              + + +L   +N    +P         S LK      N L                  
Sbjct: 201 ---SELYKLWAYNNRLTSLPALP------SGLKELIVSGNRLT----------------- 234

Query: 255 YLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLA 314
                       + P        L+ + +S  ++    P       + L +L +  + L 
Sbjct: 235 ------------SLPVLPSE---LKELMVSGNRLT-SLPMLP----SGLLSLSVYRNQLT 274

Query: 315 GPFRLP--IHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGN 372
              RLP  +        +++  N       L+    + +   ++  +   D +  S+   
Sbjct: 275 ---RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 373 INLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS 410
                 L L+         E               +N+
Sbjct: 331 TRA---LHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 40/230 (17%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQEL-HNFTNLEYSTLSGSSLHISLLQSIASLFPSLK 73
                L  L+  +N  T         L    + L+  ++S +      L S+ +L   L 
Sbjct: 158 ALPSELCKLWAYNNQLT--------SLPMLPSGLQELSVSDNQ-----LASLPTLPSELY 204

Query: 74  NLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFT 133
            L      +  +           L+ L +   R       L  +      LK L +S   
Sbjct: 205 KLWAYNNRLTSLP-----ALPSGLKELIVSGNR-------LTSLPVLPSELKELMVSG-- 250

Query: 134 LSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASS 193
              N    L         L  L    N L   LP  + +++S   +++  N L+      
Sbjct: 251 ---NRLTSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS----ER 299

Query: 194 PLAHLTSIEELHLSDNHF-RIPISLEPLFNHSRLKIFDAENNELNAEITE 242
            L  L  I           R  ++       +R     A +  + A   E
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (269), Expect = 5e-25
 Identities = 95/502 (18%), Positives = 169/502 (33%), Gaps = 79/502 (15%)

Query: 8   SKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSL-HISL----L 62
           +++     ++ S    Y   + +   A     E                   + L    L
Sbjct: 24  TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83

Query: 63  QSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTP 122
            S+  L P L++L  S   +  +   +     KSL   N            L+ + +  P
Sbjct: 84  SSLPELPPHLESLVASCNSLTEL--PELPQSLKSLLVDNNN----------LKALSDLPP 131

Query: 123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVS 182
            L+YL +S+  L           L +   L+ +   NN L+  LP       SL  +   
Sbjct: 132 LLEYLGVSNNQLEKLPE------LQNSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAG 181

Query: 183 SNQLTGSIASSPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAENNELNAEIT 241
           +NQL        L +L  +  ++  +N  + +P           L+   A NN L  E+ 
Sbjct: 182 NNQLE---ELPELQNLPFLTAIYADNNSLKKLPDLP------LSLESIVAGNNILE-ELP 231

Query: 242 ESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNT 301
           E  +L      L  +          T P        LE +++    +  + P        
Sbjct: 232 ELQNLP----FLTTIYAD--NNLLKTLPDLPPS---LEALNVRDNYLT-DLPELP----Q 277

Query: 302 KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA 361
            L  L +  +  +G   LP      L  L+ S+N  +      + D+ P+L   N+S N 
Sbjct: 278 SLTFLDVSENIFSGLSELP----PNLYYLNASSNEIR-----SLCDLPPSLEELNVSNNK 328

Query: 362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSG 421
           L   +P+       L+ L  S N L  E+PE        L  L +  N L  +   +   
Sbjct: 329 LI-ELPALPPR---LERLIASFNHLA-EVPELPQ----NLKQLHVEYNPLR-EFPDIPES 378

Query: 422 L-DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 480
           + DL  N  +  +P    NL   + L++  N L    P    +++    L ++  ++   
Sbjct: 379 VEDLRMNSHLAEVPELPQNL---KQLHVETNPLREF-PDIPESVED---LRMNSERVVDP 431

Query: 481 IPHQLVELKTLEVFSLAFNNLS 502
                     LE      ++  
Sbjct: 432 YEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (253), Expect = 5e-23
 Identities = 86/400 (21%), Positives = 141/400 (35%), Gaps = 78/400 (19%)

Query: 110 NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWC 169
             +  ++          L L++  LS+              HL+ L    N L   LP  
Sbjct: 59  EMAVSRLRDCLDRQAHELELNNLGLSSLPE--------LPPHLESLVASCNSLT-ELPEL 109

Query: 170 VANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF 229
             ++ SL + + +   L+             +E L +S+N       L  L N S LKI 
Sbjct: 110 PQSLKSLLVDNNNLKALSDLP--------PLLEYLGVSNNQLE---KLPELQNSSFLKII 158

Query: 230 DAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMN 289
           D +NN L                                P        LE++   + ++ 
Sbjct: 159 DVDNNSLK-----------------------------KLPDLPPS---LEFIAAGNNQLE 186

Query: 290 GEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDIL 349
            E P   L+N   L  ++  N+SL     LP+     L  +   NN        E+ + L
Sbjct: 187 -ELPE--LQNLPFLTAIYADNNSLKKLPDLPLS----LESIVAGNNIL--EELPELQN-L 236

Query: 350 PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN 409
           P L +     N L  ++P    +   L+ L++ +N LT ++PE       +LD      +
Sbjct: 237 PFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ-SLTFLDVSENIFS 290

Query: 410 SLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 469
            L  ++   L  L+ S N+ I  +     +L     LN+S+N L  L P+    L   E 
Sbjct: 291 GLS-ELPPNLYYLNASSNE-IRSLCDLPPSLE---ELNVSNNKLIEL-PALPPRL---ER 341

Query: 470 LDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWK 509
           L  S+N L  ++P     LK L V               +
Sbjct: 342 LIASFNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVE 380

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 3e-21
 Identities = 73/398 (18%), Positives = 139/398 (34%), Gaps = 71/398 (17%)

Query: 127 LSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVAN-------------M 173
             L +    +++   +     ++    E Y   ++   + P                   
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAE 232
                L++++  L+ S+          +E L  S N    +P   + L     L + +  
Sbjct: 71  RQAHELELNNLGLS-SLPEL----PPHLESLVASCNSLTELPELPQSL---KSLLVDNNN 122

Query: 233 NNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEF 292
              L+               L+YL +S         P+       L+ +D+ +  +  + 
Sbjct: 123 LKALSDLPP----------LLEYLGVS--NNQLEKLPELQNSSF-LKIIDVDNNSLK-KL 168

Query: 293 PNWLLENNTKLKTLFLVNDSLAGPFRLP-IHSHKRLRQLDVSNNNFQGHIPLEIGDILPN 351
           P+        L+ +   N+ L     LP + +   L  +   NN+ +     ++ D+  +
Sbjct: 169 PDLP----PSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLK-----KLPDLPLS 216

Query: 352 LISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL 411
           L S     N L         N+  L  +   NN L   +P+        L+ L + +N L
Sbjct: 217 LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP----SLEALNVRDNYL 269

Query: 412 EG--KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 469
               ++   L+ LD+S N     +     NL     LN S N +  L          +E 
Sbjct: 270 TDLPELPQSLTFLDVSENIFS-GLSELPPNLY---YLNASSNEIRSLC----DLPPSLEE 321

Query: 470 LDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
           L++S NKL  ++P        LE    +FN+L+ E+PE
Sbjct: 322 LNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE 354

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 3e-21
 Identities = 75/363 (20%), Positives = 127/363 (34%), Gaps = 74/363 (20%)

Query: 147 CSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHL 206
            S   LQE  + +++L   +P    N+ S      + ++   +           +    L
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRL 65

Query: 207 SDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGA 266
            D   R            +    +  N  L+                             
Sbjct: 66  RDCLDR------------QAHELELNNLGLS----------------------------- 84

Query: 267 TFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKR 326
           + P+   H   LE +  S   +  E P         LK+L + N++L     LP      
Sbjct: 85  SLPELPPH---LESLVASCNSLT-ELPELP----QSLKSLLVDNNNLKALSDLP----PL 132

Query: 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQL 386
           L  L VSNN  +  +P E+ +    L   ++  N+L   +P    +   L+ +   NNQL
Sbjct: 133 LEYLGVSNNQLE-KLP-ELQN-SSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQL 185

Query: 387 TGEIPEHLAVGCVYLDFLALSNNSLEG--KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ 444
             E+PE       +L  +   NNSL+    +   L  +    N L     P++ NL  + 
Sbjct: 186 E-ELPEL--QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLT 240

Query: 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504
           T+   +N L  L P    +L+   +L++  N L   +P     L  L+V    F+ LS  
Sbjct: 241 TIYADNNLLKTL-PDLPPSLE---ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSEL 295

Query: 505 IPE 507
            P 
Sbjct: 296 PPN 298

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (253), Expect = 9e-23
 Identities = 85/474 (17%), Positives = 152/474 (32%), Gaps = 54/474 (11%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSI-ASLFPSLKN 74
            L  L  L L HN              +   L         +  + LQ+I      SL++
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL--------DVSHNRLQNISCCPMASLRH 125

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTL 134
           L +S+ + + +   + F +   L  L +  A         +        + +L LS   L
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA---------KFRQLDLLPVAHLHLSCILL 176

Query: 135 STNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSP 194
              S  I      SL                        T++  L    N L     +  
Sbjct: 177 DLVSYHIKGGETESLQIPN--------------------TTVLHLVFHPNSLFSVQVNMS 216

Query: 195 LAHLTSIEELHLSDNHF---RIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNF 251
           +  L  ++  ++  N     R+   L  L     L     ++ E   + +          
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 252 QLQYLLLSS-GYGDGATFPKFLYHQHDLEYVDLSHTKMNG--EFPNWLLENNTKLKTLFL 308
            ++YL + +    +     +F Y +  L+ + + H K          L     ++    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 309 VNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS 368
                     +   S      L+ + N F      +    L  L +  +  N L  +   
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFK 394

Query: 369 SFG---NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSG---- 421
                 N++ L+ LD+S N L     +        +  L LS+N L G V   L      
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV 454

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
           LDL  N++   IP  + +L  +Q LN++ N L  +    F  L  ++ + L  N
Sbjct: 455 LDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 95.3 bits (237), Expect = 9e-21
 Identities = 74/405 (18%), Positives = 128/405 (31%), Gaps = 37/405 (9%)

Query: 120 STPSLKYLSLSDFTLSTNSSRILDRGLC-SLMHLQELYKVNNDLRGSLPWCVANMTSLRI 178
               L+ L LS   + +     LD  +      L+ L   +N L+ ++      M SLR 
Sbjct: 74  FLSELRVLRLSHNRIRS-----LDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRH 125

Query: 179 LDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPL-FNHSRLKIFDAENNELN 237
           LD+S N            +LT +  L LS   FR    L+ L   H  L     +    +
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYH 182

Query: 238 AEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLL 297
            +  E+ SL  PN  + +L+              +     L+  ++     N +     L
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 298 EN---NTKLKTLFLVNDSLAGPFRLPIHS---HKRLRQLDVSNNNFQGHIPLEIGDI--- 348
                   L  + L +        + +      + +  L++ N      I  E       
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 349 -LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALS 407
            L +L+  ++       S  + +     + I  LS +     I            FL  +
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFT 361

Query: 408 NN---SLEGKV---LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 461
            N       +    L  L  L L  N L  +          + +L     +L  L    +
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 462 SNL----KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
                  + I  L+LS N L G +   L     ++V  L  N + 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 53/336 (15%), Positives = 113/336 (33%), Gaps = 22/336 (6%)

Query: 13  SMGSLPSLNT--LYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLF- 69
              SL   NT  L+L  +  +  +      ++   +L+ S +  +  +   L +  S   
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 70  --PSLKNLSMSYCEV--NGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPS 123
             P+L N+++ + E      V+   F   + +E+LN+    I    +         +  S
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 124 LKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSS 183
           L    + +     +   +          +       +D       C  + +S   L+ + 
Sbjct: 307 LMIEHVKNQVFLFSKEALYS----VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 184 NQLTGSIASSPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAENNELNAEITE 242
           N  T        + L  ++ L L  N  +          N S L+  D   N LN+   +
Sbjct: 363 NVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421

Query: 243 SYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTK 302
                     +  L LSS    G+ F         ++ +DL + ++    P   + +   
Sbjct: 422 R--TCAWAESILVLNLSSNMLTGSVFRCLPPK---VKVLDLHNNRIM-SIPK-DVTHLQA 474

Query: 303 LKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQ 338
           L+ L + ++ L             L+ + + +N + 
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 46/234 (19%), Positives = 85/234 (36%), Gaps = 32/234 (13%)

Query: 1   NVKIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHIS 60
           N+ I +     +   S  +L +L ++H        +       F  +    LS S     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-F 343

Query: 61  LLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGES 120
           +         S   L+ +       V   G    K L+ L ++R  +         +   
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGL----KNFFKVALM 398

Query: 121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLM-----------------------HLQELYK 157
           T ++  L   D +L++ +S   DR  C+                          ++ L  
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDR-TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDL 457

Query: 158 VNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
            NN +  S+P  V ++ +L+ L+V+SNQL  S+       LTS++ + L DN +
Sbjct: 458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.2 bits (245), Expect = 1e-22
 Identities = 40/186 (21%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 326 RLRQLDVSNNNFQ-GHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
           +L +L +S+N         +      +L   ++S N +  ++ S+F  +  L+ LD  ++
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHS 111

Query: 385 QLTGEIPEHLA-VGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQI 437
            L  ++ E    +    L +L +S+             LS L  L ++ N    +  P I
Sbjct: 112 NLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 438 -GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSL 496
              L  +  L+LS   L  L P+ F++L  ++ L++S+N            L +L+V   
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 497 AFNNLS 502
           + N++ 
Sbjct: 231 SLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 17/213 (7%)

Query: 278 LEYVDLSHTKMN-GEFPNWLLENNTKLKTLFLVN---DSLAGPFRLPIHSHKRLRQLDVS 333
           L  + LS   ++     +      T LK L L      +++  F       ++L  LD  
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL----GLEQLEHLDFQ 109

Query: 334 NNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEH 393
           ++N +      +   L NLI  +IS      +    F  ++ L++L ++ N         
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 394 LAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTL 446
           +      L FL LS   LE         LS L  L++S N     +       L  +Q L
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVL 228

Query: 447 NLSHNNLTGLIPSTFSNL-KHIESLDLSYNKLN 478
           + S N++         +    +  L+L+ N   
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 15/189 (7%)

Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLT 387
            ++  ++      +P     I  +     +  N L       F  +  L  L LS+N L+
Sbjct: 10  TEIRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 388 -GEIPEHLAVGCVYLDFLALSNNSLEG-----KVLSLLSGLDLSCNKLIGHIPPQ--IGN 439
                     G   L +L LS N +         L  L  LD   +  +  +       +
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS 124

Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ-LVELKTLEVFSLAF 498
           L  +  L++SH +        F+ L  +E L ++ N            EL+ L    L+ 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 499 NNLSGEIPE 507
             L  ++  
Sbjct: 185 CQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 53/297 (17%), Positives = 96/297 (32%), Gaps = 49/297 (16%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASL-FPSLK 73
           G   S   L L+ N      +         T L   +LS + L      S +     SLK
Sbjct: 25  GIPSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81

Query: 74  NLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSD 131
            L +S+  V  +     F   + LEHL+ + + +      S       S  +L YL +S 
Sbjct: 82  YLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFL----SLRNLIYLDIS- 134

Query: 132 FTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIA 191
                                      +   R +       ++SL +L ++ N    +  
Sbjct: 135 ---------------------------HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 192 SSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNF 251
                 L ++  L LS       +S     + S L++ +  +N   +  T  Y       
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--- 223

Query: 252 QLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSH-----TKMNGEFPNWLLENNTKL 303
            LQ L  S  +   +   +  +    L +++L+      T  +  F  W+ +    L
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 420 SGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
           SG ++ CN   +  +P  I   +    L L  N L  L    F  L  +  L LS N L+
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 479 GK--IPHQLVELKTLEVFSLAFNNLS 502
            K           +L+   L+FN + 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI 91

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 97.3 bits (242), Expect = 2e-22
 Identities = 62/291 (21%), Positives = 96/291 (32%), Gaps = 25/291 (8%)

Query: 233 NNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEF 292
           ++  N        L      L+YLL              +     L+ + +   ++    
Sbjct: 25  SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRI 84

Query: 293 PNWLLE--NNTKLKTLFLVNDSLAGPFRLPIH--SHKRLRQLDVSNNNFQG---HIPLEI 345
               L     + L+ L L N  + G    P+   +   L  L++ N ++      +    
Sbjct: 85  LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 346 GDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV---GCVYLD 402
             + P L   +I+                 L  LDLS+N   GE     A+       L 
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 403 FLALSNNSLEG---------KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNN 452
            LAL N  +E               L GLDLS N L            +++ +LNLS   
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 453 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG 503
           L  +     + L     LDLSYN+L+   P    EL  +   SL  N    
Sbjct: 265 LKQVPKGLPAKL---SVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 95.0 bits (236), Expect = 1e-21
 Identities = 61/301 (20%), Positives = 90/301 (29%), Gaps = 17/301 (5%)

Query: 169 CVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKI 228
           C  N +  +    S+    G+          S+E L    +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 229 FDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQH-DLEYVDLSHTK 287
                  + + I            LQ L L +    G   P  L     DL  ++L +  
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 288 MNGEFPNWLLE----NNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPL 343
                  WL E        LK L +            +     L  LD+S+N   G   L
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 344 E---IGDILPNLISFNISMN---ALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVG 397
                    P L    +         G   +       L+ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 398 CVYLDFLALSNNSLE---GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 454
              L+ L LS   L+     + + LS LDLS N+L     P    L ++  L+L  N   
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPFL 309

Query: 455 G 455
            
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 45/249 (18%), Positives = 74/249 (29%), Gaps = 19/249 (7%)

Query: 19  SLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASL-FPSLKNLSM 77
           SL  L ++              +   + L+  TL    +  +    +     P L  L++
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 78  SYCEVNGVVRGQGFPHFKSLEHLNMERARIAPN--TSFLQIIGESTPSLKYLSLSDFTLS 135
                    R       +      ++   IA     +F        P+L  L LSD    
Sbjct: 129 RNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 136 TNSSRILDRGLCSLMHLQELYKVNNDLR---GSLPWCVANMTSLRILDVSSNQLTGSIAS 192
                I          LQ L   N  +    G      A    L+ LD+S N L  +  +
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 193 SPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNF 251
                 + +  L+LS    + +P  L       +L + D   N L+        L     
Sbjct: 247 PSCDWPSQLNSLNLSFTGLKQVPKGLPA-----KLSVLDLSYNRLD-RNPSPDELP---- 296

Query: 252 QLQYLLLSS 260
           Q+  L L  
Sbjct: 297 QVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 24/221 (10%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELH--NFTNLEYSTLSGSSLHISLLQSIASLFPSLK 73
            +  L  L L++   TGTA     E    +   L    +S ++    L +    L P LK
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 74  NLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST-PSLKYLSLSDF 132
            LS++          Q    F +L  L++           +  +     P+L+ L+L + 
Sbjct: 153 VLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDVSSNQLTG--- 188
            + T S  +      + + LQ L   +N LR +         + L  L++S   L     
Sbjct: 212 GMETPSG-VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

Query: 189 --------------SIASSPL-AHLTSIEELHLSDNHFRIP 214
                          +  +P    L  +  L L  N F   
Sbjct: 271 GLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 15/169 (8%)

Query: 355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK 414
           ++ + N L  +    +G    L+ L    +           +  + L  L +    +  +
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 415 VL---------SLLSGLDLSCNKLIGHIPPQIGNLT--RIQTLNLSHNNLTGLIPSTFS- 462
           +L         S L  L L   ++ G  PP +   T   +  LNL + +           
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 463 ---NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508
                  ++ L ++          Q+     L    L+ N   GE    
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 15/193 (7%)

Query: 1   NVKIRDGSKLLQSMGSL--PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLH 58
           NV        L  +     P L  L +   +    +    +     + L+ S        
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 59  ISLLQSIASLFPSLKNLSMSYCEVNGV--VRGQGFPHFKSLEHLNMERARIAPNTSFLQI 116
             +       FP+L+ L++    +     V          L+ L++    +    +    
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL--RDAAGAP 247

Query: 117 IGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSL 176
             +    L  L+LS         + + +GL +   L  L    N L    P     +  +
Sbjct: 248 SCDWPSQLNSLNLSF-----TGLKQVPKGLPA--KLSVLDLSYNRLD-RNPSP-DELPQV 298

Query: 177 RILDVSSNQLTGS 189
             L +  N    S
Sbjct: 299 GNLSLKGNPFLDS 311

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 20/235 (8%)

Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSL----AGPFRLPIHSHKRLRQLDV 332
           D   +DL + K+  E  +   +N   L TL L+N+ +     G F        +L +L +
Sbjct: 53  DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAF----APLVKLERLYL 107

Query: 333 SNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLT-GEIP 391
           S N  +  +P     +   L    +  N +     S F  +N + +++L  N L    I 
Sbjct: 108 SKNQLK-ELP---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 392 EHLAVGCVYLDFLALSNN---SLEGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLN 447
                G   L ++ +++    ++   +   L+ L L  NK I  +       L  +  L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLG 222

Query: 448 LSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
           LS N+++ +   + +N  H+  L L+ NKL  K+P  L + K ++V  L  NN+S
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 52/322 (16%), Positives = 105/322 (32%), Gaps = 62/322 (19%)

Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN 233
               +LD+ +N++T  I      +L ++  L L +N     IS        +L+      
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSK 109

Query: 234 NELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFP 293
           N+L               +L   +  +                 L+ + +   ++  +  
Sbjct: 110 NQLK--------------ELPEKMPKT-----------------LQELRVHENEIT-KVR 137

Query: 294 NWLLENNTKLKTLFLVNDSLAGPFRLPIHSH-----KRLRQLDVSNNNFQGHIPLEIGDI 348
             +     ++  + L  + L       I +      K+L  + +++ N    IP     +
Sbjct: 138 KSVFNGLNQMIVVELGTNPLK---SSGIENGAFQGMKKLSYIRIADTNIT-TIP---QGL 190

Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
            P+L   ++  N +     +S   +N L  L LS N ++  +         +L  L L+N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNN 249

Query: 409 NSLEG-----KVLSLLSGLDLSCNKLIGHIPPQ-------IGNLTRIQTLNLSHNNL--T 454
           N L            +  + L  N  I  I                   ++L  N +   
Sbjct: 250 NKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 455 GLIPSTFSNLKHIESLDLSYNK 476
            + PSTF  +    ++ L   K
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 46/260 (17%), Positives = 99/260 (38%), Gaps = 40/260 (15%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHIS--LLQSI-ASLF 69
              +L +L+TL L +N  +     +         LE        L++S   L+ +   + 
Sbjct: 71  DFKNLKNLHTLILINNKIS---KISPGAFAPLVKLER-------LYLSKNQLKELPEKMP 120

Query: 70  PSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA----PNTSFLQIIGESTPSLK 125
            +L+ L +   E+  V +   F     +  + +    +      N +F     +    L 
Sbjct: 121 KTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAF-----QGMKKLS 174

Query: 126 YLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQ 185
           Y+ ++D      +   + +GL     L EL+   N +       +  + +L  L +S N 
Sbjct: 175 YIRIAD-----TNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 186 LTGSIASSPLAHLTSIEELHLSDNHF-RIPISLEPLFNHSRLKIFDAENNELNAEITESY 244
           ++ ++ +  LA+   + ELHL++N   ++P     L +H  +++    NN ++  I  + 
Sbjct: 228 IS-AVDNGSLANTPHLRELHLNNNKLVKVP---GGLADHKYIQVVYLHNNNIS-AIGSND 282

Query: 245 SLTTPNF----QLQYLLLSS 260
                          + L S
Sbjct: 283 FCPPGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 38/208 (18%), Positives = 81/208 (38%), Gaps = 27/208 (12%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA-SLFPSLK 73
               +L  L +  N  T    +    L+    +E   L  + L  S +++ A      L 
Sbjct: 118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE---LGTNPLKSSGIENGAFQGMKKLS 174

Query: 74  NLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSD 131
            + ++   +  + +G       SL  L+++  +I      S      +   +L  L LS 
Sbjct: 175 YIRIADTNITTIPQG----LPPSLTELHLDGNKITKVDAASL-----KGLNNLAKLGLSF 225

Query: 132 FTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIA 191
            ++    S + +  L +  HL+EL+  NN L   +P  +A+   ++++ + +N ++ +I 
Sbjct: 226 NSI----SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIG 279

Query: 192 SS------PLAHLTSIEELHLSDNHFRI 213
           S+            S   + L  N  + 
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
           L  +  S   L   +P  +        L+L +N +T +    F NLK++ +L L  NK++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 479 GKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
              P     L  LE   L+ N L  E+PE
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPE 117

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 35/202 (17%), Positives = 61/202 (30%), Gaps = 68/202 (33%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
           G  PSL  L+L  N                T ++ ++L G                +L  
Sbjct: 189 GLPPSLTELHLDGN--------------KITKVDAASLKG--------------LNNLAK 220

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTL 134
           L +S+  ++ V                        N S       +TP L+ L L++   
Sbjct: 221 LGLSFNSISAV-----------------------DNGSL-----ANTPHLRELHLNN--- 249

Query: 135 STNSSRILDRGLCSLMHLQELYKVNNDLRG------SLPWCVANMTSLRILDVSSNQLT- 187
             N    +  GL    ++Q +Y  NN++          P       S   + + SN +  
Sbjct: 250 --NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 188 GSIASSPLAHLTSIEELHLSDN 209
             I  S    +     + L + 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 12/235 (5%)

Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 336
           D   +DL +  ++ E      +    L  L LVN+ ++          ++L++L +S N+
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 337 FQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV 396
               IP    ++  +L+   I  N +       F  +  +  +++  N L     E  A 
Sbjct: 114 LV-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 397 GCVYLDFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNN 452
             + L++L +S   L G    +   L+ L L  NK I  I  +     +++  L L HN 
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 453 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
           +  +   + S L  +  L L  NKL+ ++P  L +LK L+V  L  NN++ ++  
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 51/319 (15%), Positives = 95/319 (29%), Gaps = 57/319 (17%)

Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN 233
               +LD+ +N ++  +       L  +  L L +N     I  +      +L+      
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISK 111

Query: 234 NELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFP 293
           N L               ++   L SS                 L  + +   ++  + P
Sbjct: 112 NHLV--------------EIPPNLPSS-----------------LVELRIHDNRIR-KVP 139

Query: 294 NWLLENNTKLKTLFLVNDSLA-GPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNL 352
             +      +  + +  + L    F        +L  L +S       IP    D+   L
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP---KDLPETL 195

Query: 353 ISFNISMNALDGSIPS-SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL 411
              ++  N +  +I        + L  L L +NQ+   I          L  L L NN L
Sbjct: 196 NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL 253

Query: 412 EG-----KVLSLLSGLDLSCNKLIGHIPPQI-------GNLTRIQTLNLSHNNLT--GLI 457
                    L LL  + L  N  I  +                   ++L +N +    + 
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 458 PSTFSNLKHIESLDLSYNK 476
           P+TF  +    ++     K
Sbjct: 313 PATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 44/276 (15%), Positives = 90/276 (32%), Gaps = 26/276 (9%)

Query: 17  LPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLS 76
           L  L  L L +N  +       +       L+   +S +  H+  +    +L  SL  L 
Sbjct: 77  LQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISKN--HLVEIP--PNLPSSLVELR 129

Query: 77  MSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLST 136
           +    +  V +G  F   +++  + M    +  +                L L+   +S 
Sbjct: 130 IHDNRIRKVPKGV-FSGLRNMNCIEMGGNPLENSG-----FEPGA--FDGLKLNYLRISE 181

Query: 137 NSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLA 196
                + + L     L EL+  +N ++      +   + L  L +  NQ+   I +  L+
Sbjct: 182 AKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLS 238

Query: 197 HLTSIEELHLSDNHF-RIPISLEPLFNHSRLKIFDAENN---ELNAEITESYSLTTPNFQ 252
            L ++ ELHL +N   R+P     L +   L++     N   ++                
Sbjct: 239 FLPTLRELHLDNNKLSRVP---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295

Query: 253 LQYLLLSSGYGDGATFPKFLYHQ-HDLEYVDLSHTK 287
              + L +            +    D   +   + K
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 26/203 (12%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
               SL  L +  N            L N   +E   + G+ L  S  +  A     L  
Sbjct: 120 NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE---MGGNPLENSGFEPGAFDGLKLNY 176

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDF 132
           L +S  ++ G+ +       ++L  L+++  +I                  L  L L   
Sbjct: 177 LRISEAKLTGIPKD----LPETLNELHLDHNKIQAIELEDL-----LRYSKLYRLGLGH- 226

Query: 133 TLSTNSSRILDRGLCS-LMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLT---- 187
               N  R+++ G  S L  L+EL+  NN L   +P  + ++  L+++ + +N +T    
Sbjct: 227 ----NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281

Query: 188 GSIAS-SPLAHLTSIEELHLSDN 209
                            + L +N
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNN 304

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
           L  +  S   L   +P +I        L+L +N+++ L    F  L+H+ +L L  NK++
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 479 GKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
                    L+ L+   ++ N+L  EIP 
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIPP 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.8 bits (236), Expect = 8e-21
 Identities = 60/365 (16%), Positives = 117/365 (32%), Gaps = 46/365 (12%)

Query: 152 LQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
                    +++ +       + +L  LD  ++ +T     + +  LT + +L  + N+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN- 75

Query: 212 RIPISLEPLFNHSRLKIFDAENNELNA-EITESYSLTTPNFQLQYLLLSSGYGDGATFPK 270
              I+   L  ++ L     ++N+L   ++T    LT          L+           
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTY--LNCDTNKLTKLDVSQNPLLT 130

Query: 271 FLY------------HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFR 318
           +L             H   L  +D    K   +     +   T+L TL    + +     
Sbjct: 131 YLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--- 184

Query: 319 LPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKI 378
           L +  +K L +L+   NN      L++      L   + S N L   I      +  L  
Sbjct: 185 LDVSQNKLLNRLNCDTNNITK---LDLNQ-NIQLTFLDCSSNKLT-EID--VTPLTQLTY 237

Query: 379 LDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGL-DLSCNKLIGHIPPQI 437
            D S N LT E+          L  L      L    L+  + L               +
Sbjct: 238 FDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV 293

Query: 438 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA 497
            + T++  L+     +T L     S    +  L L+  +L  ++   +     L+  S  
Sbjct: 294 THNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCV 347

Query: 498 FNNLS 502
             ++ 
Sbjct: 348 NAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.2 bits (206), Expect = 5e-17
 Identities = 78/495 (15%), Positives = 140/495 (28%), Gaps = 64/495 (12%)

Query: 46  NLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERA 105
           N      +   +  +   S   L  +L +L      +  +    G      L  L     
Sbjct: 19  NFASEVAAAFEMQATDTISEEQL-ATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSN 74

Query: 106 RIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS 165
            I        +      +L YL+     L+          +  L  L  L    N L   
Sbjct: 75  NIT------TLDLSQNTNLTYLACDSNKLTNLD-------VTPLTKLTYLNCDTNKLT-K 120

Query: 166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSR 225
           L   V+    L  L+ + N LT       ++H T + EL    N     I+   +   ++
Sbjct: 121 LD--VSQNPLLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKK---ITKLDVTPQTQ 171

Query: 226 LKIFDAENNELNAEITESYSLTTPNF-QLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLS 284
           L   D   N++         L       L  L   +         + +     L ++D S
Sbjct: 172 LTTLDCSFNKIT-------ELDVSQNKLLNRLNCDTNNITKLDLNQNI----QLTFLDCS 220

Query: 285 HTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLE 344
             K+  E     +   T+L       + L     L + +  +L  L     +      L 
Sbjct: 221 SNKLT-EID---VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTD------LL 267

Query: 345 IGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFL 404
             D+  N                    +   L +LD     +T E+          L +L
Sbjct: 268 EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELDLS---QNPKLVYL 323

Query: 405 ALSNN---SLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 461
            L+N     L+    + L  L      +       +G +  +     +      +   T 
Sbjct: 324 YLNNTELTELDVSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETL 381

Query: 462 SNLKHIESLDLSYNKLNG---KIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNES 518
           +N     ++        G    I      +      ++ + NLS + P     F + N +
Sbjct: 382 TNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGA 441

Query: 519 SYEGNTFLCGLPLPI 533
                T     P PI
Sbjct: 442 IVGTVTTPFEAPQPI 456

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 34/264 (12%), Positives = 69/264 (26%), Gaps = 56/264 (21%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSG---SSLHISLLQSIASL--- 68
                L  L    N        T  ++   T L     S    + L +S  + +  L   
Sbjct: 145 SHNTQLTELDCHLNKK-----ITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCD 199

Query: 69  -----------FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQII 117
                         L  L  S  ++  +           L + +     +       ++ 
Sbjct: 200 TNNITKLDLNQNIQLTFLDCSSNKLTEI----DVTPLTQLTYFDCSVNPLT------ELD 249

Query: 118 GESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLR 177
             +   L  L      L           L     L             L   V + T L 
Sbjct: 250 VSTLSKLTTLHCIQTDLLEID-------LTHNTQLIYFQAEGCRKIKELD--VTHNTQLY 300

Query: 178 ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAENNEL 236
           +LD  +  +T       L+    +  L+L++     + +S     ++++LK     N  +
Sbjct: 301 LLDCQAAGIT----ELDLSQNPKLVYLYLNNTELTELDVS-----HNTKLKSLSCVNAHI 351

Query: 237 NAEITESYSLTTPNFQLQYLLLSS 260
             + +    +      L     + 
Sbjct: 352 Q-DFSSVGKIP----ALNNNFEAE 370

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.0 bits (228), Expect = 1e-19
 Identities = 46/247 (18%), Positives = 85/247 (34%), Gaps = 30/247 (12%)

Query: 278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNF 337
              + L+   ++   P+ L      +  L +  ++L     LP      L  LD  +N  
Sbjct: 61  FSELQLNRLNLS-SLPDNLPPQ---ITVLEITQNALI---SLP-ELPASLEYLDACDNRL 112

Query: 338 QGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVG 397
              +P        +L   ++  N L   +P        L+ ++  NNQLT  +PE     
Sbjct: 113 S-TLPELPA----SLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPT-- 160

Query: 398 CVYLDFLALSNNSLEG--KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQT----LNLSHN 451
              L+ L++ NN L    ++   L  LD+S N L   +P         +          N
Sbjct: 161 --SLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217

Query: 452 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQ 511
            +T + P    +L    ++ L  N L+ +I   L +      +       S    +    
Sbjct: 218 RITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 512 FATFNES 518
                ++
Sbjct: 277 HRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 3e-16
 Identities = 61/356 (17%), Positives = 103/356 (28%), Gaps = 68/356 (19%)

Query: 165 SLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHS 224
           S+   + N  SL   +   N ++    +   +     E+  L   +    +SL      +
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 225 RLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLS 284
           +          L                             ++ P  L  Q  +  ++++
Sbjct: 60  QFSELQLNRLNL-----------------------------SSLPDNLPPQ--ITVLEIT 88

Query: 285 HTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLE 344
              +    P         L+ L   ++ L+    LP      L+ LDV NN     +P  
Sbjct: 89  QNAL-ISLPELP----ASLEYLDACDNRLS---TLP-ELPASLKHLDVDNNQLT-MLPEL 138

Query: 345 IGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFL 404
                  L   N   N L   +P    +   L++L + NNQLT  +PE        L+ L
Sbjct: 139 PA----LLEYINADNNQL-TMLPELPTS---LEVLSVRNNQLT-FLPELPE----SLEAL 185

Query: 405 ALSNNSLEG---------KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 455
            +S N LE                       N+ I HIP  I +L    T+ L  N L+ 
Sbjct: 186 DVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSS 244

Query: 456 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQ 511
            I  + S               +     Q        +                +Q
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 59/322 (18%), Positives = 112/322 (34%), Gaps = 49/322 (15%)

Query: 17  LPSLNTLYLKHNNFTGTATTTTQEL--HNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
           +   + L L   N +         L  +    +    ++ ++     L S+  L  SL+ 
Sbjct: 58  INQFSELQLNRLNLS--------SLPDNLPPQITVLEITQNA-----LISLPELPASLEY 104

Query: 75  LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTL 134
           L      ++ +          SL+HL+++  +       L ++ E    L+Y++  +  L
Sbjct: 105 LDACDNRLSTL-----PELPASLKHLDVDNNQ-------LTMLPELPALLEYINADNNQL 152

Query: 135 STNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSP 194
           +                L+ L   NN L   LP       SL  LDVS+N L  S+ + P
Sbjct: 153 TMLPE--------LPTSLEVLSVRNNQLT-FLP---ELPESLEALDVSTNLLE-SLPAVP 199

Query: 195 --LAHLTSIE-ELHLSDNHFR-IPISLEPLFNHSRLKIFDAENNELNAEITESYSLTT-- 248
               H    E      +N    IP +   + +         E+N L++ I ES S  T  
Sbjct: 200 VRNHHSEETEIFFRCRENRITHIPEN---ILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

Query: 249 PNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFL 308
           P++    +  S   G   T  + L       + +   + ++  +  +  E +    + FL
Sbjct: 257 PDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316

Query: 309 VNDSLAGPFRLPIHSHKRLRQL 330
              S     R      +++   
Sbjct: 317 DRLSDTVSARNTSGFREQVAAW 338

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 33/215 (15%), Positives = 68/215 (31%), Gaps = 37/215 (17%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
              SL  L    N      +T  +   +  +L         +  + L  +  L   L+ +
Sbjct: 98  LPASLEYLDACDNRL----STLPELPASLKHL--------DVDNNQLTMLPELPALLEYI 145

Query: 76  SMSYCEVNGVVRGQGFPH-FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTL 134
           +    ++         P    SLE L++   +       L  + E   SL+ L +S   L
Sbjct: 146 NADNNQL------TMLPELPTSLEVLSVRNNQ-------LTFLPELPESLEALDVSTNLL 192

Query: 135 STNSSRILDRGLCSLMHLQELYKV----NNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
            +     L        H +E         N +   +P  + ++     + +  N L+ S 
Sbjct: 193 ES-----LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SR 245

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSR 225
               L+  T+  + H    +F +    +   +   
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.2 bits (224), Expect = 2e-19
 Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 20/236 (8%)

Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSL----AGPFRLPIHSHKRLRQLDV 332
           +   ++L   ++         ++   L+ L L  + +     G F         L  L++
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN----GLANLNTLEL 119

Query: 333 SNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLS-NNQLTGEIP 391
            +N     IP      L  L    +  N ++     +F  I  L+ LDL    +L+  I 
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YIS 177

Query: 392 EHLAVGCVYLDFLALSNNSL----EGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTL 446
           E    G   L +L L+  +L        L  L  LDLS N  +  I P     L  +Q L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKL 236

Query: 447 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAFNNL 501
            +  + +  +  + F NL+ +  ++L++N L   +PH L   L  LE   L  N  
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 16/185 (8%)

Query: 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQ 385
           +  ++     N +  +P     I  N    N+  N +     +SF ++  L+IL LS N 
Sbjct: 44  QFSKVICVRKNLR-EVP---DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 386 LTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQI-G 438
           +   I      G   L+ L L +N L          LS L  L L  N  I  IP     
Sbjct: 100 IR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFN 157

Query: 439 NLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA 497
            +  ++ L+L     L+ +    F  L ++  L+L+   L  +IP+ L  L  L+   L+
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLS 215

Query: 498 FNNLS 502
            N+LS
Sbjct: 216 GNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 34/148 (22%), Positives = 50/148 (33%), Gaps = 12/148 (8%)

Query: 367 PSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLS 420
           PS     N    +      L  E+P+ ++     L+   L  N ++       K L  L 
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLE 91

Query: 421 GLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479
            L LS N  I  I       L  + TL L  N LT +    F  L  ++ L L  N +  
Sbjct: 92  ILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150

Query: 480 KIPHQLVELKTLEVFSLAFNNLSGEIPE 507
              +    + +L    L        I E
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISE 178

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 64/316 (20%), Positives = 112/316 (35%), Gaps = 57/316 (18%)

Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN 233
           T+ R+L++  NQ+   I  +   HL  +E L LS NH R  I +      + L   +  +
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFD 121

Query: 234 NELNAEITES--YSLTTPNFQLQYLLLS----SGYGDGATFPKFLYHQHDLEYVDLSHTK 287
           N L   I       L+    +L+ L L           A     +     L  +DL   K
Sbjct: 122 NRL-TTIPNGAFVYLS----KLKELWLRNNPIESIPSYA--FNRIPS---LRRLDLGELK 171

Query: 288 MNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNFQGHIPLEIG 346
                     E  + L+ L L   +L     +P  +   +L +LD+S N+    I     
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLS-AIRPGSF 227

Query: 347 DILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLAL 406
             L +L    +  + +     ++F N+  L  ++L++N LT  +P  L     +L+ + L
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHL 286

Query: 407 SNN---------------------------------SLEGKVLSLLSGLDLSCNKLIGHI 433
            +N                                 +L+G+ +  L     +C   +   
Sbjct: 287 HHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVE 346

Query: 434 PPQIGNLTRIQTLNLS 449
           PP   N+T      L 
Sbjct: 347 PPADLNVTEGMAAELK 362

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 44/197 (22%), Positives = 72/197 (36%), Gaps = 22/197 (11%)

Query: 17  LPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLF---PSLK 73
           L +LNTL L  N  T             + L+   L      I  + S    F   PSL+
Sbjct: 111 LANLNTLELFDNRLTTIPNGA---FVYLSKLKELWLRN--NPIESIPS--YAFNRIPSLR 163

Query: 74  NLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFT 133
            L +   +    +    F    +L +LN+    +    +           L  L LS   
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL-----TPLIKLDELDLSG-- 216

Query: 134 LSTNSSRILDRG-LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIAS 192
              N    +  G    LMHLQ+L+ + + ++        N+ SL  ++++ N LT  +  
Sbjct: 217 ---NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH 272

Query: 193 SPLAHLTSIEELHLSDN 209
                L  +E +HL  N
Sbjct: 273 DLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 45/223 (20%), Positives = 82/223 (36%), Gaps = 23/223 (10%)

Query: 18  PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA-SLFPSLKNLS 76
            +   L L  N              +  +LE   LS +  HI  ++  A +   +L  L 
Sbjct: 64  TNTRLLNLHENQIQ---IIKVNSFKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNTLE 118

Query: 77  MSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTL 134
           +    +  +  G  F +   L+ L +    I   P+ +F        PSL+ L L +   
Sbjct: 119 LFDNRLTTIPNGA-FVYLSKLKELWLRNNPIESIPSYAF-----NRIPSLRRLDLGEL-- 170

Query: 135 STNSSRILDRG-LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASS 193
                  +  G    L +L+ L     +LR  +P  +  +  L  LD+S N L+ +I   
Sbjct: 171 --KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPG 225

Query: 194 PLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL 236
               L  +++L +  +  ++ I      N   L   +  +N L
Sbjct: 226 SFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 50/248 (20%), Positives = 103/248 (41%), Gaps = 25/248 (10%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRG-LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILD 180
            + + L+L +     N  +I+       L HL+ L    N +R         + +L  L+
Sbjct: 64  TNTRLLNLHE-----NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEP-LFNH-SRLKIFD-AENNELN 237
           +  N+LT +I +    +L+ ++EL L +N      S+    FN    L+  D  E   L 
Sbjct: 119 LFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE---SIPSYAFNRIPSLRRLDLGELKRL- 173

Query: 238 AEITES--YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW 295
           + I+E     L+     L+YL L+    +    P        L+ +DLS   ++      
Sbjct: 174 SYISEGAFEGLS----NLRYLNLA--MCNLREIPNLT-PLIKLDELDLSGNHLS-AIRPG 225

Query: 296 LLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355
             +    L+ L+++   +    R    + + L ++++++NN    +P ++   L +L   
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERI 284

Query: 356 NISMNALD 363
           ++  N  +
Sbjct: 285 HLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 22/220 (10%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
            L  L  L L  N+     T      +   NL    L  + L  ++          LK L
Sbjct: 86  HLRHLEILQLSRNHIR---TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERA-RIA--PNTSFLQIIGESTPSLKYLSLSDF 132
            +    +   +    F    SL  L++    R++     +F     E   +L+YL+L+  
Sbjct: 142 WLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-----EGLSNLRYLNLAMC 195

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIAS 192
            L    +      L  L+ L EL    N L    P     +  L+ L +  +Q+   I  
Sbjct: 196 NLREIPN------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIER 248

Query: 193 SPLAHLTSIEELHLSDNHFRI--PISLEPLFNHSRLKIFD 230
           +   +L S+ E++L+ N+  +       PL +  R+ +  
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 49/282 (17%)

Query: 62  LQSI-ASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIG 118
           L+ +   +  + + L++   ++  +     F H + LE L + R  I      +F     
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAF----- 108

Query: 119 ESTPSLKYLSLSDFTLSTNSSRILDRG-LCSLMHLQELYKVNNDLRGSLPWCVANMTSLR 177
               +L  L L D     N    +  G    L  L+EL+  NN +     +    + SLR
Sbjct: 109 NGLANLNTLELFD-----NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 178 ILDVSS-NQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL 236
            LD+    +L+  I+      L+++  L+L+  + R    +  L    +L   D   N  
Sbjct: 164 RLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGN-- 217

Query: 237 NAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL 296
                           L  +        G+           L+ + +  +++        
Sbjct: 218 ---------------HLSAI------RPGS-----FQGLMHLQKLWMIQSQIQ-VIERNA 250

Query: 297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQ 338
            +N   L  + L +++L             L ++ + +N + 
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 20/211 (9%)

Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSL----AGPFRLPIHSHKRLRQLDV 332
             + + L   +++   P         L  L+L ++ L    A  F         L QLD+
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAF----TGLALLEQLDL 87

Query: 333 SNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGNINLLKILDLSNNQLTGEIP 391
           S+N     +       L  L + ++    L   +    F  +  L+ L L +N L   +P
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALP 145

Query: 392 EHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQ 444
           +        L  L L  N +        + L  L  L L  N+ + H+ P    +L R+ 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLM 204

Query: 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
           TL L  NNL+ L     + L+ ++ L L+ N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 9/183 (4%)

Query: 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQL 386
            +++ +  N    H+P        NL    +  N L     ++F  + LL+ LDLS+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 387 TGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLIGHIPPQI-GN 439
              +      G   L  L L       L   +   L+ L  L L  N  +  +P     +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRD 151

Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN 499
           L  +  L L  N ++ +    F  L  ++ L L  N++    PH   +L  L    L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 500 NLS 502
           NLS
Sbjct: 212 NLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 42/188 (22%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 323 SHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLS 382
            ++            Q  +P     I        +  N +     +SF     L IL L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 383 NNQLTGEIPEHLAVGCVYLDFLALSNN----SLEGKV---LSLLSGLDLSCNKLIGHIPP 435
           +N L   I      G   L+ L LS+N    S++      L  L  L L     +  + P
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGP 122

Query: 436 QI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF 494
            +   L  +Q L L  N L  L   TF +L ++  L L  N+++         L +L+  
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 495 SLAFNNLS 502
            L  N ++
Sbjct: 183 LLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 24/203 (11%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLF---PSL 72
           +  +L  L+L  N                  LE   LS ++  +  +    + F     L
Sbjct: 54  ACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDLSDNA-QLRSVD--PATFHGLGRL 107

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLS 130
             L +  C +  +  G  F    +L++L ++   +   P+ +F         +L +L L 
Sbjct: 108 HTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDDTF-----RDLGNLTHLFLH 161

Query: 131 DFTLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGS 189
                 N  S + +R    L  L  L    N +    P    ++  L  L + +N L+ +
Sbjct: 162 G-----NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-A 215

Query: 190 IASSPLAHLTSIEELHLSDNHFR 212
           + +  LA L +++ L L+DN + 
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 23/222 (10%)

Query: 18  PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA-SLFPSLKNLS 76
            +   ++L  N  +              NL    L  +   ++ + + A +    L+ L 
Sbjct: 32  AASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSN--VLARIDAAAFTGLALLEQLD 86

Query: 77  MSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTL 134
           +S       V    F     L  L+++R  +       F         +L+YL L D   
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-----RGLAALQYLYLQD--- 138

Query: 135 STNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDVSSNQLTGSIAS 192
             N+   + D     L +L  L+   N +  S+P      + SL  L +  N++   +  
Sbjct: 139 --NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHP 194

Query: 193 SPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENN 234
                L  +  L+L  N+    +  E L     L+     +N
Sbjct: 195 HAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 12/136 (8%)

Query: 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGNINLLKILDLSNN 384
           RL  L +     Q  +   +   L  L    +  NAL  ++P  +F ++  L  L L  N
Sbjct: 106 RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN 163

Query: 385 QLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLIGHIPPQI- 437
           +++  +PE    G   LD L L  N    +       L  L  L L  N L   +P +  
Sbjct: 164 RIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEAL 221

Query: 438 GNLTRIQTLNLSHNNL 453
             L  +Q L L+ N  
Sbjct: 222 APLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 48/290 (16%), Positives = 81/290 (27%), Gaps = 84/290 (28%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
            + + + L    +S     +      +  +L  L+  +N L          +  L  LD+
Sbjct: 32  AASQRIFLHGNRISH----VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEIT 241
           S N    S+  +    L  +  LHL     +    L P        +F            
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGP-------GLFR----------- 126

Query: 242 ESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNT 301
               L      LQYL                          L    +    P+    +  
Sbjct: 127 ---GLA----ALQYL-------------------------YLQDNALQ-ALPDDTFRDLG 153

Query: 302 KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA 361
            L  LFL                 R+  +      F+G         L +L    +  N 
Sbjct: 154 NLTHLFL--------------HGNRISSV--PERAFRG---------LHSLDRLLLHQNR 188

Query: 362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL 411
           +    P +F ++  L  L L  N L+  +P         L +L L++N  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 491
            +P  I      Q + L  N ++ +  ++F   +++  L L  N L          L  L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 492 EVFSLAFNNLSGEIP 506
           E   L+ N     + 
Sbjct: 83  EQLDLSDNAQLRSVD 97

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 89.6 bits (223), Expect = 3e-19
 Identities = 84/456 (18%), Positives = 155/456 (33%), Gaps = 62/456 (13%)

Query: 95  KSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQE 154
             ++ L+++   +  + +    +       + + L D  L+    + +   L     L E
Sbjct: 3   LDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 155 LYKVNNDL--RGSLPWCVA---NMTSLRILDVSSNQLT----GSIASSPLAHLTSIEELH 205
           L   +N+L   G              ++ L + +  LT    G ++S+ L  L +++ELH
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 206 LSDNHFRIP----ISLEPLFNHSRLKIFDAENNELNAEITESYSLT-TPNFQLQYLLLSS 260
           LSDN         +    L    RL+    E   L+A   E  +         + L +S+
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 261 ---GYGDGATFPKFLYHQHD-LEYVDLSHTKMNGEFPNWL---LENNTKLKTLFLVNDSL 313
                       + L      LE + L    +  +    L   + +   L+ L L ++ L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 314 --AGPFRL---PIHSHKRLRQLDVSNNNFQGHIPLEIGDIL---PNLISFNISMNALDGS 365
              G   L    +H   RLR L +           ++  +L    +L   +++ N L   
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 366 ----IPSSFGNINL-LKILDLSNNQLTGEIPEHLAVGCVY---LDFLALSNNSLEGKVLS 417
               +  +       L+ L + +   T     H +        L  L +SNN LE   + 
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT----GLIPSTFSNLKHIESLDLS 473
            L                     + ++ L L+  +++      + +T      +  LDLS
Sbjct: 360 ELCQGLGQPG-------------SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406

Query: 474 YNKLNGKIPHQLVE-LK----TLEVFSLAFNNLSGE 504
            N L      QLVE ++     LE   L     S E
Sbjct: 407 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.1 bits (180), Expect = 7e-14
 Identities = 79/447 (17%), Positives = 146/447 (32%), Gaps = 64/447 (14%)

Query: 17  LPSLNTLYLKHNNFTGT-ATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLF----PS 71
           L     + L     T       +  L     L    L  + L    +  +          
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 72  LKNLSMSYCEVNGV---VRGQGFPHFKSLEHLNMERARIAPN--TSFLQIIGESTPSLKY 126
           ++ LS+  C + G    V         +L+ L++    +         + + +    L+ 
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 127 LSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDL--RGSLPWCVA---NMTSLRILDV 181
           L L   +LS  S   L   L +    +EL   NND+   G    C     +   L  L +
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 182 SSNQLTGSIA---SSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNA 238
            S  +T          +A   S+ EL L  N                  + D    EL  
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNK-----------------LGDVGMAEL-- 247

Query: 239 EITESYSLTTPNFQLQYLLLSS---GYGDGATFPKFLYHQHDLEYVDLSHTKMNGE---- 291
                  L  P+ +L+ L +              + L  +  L+ + L+  ++  E    
Sbjct: 248 ----CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 292 FPNWLLENNTKLKTLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNNNFQG----HIPL 343
               LLE   +L++L++ + S        F   +  ++ L +L +SNN  +      +  
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363

Query: 344 EIGDILPNLISFNISMNALD----GSIPSSFGNINLLKILDLSNNQLTGE----IPEHLA 395
            +G     L    ++   +      S+ ++    + L+ LDLSNN L       + E + 
Sbjct: 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 423

Query: 396 VGCVYLDFLALSNNSLEGKVLSLLSGL 422
                L+ L L +     ++   L  L
Sbjct: 424 QPGCLLEQLVLYDIYWSEEMEDRLQAL 450

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 6e-13
 Identities = 80/429 (18%), Positives = 142/429 (33%), Gaps = 83/429 (19%)

Query: 19  SLNTLYLKHNNFTGT-ATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLF----PSLK 73
            +  L L++   TG      +  L     L+   LS + L  + LQ +          L+
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 74  NLSMSYCEVN---GVVRGQGFPHFKSLEHLNMERARIAPN--TSFLQIIGESTPSLKYLS 128
            L + YC ++                 + L +    I         Q + +S   L+ L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS-----LPWCVANMTSLRILDVSS 183
           L    +++++ R L   + S   L+EL   +N L         P  +   + LR L +  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 184 NQLT----GSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAE 239
             +T    G +    L    S++EL L+ N                  + D     L   
Sbjct: 266 CGITAKGCGDLCRV-LRAKESLKELSLAGNE-----------------LGDEGARLL--- 304

Query: 240 ITESYSLTTPNFQLQYLLLSS---GYGDGATFPKFLYHQHDLEYVDLSHTKMNGE----F 292
                +L  P  QL+ L + S        + F   L     L  + +S+ ++        
Sbjct: 305 ---CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 293 PNWLLENNTKLKTLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI 348
              L +  + L+ L+L +  +           + ++  LR+LD+SNN         +GD 
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC--------LGD- 412

Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
                     +  L  S+        LL+ L L +   + E           L  L    
Sbjct: 413 --------AGILQLVESVRQ---PGCLLEQLVLYDIYWSEE-------MEDRLQALEKDK 454

Query: 409 NSLEGKVLS 417
            SL  +V+S
Sbjct: 455 PSL--RVIS 461

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.5 bits (217), Expect = 8e-19
 Identities = 53/326 (16%), Positives = 100/326 (30%), Gaps = 84/326 (25%)

Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEP-LFNH-SRLKIFDA 231
            +++ LD+S+N++T  I++S L    +++ L L+ N      ++E   F+    L+  D 
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDL 107

Query: 232 ENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGE 291
             N                  L  L                                   
Sbjct: 108 SYN-----------------YLSNL----------------------------------- 115

Query: 292 FPNWLLENNTKLKTLFLVNDSL-----AGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIG 346
             +   +  + L  L L+ +          F        +L+ L V N +    I  +  
Sbjct: 116 -SSSWFKPLSSLTFLNLLGNPYKTLGETSLFS----HLTKLQILRVGNMDTFTKIQRKDF 170

Query: 347 DILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLAL 406
             L  L    I  + L    P S  +I  +  L L   Q    + E        ++ L L
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229

Query: 407 SNNSLEGKVLSLLSG--------------LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 452
            +  L+    S LS               + ++   L   +   +  ++ +  L  S N 
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 453 LTGLIPSTFSNLKHIESLDLSYNKLN 478
           L  +    F  L  ++ + L  N  +
Sbjct: 289 LKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 15/184 (8%)

Query: 322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSS-FGNINLLKILD 380
                L+ L +++N     I  +    L +L   ++S N L  ++ SS F  ++ L  L+
Sbjct: 73  QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130

Query: 381 LSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV-------LSLLSGLDLSCNKLIGHI 433
           L  N         L      L  L + N     K+       L+ L  L++  +  +   
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSY 189

Query: 434 PPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 492
            P+   ++  +  L L       L+         +E L+L    L+        EL T E
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT---FHFSELSTGE 246

Query: 493 VFSL 496
             SL
Sbjct: 247 TNSL 250

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 30/222 (13%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           SL SL  L L +N  +  +++        ++L +  L G+        S+ S    L+ L
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSW---FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA---------------------PNTSFL 114
            +   +    ++ + F     LE L ++ + +                       +   L
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 115 QIIGESTPSLKYLSLSDFTLSTNSSRILDRG----LCSLMHLQELYKVNNDLRGSLPWCV 170
           +I  + T S++ L L D  L T     L  G    L      + +   +  L   +   +
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR 212
             ++ L  L+ S NQL  S+       LTS++++ L  N + 
Sbjct: 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 48/298 (16%), Positives = 102/298 (34%), Gaps = 48/298 (16%)

Query: 18  PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSM 77
            ++ +L L +N  T     +  +L    NL+   L+ +   I+ ++     F SL +   
Sbjct: 52  EAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSN--GINTIE--EDSFSSLGS--- 101

Query: 78  SYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTLS 135
                              LEHL++    ++   ++ F     +   SL +L+L      
Sbjct: 102 -------------------LEHLDLSYNYLSNLSSSWF-----KPLSSLTFLNLLGNPYK 137

Query: 136 TNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPL 195
           T     L   L  L  L+      +          A +T L  L++ ++ L  S     L
Sbjct: 138 TLGETSLFSHLTKLQILRVGN--MDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSL 194

Query: 196 AHLTSIEELHLSDNHFRIPISLEP-LFNH-SRLKIFDAENNELNA-EITESYSLTTPNFQ 252
             + ++  L L          L     +  S ++  +  + +L+    +E  +  T +  
Sbjct: 195 KSIQNVSHLILHMKQHI---LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 253 --LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFL 308
               +  +           K L     L  ++ S  ++    P+ + +  T L+ ++L
Sbjct: 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 63/310 (20%), Positives = 106/310 (34%), Gaps = 46/310 (14%)

Query: 62  LQSI-ASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIG 118
           L SI + L  ++K+L +S   +  +          +L+ L +    I      SF     
Sbjct: 43  LNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSF----- 96

Query: 119 ESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLR 177
            S  SL++L LS   LS  SS         L  L  L  + N  +      + +++T L+
Sbjct: 97  SSLGSLEHLDLSYNYLSNLSSSWFK----PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 178 ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEP-LFNH-SRLKIFDAENNE 235
           IL V +      I     A LT +EEL +  +  +   S EP        +        +
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---SYEPKSLKSIQNVSHLILHMKQ 209

Query: 236 LNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW 295
                                 L   + D  +  + L    +L   DL     + E    
Sbjct: 210 HIL-------------------LLEIFVDVTSSVECL----ELRDTDLDTFHFS-ELSTG 245

Query: 296 LLENNTKLKTLFLVNDSLAGPFRLPIHSHK--RLRQLDVSNNNFQGHIPLEIGDILPNLI 353
              +  K  T   V  +    F++    ++   L +L+ S N  +  +P  I D L +L 
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQ 304

Query: 354 SFNISMNALD 363
              +  N  D
Sbjct: 305 KIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 38/238 (15%), Positives = 74/238 (31%), Gaps = 35/238 (14%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSI-ASLF---PS 71
              +L  L L  N        +   L +  +L         L  + L ++ +S F    S
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFSSLGSLEHL--------DLSYNYLSNLSSSWFKPLSS 125

Query: 72  LKNLSMSYCEVNGVVRGQGFPHFKSLEHL---NMERARIAPNTSFLQIIGESTPSLKYLS 128
           L  L++       +     F H   L+ L   NM+         F          L+ L 
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-----AGLTFLEELE 180

Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTG 188
           +      ++      + L S+ ++  L          L   V   +S+  L++    L  
Sbjct: 181 IDA----SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 189 -------SIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNH-SRLKIFDAENNELNA 238
                  +  ++ L    +   + ++D        +  L N  S L   +   N+L +
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLF---QVMKLLNQISGLLELEFSRNQLKS 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 8e-18
 Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 17/188 (9%)

Query: 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGNINLLKILDLSN 383
             L  L +  N+ +  I +   + L +L +  +  N L   IPS +F  ++ L+ L L N
Sbjct: 99  HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRN 156

Query: 384 NQLTGEIPEHLAVGCVYLDFLALSNN---------SLEGKVLSLLSGLDLSCNKLIGHIP 434
           N +   IP +       L  L L            + EG  L  L  L+L    +     
Sbjct: 157 NPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG--LFNLKYLNLGMCNI--KDM 211

Query: 435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF 494
           P +  L  ++ L +S N+   + P +F  L  ++ L +  ++++    +    L +L   
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 495 SLAFNNLS 502
           +LA NNLS
Sbjct: 272 NLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 8e-17
 Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 24/211 (11%)

Query: 278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSL----AGPFR-LPIHSHKRLRQLDV 332
           LE + L    +  +           L TL L ++ L    +G F  L      +LR+L +
Sbjct: 101 LEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS-----KLRELWL 154

Query: 333 SNNNFQGHIPLEIGDILPNLISFNIS-MNALDGSIPSSFGNINLLKILDLSNNQLTGEIP 391
            NN  +  IP    + +P+L+  ++  +  L+     +F  +  LK L+L    +  ++P
Sbjct: 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP 212

Query: 392 EHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQ-IGNLTRIQ 444
                  V L+ L +S N            LS L  L +  ++ +  I       L  + 
Sbjct: 213 NL--TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLV 269

Query: 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
            LNL+HNNL+ L    F+ L+++  L L +N
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.7 bits (163), Expect = 8e-12
 Identities = 53/246 (21%), Positives = 95/246 (38%), Gaps = 21/246 (8%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRG-LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILD 180
            + +YL+L +     N+ +++       L HL+ L    N +R         + SL  L+
Sbjct: 75  SNTRYLNLME-----NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFD-AENNELNAE 239
           +  N LT  I S    +L+ + EL L +N     I          L   D  E  +L   
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKL-EY 186

Query: 240 ITES--YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLL 297
           I+E     L      L+YL L     +    P        LE +++S      E      
Sbjct: 187 ISEGAFEGLF----NLKYLNLG--MCNIKDMPNLT-PLVGLEELEMSGNHFP-EIRPGSF 238

Query: 298 ENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI 357
              + LK L+++N  ++   R        L +L++++NN    +P ++   L  L+  ++
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297

Query: 358 SMNALD 363
             N  +
Sbjct: 298 HHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 23/223 (10%)

Query: 18  PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA-SLFPSLKNLS 76
            +   L L  NN             +  +LE   L  +   I  ++  A +   SL  L 
Sbjct: 75  SNTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGRN--SIRQIEVGAFNGLASLNTLE 129

Query: 77  MSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTL 134
           +    +  +  G  F +   L  L +    I   P+ +F        PSL  L L +   
Sbjct: 130 LFDNWLTVIPSG-AFEYLSKLRELWLRNNPIESIPSYAF-----NRVPSLMRLDLGEL-- 181

Query: 135 STNSSRILDRG-LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASS 193
                  +  G    L +L+ L     +++  +P  +  +  L  L++S N     I   
Sbjct: 182 --KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPG 236

Query: 194 PLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL 236
               L+S+++L + ++   + I        + L   +  +N L
Sbjct: 237 SFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 44/195 (22%), Positives = 73/195 (37%), Gaps = 18/195 (9%)

Query: 17  LPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA-SLFPSLKNL 75
           L SLNTL L  N  T   +         + L    L  +   I  + S A +  PSL  L
Sbjct: 122 LASLNTLELFDNWLTVIPSGA---FEYLSKLRELWLRNN--PIESIPSYAFNRVPSLMRL 176

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
            +   +    +    F    +L++LN+    I    +           L+ L +S     
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL-----TPLVGLEELEMSG---- 227

Query: 136 TNSSRILDRG-LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSP 194
            N    +  G    L  L++L+ +N+ +          + SL  L+++ N L+ S+    
Sbjct: 228 -NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDL 285

Query: 195 LAHLTSIEELHLSDN 209
              L  + ELHL  N
Sbjct: 286 FTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 22/188 (11%)

Query: 278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSL----AGPFR-LPIHSHKRLRQLDV 332
           L  ++L    +    P+   E  +KL+ L+L N+ +    +  F  +P      L +LD+
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-----SLMRLDL 178

Query: 333 SNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE 392
                  +I     + L NL   N+ M  +   +P+    +  L+ L++S N    EI  
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRP 235

Query: 393 HLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQT 445
               G   L  L + N+ +          L+ L  L+L+ N L   +P  +   L  +  
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVE 294

Query: 446 LNLSHNNL 453
           L+L HN  
Sbjct: 295 LHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 43/223 (19%), Positives = 79/223 (35%), Gaps = 28/223 (12%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSG---SSLHISLLQSIASLFPSL 72
            L  L  L L  N+            +   +L    L     + +     +        L
Sbjct: 97  HLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY----LSKL 149

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERA-RIA--PNTSFLQIIGESTPSLKYLSL 129
           + L +    +   +    F    SL  L++    ++      +F     E   +LKYL+L
Sbjct: 150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-----EGLFNLKYLNL 203

Query: 130 SDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGS 189
                   + + +   L  L+ L+EL    N      P     ++SL+ L V ++Q++  
Sbjct: 204 GM-----CNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-L 256

Query: 190 IASSPLAHLTSIEELHLSDNHFR-IPIS-LEPLFNHSRLKIFD 230
           I  +    L S+ EL+L+ N+   +P     PL     L +  
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 47/285 (16%), Positives = 97/285 (34%), Gaps = 55/285 (19%)

Query: 62  LQSI-ASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIG 118
           L  +   +  + + L++    +  +     F H   LE L + R  I      +F     
Sbjct: 66  LSEVPQGIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAF----- 119

Query: 119 ESTPSLKYLSLSDFTLSTNSSRILDRG-LCSLMHLQELYKVNNDLRGSLPWCVANMTSLR 177
               SL  L L D     N   ++  G    L  L+EL+  NN +     +    + SL 
Sbjct: 120 NGLASLNTLELFD-----NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 178 ILDVSS-NQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL 236
            LD+    +L   I+      L +++ L+L   + +    +  L     L+  +   N  
Sbjct: 175 RLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHF 230

Query: 237 NAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL 296
                                +  G     +F    +    L+ + + +++++       
Sbjct: 231 PE-------------------IRPG-----SF----HGLSSLKKLWVMNSQVS-LIERNA 261

Query: 297 LENNTKLKTLFLVNDSLAGPFRLP---IHSHKRLRQLDVSNNNFQ 338
            +    L  L L +++L+    LP       + L +L + +N + 
Sbjct: 262 FDGLASLVELNLAHNNLS---SLPHDLFTPLRYLVELHLHHNPWN 303

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 15/161 (9%)

Query: 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
             L  + ++N N      +E      N+    I+      +  +    ++ L+ L +   
Sbjct: 44  NSLTYITLANINVTDLTGIEY---AHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGK 98

Query: 385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSG------LDLSCNKLIGHIPPQIG 438
            +T +   +L+ G   L  L +S+++ +  +L+ ++       +DLS N  I  I P + 
Sbjct: 99  DVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479
            L  +++LN+  + +         +   +  L      + G
Sbjct: 157 TLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.5 bits (176), Expect = 1e-14
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 11/158 (6%)

Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
               ++  +  ++       +   +N L  + L+N  +T ++   +      +  L ++N
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIE-YAHNIKDLTINN 75

Query: 409 NSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL 464
                      LS L  L +    +     P +  LT +  L++SH+     I +  + L
Sbjct: 76  IHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 465 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
             + S+DLSYN     I   L  L  L+  ++ F+ + 
Sbjct: 136 PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
             ++ L ++N +   + P+     L NL    I    +      +   +  L +LD+S++
Sbjct: 66  HNIKDLTINNIHATNYNPISG---LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL-----LSGLDLSCNKLIGHIPPQIGN 439
                I   +      ++ + LS N     ++ L     L  L++  +  +      I +
Sbjct: 123 AHDDSILTKIN-TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRG-IED 179

Query: 440 LTRIQTLNLSHNNLTGL 456
             ++  L      + G 
Sbjct: 180 FPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
           ++ L+ + L+    +  +   I     I+ L +++ + T    +  S L ++E L +   
Sbjct: 43  MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK 98

Query: 476 KLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
            +       L  L +L +  ++ +     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 73/224 (32%)

Query: 171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFD 230
           A M SL  + +++  +T  +  + + +  +I++L +++ H     +  P+   S L+   
Sbjct: 41  AQMNSLTYITLANINVT-DL--TGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG 290
               ++ ++   +                                               
Sbjct: 95  IMGKDVTSDKIPN----------------------------------------------- 107

Query: 291 EFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI-- 348
                 L   T L  L + + +        I++  ++  +D+S N         I DI  
Sbjct: 108 ------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-------AITDIMP 154

Query: 349 ---LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE 389
              LP L S NI  + +         +   L  L   +  + G+
Sbjct: 155 LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 16/146 (10%)

Query: 93  HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL 152
              SL ++ +    +  + + +    E   ++K L++++   +  +       +  L +L
Sbjct: 42  QMNSLTYITLANINVT-DLTGI----EYAHNIKDLTINNIHATNYN------PISGLSNL 90

Query: 153 QELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR 212
           + L  +  D+       ++ +TSL +LD+S +    SI  + +  L  +  + LS N   
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGA- 148

Query: 213 IPIS-LEPLFNHSRLKIFDAENNELN 237
             I+ + PL     LK  + + + ++
Sbjct: 149 --ITDIMPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 19/176 (10%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
           +   + SL  + L + N T         +    N++   L+ +++H +    I+ L  +L
Sbjct: 39  TEAQMNSLTYITLANINVT-----DLTGIEYAHNIKD--LTINNIHATNYNPISGL-SNL 90

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF 132
           + L +   +V    +        SL  L++  +    ++   +I   + P +  + LS  
Sbjct: 91  ERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHD-DSILTKI--NTLPKVNSIDLSYN 146

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTG 188
              T+        L +L  L+ L    + +       + +   L  L   S  + G
Sbjct: 147 GAITDIM-----PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 26/200 (13%)

Query: 301 TKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMN 360
                L L  + L       +  + RL QL++          L++   LP L + ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87

Query: 361 ALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLS 420
            L  S+P     +  L +LD+S N+LT  +P     G   L  L L  N L+        
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-------- 137

Query: 421 GLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479
                       +PP +     +++ L+L++NNLT L     + L+++++L L  N L  
Sbjct: 138 -----------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 480 KIPHQLVELKTLEVFSLAFN 499
            IP        L    L  N
Sbjct: 187 -IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 42/140 (30%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLE----GKVLSLLSGLDLSCNKLIG 431
             IL LS N L         +    L  L L    L        L +L  LDLS N+L  
Sbjct: 33  TTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL-Q 90

Query: 432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH----QLVE 487
            +P     L  +  L++S N LT L       L  ++ L L  N+L   +P        +
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 149

Query: 488 LKTLEVFSLAFNNLSGEIPE 507
           L+ L   SLA NNL+ E+P 
Sbjct: 150 LEKL---SLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 46/224 (20%), Positives = 81/224 (36%), Gaps = 33/224 (14%)

Query: 17  LPSLNTLYLKHNNFTGTAT---TTTQELHNFTNLEYSTLSGSSLHISLLQSI-ASLFPSL 72
           + S   +     N T         T  LH              L  +LL +   +     
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKDTTILH--------------LSENLLYTFSLATLMPY 54

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF 132
             L+    +   + + Q       L  L++   ++      L ++G++ P+L  L +S  
Sbjct: 55  TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL----QSLPLLGQTLPALTVLDVSFN 110

Query: 133 TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDVSSNQLTGSIA 191
            L++     L      L  LQELY   N+L+ +LP  +      L  L +++N LT  + 
Sbjct: 111 RLTSLPLGALRG----LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELP 164

Query: 192 SSPLAHLTSIEELHLSDNHFR-IPISLEPLFNHSRLKIFDAENN 234
           +  L  L +++ L L +N    IP   +  F    L       N
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 37/208 (17%), Positives = 64/208 (30%), Gaps = 27/208 (12%)

Query: 8   SKLLQSM--GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSI 65
            + L ++          L+L  N     +  T   L  +T L    L  + L      + 
Sbjct: 19  KRNLTALPPDLPKDTTILHLSENLLYTFSLAT---LMPYTRLTQLNLDRAEL------TK 69

Query: 66  ASLFPSLKNLSMSYCEVNGVVRGQG-FPHFKSLEHLNMERARIA--PNTSFLQIIGESTP 122
             +  +L  L       N +           +L  L++   R+   P  +          
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-----RGLG 124

Query: 123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDV 181
            L+ L L    L T    +L         L++L   NN+L   LP  +   + +L  L +
Sbjct: 125 ELQELYLKGNELKTLPPGLLTP----TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179

Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDN 209
             N L  +I          +    L  N
Sbjct: 180 QENSLY-TIPKGFFG-SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 16/147 (10%)

Query: 94  FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQ 153
            K    L++    +    +F          L  L+L    L+            +L  L 
Sbjct: 30  PKDTTILHLSENLL---YTFSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLG 80

Query: 154 ELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI 213
            L   +N L+ SLP     + +L +LDVS N+LT S+    L  L  ++EL+L  N  + 
Sbjct: 81  TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK- 137

Query: 214 PISLEP-LFNH-SRLKIFDAENNELNA 238
             +L P L     +L+     NN L  
Sbjct: 138 --TLPPGLLTPTPKLEKLSLANNNLTE 162

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 51/235 (21%), Positives = 75/235 (31%), Gaps = 64/235 (27%)

Query: 152 LQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
              L+   N L       +   T L  L++   +LT          L  +  L LS N  
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHNQL 89

Query: 212 RIPISLEPLFNH-SRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPK 270
           +   SL  L      L + D   N L +                   L  G   G    +
Sbjct: 90  Q---SLPLLGQTLPALTVLDVSFNRLTS-------------------LPLGALRGLGELQ 127

Query: 271 FLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPF-RLPIHSHKRLRQ 329
            LY                       L+ N +LKTL        G     P     +L +
Sbjct: 128 ELY-----------------------LKGN-ELKTL------PPGLLTPTP-----KLEK 152

Query: 330 LDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
           L ++NNN    +P  + + L NL +  +  N+L  +IP  F   +LL    L  N
Sbjct: 153 LSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 79.8 bits (196), Expect = 7e-16
 Identities = 51/307 (16%), Positives = 97/307 (31%), Gaps = 33/307 (10%)

Query: 198 LTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLL 257
           + ++  +           + +     S + + D     LN ++ +               
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330

Query: 258 LSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPF 317
                     + +       L   +LS  K         LE+  +L+ L   N       
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTI 388

Query: 318 RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLK 377
            L + +   L     +   F     L+  D +      ++    L  +          ++
Sbjct: 389 ILLMRALDPLLYEKETLQYFST---LKAVDPMRAAYLDDLRSKFLLENSVLKM-EYADVR 444

Query: 378 ILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-KVLSLLSGLDLSCNKLIGHIPPQ 436
           +L L++  LT                       L   + L L++ LDLS N+L   +PP 
Sbjct: 445 VLHLAHKDLT----------------------VLCHLEQLLLVTHLDLSHNRLR-ALPPA 481

Query: 437 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG-KIPHQLVELKTLEVFS 495
           +  L  ++ L  S N L  +     +NL  ++ L L  N+L        LV    L + +
Sbjct: 482 LAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539

Query: 496 LAFNNLS 502
           L  N+L 
Sbjct: 540 LQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 9e-11
 Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 5/148 (3%)

Query: 89  QGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCS 148
           +   +F +L+ ++  RA    +     ++  S   ++Y  +    L+     +L   L  
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQ 461

Query: 149 LMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSD 208
           L+ +  L   +N LR +LP  +A +  L +L  S N L  ++    +A+L  ++EL L +
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV--DGVANLPRLQELLLCN 517

Query: 209 NHFRIPISLEPLFNHSRLKIFDAENNEL 236
           N  +   +++PL +  RL + + + N L
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 12/221 (5%)

Query: 1   NVKIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSL-HI 59
               RD +   Q      S+    +  +           E  N   L    L   +L  +
Sbjct: 339 ECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 398

Query: 60  SLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGE 119
              +     F +LK +          +R +       L+    +   +  + +   +   
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL--HLAHKDL--T 454

Query: 120 STPSLKYLS-LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRI 178
               L+ L  ++   LS N  R L   L +L  L+ L   +N L  ++   VAN+  L+ 
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQE 512

Query: 179 LDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEP 219
           L + +N+L  S A  PL     +  L+L  N     +  E 
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN----SLCQEE 549

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.9 bits (190), Expect = 8e-16
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 25/215 (11%)

Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSL----AGPFRLPIHSHKRLRQLDV 332
             + +DLS   +     ++   +  +L+ L L    +     G +     S   L  L +
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLIL 83

Query: 333 SNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGNINLLKILDLSNNQLTGEIP 391
           + N  Q  + L     L +L         L  S+ +   G++  LK L++++N +     
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFK 140

Query: 392 EHLA-VGCVYLDFLALSNN---SLEGKVLSLLS-------GLDLSCNKLIGHIPPQIGNL 440
                     L+ L LS+N   S+    L +L         LDLS N  +  I P     
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKE 199

Query: 441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
            R++ L L  N L  +    F  L  ++ + L  N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 24/149 (16%)

Query: 366 IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLL 419
           +P S       K LDLS N L   +  +       L  L LS     ++E      LS L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 420 SGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
           S L L+ N +   +       L+ +Q L     NL  L      +LK ++ L++++N + 
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 479 GKIP-----HQLVELKTLEVFSLAFNNLS 502
                      L  L+ L    L+ N + 
Sbjct: 138 -SFKLPEYFSNLTNLEHL---DLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 11/191 (5%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILD 180
           P L+ L LS   + T            L HL  L    N ++ SL     + ++SL+ L 
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQS----LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNH-SRLKIFDAENNELNAE 239
                L  S+ + P+ HL +++EL+++ N  +    L   F++ + L+  D  +N++ + 
Sbjct: 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQS- 163

Query: 240 ITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLEN 299
           I  +         L  L L              + +  L+ + L   ++    P+ + + 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDR 222

Query: 300 NTKLKTLFLVN 310
            T L+ ++L  
Sbjct: 223 LTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 42/201 (20%), Positives = 72/201 (35%), Gaps = 23/201 (11%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIAS-LF---PS 71
           S P L  L L             Q L + + L         L  + +QS+A   F    S
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL--------ILTGNPIQSLALGAFSGLSS 101

Query: 72  LKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIG--ESTPSLKYLSL 129
           L+ L      +  +       H K+L+ LN+    I       ++     +  +L++L L
Sbjct: 102 LQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLI----QSFKLPEYFSNLTNLEHLDL 156

Query: 130 SDFTLSTNSSRILDRGLCSLMHLQ-ELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTG 188
           S   + +     L   L  +  L   L    N +   +         L+ L + +NQL  
Sbjct: 157 SSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK- 213

Query: 189 SIASSPLAHLTSIEELHLSDN 209
           S+       LTS++++ L  N
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 48/250 (19%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILD 180
            S K L LS   L    S        S   LQ L     +++ ++      +++ L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEP-LFNH-SRLKIFDAENNELNA 238
           ++ N +  S+A    + L+S+++L   + +     SLE     H   LK  +  +N + +
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQS 138

Query: 239 EITESY--SLTTPNFQLQYLLLSS---GYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFP 293
                Y  +LT     L++L LSS                  H +  ++LS         
Sbjct: 139 FKLPEYFSNLT----NLEHLDLSSNKIQSIYCTDLRVL----HQMPLLNLS--------- 181

Query: 294 NWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353
             L  +   +  +        G F+       RL++L +  N  +  +P  I D L +L 
Sbjct: 182 --LDLSLNPMNFI------QPGAFKEI-----RLKELALDTNQLK-SVPDGIFDRLTSLQ 227

Query: 354 SFNISMNALD 363
              +  N  D
Sbjct: 228 KIWLHTNPWD 237

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 15/166 (9%)

Query: 347 DILPNLISFNISMNALDGSIPS--SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFL 404
            +       ++S N L   + +  +   +  L  L LS+N L   I     V    L +L
Sbjct: 36  SLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYL 93

Query: 405 ALSNN---SLEGKV---LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLI 457
            LS+N   +L+  +   L  L  L L  N  I  +      ++ ++Q L LS N ++   
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 458 PSTFSN---LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN 500
                +   L  +  LDLS NKL       L +L       L  +N
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 17/150 (11%)

Query: 365 SIPSSFGNI-NLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LS 417
           ++P    ++ +   +LDLS+N L+    E        L  L LS+N    +  +    + 
Sbjct: 32  NVPQ---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 418 LLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476
            L  LDLS N L   +   +  +L  ++ L L +N++  +  + F ++  ++ L LS N+
Sbjct: 89  NLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 477 LNGKIPHQ----LVELKTLEVFSLAFNNLS 502
           ++ + P +      +L  L +  L+ N L 
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 3e-13
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 14/158 (8%)

Query: 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGNINLLKILDLSNNQ 385
              LD+S+NN            L NL S  +S N L+  I S +F  +  L+ LDLS+N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 386 LTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLIGHIPPQI-- 437
           L   + E L      L+ L L NN    ++      ++ L  L LS N++    P ++  
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIK 157

Query: 438 --GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 473
               L ++  L+LS N L  L  +    L       L 
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 18/158 (11%)

Query: 62  LQSI-ASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIG 118
           L ++  SL      L +S+  ++ +          +L  L +    +    + +F     
Sbjct: 30  LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF----- 84

Query: 119 ESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLR 177
              P+L+YL LS   L T    +       L  L+ L   NN +   +      +M  L+
Sbjct: 85  VPVPNLRYLDLSSNHLHTLDEFLFSD----LQALEVLLLYNNHIV-VVDRNAFEDMAQLQ 139

Query: 178 ILDVSSNQLTGSI---ASSPLAHLTSIEELHLSDNHFR 212
            L +S NQ++             L  +  L LS N  +
Sbjct: 140 KLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 134 LSTNSSRILDRG--LCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDVSSNQLTGSI 190
           LS N+   L        L +L  L   +N L   +       + +LR LD+SSN L  ++
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TL 103

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEP-LFNH-SRLKIFDAENNEL 236
                + L ++E L L +NH      ++   F   ++L+      N++
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQI 148

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 44/210 (20%), Positives = 77/210 (36%), Gaps = 20/210 (9%)

Query: 297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN 356
                    +     ++     +       +  L            +E    L NLI   
Sbjct: 15  DPALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLE 69

Query: 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG--- 413
           +  N +  +  +   N+  +  L+LS N L       +A G   +  L L++  +     
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELELSGNPLK--NVSAIA-GLQSIKTLDLTSTQITDVTP 124

Query: 414 -KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
              LS L  L L  N+ I +I P +  LT +Q L++ +  ++ L P   +NL  + +L  
Sbjct: 125 LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 473 SYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
             NK++  I   L  L  L    L  N +S
Sbjct: 181 DDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 51/309 (16%), Positives = 102/309 (33%), Gaps = 68/309 (22%)

Query: 193 SPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ 252
            P   L +  ++    ++           +   +    A    +   I            
Sbjct: 13  FPDPALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVT-TIEG---------- 58

Query: 253 LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS 312
           +QYL                   ++L  ++L   ++    P   L+N TK+  L L  + 
Sbjct: 59  VQYL-------------------NNLIGLELKDNQITDLAP---LKNLTKITELELSGNP 96

Query: 313 LAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGN 372
           L       I   + ++ LD+++       PL     L NL    + +N +  +  S    
Sbjct: 97  LKNVS--AIAGLQSIKTLDLTSTQITDVTPLAG---LSNLQVLYLDLNQI--TNISPLAG 149

Query: 373 INLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH 432
           +  L+ L + N Q++              D   L+N       LS L+ L    NK I  
Sbjct: 150 LTNLQYLSIGNAQVS--------------DLTPLAN-------LSKLTTLKADDNK-ISD 187

Query: 433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 492
           I P + +L  +  ++L +N ++ + P   +N  ++  + L+   +  +       L    
Sbjct: 188 ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

Query: 493 VFSLAFNNL 501
           V        
Sbjct: 245 VVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 47/314 (14%), Positives = 101/314 (32%), Gaps = 55/314 (17%)

Query: 171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFD 230
             + +   +    + +T +      A L  I  L           ++E +   + L   +
Sbjct: 16  PALANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG 290
            ++N++  ++    +LT                              +  ++LS   +  
Sbjct: 70  LKDNQIT-DLAPLKNLT-----------------------------KITELELSGNPLKN 99

Query: 291 EFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP 350
                 +     +KTL L +  +      P+     L+ L +  N      PL     L 
Sbjct: 100 VSA---IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISPLAG---LT 151

Query: 351 NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS 410
           NL   +I    +  S  +   N++ L  L   +N+++ +I          L  + L NN 
Sbjct: 152 NLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS-DISPL--ASLPNLIEVHLKNNQ 206

Query: 411 LEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH 466
           +         S L  + L+   +     P   N   +    +   +   + P+T S+   
Sbjct: 207 ISDVSPLANTSNLFIVTLTNQTITN--QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

Query: 467 IESLDLSYNKLNGK 480
             S +L++N  +  
Sbjct: 265 YASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 55/241 (22%), Positives = 92/241 (38%), Gaps = 31/241 (12%)

Query: 11  LQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFP 70
             +   L  + TL            TT + +    NL    L      I+ L  + +L  
Sbjct: 34  TVTQADLDGITTLSAFGTGV-----TTIEGVQYLNNLIG--LELKDNQITDLAPLKNL-T 85

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLS 130
            +  L +S   +  V         +S++ L++   +I   T           +L+ L L 
Sbjct: 86  KITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDVTPL-----AGLSNLQVLYLD 137

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
              ++  S       L  L +LQ L   N  +    P  +AN++ L  L    N+++  I
Sbjct: 138 LNQITNIS------PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DI 188

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL-NAEITESYSLTTP 249
             SPLA L ++ E+HL +N       + PL N S L I    N  + N  +  + +L  P
Sbjct: 189 --SPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

Query: 250 N 250
           N
Sbjct: 244 N 244

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 31/231 (13%)

Query: 11  LQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFP 70
           ++ +  L +L  L LK N       T    L N T +    LSG+   +  + +IA L  
Sbjct: 56  IEGVQYLNNLIGLELKDNQI-----TDLAPLKNLTKITELELSGN--PLKNVSAIAGL-Q 107

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLS 130
           S+K L ++  ++  V          +L+ L ++  +I  N S L        +L+YLS+ 
Sbjct: 108 SIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQIT-NISPL----AGLTNLQYLSIG 159

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
           +          L   L +L  L  L   +N +    P  +A++ +L  + + +NQ++   
Sbjct: 160 N-----AQVSDLT-PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-- 209

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEIT 241
             SPLA+ +++  + L++      I+ +P+F ++ L + +       A I 
Sbjct: 210 -VSPLANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 52/293 (17%), Positives = 107/293 (36%), Gaps = 46/293 (15%)

Query: 92  PHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMH 151
           P   +   +   ++ +    +   +       +  LS     ++T        G+  L +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADL-----DGITTLSAFGTGVTTIE------GVQYLNN 64

Query: 152 LQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
           L  L   +N +    P  + N+T +  L++S N L  ++  S +A L SI+ L L+    
Sbjct: 65  LIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NV--SAIAGLQSIKTLDLTSTQI 119

Query: 212 RIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKF 271
                + PL   S L++   + N++   I+    LT     LQYL + +      +    
Sbjct: 120 T---DVTPLAGLSNLQVLYLDLNQIT-NISPLAGLT----NLQYLSIGN---AQVSDLTP 168

Query: 272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLD 331
           L +   L  +     K++   P   L +   L  + L N+ ++     P+ +   L  + 
Sbjct: 169 LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVT 223

Query: 332 VSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
           ++N      I  +      NL+  N+              +   +    +S+N
Sbjct: 224 LTNQT----ITNQPVFYNNNLVVPNVVKG----------PSGAPIAPATISDN 262

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 57/302 (18%), Positives = 118/302 (39%), Gaps = 42/302 (13%)

Query: 64  SIASLFP--SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
           +I  +FP  +L N        + V           +  L+     +    + ++ + +  
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV----TTIEGV-QYL 62

Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
            +L  L L D  ++  +       L +L  + EL    N L+      +A + S++ LD+
Sbjct: 63  NNLIGLELKDNQITDLA------PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDL 114

Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEIT 241
           +S Q+T     +PLA L++++ L+L  N      ++ PL   + L+     N +++ ++T
Sbjct: 115 TSTQITD---VTPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVS-DLT 167

Query: 242 ESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNT 301
              +L+    +L  L       +  +    L    +L  V L + +++   P   L N +
Sbjct: 168 PLANLS----KLTTLKAD---DNKISDISPLASLPNLIEVHLKNNQISDVSP---LANTS 217

Query: 302 KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA 361
            L  + L N ++      P+  +  L   +V               I P  IS N +  +
Sbjct: 218 NLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPS-------GAPIAPATISDNGTYAS 267

Query: 362 LD 363
            +
Sbjct: 268 PN 269

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 75.0 bits (184), Expect = 3e-14
 Identities = 66/485 (13%), Positives = 130/485 (26%), Gaps = 74/485 (15%)

Query: 41  LHNFTNLEYSTLSGSS--------------LHISLLQSIASLFPSLKNLSMSYCEV-NGV 85
              F NL    L G                     +  I++    LK++      V +  
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 86  VRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRG 145
           +          LE L +++         L  I      +K L + + + S    + L   
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDG-LLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 146 LCSLMHLQELYKVNNDLRG----SLPWCVANMTSLRILDVSS-NQLTGSIASSPLAHLTS 200
                 L+ L     +        L     N  SL  + V     L         A+L  
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEE 247

Query: 201 IEELHLSDNHFRIP--ISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLL 258
                L+++       ++L       RL +     NE+         L     Q++ L L
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-------LFPFAAQIRKLDL 300

Query: 259 SSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFL---VNDSLAG 315
                +       +    +LE ++  +   +      L +   +LK L +    ++    
Sbjct: 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL-EVLAQYCKQLKRLRIERGADEQGME 359

Query: 316 PFRLPIHSH---------KRLRQLDVSNNNFQGHIPLEIGDILPNLISF---------NI 357
                +            + L  + V  ++        IG  L NL  F          I
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 358 SMNALDGSIPSSFGNINLLKILDLSNN--QLTGEIPEHLAVGCVYLDFLALSNNSLEGKV 415
           +   LD  + S       L+          LT     ++      + ++ L       + 
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479

Query: 416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT--GLIPSTFSNLKHIESLDLS 473
           L   S                      +Q L +     +   +  +  + L  +  L + 
Sbjct: 480 LMEFS-----------------RGCPNLQKLEMRGCCFSERAIA-AAVTKLPSLRYLWVQ 521

Query: 474 YNKLN 478
             + +
Sbjct: 522 GYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 34/318 (10%), Positives = 85/318 (26%), Gaps = 42/318 (13%)

Query: 6   DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSI 65
           +     ++  +L       L  +                  L  S +  + +       +
Sbjct: 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-----PIL 288

Query: 66  ASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLK 125
                 ++ L + Y  +             +LE L             L+++ +    LK
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI---GDRGLEVLAQYCKQLK 345

Query: 126 YLSLS----DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
            L +     +  +      +  RGL +L                          L  + V
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIAL--------------------AQGCQELEYMAV 385

Query: 182 SSNQLT----GSIASSPLAHLTSIEELHLSDNHFRIPISLEPLF-----NHSRLKIFDAE 232
             + +T     SI +  L +L     + L        + L+           +L+ F   
Sbjct: 386 YVSDITNESLESIGTY-LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

Query: 233 NNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEF 292
             +          +   +  ++++LL           +F     +L+ +++     +   
Sbjct: 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504

Query: 293 PNWLLENNTKLKTLFLVN 310
               +     L+ L++  
Sbjct: 505 IAAAVTKLPSLRYLWVQG 522

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.8 bits (183), Expect = 3e-14
 Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 30/241 (12%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           +        LK  + T   T      +   +++   +  ++  I  +Q I  L P++  L
Sbjct: 19  AFAETIKDNLKKKSVTDAVT-----QNELNSIDQ--IIANNSDIKSVQGIQYL-PNVTKL 70

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
            ++    N +   +   + K+L  L ++  +I  + S L    +    LK LSL    +S
Sbjct: 71  FLNG---NKLTDIKPLTNLKNLGWLFLDENKIK-DLSSL----KDLKKLKSLSLEHNGIS 122

Query: 136 TNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPL 195
             +      GL  L  L+ LY  NN +       ++ +T L  L +  NQ++  I   PL
Sbjct: 123 DIN------GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DI--VPL 171

Query: 196 AHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY 255
           A LT ++ L+LS NH      L  L     L + +  + E   +     S       ++ 
Sbjct: 172 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 256 L 256
            
Sbjct: 229 T 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 7e-14
 Identities = 53/376 (14%), Positives = 127/376 (33%), Gaps = 36/376 (9%)

Query: 152 LQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
           + E   V+  ++   P            ++    +T    +     L SI+++  +++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDI 55

Query: 212 RIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKF 271
           +   S++ +     +       N+L  +I    +L      L +L L     +       
Sbjct: 56  K---SVQGIQYLPNVTKLFLNGNKLT-DIKPLTNLK----NLGWLFLDE---NKIKDLSS 104

Query: 272 LYHQHDLEYVDLSH---TKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLR 328
           L     L+ + L H   + +NG      L +  +L++L+L N+ +       +    +L 
Sbjct: 105 LKDLKKLKSLSLEHNGISDING------LVHLPQLESLYLGNNKITDI--TVLSRLTKLD 156

Query: 329 QLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTG 388
            L + +N     +PL     L  L +  +S N +  S   +   +  L +L+L + +   
Sbjct: 157 TLSLEDNQISDIVPLA---GLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLN 211

Query: 389 EIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 448
           +   H +   V  + +  ++ SL      +    D     +  H+P     ++ I    +
Sbjct: 212 KPINHQSN-LVVPNTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269

Query: 449 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508
           +               + ++ +      ++G +    VE  T                 W
Sbjct: 270 TIGKAKA--RFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGW 327

Query: 509 KAQFATFNESSYEGNT 524
             +    +E ++  + 
Sbjct: 328 YTEKNGGHEWNFNTDY 343

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 1e-11
 Identities = 52/316 (16%), Positives = 114/316 (36%), Gaps = 35/316 (11%)

Query: 65  IASLFP--SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTP 122
           I  +FP  +         +   V          S++ +    + I  +   +Q      P
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQ----YLP 65

Query: 123 SLKYLSLSDFTLSTNSSRILD-RGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
           ++  L L+        +++ D + L +L +L  L+   N ++  L   + ++  L+ L +
Sbjct: 66  NVTKLFLNG-------NKLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116

Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEIT 241
             N ++  I  + L HL  +E L+L +N       +  L   ++L     E+N+++ +I 
Sbjct: 117 EHNGIS-DI--NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQIS-DIV 169

Query: 242 ESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNT 301
               LT    +LQ L LS    +  +  + L    +L+ ++L   +   +  N    N  
Sbjct: 170 PLAGLT----KLQNLYLS---KNHISDLRALAGLKNLDVLELFSQECLNKPINH-QSNLV 221

Query: 302 KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLE---IGDILPNLISFNIS 358
              T+   + SL  P  +          +      F   +         I      F+  
Sbjct: 222 VPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGR 281

Query: 359 MNALDGSIPSSFGNIN 374
           +      + +   +++
Sbjct: 282 VTQPLKEVYTVSYDVD 297

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 32/242 (13%), Positives = 73/242 (30%), Gaps = 26/242 (10%)

Query: 11  LQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFP 70
           L S+  L  L +L L+HN       +    L +   LE   L   +  I+ +  ++ L  
Sbjct: 102 LSSLKDLKKLKSLSLEHNGI-----SDINGLVHLPQLES--LYLGNNKITDITVLSRL-T 153

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLS 130
            L  LS+   +++ +           L++L + +  I+ +   L        +L  L L 
Sbjct: 154 KLDTLSLEDNQISDI---VPLAGLTKLQNLYLSKNHIS-DLRAL----AGLKNLDVLELF 205

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
                             L+    +   +  L    P  +++       +V  +      
Sbjct: 206 SQECLNKPINHQSN----LVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE--- 256

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
             +        + + +     R    +           +D +   +  ++     +T P 
Sbjct: 257 -FTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPK 315

Query: 251 FQ 252
             
Sbjct: 316 PP 317

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 16/227 (7%)

Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFL-VNDSLAGPFRLPIHSHKRLRQLDVSNN 335
           +   +    TK+              L+ + +  ND L         +  +L ++ +   
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 336 NFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGNINLLKILDLSNNQLTGEIPEHL 394
           N   +I  E    LPNL    IS   +   +P     +     +LD+ +N     I  + 
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 395 AVGCVY-LDFLALSNN---SLEGKVLSLLS--GLDLSCNKLIGHIPPQI-GNLTRIQTLN 447
            VG  +    L L+ N    +     +      L+LS N  +  +P  +    +    L+
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 448 LSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP--HQLVELKTLE 492
           +S   +  L      NLK + +      K   K+P   +LV L    
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 25/214 (11%)

Query: 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSL-----AGPFRLPIHSHKRLRQL 330
            DLE +++S   +       +  N  KL  + +   +         F+    +   L+ L
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ----NLPNLQYL 109

Query: 331 DVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGNI-NLLKILDLSNNQLTG 388
            +SN   + H+P          +  +I  N    +I   SF  +     IL L+ N +  
Sbjct: 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167

Query: 389 EIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQI-GNLT 441
           EI      G    +     NN+LE          S    LD+S  + I  +P     NL 
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLK 226

Query: 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
           +++  +    NL  L       L  +    L+Y 
Sbjct: 227 KLRARST--YNLKKLPT--LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 34/186 (18%), Positives = 55/186 (29%), Gaps = 32/186 (17%)

Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLT 387
           R      +     IP    D+  N I     +  L      +F     L+ +++S N + 
Sbjct: 12  RVFLCQESKVT-EIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 388 GEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTL 446
             I                SN       L  L  + +     + +I P+   NL  +Q L
Sbjct: 68  EVIEAD-----------VFSN-------LPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 447 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL-----VELKTLEVFSLAFNNL 501
            +S+  +  L      +      LD+  N     I          E   L    L  N +
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL---WLNKNGI 166

Query: 502 SGEIPE 507
             EI  
Sbjct: 167 Q-EIHN 171

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 33/239 (13%), Positives = 65/239 (27%), Gaps = 34/239 (14%)

Query: 18  PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSM 77
            +   L                    F +LE   +S + +   +   + S  P L  + +
Sbjct: 30  RNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 78  SYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSD------ 131
                   +  + F +  +L++L +    I        +    +     L + D      
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNINIHT 143

Query: 132 ---------------FTLSTNSSRILDRGLCSLMHLQELY-KVNNDLRGSLPWCVANMTS 175
                            L+ N  + +     +   L EL    NN+L           + 
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203

Query: 176 LRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENN 234
             ILD+S  ++  S+ S  L +L  +      +        L  L     L        
Sbjct: 204 PVILDISRTRIH-SLPSYGLENLKKLRARSTYNL-----KKLPTLEKLVALMEASLTYP 256

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSS-FGNINLLKILDLSNNQ 385
            ++LD+ +N     +P +    L  L    ++ N L  ++P+  F  +  L+ L +++N+
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 386 LTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLIGHIPPQI-G 438
           L   +P  +    V L  L L  N   SL  +V   L+ L+ L L  N+L   +P  +  
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFD 154

Query: 439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAF 498
            LT ++ L L +N L  +    F  L  +++L L  N+L          L+ L++  L  
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 499 N 499
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 23/148 (15%)

Query: 366 IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLL 419
           IP+        K LDL +N+L+  +P         L  L L++N   +L   +   L  L
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 420 SGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
             L ++ NKL   +P  +   L  +  L L  N L  L P  F +L  +  L L YN+L 
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 479 GKIPH----QLVELKTLEVFSLAFNNLS 502
             +P     +L  LK L    L  N L 
Sbjct: 147 -SLPKGVFDKLTSLKEL---RLYNNQLK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 11/163 (6%)

Query: 348 ILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALS 407
           I  +    ++  N L      +F  +  L++L L++N+L   +P  +      L+ L ++
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 408 NNSLEG------KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPST 460
           +N L+         L  L+ L L  N+ +  +PP++  +LT++  L+L +N L  L    
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152

Query: 461 FSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAFNNLS 502
           F  L  ++ L L  N+L  ++P    + L  L+   L  N L 
Sbjct: 153 FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 35/202 (17%)

Query: 19  SLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSI-ASLFPSLKNLSM 77
               L L+ N  +   +      H  T L    L+ + L     Q++ A +F  LKNL  
Sbjct: 38  DTKKLDLQSNKLSSLPSKA---FHRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLET 89

Query: 78  SYCEVN-------GVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLS 128
            +   N       GV     F    +L  L ++R ++   P   F     +S   L YLS
Sbjct: 90  LWVTDNKLQALPIGV-----FDQLVNLAELRLDRNQLKSLPPRVF-----DSLTKLTYLS 139

Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDVSSNQLT 187
           L    L +    + D+    L  L+EL   NN L+  +P      +T L+ L + +NQL 
Sbjct: 140 LGYNELQSLPKGVFDK----LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

Query: 188 GSIASSPLAHLTSIEELHLSDN 209
             +       L  ++ L L +N
Sbjct: 195 -RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 19/151 (12%)

Query: 91  FPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCS 148
           F     L  L +   ++   P   F     +   +L+ L ++D  L      + D+    
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAGIF-----KELKNLETLWVTDNKLQALPIGVFDQ---- 107

Query: 149 LMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLS 207
           L++L EL    N L+ SLP  V  ++T L  L +  N+L  S+       LTS++EL L 
Sbjct: 108 LVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLY 165

Query: 208 DNHFRIPISLEP-LFNH-SRLKIFDAENNEL 236
           +N  +    +    F+  + LK    +NN+L
Sbjct: 166 NNQLK---RVPEGAFDKLTELKTLKLDNNQL 193

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 38/211 (18%), Positives = 83/211 (39%), Gaps = 21/211 (9%)

Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFL-VNDSL----AGPFRLPIHSHKRLRQLD 331
             + + L  T +    P+    N   +  +++ ++ +L    +  F    ++  ++  ++
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTHIE 86

Query: 332 VSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIP--SSFGNINLLKILDLSNNQLTGE 389
           + N     +I  +    LP L    I    L    P  +   + ++  IL++++N     
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 390 IPEHLAVG-CVYLDFLALSNN---SLEGKVLSLLS--GLDLSCNKLIGHIPPQI--GNLT 441
           IP +   G C     L L NN   S++G   +      + L+ NK +  I      G  +
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
               L++S  ++T L      +LK + + + 
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 34/188 (18%), Positives = 73/188 (38%), Gaps = 14/188 (7%)

Query: 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGNINLLKILDLSNNQ 385
            + L +   + +  IP      LPN+    +S++     + S SF N++ +  +++ N +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 386 LTGEIPEHLAVGCVYLDFLALSNNSLE-------GKVLSLLSGLDLSCNKLIGHIPPQI- 437
               I          L FL + N  L+            +   L+++ N  +  IP    
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 438 -GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKT-LEVF 494
            G      TL L +N  T +    F+  K ++++ L+ NK    I       + +   + 
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 495 SLAFNNLS 502
            ++  +++
Sbjct: 211 DVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 15/200 (7%)

Query: 17  LPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIA-SLFPSLKNL 75
            PS  TL L   +     T  +    N  N+    +S   + +  L+S +      + ++
Sbjct: 30  PPSTQTLKLIETHLR---TIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVTHI 85

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFT 133
            +        +          L+ L +    +   P+ + +     ST     L ++D  
Sbjct: 86  EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY----STDIFFILEITDNP 141

Query: 134 LSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASS 193
             T+      +GLC+      L   NN    S+     N T L  + ++ N+    I   
Sbjct: 142 YMTSIPVNAFQGLCNE--TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 194 PLAHLTS-IEELHLSDNHFR 212
               + S    L +S     
Sbjct: 199 AFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481
             ++C  +   IP         QTL L   +L  +    FSNL +I  + +S +    ++
Sbjct: 16  FRVTCKDI-QRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 482 P----HQLVELKTLE 492
                + L ++  +E
Sbjct: 72  ESHSFYNLSKVTHIE 86

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 70.3 bits (172), Expect = 7e-13
 Identities = 72/474 (15%), Positives = 154/474 (32%), Gaps = 68/474 (14%)

Query: 18  PSLNTLYLKHNNFTGTATTTTQEL-HNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLS 76
           P      L  + + G      + +  ++T LE   L    +    L+ IA  F + K L 
Sbjct: 77  PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136

Query: 77  MSYCE------VNGVVRGQGFPHFKSLEHLNMERARIAPNT-SFLQIIGESTPSLKYLSL 129
           +S CE      +  +         ++L+ L++  + +   +  +L    ++  SL  L++
Sbjct: 137 LSSCEGFSTDGLAAIAAT-----CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191

Query: 130 SDFTLSTNSSRILDRGLCSLMH----LQELYKVNNDLRGSLPWCVANMTSLRILDVS--S 183
           S       +S +    L  L+     L+ L          L   +     L  L     +
Sbjct: 192 SCL-----ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246

Query: 184 NQLTGSIASSPLAHLTSIEEL-HLSDNHFRIPISLEPLFNH-SRLKIFDAENNELNAEIT 241
            ++   + S     L+  +EL  LS     +P  L  +++  SRL   +     + +   
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY-- 304

Query: 242 ESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW------ 295
           +   L     +LQ L +     D A          DL  + +  ++     PN       
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 296 ---LLENNTKLKTLFLVNDSL--AGPFRLPIHSHKRLRQLDVSNNNFQG--HIPLEIGDI 348
              +     KL+++      +  A        +   + +  +     +   ++ LE  DI
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAA-LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422

Query: 349 --------LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVY 400
                     +L   ++S    D            +++L ++    +     H+  GC  
Sbjct: 423 GFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482

Query: 401 LDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 454
           L  L + +                 C      +      L  +++L +S  +++
Sbjct: 483 LRKLEIRD-----------------CPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 68.8 bits (168), Expect = 3e-12
 Identities = 75/496 (15%), Positives = 160/496 (32%), Gaps = 75/496 (15%)

Query: 42  HNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCE----VNGVVRGQG------- 90
           +         +   + +     ++   FP ++++ +         N V  G G       
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97

Query: 91  ---FPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLC 147
                 +  LE + ++R  +      L++I +S  + K L LS      +       GL 
Sbjct: 98  EAMSSSYTWLEEIRLKRMVV--TDDCLELIAKSFKNFKVLVLS------SCEGFSTDGLA 149

Query: 148 SLM----HLQELYKVNNDLRG----SLPWCVANMTSLRILDVS--SNQLTGSIASSPLAH 197
           ++     +L+EL    +D+       L       TSL  L++S  +++++ S     +  
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209

Query: 198 LTSIEELHLSDNHFRIPISLEPLFNH-SRLKIFDAE--NNELNAEITESYSLTTPNF-QL 253
             +++ L L+         L  L     +L+         E+  ++    S+      +L
Sbjct: 210 CPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVND-S 312
           + L            P        L  ++LS+  +       LL    KL+ L++++   
Sbjct: 268 RCLSGFWDAVPAY-LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE 326

Query: 313 LAGPFRLPIHSHKRLRQLDVSNNNFQGHIP---------LEIGDILPNLISFNISMNAL- 362
            AG   L       LR+L V  +      P         + +    P L S       + 
Sbjct: 327 DAGLEVLASTCKD-LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385

Query: 363 DGSIPSSFGNINLLKILDLS----------NNQLTGEIPEHLAVGCVYLDFLALS----N 408
           + ++ +   N   +    L             +        +   C  L  L+LS    +
Sbjct: 386 NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTD 445

Query: 409 NSLE--GKVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSH-NNLTGLIPSTF 461
              E  G     +  L ++        + H+   +     ++ L +         + +  
Sbjct: 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKLEIRDCPFGDKALLANA 502

Query: 462 SNLKHIESLDLSYNKL 477
           S L+ + SL +S   +
Sbjct: 503 SKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 60/425 (14%), Positives = 127/425 (29%), Gaps = 36/425 (8%)

Query: 16  SLPSLNTLYLKH-NNFTGTATTTTQELHNFTNLEYSTLSGSS---LHISLLQSIASLFPS 71
           S  +   L L     F+              NL+   L  S    +    L      + S
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAI--AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185

Query: 72  LKNLSMSYCEVNGVVRGQGFPHF----KSLEHLNMERARIAPNTSFLQIIGESTPSLKYL 127
           L +L++S       V             +L+ L + RA        L  + +  P L+ L
Sbjct: 186 LVSLNISCLASE--VSFSALERLVTRCPNLKSLKLNRAV---PLEKLATLLQRAPQLEEL 240

Query: 128 SLSDFTLSTNSSRI--LDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQ 185
               +T          L   L     L+ L    + +   LP   +  + L  L++S   
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300

Query: 186 LTGSIASSPLAHLTSIEELHL----SDNHFRIPISLEPLFNHSRLKIFDAENNELNAEIT 241
           +        L     ++ L +     D    +  S        R+   +    E N  +T
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360

Query: 242 ES--YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW---- 295
           E    S++    +L+ +L        A       ++ ++    L   +            
Sbjct: 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420

Query: 296 ------LLENNTKLKTLFLVN-DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI 348
                 ++E+   L+ L L    +      +  ++ K++  L V+           +   
Sbjct: 421 DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA-KKMEMLSVAFAGDSDLGMHHVLSG 479

Query: 349 LPNLISFNIS-MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALS 407
             +L    I      D ++ ++   +  ++ L +S+  ++    + L      L+   + 
Sbjct: 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539

Query: 408 NNSLE 412
                
Sbjct: 540 ERGAP 544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 31/236 (13%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           +        LK  + T   T      +   +++   +  ++  I  +Q I  L P++  L
Sbjct: 22  AFAETIKDNLKKKSVTDAVT-----QNELNSIDQ--IIANNSDIKSVQGIQYL-PNVTKL 73

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
            ++    N +   +   + K+L  L ++  ++  + S L    +    LK LSL      
Sbjct: 74  FLNG---NKLTDIKPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLSLEH---- 121

Query: 136 TNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPL 195
            N    ++ GL  L  L+ LY  NN +       ++ +T L  L +  NQ++  I   PL
Sbjct: 122 -NGISDIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DI--VPL 174

Query: 196 AHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL-NAEITESYSLTTPN 250
           A LT ++ L+LS NH      L  L     L + +  + E  N  I    +L  PN
Sbjct: 175 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 48/310 (15%), Positives = 93/310 (30%), Gaps = 68/310 (21%)

Query: 193 SPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ 252
                     + +L                 + +    A N+++   +            
Sbjct: 18  FSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK-SVQG---------- 63

Query: 253 LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS 312
           +QYL                    ++  + L+  K+    P   L N   L  LFL  + 
Sbjct: 64  IQYL-------------------PNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENK 101

Query: 313 LAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGN 372
           +       +   K+L+ L + +N       L     LP L S  +  N +  +  +    
Sbjct: 102 VKDLS--SLKDLKKLKSLSLEHNGISDINGLVH---LPQLESLYLGNNKI--TDITVLSR 154

Query: 373 INLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH 432
           +  L  L L +NQ++              D + L+        L+ L  L LS N  I  
Sbjct: 155 LTKLDTLSLEDNQIS--------------DIVPLAG-------LTKLQNLYLSKNH-ISD 192

Query: 433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 492
           +   +  L  +  L L          +  SNL    ++  +   L    P  + +    E
Sbjct: 193 LRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYE 249

Query: 493 VFSLAFNNLS 502
             ++ ++   
Sbjct: 250 KPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 46/311 (14%), Positives = 100/311 (32%), Gaps = 71/311 (22%)

Query: 171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFD 230
                    ++    +T +        L SI+++  +++  +   S++ +     +    
Sbjct: 21  DAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 74

Query: 231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG 290
              N+L  +I    +L                               L ++ L   K+  
Sbjct: 75  LNGNKLT-DIKPLANLKN-----------------------------LGWLFLDENKVK- 103

Query: 291 EFPNWLLENNTKLKTLFLVNDSLAGPFRL-PIHSHKRLRQLDVSNNNFQGHIPLEIGDIL 349
           +  +  L++  KLK+L L ++ ++    +  +    +L  L + NN       L     L
Sbjct: 104 DLSS--LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDITVLSR---L 155

Query: 350 PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN 409
             L + ++  N +   I      +  L+ L LS N ++              D  AL+  
Sbjct: 156 TKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS--------------DLRALAG- 198

Query: 410 SLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 469
                 L  L  L+L   + +        NL    T+  +  +L    P   S+    E 
Sbjct: 199 ------LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEK 250

Query: 470 LDLSYNKLNGK 480
            ++ ++     
Sbjct: 251 PNVKWHLPEFT 261

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.3 bits (157), Expect = 7e-12
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 367 PSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLS 420
           P +F     L+ +DLSNNQ++ E+      G   L+ L L  N +        + L  L 
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107

Query: 421 GLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
            L L+ NK+   +      +L  +  L+L  N L  +   TFS L+ I+++ L+ N
Sbjct: 108 LLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 14/130 (10%)

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLI 430
             + L  N +   IP         L  + LSNN    L       L  L+ L L  NK+ 
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 431 GHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH----QL 485
             +P  +   L  +Q L L+ N +  L    F +L ++  L L  NKL   I       L
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPL 151

Query: 486 VELKTLEVFS 495
             ++T+ +  
Sbjct: 152 RAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILD 180
             L+ + LS+  +S  +          L  L  L    N +   LP  +   + SL++L 
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFR 212
           +++N++   +       L ++  L L DN  +
Sbjct: 111 LNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 422 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL--- 477
           + L  N  I  IPP       +++ ++LS+N ++ L P  F  L+ + SL L  NK+   
Sbjct: 37  IRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 478 NGKIPHQLVELKTLEVFSLAFNNLS 502
              +   L  L+ L    L  N ++
Sbjct: 96  PKSLFEGLFSLQLL---LLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP----HQLVELKTLEVFSL 496
             I  + L  N +  + P  FS  K +  +DLS N+++ ++       L  L +L    L
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL---VL 87

Query: 497 AFNNLS 502
             N ++
Sbjct: 88  YGNKIT 93

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 14/124 (11%)

Query: 91  FPHFKSLEHLNMERARIA--PNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCS 148
           F  +K L  +++   +I+     +F  +      SL  L L    ++     + +     
Sbjct: 52  FSPYKKLRRIDLSNNQISELAPDAFQGL-----RSLNSLVLYGNKITELPKSLFEG---- 102

Query: 149 LMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLS 207
           L  LQ L    N +   L      ++ +L +L +  N+L  +IA    + L +I+ +HL+
Sbjct: 103 LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLA 160

Query: 208 DNHF 211
            N F
Sbjct: 161 QNPF 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLI 430
             L L+NN+ T      +      L  +  SNN    +E       S ++ + L+ N+L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 431 GHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH----QL 485
             +  ++   L  ++TL L  N +T +   +F  L  +  L L  N++   +       L
Sbjct: 95  N-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTL 152

Query: 486 VELKTLEVFS 495
             L TL + +
Sbjct: 153 HSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 368 SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSG 421
             F  +  L+ ++ SNN++T +I E    G   ++ + L++N   +++ K+   L  L  
Sbjct: 51  GIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109

Query: 422 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
           L L  N++   +       L+ ++ L+L  N +T + P  F  L  + +L+L  N
Sbjct: 110 LMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 422 LDLSCNKLIGHIPPQIG--NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479
           L L+ N+    +        L +++ +N S+N +T +    F     +  + L+ N+L  
Sbjct: 37  LRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 480 KIP----HQLVELKTLEVFSLAFNNLS 502
            +       L  LKTL    L  N ++
Sbjct: 96  -VQHKMFKGLESLKTL---MLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILD 180
           P L+ ++ S+  ++       +        + E+   +N L  ++   +   + SL+ L 
Sbjct: 57  PQLRKINFSNNKITDIEEGAFE----GASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFR 212
           + SN++T  + +     L+S+  L L DN   
Sbjct: 112 LRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 62  LQSI-ASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA--PNTSFLQIIG 118
           L  I   +      L ++  E   +     F     L  +N    +I      +F     
Sbjct: 23  LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF----- 77

Query: 119 ESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-ANMTSLR 177
           E    +  + L+   L     ++       L  L+ L   +N +   +       ++S+R
Sbjct: 78  EGASGVNEILLTSNRLENVQHKMFKG----LESLKTLMLRSNRIT-CVGNDSFIGLSSVR 132

Query: 178 ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
           +L +  NQ+T ++A      L S+  L+L  N F
Sbjct: 133 LLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 54/344 (15%), Positives = 98/344 (28%), Gaps = 74/344 (21%)

Query: 175 SLRILDVSSNQLTGSIA---SSPLAHLTSIEELHLSDNHFRIP----ISLEPLFNHSRLK 227
           S+    +  + +T        + L    S++E+ LS N         +S E + +   L+
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS-ENIASKKDLE 63

Query: 228 IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTK 287
           I +  +        E                           + L     L  V LS   
Sbjct: 64  IAEFSDIFTGRVKDE------------------IPEALRLLLQALLKCPKLHTVRLSDNA 105

Query: 288 MNGEFPNWL---LENNTKLKTLFLVNDSL-------------AGPFRLPIHSHKRLRQLD 331
                   L   L  +T L+ L+L N+ L                      +   LR + 
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165

Query: 332 VSNNNFQGHIPLEIGDIL---PNLISFNISMNAL-----DGSIPSSFGNINLLKILDLSN 383
              N  +     E          L +  +  N +     +  +         LK+LDL +
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 384 NQLTGE----IPEHLAVGCVYLDFLALSNNSLEGK-VLSLLSGLDLSCNKLIGHIPPQIG 438
           N  T      +   L      L  L L++  L  +   +++       N           
Sbjct: 226 NTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVVDAFSKLEN----------- 273

Query: 439 NLTRIQTLNLSHNNLT-----GLIPSTFSNLKHIESLDLSYNKL 477
               +QTL L +N +       L       +  +  L+L+ N+ 
Sbjct: 274 --IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 47/230 (20%), Positives = 77/230 (33%), Gaps = 28/230 (12%)

Query: 10  LLQSMGSLPSLNTLYLKHNNFTG-TATTTTQELHNFTNLEYSTLS------------GSS 56
           LLQ++   P L+T+ L  N F           L   T LE+  L               +
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 57  LHISLLQSIASLFPSLKNLSMSYC--EVNGVVR-GQGFPHFKSLEHLNMERARIAPN--T 111
           L    +   A   P L+++       E   +    + F   + L  + M +  I P    
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205

Query: 112 SFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVA 171
             L         LK L L D T +   S  L   L S  +L+EL   +  L       V 
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265

Query: 172 NM------TSLRILDVSSNQLTG----SIASSPLAHLTSIEELHLSDNHF 211
           +         L+ L +  N++      ++ +     +  +  L L+ N F
Sbjct: 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 49/294 (16%), Positives = 91/294 (30%), Gaps = 40/294 (13%)

Query: 5   RDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTT-TQELHNFTNLEYSTLSG------SSL 57
            D   +   +    S+  + L  N     A    ++ + +  +LE +  S          
Sbjct: 19  EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDE 78

Query: 58  HISLLQSIASLF---PSLKNLSMSYCEV--NGVVR-GQGFPHFKSLEHLNMERARIAP-- 109
               L+ +       P L  + +S                     LEHL +    + P  
Sbjct: 79  IPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138

Query: 110 --------NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNND 161
                       +    ++ P L+ +      L   S +   +   S   L  +  V N 
Sbjct: 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 162 LR-----GSLPWCVANMTSLRILDVSSNQLT--GSIA-SSPLAHLTSIEELHLSDNHFR- 212
           +R       L   +A    L++LD+  N  T  GS A +  L    ++ EL L+D     
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

Query: 213 -----IPISLEPLFNHSRLKIFDAENNELNAEITE--SYSLTTPNFQLQYLLLS 259
                +  +   L N   L+    + NE+  +        +      L +L L+
Sbjct: 259 RGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 23/133 (17%)

Query: 368 SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN 427
           + + N    + LDL   ++   I E+L       D +  S+N +       L G      
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRK-----LDGFP---- 61

Query: 428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG-KIPHQLV 486
                       L R++TL +++N +  +       L  +  L L+ N L        L 
Sbjct: 62  -----------LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110

Query: 487 ELKTLEVFSLAFN 499
            LK+L    +  N
Sbjct: 111 SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 83  NGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRIL 142
             + +   + +      L++   +I      ++ +G +      +  SD     N  R L
Sbjct: 7   ELIEQAAQYTNAVRDRELDLRGYKI----PVIENLGATLDQFDAIDFSD-----NEIRKL 57

Query: 143 DRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIE 202
           D G   L  L+ L   NN +          +  L  L +++N L       PLA L S+ 
Sbjct: 58  D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 203 ELHLSDNHFRIPISLEPLFNHSRLKIF 229
            L +  N    P++ +    H RL + 
Sbjct: 117 YLCILRN----PVTNKK---HYRLYVI 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
                 LDL   K I  I      L +   ++ S N +  L    F  L+ +++L ++ N
Sbjct: 18  AVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN 74

Query: 476 KLNGKIPHQLVELKTLEVFSLAFNNLS 502
           ++          L  L    L  N+L 
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 14/145 (9%)

Query: 39  QELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLE 98
            +  N        L      I +++++ +       +  S    N + +  GFP  + L+
Sbjct: 13  AQYTNAVRDR--ELDLRGYKIPVIENLGATLDQFDAIDFSD---NEIRKLDGFPLLRRLK 67

Query: 99  HLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKV 158
            L +   RI       + + ++ P L  L L++ +L       LD  L SL  L  L  +
Sbjct: 68  TLLVNNNRI---CRIGEGLDQALPDLTELILTNNSLV--ELGDLDP-LASLKSLTYLCIL 121

Query: 159 NN---DLRGSLPWCVANMTSLRILD 180
            N   + +    + +  +  +R+LD
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 115 QIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMT 174
           ++I ++      +   +  L      +++    +L     +   +N++R  L      + 
Sbjct: 7   ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLR 64

Query: 175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENN 234
            L+ L V++N++   I       L  + EL L++N       L+PL +   L       N
Sbjct: 65  RLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

Query: 235 EL 236
            +
Sbjct: 124 PV 125

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 416 LSLLSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 474
              L+ L +   + + H+  + +  L  ++ L +  + L  + P  F     +  L+LS+
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 475 NKLNGKIPHQLVELKTLEVFSLAFNNL 501
           N L   +  + V+  +L+   L+ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 8e-08
 Identities = 24/115 (20%), Positives = 33/115 (28%), Gaps = 21/115 (18%)

Query: 365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDL 424
                      L  L + N Q    +      G   L  L +  + L             
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR------------ 69

Query: 425 SCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
                   + P       R+  LNLS N L  L   T   L  ++ L LS N L+
Sbjct: 70  -------FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 3/107 (2%)

Query: 423 DLSC-NKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGK 480
            L C           +     +  L + +   L  L       L  + +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 481 IPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC 527
            P        L   +L+FN L   +     Q  +  E    GN   C
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRG-LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILD 180
            +L  L +     +    + L+   L  L  L+ L  V + LR   P        L  L+
Sbjct: 31  ENLTELYIE----NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFR 212
           +S N L  S++   +  L S++EL LS N   
Sbjct: 87  LSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
           + L +L + N     H+ L     L  L +  I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 385 QLTGEIPEHLAVGCVYLDFLALSNNSL 411
            L   +      G + L  L LS N L
Sbjct: 91  ALE-SLSWKTVQG-LSLQELVLSGNPL 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 21/129 (16%)

Query: 372 NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIG 431
             + +K L L N++      E L      L+FL+  N  L       ++ L         
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----IANLP-------- 61

Query: 432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG-KIPHQLVELKT 490
                   L +++ L LS N ++G +        ++  L+LS NK+        L +L+ 
Sbjct: 62  -------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN 114

Query: 491 LEVFSLAFN 499
           L+   L   
Sbjct: 115 LKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 411 LEGKVLSLLSGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 469
           L  +  S +  L L  ++   G +         ++ L+  +  LT +  +    L  ++ 
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKK 68

Query: 470 LDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
           L+LS N+++G +     +   L   +L+ N + 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 114 LQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLR--GSLPWCVA 171
           L++   +   +K L L +    +N  ++          L+ L  +N  L    +LP    
Sbjct: 9   LELRNRTPSDVKELVLDN--SRSNEGKLEG-LTDEFEELEFLSTINVGLTSIANLP---- 61

Query: 172 NMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDA 231
            +  L+ L++S N+++            ++  L+LS N  +   ++EPL     LK  D 
Sbjct: 62  KLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 232 ENNEL 236
            N E+
Sbjct: 121 FNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 12/141 (8%)

Query: 43  NFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNM 102
             ++++   L  S  +   L+ +   F  L+ LS       G+      P    L+ L +
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN---VGLTSIANLPKLNKLKKLEL 71

Query: 103 ERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNN-- 160
              R+   +  L+++ E  P+L +L+LS   +   S+  ++  L  L +L+ L   N   
Sbjct: 72  SDNRV---SGGLEVLAEKCPNLTHLNLSGNKIKDLST--IEP-LKKLENLKSLDLFNCEV 125

Query: 161 -DLRGSLPWCVANMTSLRILD 180
            +L          +  L  LD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 21/129 (16%)

Query: 372 NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIG 431
               ++ L L N +      E L    V L+FL+L N  L       +S L         
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLP-------- 68

Query: 432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG-KIPHQLVELKT 490
                   L +++ L LS N + G +      L ++  L+LS NKL        L +L+ 
Sbjct: 69  -------KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121

Query: 491 LEVFSLAFN 499
           L+   L   
Sbjct: 122 LKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 401 LDFLALSNNSLEGKVLSLLSGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 459
           +D     +  L  +  + +  L L   K   G I         ++ L+L +  L  +  S
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S 65

Query: 460 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
               L  ++ L+LS N++ G +     +L  L   +L+ N L 
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 16/143 (11%)

Query: 96  SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQEL 155
               ++M+R         L++   +  +++ L L       ++   ++      ++L+ L
Sbjct: 4   GSSGMDMKRRIH------LELRNRTPAAVRELVLD---NCKSNDGKIEGLTAEFVNLEFL 54

Query: 156 YKVNNDLR--GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI 213
             +N  L    +LP     +  L+ L++S N++           L ++  L+LS N  + 
Sbjct: 55  SLINVGLISVSNLP----KLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKD 109

Query: 214 PISLEPLFNHSRLKIFDAENNEL 236
             +LEPL     LK  D  N E+
Sbjct: 110 ISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 12/141 (8%)

Query: 43  NFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNM 102
               +    L     +   ++ + + F +L+ LS+    +  V      P    L+ L +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 103 ERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNN-- 160
              RI      L ++ E  P+L +L+LS   L   S+  L+  L  L  L+ L   N   
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSGNKLKDIST--LEP-LKKLECLKSLDLFNCEV 132

Query: 161 -DLRGSLPWCVANMTSLRILD 180
            +L          +  L  LD
Sbjct: 133 TNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 117 IGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSL 176
           +     +L++LSL +          +   L  L  L++L    N + G L      + +L
Sbjct: 44  LTAEFVNLEFLSLIN-----VGLISVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 177 RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF 229
             L++S N+L       PL  L  ++ L L +      ++        R  +F
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTNLN---DYRESVF 143

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 8/114 (7%)

Query: 299 NNTKLKTLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI 357
               ++ L L N          + +    L  L + N        +     LP L    +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 358 SMNALDGSIPSSFGNINLLKILDLSNNQLT--GEIPEHLAVGCVYLDFLALSNN 409
           S N + G +      +  L  L+LS N+L     + E L      L  L L N 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNC 130

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 32/226 (14%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
            L +     L   +      T        + ++    +G + +I  L  +     +LK L
Sbjct: 17  GLANAVKQNLGKQSV-----TDLVSQKELSGVQ--NFNGDNSNIQSLAGMQFF-TNLKEL 68

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
            +S+   N +           LE L++ R R+        + G  +  L  L L +  L 
Sbjct: 69  HLSH---NQISDLSPLKDLTKLEELSVNRNRLK------NLNGIPSACLSRLFLDNNELR 119

Query: 136 TNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPL 195
                     L  L +L+ L   NN L+ S+   +  ++ L +LD+  N++T +     L
Sbjct: 120 DTD------SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT-NT--GGL 168

Query: 196 AHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEIT 241
             L  +  + L+          EP+     L I +   +     I+
Sbjct: 169 TRLKKVNWIDLTGQ----KCVNEPVKYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 42/211 (19%), Positives = 80/211 (37%), Gaps = 27/211 (12%)

Query: 41  LHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL 100
                N     L   S  ++ L S   L   ++N +      + +    G   F +L+ L
Sbjct: 15  DPGLANAVKQNLGKQS--VTDLVSQKEL-SGVQNFNGDN---SNIQSLAGMQFFTNLKEL 68

Query: 101 NMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNN 160
           ++   +I+ + S L    +    L+ LS++        +R+ +        L  L+  NN
Sbjct: 69  HLSHNQIS-DLSPL----KDLTKLEELSVNR-------NRLKNLNGIPSACLSRLFLDNN 116

Query: 161 DLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPL 220
           +LR +    + ++ +L IL + +N+L  SI    L  L+ +E L L  N      +   L
Sbjct: 117 ELRDTDS--LIHLKNLEILSIRNNKLK-SI--VMLGFLSKLEVLDLHGNEIT---NTGGL 168

Query: 221 FNHSRLKIFDAENNEL-NAEITESYSLTTPN 250
               ++   D    +  N  +     L   N
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 14/131 (10%)

Query: 376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEG-KVLSLLSGLDLSCNKLIG 431
               +L    +T  + +        +      N+   SL G +  + L  L LS N+ I 
Sbjct: 21  AVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-IS 76

Query: 432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 491
            + P + +LT+++ L+++ N L  L     + L     L L  N+L       L+ LK L
Sbjct: 77  DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSR---LFLDNNELR-DTDS-LIHLKNL 130

Query: 492 EVFSLAFNNLS 502
           E+ S+  N L 
Sbjct: 131 EILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 37/236 (15%), Positives = 79/236 (33%), Gaps = 36/236 (15%)

Query: 278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNF 337
               +L    +         +  + ++     N ++       +     L++L +S+N  
Sbjct: 21  AVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQ- 74

Query: 338 QGHIPLEIGDI-----LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE 392
                  I D+     L  L   +++ N L     +   +  L   L L NN+L     +
Sbjct: 75  -------ISDLSPLKDLTKLEELSVNRNRL--KNLNGIPSACL-SRLFLDNNELRD--TD 122

Query: 393 HLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 448
            L      L+ L++ NN L+       LS L  LDL  N+ I +    +  L ++  ++L
Sbjct: 123 SLI-HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNE-ITNTGG-LTRLKKVNWIDL 179

Query: 449 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI--PHQLVELKTLEVFSLAFNNLS 502
           +              L    ++       +G+   P+ +    +     + +    
Sbjct: 180 TGQKCVNEPVKYQPELYITNTV----KDPDGRWISPYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 29/225 (12%), Positives = 73/225 (32%), Gaps = 47/225 (20%)

Query: 170 VANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF 229
              + +    ++    +T          L+ ++  +  +++ +   SL  +   + LK  
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 230 DAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMN 289
              +N+++ +++                              L     LE + ++  ++ 
Sbjct: 69  HLSHNQIS-DLS-----------------------------PLKDLTKLEELSVNRNRLK 98

Query: 290 GEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDIL 349
               N     +  L  LFL N+ L       +   K L  L + NN  +  + L     L
Sbjct: 99  ----NLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLG---FL 149

Query: 350 PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHL 394
             L   ++  N +  +       +  +  +DL+  +   E  ++ 
Sbjct: 150 SKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 69/289 (23%)

Query: 193 SPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ 252
            P   L +  + +L          L      S ++ F+ +N+ +                
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNI---------------- 53

Query: 253 LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS 312
                              +    +L+ + LSH +++ +     L++ TKL+ L +  + 
Sbjct: 54  --------------QSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNR 96

Query: 313 LAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGN 372
           L     L       L +L + NN  +    L     L NL   +I  N L  SI    G 
Sbjct: 97  LK---NLNGIPSACLSRLFLDNNELRDTDSLI---HLKNLEILSIRNNKLK-SI-VMLGF 148

Query: 373 INLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH 432
           ++ L++LDL  N++T              +   L+        L  ++ +DL+  K    
Sbjct: 149 LSKLEVLDLHGNEIT--------------NTGGLTR-------LKKVNWIDLTGQKC--- 184

Query: 433 IPPQIGNLTRIQTLNLSHNNLTGLI-PSTFSNLKHIESLDLSYNKLNGK 480
           +   +     +   N   +     I P   SN        + +      
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 59.5 bits (144), Expect = 9e-10
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 18/196 (9%)

Query: 44  FTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNME 103
              +++  LS S + +S L  I S    L+NLS+    ++  +         +L  LN+ 
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLS 150

Query: 104 RARIAPNTSFLQIIGESTPSLKYLSLSD-FTLSTNSSRILDRGLCSLMHLQELYKVNNDL 162
                   + LQ +  S   L  L+LS  F  +    ++    +     + +L     +L
Sbjct: 151 GCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQL-----NL 202

Query: 163 RG--------SLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIP 214
            G         L   V    +L  LD+S + +  +        L  ++ L LS  +  IP
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262

Query: 215 ISLEPLFNHSRLKIFD 230
            +L  L     LK   
Sbjct: 263 ETLLELGEIPTLKTLQ 278

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 30/210 (14%), Positives = 68/210 (32%), Gaps = 32/210 (15%)

Query: 15  GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKN 74
                    ++  +N     +T    L   + L+  +L G  L   ++ ++A    +L  
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVR 146

Query: 75  LSMSYCE------VNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
           L++S C       +  ++          L+ LN+              +   + ++  L+
Sbjct: 147 LNLSGCSGFSEFALQTLLS-----SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201

Query: 129 LSDFTLSTNSSRILDRGLCSLM----HLQELYKVNNDLRGSLP------WCVANMTSLRI 178
           LS +        +    L +L+    +L  L     DL  S+            +  L+ 
Sbjct: 202 LSGYR-----KNLQKSDLSTLVRRCPNLVHL-----DLSDSVMLKNDCFQEFFQLNYLQH 251

Query: 179 LDVSSNQLTGSIASSPLAHLTSIEELHLSD 208
           L +S            L  + +++ L +  
Sbjct: 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 34/204 (16%), Positives = 73/204 (35%), Gaps = 24/204 (11%)

Query: 278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSN-NN 336
           ++++DLS++ +     + +L   +KL+ L L    L+ P    +  +  L +L++S  + 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 337 FQGHIPLEIGDILPNLISFNIS--MNALDGSIPSSFGNI-NLLKILDLS--NNQLTGEIP 391
           F       +      L   N+S   +  +  +  +  ++   +  L+LS     L     
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 392 EHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH- 450
             L   C  L  L LS+                    L      +   L  +Q L+LS  
Sbjct: 215 STLVRRCPNLVHLDLSD-----------------SVMLKNDCFQEFFQLNYLQHLSLSRC 257

Query: 451 NNLTGLIPSTFSNLKHIESLDLSY 474
            ++          +  +++L +  
Sbjct: 258 YDIIPETLLELGEIPTLKTLQVFG 281

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 48/351 (13%), Positives = 101/351 (28%), Gaps = 59/351 (16%)

Query: 171 ANMTSLRILDVSSNQLTGS----IASSPLAHLTSIEELHLSDNHFR----IPISLEPLFN 222
           +    +  LD+S N L       +  +      S+  L+LS N         +       
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 223 HSRLKIFDAENNELNAEITE--SYSLTTPNFQLQYLLLSS---GYGDGATFPKFLYHQH- 276
            + +   +   N L+ + ++    +L    F +  L L          + F +   +   
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 277 DLEYVDLSHTKMNGE----FPNWLLENNTKLKTLFLVN--------DSLAGPFRLPIHSH 324
            +  ++L    +  +        L      + +L L            LA          
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA---SIP 195

Query: 325 KRLRQLDVSNNNFQGHIPLEIGDIL----PNLISFNISMNALDGS----IPSSFGNINLL 376
             +  LD+S N        E+  I      +++S N+ +N L G     +     ++  L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQ 436
           + + L  + +     E     C  L   A  N          +  +D +  ++       
Sbjct: 256 QTVYLDYDIVKNMSKE----QCKAL-GAAFPNIQK-------IILVDKNGKEIHPSHSIP 303

Query: 437 IGNL-----TRIQTLNLSHNNLT-----GLIPSTFSNLKHIESLDLSYNKL 477
           I NL      +    +L +  L             +    +     +   L
Sbjct: 304 ISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 36/125 (28%), Positives = 47/125 (37%), Gaps = 14/125 (11%)

Query: 360 NALDGSIPSSFGNINLLKILDLSNNQLT---GEIPEHLAVGCVYLDFLALSNN---SLEG 413
           N +    P  F ++  LK L L +NQL      + + L      L  L L  N    L  
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTVLPS 105

Query: 414 KV---LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 470
            V   L  L  L + CNKL   +P  I  LT +  L L  N L  +    F  L  +   
Sbjct: 106 AVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164

Query: 471 DLSYN 475
            L  N
Sbjct: 165 YLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 23/133 (17%)

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLI 430
           +IL L +NQ+T ++   +    + L  L L +N   +L   V   L+ L+ LDL  N+L 
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL- 100

Query: 431 GHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 489
             +P  +   L  ++ L +  N LT  +P     L H+  L L  N+L   IPH      
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHG----- 153

Query: 490 TLEVFSLAFNNLS 502
                  AF+ LS
Sbjct: 154 -------AFDRLS 159

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 22/145 (15%)

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLI 430
           + LDL +  L   + +    G   L +L L  N   +L   V   L+ L  L L+ N+L 
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL- 95

Query: 431 GHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH----QL 485
             +P  +  +LT++  L L  N L  L    F  L  ++ L L+ N+L   IP     +L
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 486 VELKTLE--------VFSLAFNNLS 502
             L+TL         V   AF+ L 
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLG 179

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 12/156 (7%)

Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSS-FGNINLLKILDLSNNQL 386
            +LD+ +      +       L  L   N+  N L  ++ +  F ++  L  L L+NNQL
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQL 95

Query: 387 TGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLIGHIPPQI-GN 439
              +P  +      LD L L  N   SL   V   L+ L  L L+ N+L   IP      
Sbjct: 96  A-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDK 153

Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
           LT +QTL+LS N L  +    F  L  ++++ L  N
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLI 430
             L L++N+L     + L     +L  L L  N    +E       S +  L L  NK+ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI- 90

Query: 431 GHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
             I  ++   L +++TLNL  N ++ ++P +F +L  + SL+L+ N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 12/92 (13%)

Query: 422 LDLSCNKLIGHIPPQ--IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479
           L L+ N+ +G I      G L  +  L L  N LTG+ P+ F    HI+ L L  NK+  
Sbjct: 34  LLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 480 KIPH----QLVELKTLEVFSLAFNNLSGEIPE 507
           +I +     L +LKTL   +L  N +S  +  
Sbjct: 92  EISNKMFLGLHQLKTL---NLYDNQISC-VMP 119

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 30/181 (16%)

Query: 343 LEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV--GCVY 400
               + L ++     + + +  S+      +  ++ L L  N+L       ++       
Sbjct: 34  AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLHD-----ISALKELTN 86

Query: 401 LDFLALSNN---SLEGKV---LSLLSGLDLSCNKLIGHIPPQIGN-LTRIQTLNLSHNNL 453
           L +L L+ N   SL   V   L+ L  L L  N+L   +P  + + LT +  LNL+HN L
Sbjct: 87  LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQL 145

Query: 454 TGLIPSTFSNLKHIESLDLSYNKLNGKIPH----QLVELKTLEVFS--L------AFNNL 501
             L    F  L ++  LDLSYN+L   +P     +L +LK L ++   L       F+ L
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204

Query: 502 S 502
           +
Sbjct: 205 T 205

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 14/149 (9%)

Query: 64  SIASL--FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
           S+        L ++       + +   QG  +  ++ +L +   ++   ++      +  
Sbjct: 30  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL-----KEL 84

Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVAN-MTSLRILD 180
            +L YL L+   L +  + + D+    L +L+EL  V N L+ SLP  V + +T+L  L+
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDK----LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDN 209
           ++ NQL  S+       LT++ EL LS N
Sbjct: 140 LAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481
           L L  N+    +P ++ N   +  ++LS+N ++ L   +FSN+  + +L LSYN+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 482 PH----QLVELKTLEVFSLAFNNLSGEIPE 507
           P      L  L+ L   SL  N++S  +PE
Sbjct: 94  PPRTFDGLKSLRLL---SLHGNDIS-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 21/112 (18%)

Query: 365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDL 424
            +P    N   L ++DLSNN+++                  LSN S     ++ L  L L
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-----------------TLSNQSFSN--MTQLLTLIL 85

Query: 425 SCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
           S N+L   IPP+    L  ++ L+L  N+++ +    F++L  +  L +  N
Sbjct: 86  SYNRL-RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 400 YLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIP 458
           YLD    +    E      L+ +DLS N+ I  +  Q   N+T++ TL LS+N L  + P
Sbjct: 37  YLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95

Query: 459 STFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
            TF  LK +  L L  N ++  +P              AFN+LS
Sbjct: 96  RTFDGLKSLRLLSLHGNDIS-VVPEG------------AFNDLS 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 404 LALSNNSLEG--KVLSLLSG---LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP 458
           L      +E     LS L     L LS N  I  I   +  +  ++ L+L  N +   I 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISS-LSGMENLRILSLGRNLIKK-IE 86

Query: 459 STFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
           +  +    +E L +SYN++   +   + +L  L V  ++ N ++
Sbjct: 87  NLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
            + K+L+LS   +     +I    L  + +L+ L    N ++  +    A   +L  L +
Sbjct: 48  KACKHLALSTNNIE----KI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI 100

Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEIT 241
           S NQ+  S+  S +  L ++  L++S+N       ++ L    +L+      N L  +  
Sbjct: 101 SYNQIA-SL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

Query: 242 ESYSLT 247
           E+ + +
Sbjct: 158 ENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 35/169 (20%), Positives = 59/169 (34%), Gaps = 50/169 (29%)

Query: 321 IHSHKRLRQLDVSNNNFQGHIPLEIGDI-----LPNLISFNISMNALDGSIPSSFGNINL 375
           + + K  + L +S NN        I  I     + NL   ++  N +   I +     + 
Sbjct: 44  LSTLKACKHLALSTNN--------IEKISSLSGMENLRILSLGRNLIK-KIENLDAVADT 94

Query: 376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-KVLSLLSGLDLSCNKL--IGH 432
           L+ L +S NQ+                       SL G + L  L  L +S NK+   G 
Sbjct: 95  LEELWISYNQIA----------------------SLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 433 IPPQIGNLTRIQTLNLSHNNLTGLIPST----------FSNLKHIESLD 471
           I   +  L +++ L L+ N L                    L +++ LD
Sbjct: 133 IDK-LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 20/140 (14%)

Query: 93  HFKSLEHLNMERARIAPNTSFLQIIG-ESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMH 151
             K+ +HL +    I       +I       +L+ LSL       N  + ++        
Sbjct: 46  TLKACKHLALSTNNIE------KISSLSGMENLRILSLGR-----NLIKKIENLDAVADT 94

Query: 152 LQELYKVNN---DLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSD 208
           L+EL+   N    L G     +  + +LR+L +S+N++T       LA L  +E+L L+ 
Sbjct: 95  LEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 209 NHFRIPISLEPLFNHSRLKI 228
           N            +  R+++
Sbjct: 150 NPLYNDYKENNATSEYRIEV 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 8   SKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIAS 67
            K+  ++ +L +   L L  NN           L    NL    LS     I  ++++ +
Sbjct: 38  EKMDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRI--LSLGRNLIKKIENLDA 90

Query: 68  LFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYL 127
           +  +L+ L +SY   N +    G     +L  L M   +I       ++   +   L+ L
Sbjct: 91  VADTLEELWISY---NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL--AALDKLEDL 145

Query: 128 SLSD 131
            L+ 
Sbjct: 146 LLAG 149

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 360 NALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV- 415
           N+L       F  +  L  L L  N+L   +P  +      L +L LS N   SL   V 
Sbjct: 38  NSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96

Query: 416 --LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
             L+ L  L L+ N+L   +P  +   LT+++ L L  N L  +    F  L  ++ + L
Sbjct: 97  DKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155

Query: 473 SYN 475
             N
Sbjct: 156 HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLI 430
             LDL  N L   +P  +      L  L L  N   SL   V   L+ L+ L+LS N+L 
Sbjct: 31  TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL- 88

Query: 431 GHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH----QL 485
             +P  +   LT+++ L L+ N L  L    F  L  ++ L L  N+L   +P     +L
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRL 147

Query: 486 VELKTLEVFS 495
             L+ + +  
Sbjct: 148 TSLQYIWLHD 157

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481
           LDL  N L          LT +  L L  N L  L    F+ L  +  L+LS N+L   +
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 482 PH----QLVELKTLEVFSLAFNNLSGEIPE 507
           P+    +L +LK L   +L  N L   +P+
Sbjct: 92  PNGVFDKLTQLKEL---ALNTNQLQ-SLPD 117

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 2e-06
 Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 29/179 (16%)

Query: 321 IHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINL--LKI 378
           + +   L  L +   N             PNL S  I    L  S+       +L  L+ 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 379 LDL---SNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPP 435
           L L     +                                  L  L +   +    +  
Sbjct: 224 LVLYVGVEDYGFDGDMNVFR-------------PLFSKDRFPNLKWLGIVDAEEQNVVVE 270

Query: 436 QIGN---LTRIQTLNLSHNNLTG----LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 487
                  L +++T+++S   LT     L+      +KH++ +++ YN L+ ++  +L +
Sbjct: 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 31/232 (13%)

Query: 10  LLQSMGSLPSLNTLYLKHNNFTGTATTTTQE------LHNFTNLEYSTLS-GSSLHISLL 62
           ++++         L+    +F     +  ++      L     L    +   ++L I   
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK 190

Query: 63  QSIASLFPSLKNLSMSYCEV-NGVVRGQGFPHFKSLEHLNME--------RARIAPNTSF 113
                  P+LK+L +    + + VV         +LE L +            +      
Sbjct: 191 PR-----PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245

Query: 114 LQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS----LPWC 169
                +  P+LK+L + D         +       L  L+ +      L       L   
Sbjct: 246 FS--KDRFPNLKWLGIVDAEEQNVVVEMFLESDI-LPQLETMDISAGVLTDEGARLLLDH 302

Query: 170 VANMTSLRILDVSSNQLTGSIA---SSPLAHLTSIEELHLSDNHFRIPISLE 218
           V  +  L+ +++  N L+  +       L     + +    D+ +  P+  E
Sbjct: 303 VDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYSYPMITE 354

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 3e-05
 Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 26/177 (14%)

Query: 342 PLEIGDILPNLISF-NISMNALDGSIPSSFGNINL--LKILDLSNNQLTGEIPEHLAVGC 398
            +E  D+ P L +   ++   + G+   S G      LK L++ +  L   + E +    
Sbjct: 158 WIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 399 V----YLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 454
           +     L       +      +++   L                    ++ L +      
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPL------------FSKDRFPNLKWLGIVDAEEQ 265

Query: 455 GLIPS---TFSNLKHIESLDLSYNKLNGK----IPHQLVELKTLEVFSLAFNNLSGE 504
            ++         L  +E++D+S   L  +    +   + ++K L+  ++ +N LS E
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 8e-05
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 319 LPIHSHKRLRQLDVSNNNFQGHIPLEIG--DILPNLISFNISMNALDGS----IPSSFGN 372
                   L+ L + +   Q  +       DILP L + +IS   L       +      
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 373 INLLKILDLSNNQLTGEIPEHLA 395
           I  LK +++  N L+ E+ + L 
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQ 328

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 7e-04
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 300 NTKLKTLFLVN--DSLAGPFRLPIHSHKRLRQLDVS--NNNFQGHIPLEI------GDIL 349
              LK+L +++     +    +       L +L +     ++     + +       D  
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 350 PNLISFNISMNALDGSIPSSFGNINL---LKILDLSNNQLTGEIPEHLAVGC---VYLDF 403
           PNL    I        +   F   ++   L+ +D+S   LT E    L        +L F
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 404 LALSNNSLEGKVLSLLS 420
           + +  N L  ++   L 
Sbjct: 312 INMKYNYLSDEMKKELQ 328

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN---SLEGKV---LSLLSGLDLSCNKLI 430
             L+L +N+L   +P  +      L  L+LS N   SL   V   L+ L+ L L  NKL 
Sbjct: 31  TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL- 88

Query: 431 GHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
             +P  +   LT+++ L L  N L  +    F  L  ++ + L  N
Sbjct: 89  QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 13/93 (13%)

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481
           L+L  NKL          LT++  L+LS N +  L    F  L  +  L L  NKL   +
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 482 PH----QLVELKTLE--------VFSLAFNNLS 502
           P+    +L +LK L         V    F+ L+
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 40/161 (24%)

Query: 376 LKILDLSNNQLTGE----IPEHLAVGCVYLDFLALSNNSL--EG-----KVLSLLSGLDL 424
           L+ L+L+  ++T      +   L  G   LD + L++  L   G      V      L L
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL 133

Query: 425 SCNKLIGHIPPQIG-------------NLTRIQTLNLSHNNLTG----LIPSTFSNLKHI 467
             N         +G             +  +I TL LS+N LT     ++    +    +
Sbjct: 134 QLN--------SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185

Query: 468 ESLDLSYNKLNGK----IPHQLVELKTLEVFSLAFNNLSGE 504
             L L +  L  +    +  QL   + L+  ++A+N     
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 40/301 (13%), Positives = 80/301 (26%), Gaps = 67/301 (22%)

Query: 172 NMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR----IPISLEPLFNHSRLK 227
              +L  ++++S QL  +   + L       +L L  N         +    L +  ++ 
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 228 IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTK 287
                NN L A                  +L  G          L     + ++ L HT 
Sbjct: 159 TLRLSNNPLTAAGVA--------------VLMEG----------LAGNTSVTHLSLLHTG 194

Query: 288 MNGEFPNWL---LENNTKLKTLFLVNDSL----AGPFRLPIHSHKRLRQLDVSNNNFQGH 340
           +  E    L   L+ N +L+ L +  +      A         H  L  L +  N     
Sbjct: 195 LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE---- 250

Query: 341 IPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVY 400
               +      ++                      + +       ++           V 
Sbjct: 251 ----LSSEGRQVLRDLGGAAE----------GGARVVVSLTEGTAVS-------EYWSVI 289

Query: 401 LDFLALSNNSLEGKVLSL---LSGLDLSCNKLIGHIPPQIGNL----TRIQTLNLSHNNL 453
           L  +  + NS +   +     L   DL  ++     P +   L      ++ L     + 
Sbjct: 290 LSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

Query: 454 T 454
            
Sbjct: 350 G 350

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 64/410 (15%), Positives = 116/410 (28%), Gaps = 143/410 (34%)

Query: 23  LYLKHNNFTGTATTTTQELHNFTNLEYSTL-----SGSSLHISLLQSIASLFPSLKNLSM 77
           + L H++ T T       L  + +     L     + +   +S+   IA           
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---IAESIRDGLA--- 342

Query: 78  SYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLK-------YLSLS 130
                           + + +H+N ++           II  S   L+       +  LS
Sbjct: 343 ---------------TWDNWKHVNCDK--------LTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 131 DFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
            F  S +   I    L  +                  W   ++    ++ V  N+L    
Sbjct: 380 VFPPSAH---IPTILLSLI------------------WF--DVIKSDVMVVV-NKL---- 411

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
                 H  S+ E    ++   IP S+     +  LK+       L+  I + Y++    
Sbjct: 412 ------HKYSLVEKQPKESTISIP-SI-----YLELKVKLENEYALHRSIVDHYNIPK-T 458

Query: 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310
           F    L+    Y D   +    +H  ++E     H +    F    L+        FL  
Sbjct: 459 FDSDDLIPP--YLDQYFYSHIGHHLKNIE-----HPERMTLFRMVFLDFR------FL-- 503

Query: 311 DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSF 370
                         +++R    + N          G IL                     
Sbjct: 504 -------------EQKIRHDSTAWN--------ASGSIL--------------------- 521

Query: 371 GNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFL-ALSNNSLEGKVLSLL 419
              N L+ L      +    P++  +    LDFL  +  N +  K   LL
Sbjct: 522 ---NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 18/104 (17%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 119 ESTPSLKYLSLSDF-TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM---- 173
            + P L+ ++L++   +   + +     L +  ++++   V       + + +A M    
Sbjct: 33  NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN 92

Query: 174 TSLRILDVSSNQLTG----SIASSPLAHLTSIEELHLSDNHFRI 213
            +L+ L+V SN ++G    ++  + L   TS+ EL + +    +
Sbjct: 93  NTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPL 135

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 114 LQIIGESTPSLKYLSLSDF-TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVAN 172
           +  + E    LK +++++   +S    R L    C+  H+++    N  +  S    +  
Sbjct: 33  INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92

Query: 173 M----TSLRILDVSSNQLTG----SIASSPLAHLTSIEELHLSDNH 210
           +     SLR+L+V SN LT      +  S      SI E    +  
Sbjct: 93  LIETSPSLRVLNVESNFLTPELLARLLRS-TLVTQSIVEFKADNQR 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	614
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.54
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.85

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.7e-61  Score=539.30  Aligned_cols=512  Identities=30%  Similarity=0.432  Sum_probs=389.5

Q ss_pred             ccc--ccCCCCCCCEEECCCcccCCCCCCCCc-c-cCCCCCCCEEeCCCCCCCccchHH---HhhccCCcEEeccCcccc
Q 042884           10 LLQ--SMGSLPSLNTLYLKHNNFTGTATTTTQ-E-LHNFTNLEYSTLSGSSLHISLLQS---IASLFPSLKNLSMSYCEV   82 (614)
Q Consensus        10 l~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~-l~~l~~L~~L~Ls~n~~~~~~~~~---~~~l~~l~~l~l~~~~~~   82 (614)
                      +|.  .++++++|++|+|++|.+++.    .+ . +.++++|++|++++|.+.+..+..   +.++++|+++++.+|.+.
T Consensus       116 ~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  191 (768)
T 3rgz_A          116 VTTLTSLGSCSGLKFLNVSSNTLDFP----GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS  191 (768)
T ss_dssp             GGGGGGGGGCTTCCEEECCSSEEECC----SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEE
T ss_pred             CCChHHHhCCCCCCEEECcCCccCCc----CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccc
Confidence            455  667777777777777777654    33 2 367788888888888877666655   455555555555555544


Q ss_pred             CCccCC-------------------CCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCc
Q 042884           83 NGVVRG-------------------QGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILD  143 (614)
Q Consensus        83 ~~~~~~-------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~  143 (614)
                      +..+..                   ..++++++|++|++++|.+.+  .+|..+.. +++|++|++++|.+.+   .++.
T Consensus       192 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~-l~~L~~L~Ls~n~l~~---~~~~  265 (768)
T 3rgz_A          192 GDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG--DFSRAIST-CTELKLLNISSNQFVG---PIPP  265 (768)
T ss_dssp             SCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS--CHHHHTTT-CSSCCEEECCSSCCEE---SCCC
T ss_pred             ccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC--cccHHHhc-CCCCCEEECCCCcccC---ccCc
Confidence            332210                   025555555555555555554  45555555 5566666666555543   2222


Q ss_pred             hhhcCCCCCCeEECcCCccccccCccccCC-CCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccC
Q 042884          144 RGLCSLMHLQELYKVNNDLRGSLPWCVANM-TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFN  222 (614)
Q Consensus       144 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  222 (614)
                        . .+++|++|++++|++++.+|..+... ++|++|++++|.+.+.+|.. |+.+++|++|++++|.+.+.++...+..
T Consensus       266 --~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~  341 (768)
T 3rgz_A          266 --L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLK  341 (768)
T ss_dssp             --C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTT
T ss_pred             --c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhc
Confidence              1 44555555555555555566555553 66777777777666555543 6667777777777777766666555667


Q ss_pred             CCCccEEEccCCcccccccccccCCC------------------------CCccceeeeccCCCCCCCCCCccccCCCCC
Q 042884          223 HSRLKIFDAENNELNAEITESYSLTT------------------------PNFQLQYLLLSSGYGDGATFPKFLYHQHDL  278 (614)
Q Consensus       223 l~~L~~L~l~~n~~~~~~~~~~~~~~------------------------~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L  278 (614)
                      +++|++|++++|.+.+..+..+....                        +..+|++|++ .++...+.+|..+..+++|
T Consensus       342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L-~~n~l~~~~p~~l~~l~~L  420 (768)
T 3rgz_A          342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL-QNNGFTGKIPPTLSNCSEL  420 (768)
T ss_dssp             CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC-CSSEEEEECCGGGGGCTTC
T ss_pred             CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC-CCCccccccCHHHhcCCCC
Confidence            77777777777766644443322111                        1346788888 6666667788889999999


Q ss_pred             cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884          279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS  358 (614)
Q Consensus       279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~  358 (614)
                      ++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|..+.. +++|++|+++
T Consensus       421 ~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~  498 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLS  498 (768)
T ss_dssp             CEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECC
T ss_pred             CEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEcc
Confidence            99999999998888877 788999999999999999888888999999999999999999888887766 8999999999


Q ss_pred             CCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccc-----------------------
Q 042884          359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV-----------------------  415 (614)
Q Consensus       359 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----------------------  415 (614)
                      +|++++.+|..++.+++|++|++++|++++.+|..+ ..+++|++|++++|++++..                       
T Consensus       499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~  577 (768)
T 3rgz_A          499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY  577 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred             CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence            999999999999999999999999999998888776 68999999999999886421                       


Q ss_pred             -----------------------------------------------------cCCccEEEcCCCcCCccCCccccCCCc
Q 042884          416 -----------------------------------------------------LSLLSGLDLSCNKLIGHIPPQIGNLTR  442 (614)
Q Consensus       416 -----------------------------------------------------~~~L~~L~L~~n~l~~~~~~~~~~l~~  442 (614)
                                                                           +++|+.|+|++|++++.+|..++.+++
T Consensus       578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  657 (768)
T 3rgz_A          578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY  657 (768)
T ss_dssp             EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence                                                                 246889999999999999999999999


Q ss_pred             CCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccC
Q 042884          443 IQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEG  522 (614)
Q Consensus       443 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~  522 (614)
                      |+.|+|++|++++.+|..++++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|. ..++.++....+.|
T Consensus       658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~g  736 (768)
T 3rgz_A          658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLN  736 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCS
T ss_pred             CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999998 56788889999999


Q ss_pred             CcCCCCCCCCCCCCCCCC
Q 042884          523 NTFLCGLPLPICRSPATT  540 (614)
Q Consensus       523 n~~~c~~~~~~c~~~~~~  540 (614)
                      ||.+|+.|+..|......
T Consensus       737 N~~Lcg~~l~~C~~~~~~  754 (768)
T 3rgz_A          737 NPGLCGYPLPRCDPSNAD  754 (768)
T ss_dssp             CTEEESTTSCCCCSCC--
T ss_pred             CchhcCCCCcCCCCCccC
Confidence            999999998888665443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.3e-57  Score=504.04  Aligned_cols=496  Identities=28%  Similarity=0.355  Sum_probs=329.2

Q ss_pred             cccCCCCCCCEEECCCcccCCCCCCCCc--ccCCCCCCCEEeCCCCCCCccchHHH-hhccCCcEEeccCccccCCccCC
Q 042884           12 QSMGSLPSLNTLYLKHNNFTGTATTTTQ--ELHNFTNLEYSTLSGSSLHISLLQSI-ASLFPSLKNLSMSYCEVNGVVRG   88 (614)
Q Consensus        12 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~l~~l~l~~~~~~~~~~~~   88 (614)
                      +.|+++++|++|||++|.+++..   .+  .++.+++|++|++++|.+.+..|..+ ..+++|+++++++|.+.+..+..
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  170 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLSGPV---TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG  170 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEEEEG---GGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred             hhhccCCCCCEEECCCCcCCCcC---CChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence            34444445555555554444320   11  34444455555555444443333332 34444555555444444322210


Q ss_pred             -CCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccC
Q 042884           89 -QGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLP  167 (614)
Q Consensus        89 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~  167 (614)
                       ..+.++++|++|++++|.+.+  ..+.  .. +++|++|++++|.+.+   .++.  +.++++|++|++++|++++..|
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~l~~--~~~~--~~-l~~L~~L~Ls~n~l~~---~~~~--l~~l~~L~~L~Ls~n~l~~~~~  240 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNKISG--DVDV--SR-CVNLEFLDVSSNNFST---GIPF--LGDCSALQHLDISGNKLSGDFS  240 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSEEES--CCBC--TT-CTTCCEEECCSSCCCS---CCCB--CTTCCSCCEEECCSSCCCSCHH
T ss_pred             hhhhccCCCCCEEECCCCcccc--cCCc--cc-CCcCCEEECcCCcCCC---CCcc--cccCCCCCEEECcCCcCCCccc
Confidence             003444444444444444433  1111  33 7788888888888774   3333  7778888888888888887777


Q ss_pred             ccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCc------------------------ccccCC
Q 042884          168 WCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISL------------------------EPLFNH  223 (614)
Q Consensus       168 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~------------------------~~~~~l  223 (614)
                      .++.++++|++|++++|.+.+.+|..   .+++|++|++++|.+.+.++.                        ..+..+
T Consensus       241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  317 (768)
T 3rgz_A          241 RAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC  317 (768)
T ss_dssp             HHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred             HHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence            77888877877777777776544431   445555555555555443332                        234455


Q ss_pred             CCccEEEccCCccccccccc-ccCCCCCccceeeeccCCCCCCCCCCccccC---------------------------C
Q 042884          224 SRLKIFDAENNELNAEITES-YSLTTPNFQLQYLLLSSGYGDGATFPKFLYH---------------------------Q  275 (614)
Q Consensus       224 ~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~---------------------------l  275 (614)
                      ++|++|++++|.+.+..+.. +.   ...+|++|++ .++...+.+|..+..                           +
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~---~l~~L~~L~L-s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~  393 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLL---KMRGLKVLDL-SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK  393 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHT---TCTTCCEEEC-CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred             CCccEEECCCCcccCcCCHHHHh---cCCCCCEEeC-cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence            55555555555554332221 22   1234555555 333333333333322                           4


Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF  355 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L  355 (614)
                      ++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.+|..+.. +++|++|
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L  471 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETL  471 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEE
T ss_pred             CCccEEECCCCccccccCHH-HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEE
Confidence            45555555555555555555 567777888888888877777777777888888888888887777776665 7888888


Q ss_pred             EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcC
Q 042884          356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKL  429 (614)
Q Consensus       356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l  429 (614)
                      ++++|++++..|..+..+++|++|++++|++++.+|..+ ..+++|++|++++|++++.      .+++|+.|++++|++
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            888888888888888888888888888888887777765 6788888888888888763      357788999999988


Q ss_pred             CccCCccc----------------------------------------------------------------------cC
Q 042884          430 IGHIPPQI----------------------------------------------------------------------GN  439 (614)
Q Consensus       430 ~~~~~~~~----------------------------------------------------------------------~~  439 (614)
                      ++.+|..+                                                                      ..
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            76666433                                                                      33


Q ss_pred             CCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCccc
Q 042884          440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESS  519 (614)
Q Consensus       440 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~  519 (614)
                      +++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|+.+..+++|++|||++|++++.+|..+..++.++.++
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            56788999999999999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             ccCCcCCCCCC
Q 042884          520 YEGNTFLCGLP  530 (614)
Q Consensus       520 ~~~n~~~c~~~  530 (614)
                      +++|+.....|
T Consensus       711 ls~N~l~g~iP  721 (768)
T 3rgz_A          711 LSNNNLSGPIP  721 (768)
T ss_dssp             CCSSEEEEECC
T ss_pred             CcCCcccccCC
Confidence            99998765443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-55  Score=500.19  Aligned_cols=512  Identities=18%  Similarity=0.182  Sum_probs=371.1

Q ss_pred             cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccc-hHHHhhccCCcEEeccCccccC
Q 042884            6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISL-LQSIASLFPSLKNLSMSYCEVN   83 (614)
Q Consensus         6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~l~~l~l~~~~~~~   83 (614)
                      ..+.+|.   ..+++++|||++|.|+++    .+ .|..+++|++|++++|...+.+ +..+.++++|++|++++|.+.+
T Consensus        15 ~L~~vP~---lp~~l~~LdLs~N~i~~i----~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           15 NLTQVPQ---VLNTTERLLLSFNYIRTV----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             CSSCCCS---SCTTCCEEEEESCCCCEE----CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             CCCCCCC---CCCCcCEEECCCCcCCcc----ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence            3566775   458999999999999887    44 8999999999999999665555 7789999999999999999876


Q ss_pred             CccCCCCCCCCCCCCEEeCcCcccCCCcchhhH--hhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCc
Q 042884           84 GVVRGQGFPHFKSLEHLNMERARIAPNTSFLQI--IGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNND  161 (614)
Q Consensus        84 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~  161 (614)
                      ..|  ..|.++++|++|++++|.+.+  .++..  +.. +++|++|++++|.+++   ..++..|+++++|++|++++|.
T Consensus        88 ~~p--~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~-L~~L~~L~Ls~N~l~~---~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           88 LHP--DAFQGLFHLFELRLYFCGLSD--AVLKDGYFRN-LKALTRLDLSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             ECT--TSSCSCSSCCCEECTTCCCSS--CCSTTCCCSS-CSSCCEEEEESCCCCC---CCCCGGGGTCSSCCEEEEESSC
T ss_pred             cCH--hHccCCcccCEeeCcCCCCCc--ccccCccccc-cCCCCEEECCCCcccc---cccchhHhhCCCCCEEECCCCc
Confidence            545  479999999999999999985  45544  666 9999999999999985   4444479999999999999999


Q ss_pred             cccccCccccCC--CCCcEEEcccCCCCCccCCCCCCCCCC------CCEEEcccCcCccccCcccc-------------
Q 042884          162 LRGSLPWCVANM--TSLRILDVSSNQLTGSIASSPLAHLTS------IEELHLSDNHFRIPISLEPL-------------  220 (614)
Q Consensus       162 i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~------L~~L~L~~n~~~~~~~~~~~-------------  220 (614)
                      +++..+..+..+  ++|+.|++++|.+.+..|.. +..+++      |++|++++|.+.+..+....             
T Consensus       160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l  238 (844)
T 3j0a_A          160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL  238 (844)
T ss_dssp             CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred             CCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence            999899999887  89999999999998766654 444444      99999999977644332111             


Q ss_pred             ----------------------cC--CCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCC
Q 042884          221 ----------------------FN--HSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQH  276 (614)
Q Consensus       221 ----------------------~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~  276 (614)
                                            .+  .++|+.|++++|.+.+..+..+..+   .+|+.|++ .++.+.+..|..+..++
T Consensus       239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L-~~n~i~~~~~~~~~~l~  314 (844)
T 3j0a_A          239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL---KDLKVLNL-AYNKINKIADEAFYGLD  314 (844)
T ss_dssp             CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC---CCCCEEEE-ESCCCCEECTTTTTTCS
T ss_pred             ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC---CCCCEEEC-CCCcCCCCChHHhcCCC
Confidence                                  11  1345555555555554443333322   25555555 34444444444555555


Q ss_pred             CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEE
Q 042884          277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN  356 (614)
Q Consensus       277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~  356 (614)
                      +|++|++++|.+.+..|.. |..+++|++|++++|.+..+.+..|..+++|+.|++++|.++ .++.     +++|+.|+
T Consensus       315 ~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~L~  387 (844)
T 3j0a_A          315 NLQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPDIF  387 (844)
T ss_dssp             SCCEEEEESCCCSCCCSCS-CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSEEE
T ss_pred             CCCEEECCCCCCCccCHHH-hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-cccC-----CCCcchhc
Confidence            5555555555555333332 455555555555555555555555555555555555555554 2321     44555555


Q ss_pred             ccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-------cccCCccEEEcCCCcC
Q 042884          357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-------KVLSLLSGLDLSCNKL  429 (614)
Q Consensus       357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~L~~L~L~~n~l  429 (614)
                      +++|+++. +|..   ..+++.|++++|++++.-....+..+++|+.|++++|++++       ..+++|+.|++++|.+
T Consensus       388 l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l  463 (844)
T 3j0a_A          388 LSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML  463 (844)
T ss_dssp             EESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred             cCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence            55555552 2221   34566777777777632222334588999999999999875       2357899999999999


Q ss_pred             C-----ccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884          430 I-----GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       430 ~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  504 (614)
                      +     +..+..|.++++|++|+|++|++++.+|..|.++++|++|+|++|++++..|..+.  ++|+.|++++|++++.
T Consensus       464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~  541 (844)
T 3j0a_A          464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP  541 (844)
T ss_dssp             SSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred             ccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence            7     44556789999999999999999999999999999999999999999987777765  8999999999999998


Q ss_pred             CCccccccCCcCcccccCCcCCCCCCCC--------------------CCCCCCCCCCCCCCCCCCCCc
Q 042884          505 IPEWKAQFATFNESSYEGNTFLCGLPLP--------------------ICRSPATTPEASIGNERDDNL  553 (614)
Q Consensus       505 ~~~~~~~~~~l~~~~~~~n~~~c~~~~~--------------------~c~~~~~~~~~~~~~~~~~~~  553 (614)
                      .|..+   .+++.+++++|||.|+|+..                    .|..|....+.+........|
T Consensus       542 ~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C  607 (844)
T 3j0a_A          542 NPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC  607 (844)
T ss_dssp             CSCCC---SSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred             ChhHh---CCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccccC
Confidence            88754   57889999999999999752                    588777766666655554444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.2e-54  Score=478.81  Aligned_cols=507  Identities=19%  Similarity=0.148  Sum_probs=352.0

Q ss_pred             CCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCc
Q 042884            7 GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGV   85 (614)
Q Consensus         7 ~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~   85 (614)
                      .+++|..+.  +++++|++++|.++++    .+ .|.++++|++|++++|.+.+..|..+.++++|+++++++|.+. .+
T Consensus        16 L~~ip~~~~--~~l~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l   88 (680)
T 1ziw_A           16 LTQVPDDLP--TNITVLNLTHNQLRRL----PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QL   88 (680)
T ss_dssp             CSSCCSCSC--TTCSEEECCSSCCCCC----CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CC
T ss_pred             ccccccccC--CCCcEEECCCCCCCCc----CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-cc
Confidence            345665544  6777777777777766    34 5777777777777777777666777777777777777777655 34


Q ss_pred             cCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc
Q 042884           86 VRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS  165 (614)
Q Consensus        86 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~  165 (614)
                      |. ..|+++++|++|++++|.+.+  ..+..+.. +++|++|++++|.+++    +++..+.++++|++|++++|.+++.
T Consensus        89 ~~-~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           89 SD-KTFAFCTNLTELHLMSNSIQK--IKNNPFVK-QKNLITLDLSHNGLSS----TKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             CT-TTTTTCTTCSEEECCSSCCCC--CCSCTTTT-CTTCCEEECCSSCCSC----CCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             Ch-hhhccCCCCCEEECCCCccCc--cChhHccc-cCCCCEEECCCCcccc----cCchhhcccccCCEEEccCCccccc
Confidence            43 257777777777777777653  22344555 7777777777777663    3333566666666666666666654


Q ss_pred             cCcccc--CCCCCcEEEcccCCCCCccCC--------------------------------------------------C
Q 042884          166 LPWCVA--NMTSLRILDVSSNQLTGSIAS--------------------------------------------------S  193 (614)
Q Consensus       166 ~~~~~~--~l~~L~~L~L~~n~l~~~~~~--------------------------------------------------~  193 (614)
                      .+..+.  .+++|++|++++|.+.+..|.                                                  .
T Consensus       161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  240 (680)
T 1ziw_A          161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT  240 (680)
T ss_dssp             CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred             CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence            444432  335555555555555422221                                                  1


Q ss_pred             CCCCCC--CCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCC-----------------------
Q 042884          194 PLAHLT--SIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTT-----------------------  248 (614)
Q Consensus       194 ~~~~l~--~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----------------------  248 (614)
                      .|..++  +|++|++++|.+.+ ++...+..+++|+.|++++|.+.+..+..+....                       
T Consensus       241 ~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~  319 (680)
T 1ziw_A          241 TFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK  319 (680)
T ss_dssp             TTGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred             HhhccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccc
Confidence            233332  26666666666653 2334566667777777777766655444333211                       


Q ss_pred             -------CCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC-CCChhHHhcC--CCccEEEccCCCCCCCCC
Q 042884          249 -------PNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG-EFPNWLLENN--TKLKTLFLVNDSLAGPFR  318 (614)
Q Consensus       249 -------~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~~~--~~L~~L~l~~n~i~~~~~  318 (614)
                             ...+|++|++ .++...+..+..+..+++|++|++++|.+.. .++...|..+  ++|+.|++++|++.++.+
T Consensus       320 i~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~  398 (680)
T 1ziw_A          320 IDDFSFQWLKCLEHLNM-EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES  398 (680)
T ss_dssp             ECTTTTTTCTTCCEEEC-CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred             cChhhcccCCCCCEEEC-CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence                   1234444444 3333334444445555555555555554321 1222222222  356666667777777777


Q ss_pred             CCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccC--CcCCchhhc
Q 042884          319 LPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLT--GEIPEHLAV  396 (614)
Q Consensus       319 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~  396 (614)
                      ..|..+++|+.|++++|.+.+.+|...+..+++|++|++++|++.+..+..|..+++|+.|++++|.+.  +.+|.. +.
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-~~  477 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQ  477 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-TT
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc-cc
Confidence            788888899999999999887777666666889999999999988888888888999999999999876  345554 47


Q ss_pred             cCCCCCEEEccCCccccc------ccCCccEEEcCCCcCCccCC--------ccccCCCcCCEEECcCCcCCCCCCcCCC
Q 042884          397 GCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKLIGHIP--------PQIGNLTRIQTLNLSHNNLTGLIPSTFS  462 (614)
Q Consensus       397 ~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~  462 (614)
                      .+++|++|++++|++++.      .+++|++|++++|++++..+        ..|.++++|++|+|++|+++.+.+..|.
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence            899999999999998863      35789999999999986422        2378899999999999999987778899


Q ss_pred             CCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccc-ccCCcCcccccCCcCCCCCCC
Q 042884          463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKA-QFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       463 ~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      ++++|+.|++++|+++++.+..|..+++|+.|++++|++++..+..+. .+++++.+++++|||.|+|+.
T Consensus       558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999999999988888889999999999999999988877676 789999999999999999985

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.9e-54  Score=472.89  Aligned_cols=501  Identities=19%  Similarity=0.159  Sum_probs=425.4

Q ss_pred             cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884            6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG   84 (614)
Q Consensus         6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~   84 (614)
                      +.+++|..+.  +++++|++++|.|+++    .+ .|.++++|++|++++|.+....|..+.++++|+++++++|.+.+.
T Consensus        23 ~l~~iP~~l~--~~l~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   96 (606)
T 3t6q_A           23 GLNEIPGTLP--NSTECLEFSFNVLPTI----QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM   96 (606)
T ss_dssp             CCSSCCTTSC--TTCCEEECTTCCCSEE----CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred             CcccCcCCCC--CcCcEEEccCCccCcC----ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc
Confidence            3457777665  4899999999999987    45 899999999999999999988899999999999999999988754


Q ss_pred             ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccc
Q 042884           85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG  164 (614)
Q Consensus        85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~  164 (614)
                      .|  ..|+++++|++|++++|.+..  ..+..+.. +++|++|++++|.+.    .++...+..+++|++|++++|.+++
T Consensus        97 ~~--~~~~~l~~L~~L~L~~n~i~~--l~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           97 AE--TALSGPKALKHLFFIQTGISS--IDFIPLHN-QKTLESLYLGSNHIS----SIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             CT--TTTSSCTTCCEEECTTSCCSC--GGGSCCTT-CTTCCEEECCSSCCC----CCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             Ch--hhhcccccccEeeccccCccc--CCcchhcc-CCcccEEECCCCccc----ccCcccccCCcccCEEEcccCcccc
Confidence            45  379999999999999999984  33555666 999999999999998    4432256669999999999999998


Q ss_pred             ccCccccCCCCCc--EEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCcc-------------------------ccCc
Q 042884          165 SLPWCVANMTSLR--ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI-------------------------PISL  217 (614)
Q Consensus       165 ~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-------------------------~~~~  217 (614)
                      ..|..|..+++|+  .|++++|.+.+ ++...+. ..+|++|++++|....                         .++.
T Consensus       168 ~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~  245 (606)
T 3t6q_A          168 LSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP  245 (606)
T ss_dssp             ECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred             cChhhhhhhcccceeEEecCCCccCc-cChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence            8889999999999  99999999994 5544454 4689999999875110                         1111


Q ss_pred             ccccCCC--CccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChh
Q 042884          218 EPLFNHS--RLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW  295 (614)
Q Consensus       218 ~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~  295 (614)
                      ..+..+.  +|+.+++++|.+.+..+..|...   .+|++|++ .++... .+|..+..+++|++|++++|.+.+..|..
T Consensus       246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l-~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~  320 (606)
T 3t6q_A          246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCF---SGLQELDL-TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS  320 (606)
T ss_dssp             GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC---TTCSEEEC-TTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC
T ss_pred             hHhchhhcCceeEEEeecCccCccCHHHhccc---cCCCEEec-cCCccC-CCChhhcccccCCEEECccCCcCcCchhh
Confidence            2222222  78999999999988776655543   48999999 555554 78888999999999999999999555544


Q ss_pred             HHhcCCCccEEEccCCCCCCC-CCCCCCCCCccCEEEccCCccccCC--ChhhhhcCCCccEEEccCCcCCCCCccchhc
Q 042884          296 LLENNTKLKTLFLVNDSLAGP-FRLPIHSHKRLRQLDVSNNNFQGHI--PLEIGDILPNLISFNISMNALDGSIPSSFGN  372 (614)
Q Consensus       296 ~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  372 (614)
                       +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..  +..+. .+++|++|++++|.+.+..+..|..
T Consensus       321 -~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~  398 (606)
T 3t6q_A          321 -ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYNEPLSLKTEAFKE  398 (606)
T ss_dssp             -GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT-TCTTCCEEECCSCSCEEECTTTTTT
T ss_pred             -hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc-cCCCCCEEECCCCcCCcCCHHHhcC
Confidence             78999999999999998854 4455889999999999999998443  44444 4899999999999999888999999


Q ss_pred             cccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcCCcc---CCccccCCCcC
Q 042884          373 INLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKLIGH---IPPQIGNLTRI  443 (614)
Q Consensus       373 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L  443 (614)
                      +++|++|++++|.+.+..|...+..+++|++|++++|.+++.      .+++|++|++++|++++.   .+..+..+++|
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L  478 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL  478 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence            999999999999998777777778999999999999998763      368899999999999862   34678999999


Q ss_pred             CEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCC
Q 042884          444 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGN  523 (614)
Q Consensus       444 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n  523 (614)
                      ++|++++|++++..|..|..+++|++|++++|++++..|+.+..++.| +|++++|++++..|..+..+++++.+++++|
T Consensus       479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  557 (606)
T 3t6q_A          479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN  557 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred             cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence            999999999999999999999999999999999999999999999999 9999999999988888899999999999999


Q ss_pred             cCCCCCCC
Q 042884          524 TFLCGLPL  531 (614)
Q Consensus       524 ~~~c~~~~  531 (614)
                      |+.|+|+.
T Consensus       558 ~~~c~c~~  565 (606)
T 3t6q_A          558 PLDCTCSN  565 (606)
T ss_dssp             CEECSGGG
T ss_pred             CccccCCc
Confidence            99999974

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.5e-53  Score=463.42  Aligned_cols=495  Identities=18%  Similarity=0.158  Sum_probs=410.8

Q ss_pred             cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884            6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG   84 (614)
Q Consensus         6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~   84 (614)
                      ..+++|..+.  +++++|++++|.++++    .+ .|.++++|++|++++|.+.+..+..+.++++|+++++++|.+.+.
T Consensus        22 ~l~~ip~~~~--~~l~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~   95 (606)
T 3vq2_A           22 KLSKVPDDIP--SSTKNIDLSFNPLKIL----KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF   95 (606)
T ss_dssp             CCSSCCTTSC--TTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred             CcccCCCCCC--CCcCEEECCCCCcCEe----ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc
Confidence            3567777655  8899999999999987    45 899999999999999999988888899999999999999988765


Q ss_pred             ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccc
Q 042884           85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG  164 (614)
Q Consensus        85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~  164 (614)
                      .|  ..|+++++|++|++++|.+..  ..+..++. +++|++|++++|.+.+  ..+|. .+.++++|++|++++|++++
T Consensus        96 ~p--~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           96 SP--GSFSGLTSLENLVAVETKLAS--LESFPIGQ-LITLKKLNVAHNFIHS--CKLPA-YFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CT--TSSTTCTTCCEEECTTSCCCC--SSSSCCTT-CTTCCEEECCSSCCCC--CCCCG-GGGTCTTCCEEECCSSCCCE
T ss_pred             Ch--hhcCCcccCCEEEccCCcccc--ccccccCC-CCCCCEEeCCCCcccc--eechH-hHhhcCCCCEEEccCCccee
Confidence            45  379999999999999999874  33355666 9999999999999873  12454 89999999999999999998


Q ss_pred             ccCccccCCCCCc----EEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccC-------
Q 042884          165 SLPWCVANMTSLR----ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN-------  233 (614)
Q Consensus       165 ~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~-------  233 (614)
                      ..+..|..+++|+    +|++++|.+. .++...+... +|++|++++|.+.+......+.+++.++.+++..       
T Consensus       168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  245 (606)
T 3vq2_A          168 ITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER  245 (606)
T ss_dssp             ECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             cChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence            8888887776554    8999999998 7777666555 8999999999887544445567777777766633       


Q ss_pred             --------------------------CcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCC
Q 042884          234 --------------------------NELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTK  287 (614)
Q Consensus       234 --------------------------n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~  287 (614)
                                                +.+.+..+.    .....+|+.|++ .++.. ..+| .+..+++|++|++++|.
T Consensus       246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~----~~~l~~L~~L~l-~~~~~-~~l~-~l~~~~~L~~L~l~~n~  318 (606)
T 3vq2_A          246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK----FHCLANVSAMSL-AGVSI-KYLE-DVPKHFKWQSLSIIRCQ  318 (606)
T ss_dssp             CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS----CGGGTTCSEEEE-ESCCC-CCCC-CCCTTCCCSEEEEESCC
T ss_pred             cccccChHHhhhhhhccHhheeccccccccccccc----cccCCCCCEEEe-cCccc-hhhh-hccccccCCEEEccccc
Confidence                                      333333222    223457888888 44444 3455 77888999999999999


Q ss_pred             CCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccC--CChhhhhcCCCccEEEccCCcCCCC
Q 042884          288 MNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH--IPLEIGDILPNLISFNISMNALDGS  365 (614)
Q Consensus       288 i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~~l~~L~~L~L~~n~l~~~  365 (614)
                      + +.+|.  + .+++|++|++++|...+  ...+..+++|+.|++++|.+++.  ++..+.. +++|++|++++|.+++ 
T Consensus       319 l-~~lp~--~-~l~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~-  390 (606)
T 3vq2_A          319 L-KQFPT--L-DLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII-  390 (606)
T ss_dssp             C-SSCCC--C-CCSSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEE-
T ss_pred             C-ccccc--C-CCCccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCcccc-
Confidence            9 58884  4 89999999999996554  33677899999999999999844  2555554 9999999999999885 


Q ss_pred             CccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcCCc-cCCcccc
Q 042884          366 IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKLIG-HIPPQIG  438 (614)
Q Consensus       366 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l~~-~~~~~~~  438 (614)
                      .|..+..+++|++|++++|.+.+..|...+..+++|++|++++|.+++.      .+++|++|++++|++++ ..|..|.
T Consensus       391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  470 (606)
T 3vq2_A          391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA  470 (606)
T ss_dssp             ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence            5588999999999999999999666656778999999999999998763      36789999999999997 4788999


Q ss_pred             CCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccC-CcCc
Q 042884          439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA-TFNE  517 (614)
Q Consensus       439 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~  517 (614)
                      .+++|++|++++|++++..|..|.++++|++|++++|++++..|..|..+++|++|++++|+++ .+|..+..++ +++.
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~  549 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF  549 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred             cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence            9999999999999999999999999999999999999999999999999999999999999999 5666578886 5999


Q ss_pred             ccccCCcCCCCCCCC
Q 042884          518 SSYEGNTFLCGLPLP  532 (614)
Q Consensus       518 ~~~~~n~~~c~~~~~  532 (614)
                      +++++||+.|+|+..
T Consensus       550 l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          550 FNLTNNSVACICEHQ  564 (606)
T ss_dssp             EECCSCCCCCSSTTH
T ss_pred             EEccCCCcccCCccH
Confidence            999999999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.5e-50  Score=444.78  Aligned_cols=486  Identities=18%  Similarity=0.133  Sum_probs=332.7

Q ss_pred             CEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCCCCCEE
Q 042884           21 NTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL  100 (614)
Q Consensus        21 ~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L  100 (614)
                      +.+|.+++.++.+    +..+.  +++++|++++|.+.+..+..+.++++|+++++++|.+.+..|  .+|.++++|++|
T Consensus         7 ~~~~cs~~~L~~i----p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L   78 (680)
T 1ziw_A            7 EVADCSHLKLTQV----PDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP--ELCQKLPMLKVL   78 (680)
T ss_dssp             SEEECCSSCCSSC----CSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT--THHHHCTTCCEE
T ss_pred             CeeECCCCCcccc----ccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH--HHHhcccCcCEE
Confidence            6789999999876    22343  799999999999998888889999999999999998876444  378899999999


Q ss_pred             eCcCcccCCCcchhh-HhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEE
Q 042884          101 NMERARIAPNTSFLQ-IIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRIL  179 (614)
Q Consensus       101 ~l~~n~l~~~~~~~~-~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  179 (614)
                      ++++|.+.   .+|. .+.. +++|++|++++|.+.    .+++..|+++++|++|++++|.+++..|..+.++++|++|
T Consensus        79 ~L~~n~l~---~l~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           79 NLQHNELS---QLSDKTFAF-CTNLTELHLMSNSIQ----KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             ECCSSCCC---CCCTTTTTT-CTTCSEEECCSSCCC----CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             ECCCCccC---ccChhhhcc-CCCCCEEECCCCccC----ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            99999998   5665 4666 999999999999998    5666689999999999999999999889999999999999


Q ss_pred             EcccCCCCCccCCCCC--CCCCCCCEEEcccCcCccccCcccccC---------------------------CCCccEEE
Q 042884          180 DVSSNQLTGSIASSPL--AHLTSIEELHLSDNHFRIPISLEPLFN---------------------------HSRLKIFD  230 (614)
Q Consensus       180 ~L~~n~l~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~---------------------------l~~L~~L~  230 (614)
                      ++++|.+++ ++...+  ..+++|++|++++|.+.+..+ ..+..                           .++|+.|+
T Consensus       151 ~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~  228 (680)
T 1ziw_A          151 LLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS  228 (680)
T ss_dssp             ECCSSCCCC-BCHHHHGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred             EccCCcccc-cCHHHhhccccccccEEECCCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence            999999984 443323  356889999999998874332 22322                           24566666


Q ss_pred             ccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChh---------------
Q 042884          231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW---------------  295 (614)
Q Consensus       231 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~---------------  295 (614)
                      +++|.+.+..+..+.... ..+|++|++ +++...+..|..+..+++|++|++++|.+.+..|..               
T Consensus       229 L~~n~l~~~~~~~~~~l~-~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~  306 (680)
T 1ziw_A          229 LSNSQLSTTSNTTFLGLK-WTNLTMLDL-SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS  306 (680)
T ss_dssp             CTTSCCCEECTTTTGGGG-GSCCCEEEC-TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCCcccccChhHhhccC-cCCCCEEEC-CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence            666666655544443221 123666666 444454445555666666666666666655333322               


Q ss_pred             -----------------HHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCcccc-CCChhhhhc--CCCccEE
Q 042884          296 -----------------LLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQG-HIPLEIGDI--LPNLISF  355 (614)
Q Consensus       296 -----------------~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~--l~~L~~L  355 (614)
                                       .|..+++|++|++++|.+.++.+..|.++++|++|++++|.+.. .++...+..  .++|+.|
T Consensus       307 ~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L  386 (680)
T 1ziw_A          307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL  386 (680)
T ss_dssp             BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEE
T ss_pred             hhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceE
Confidence                             24556666777777777777666667777777777777665421 222222221  2467777


Q ss_pred             EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcC
Q 042884          356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKL  429 (614)
Q Consensus       356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l  429 (614)
                      ++++|++++..|..|..+++|++|++++|.+.+.+|...+.++++|++|++++|++.+.      .+++|+.|++++|.+
T Consensus       387 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l  466 (680)
T 1ziw_A          387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL  466 (680)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence            77777777777788888888888888888887777777777888888888888876542      245566666666655


Q ss_pred             C--ccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCc--------ccccCCCCCCeEeccCC
Q 042884          430 I--GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP--------HQLVELKTLEVFSLAFN  499 (614)
Q Consensus       430 ~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~--------~~l~~l~~L~~L~l~~N  499 (614)
                      .  +..|..|..+++|++|++++|+++++.+..|.++++|++|++++|++++..+        ..|.++++|++|++++|
T Consensus       467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             BCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             cccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence            4  3445555666666666666666665555555666666666666665553311        12445555555555555


Q ss_pred             cCcccCCccccccCCcCcccccCCcCC
Q 042884          500 NLSGEIPEWKAQFATFNESSYEGNTFL  526 (614)
Q Consensus       500 ~l~~~~~~~~~~~~~l~~~~~~~n~~~  526 (614)
                      +++...+..+..+++++.+++++|...
T Consensus       547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~  573 (680)
T 1ziw_A          547 GFDEIPVEVFKDLFELKIIDLGLNNLN  573 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCHHHcccccCcceeECCCCCCC
Confidence            555333334555555555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.6e-50  Score=440.35  Aligned_cols=477  Identities=21%  Similarity=0.186  Sum_probs=401.0

Q ss_pred             CCcc-ccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884            7 GSKL-LQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG   84 (614)
Q Consensus         7 ~~~l-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~   84 (614)
                      .+.+ |..|+++++|++|++++|+++++    .+ .|.++++|++|++++|.+.+..|..+..+++|+++++.+|.+.+.
T Consensus        45 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l  120 (606)
T 3t6q_A           45 LPTIQNTTFSRLINLTFLDLTRCQIYWI----HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI  120 (606)
T ss_dssp             CSEECTTTSTTCTTCSEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred             cCcCChhHhccCccceEEECCCCcccee----ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence            3455 55899999999999999999887    55 799999999999999999988888999999999999999998753


Q ss_pred             ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCC--eEECcCCcc
Q 042884           85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQ--ELYKVNNDL  162 (614)
Q Consensus        85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~--~L~L~~n~i  162 (614)
                      .+  ..+.++++|++|++++|.+.+  .....+.. +++|++|++++|.++    .+++..+..+++|+  .|++++|.+
T Consensus       121 ~~--~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          121 DF--IPLHNQKTLESLYLGSNHISS--IKLPKGFP-TEKLKVLDFQNNAIH----YLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             GG--SCCTTCTTCCEEECCSSCCCC--CCCCTTCC-CTTCCEEECCSSCCC----EECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             Cc--chhccCCcccEEECCCCcccc--cCcccccC-CcccCEEEcccCccc----ccChhhhhhhcccceeEEecCCCcc
Confidence            34  368999999999999999974  22234444 899999999999998    56666899999999  899999999


Q ss_pred             ccccCccccCCCCCcEEEcccCCCC-------------------------CccCCCCCCCCC--CCCEEEcccCcCcccc
Q 042884          163 RGSLPWCVANMTSLRILDVSSNQLT-------------------------GSIASSPLAHLT--SIEELHLSDNHFRIPI  215 (614)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~~l~--~L~~L~L~~n~~~~~~  215 (614)
                      ++..|..|.. .+|++|++++|...                         ..++...+..+.  +|++|++++|.+. .+
T Consensus       192 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~  269 (606)
T 3t6q_A          192 AGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NI  269 (606)
T ss_dssp             CEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SC
T ss_pred             CccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-cc
Confidence            9877777655 58889988877410                         012222233332  7889999999887 45


Q ss_pred             CcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChh
Q 042884          216 SLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW  295 (614)
Q Consensus       216 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~  295 (614)
                      +...+..+++|+.|++++|.+.... ..+.   ...+|++|++ .++...+..|..+..+++|++|++++|.+.+.+|..
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~~lp-~~l~---~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  344 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLSELP-SGLV---GLSTLKKLVL-SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG  344 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCSCCC-SSCC---SCTTCCEEEC-TTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred             CHHHhccccCCCEEeccCCccCCCC-hhhc---ccccCCEEEC-ccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence            5567888999999999999887543 2332   3458999999 677777777788899999999999999998788877


Q ss_pred             HHhcCCCccEEEccCCCCCCCC--CCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCcc-chhc
Q 042884          296 LLENNTKLKTLFLVNDSLAGPF--RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGN  372 (614)
Q Consensus       296 ~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~  372 (614)
                      .+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+..+. .+..
T Consensus       345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (606)
T 3t6q_A          345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQN  423 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred             hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhC
Confidence            7889999999999999998876  67789999999999999999855555444 489999999999999876554 4899


Q ss_pred             cccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc---------cccCCccEEEcCCCcCCccCCccccCCCcC
Q 042884          373 INLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG---------KVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  443 (614)
Q Consensus       373 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~---------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  443 (614)
                      +++|++|++++|.+. ..+...+..+++|++|++++|++++         ..+++|++|++++|++++..|..|..+++|
T Consensus       424 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          424 LHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM  502 (606)
T ss_dssp             CTTCCEEECTTCCCB-TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccCCEEECCCCccC-CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence            999999999999998 4444556789999999999999875         235789999999999999999999999999


Q ss_pred             CEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          444 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       444 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      ++|++++|++++..|..+..+++| .|++++|++++..|..+..+++|+.+++++|++.|.++
T Consensus       503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999999999999 99999999999999999999999999999999998666

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-50  Score=454.68  Aligned_cols=468  Identities=23%  Similarity=0.218  Sum_probs=395.1

Q ss_pred             CCcc-ccccCCCCCCCEEECCCcccCCCCCCCC-c-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccC
Q 042884            7 GSKL-LQSMGSLPSLNTLYLKHNNFTGTATTTT-Q-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVN   83 (614)
Q Consensus         7 ~~~l-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~   83 (614)
                      .+.+ |..|.++++|++|+|++|.+.+.    + + .|.++++|++|+|++|.+.+..|..+.++.+|++|++++|.+.+
T Consensus        36 i~~i~~~~~~~l~~L~~LdLs~n~~~~~----i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  111 (844)
T 3j0a_A           36 IRTVTASSFPFLEQLQLLELGSQYTPLT----IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD  111 (844)
T ss_dssp             CCEECSSSCSSCCSCSEEEECTTCCCCE----ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred             CCccChhHCcccccCeEEeCCCCCCccc----cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence            3444 56899999999999999965433    3 4 79999999999999999998889999999999999999999987


Q ss_pred             CccCCCCCCCCCCCCEEeCcCcccCCCcchh-hHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCC--CCCCeEECcCC
Q 042884           84 GVVRGQGFPHFKSLEHLNMERARIAPNTSFL-QIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSL--MHLQELYKVNN  160 (614)
Q Consensus        84 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l--~~L~~L~L~~n  160 (614)
                      .++....+.++++|++|++++|.+.+  ..+ ..+.. +++|++|++++|.+++   ..+ ..+..+  ++|+.|++++|
T Consensus       112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~-L~~L~~L~Ls~N~i~~---~~~-~~l~~l~~~~L~~L~L~~n  184 (844)
T 3j0a_A          112 AVLKDGYFRNLKALTRLDLSKNQIRS--LYLHPSFGK-LNSLKSIDFSSNQIFL---VCE-HELEPLQGKTLSFFSLAAN  184 (844)
T ss_dssp             CCSTTCCCSSCSSCCEEEEESCCCCC--CCCCGGGGT-CSSCCEEEEESSCCCC---CCS-GGGHHHHHCSSCCCEECCS
T ss_pred             ccccCccccccCCCCEEECCCCcccc--cccchhHhh-CCCCCEEECCCCcCCe---eCH-HHcccccCCccceEECCCC
Confidence            77765679999999999999999975  333 45666 9999999999999985   333 367766  89999999999


Q ss_pred             ccccccCccccCCCC------CcEEEcccCCCCCccCCCC-----------------------------------CCC--
Q 042884          161 DLRGSLPWCVANMTS------LRILDVSSNQLTGSIASSP-----------------------------------LAH--  197 (614)
Q Consensus       161 ~i~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~-----------------------------------~~~--  197 (614)
                      .+.+..|..+..+++      |+.|++++|.+.+.++...                                   |..  
T Consensus       185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~  264 (844)
T 3j0a_A          185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA  264 (844)
T ss_dssp             BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred             ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence            999888887777665      9999999998765444321                                   112  


Q ss_pred             CCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCC
Q 042884          198 LTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHD  277 (614)
Q Consensus       198 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~  277 (614)
                      .++|++|++++|.+.+ +....+..+++|+.|++++|.+.+..+..|..+   .+|++|++ +++...+..|..+..+++
T Consensus       265 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L-s~N~l~~~~~~~~~~l~~  339 (844)
T 3j0a_A          265 RSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGL---DNLQVLNL-SYNLLGELYSSNFYGLPK  339 (844)
T ss_dssp             TSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC---SSCCEEEE-ESCCCSCCCSCSCSSCTT
T ss_pred             cCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCC---CCCCEEEC-CCCCCCccCHHHhcCCCC
Confidence            2689999999999984 444678999999999999999998877666544   48999999 677777778889999999


Q ss_pred             CcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEc
Q 042884          278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI  357 (614)
Q Consensus       278 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L  357 (614)
                      |+.|++++|.+. .++...|..+++|++|++++|.++++.     .+++|+.|++++|.++ .+|..    ..+++.|++
T Consensus       340 L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~l  408 (844)
T 3j0a_A          340 VAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHL  408 (844)
T ss_dssp             CCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC----CTTCCEEEC
T ss_pred             CCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc----ccccceeec
Confidence            999999999998 444445889999999999999998643     3789999999999998 77653    567999999


Q ss_pred             cCCcCCCCC-ccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-----------cccCCccEEEcC
Q 042884          358 SMNALDGSI-PSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-----------KVLSLLSGLDLS  425 (614)
Q Consensus       358 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------~~~~~L~~L~L~  425 (614)
                      ++|++++.. +..+..+++|++|++++|++++..+...+..+++|+.|++++|.+++           ..+++|+.|+|+
T Consensus       409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls  488 (844)
T 3j0a_A          409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN  488 (844)
T ss_dssp             CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred             ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence            999998653 23456899999999999999865555566778999999999999863           235789999999


Q ss_pred             CCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884          426 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI  505 (614)
Q Consensus       426 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  505 (614)
                      +|++++..|..|.++++|++|+|++|+++++++..+.  ++|+.|++++|++++..|+.|   .+|+.+++++|++.|.+
T Consensus       489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICEC  563 (844)
T ss_dssp             HHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred             CCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccc
Confidence            9999999999999999999999999999998888776  899999999999999988776   47999999999999866


Q ss_pred             C
Q 042884          506 P  506 (614)
Q Consensus       506 ~  506 (614)
                      +
T Consensus       564 ~  564 (844)
T 3j0a_A          564 E  564 (844)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.9e-49  Score=427.19  Aligned_cols=497  Identities=18%  Similarity=0.176  Sum_probs=401.7

Q ss_pred             CCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCc
Q 042884            7 GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGV   85 (614)
Q Consensus         7 ~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~   85 (614)
                      .+++|..+.  +++++|++++|.++++    .+ .|..+++|++|++++|.+.+..+..+.++++|+++++.+|.+.+ +
T Consensus        19 l~~ip~~l~--~~l~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~   91 (570)
T 2z63_A           19 FYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L   91 (570)
T ss_dssp             CSSCCSSSC--SSCCEEECCSCCCCEE----CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-E
T ss_pred             ccccCCCcc--ccccEEEccCCccCcc----ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-c
Confidence            456776554  6799999999999877    44 78999999999999999987777888999999999999998764 4


Q ss_pred             cCCCCCCCCCCCCEEeCcCcccCCCcchhh-HhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccc
Q 042884           86 VRGQGFPHFKSLEHLNMERARIAPNTSFLQ-IIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG  164 (614)
Q Consensus        86 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~  164 (614)
                      ++ ..|.++++|++|++++|.+..   ++. .+.. +++|++|++++|.+.+  ..+|. .|+++++|++|++++|++++
T Consensus        92 ~~-~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           92 AL-GAFSGLSSLQKLVAVETNLAS---LENFPIGH-LKTLKELNVAHNLIQS--FKLPE-YFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             CT-TTTTTCTTCCEEECTTSCCCC---STTCSCTT-CTTCCEEECCSSCCCC--CCCCG-GGGGCTTCCEEECTTSCCCE
T ss_pred             CH-hhhcCcccccccccccccccc---CCCccccc-cccccEEecCCCccce--ecChh-hhcccCCCCEEeCcCCccce
Confidence            43 378999999999999998873   443 3555 8999999999998873  11344 78999999999999999998


Q ss_pred             ccCccccCCCCC----cEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccc---
Q 042884          165 SLPWCVANMTSL----RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELN---  237 (614)
Q Consensus       165 ~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~---  237 (614)
                      ..+..+..+++|    +.|++++|.+. .++...+... +|++|++++|..........+..++.++..++....+.   
T Consensus       164 ~~~~~~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~  241 (570)
T 2z63_A          164 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG  241 (570)
T ss_dssp             ECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred             ecHHHccchhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence            878888888888    89999999998 5555556655 79999999885443222234566677766655432221   


Q ss_pred             ---ccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCC
Q 042884          238 ---AEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLA  314 (614)
Q Consensus       238 ---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~  314 (614)
                         ......+... ....++.+++.......+..|..+..+++|+.|++++|.+. .+|.. +..+ +|++|++++|.+.
T Consensus       242 ~l~~~~~~~~~~l-~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~-~~~~-~L~~L~l~~n~~~  317 (570)
T 2z63_A          242 NLEKFDKSALEGL-CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF-SYNF-GWQHLELVNCKFG  317 (570)
T ss_dssp             SCEECCTTTTGGG-GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC-CSCC-CCSEEEEESCBCS
T ss_pred             hhhhcchhhhccc-cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh-hccC-CccEEeeccCccc
Confidence               1111122211 12256677774443556677888889999999999999998 67776 5566 9999999999998


Q ss_pred             CCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCC--ccchhccccCcEEEccCCccCCcCCc
Q 042884          315 GPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSI--PSSFGNINLLKILDLSNNQLTGEIPE  392 (614)
Q Consensus       315 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~  392 (614)
                      .++.   ..+++|+.|++++|.+.+..+.   ..+++|++|++++|.+++..  +..+..+++|++|++++|.+. .+|.
T Consensus       318 ~l~~---~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~  390 (570)
T 2z63_A          318 QFPT---LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS  390 (570)
T ss_dssp             SCCB---CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEE
T ss_pred             ccCc---ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccc
Confidence            5443   4678999999999998866554   34899999999999998654  678899999999999999998 5666


Q ss_pred             hhhccCCCCCEEEccCCccccc-------ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCC-CCCCcCCCCC
Q 042884          393 HLAVGCVYLDFLALSNNSLEGK-------VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT-GLIPSTFSNL  464 (614)
Q Consensus       393 ~~~~~~~~L~~L~l~~n~l~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l  464 (614)
                      . +..+++|++|++++|.+.+.       .+++|++|++++|.+.+..|..|.++++|++|++++|.++ +..|..+..+
T Consensus       391 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l  469 (570)
T 2z63_A          391 N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  469 (570)
T ss_dssp             E-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             c-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence            5 68899999999999988753       3578999999999999889999999999999999999997 5688999999


Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCCC
Q 042884          465 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP  532 (614)
Q Consensus       465 ~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~  532 (614)
                      ++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++++.+++++||+.|+||..
T Consensus       470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            99999999999999888999999999999999999999888888899999999999999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.6e-49  Score=430.35  Aligned_cols=508  Identities=19%  Similarity=0.163  Sum_probs=392.5

Q ss_pred             CCcccc-ccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884            7 GSKLLQ-SMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG   84 (614)
Q Consensus         7 ~~~l~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~   84 (614)
                      .+.+++ .|.++++|++|++++|.++++    .+ .|.++++|++|++++|.+.+..|..+.++++|+++++.+|.+.+.
T Consensus        44 l~~~~~~~~~~l~~L~~L~Ls~n~l~~i----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  119 (606)
T 3vq2_A           44 LKILKSYSFSNFSELQWLDLSRCEIETI----EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL  119 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCS
T ss_pred             cCEeChhhccCCccCcEEeCCCCccccc----CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccc
Confidence            345554 899999999999999999987    45 789999999999999999988899999999999999999998754


Q ss_pred             ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCC----eEECcCC
Q 042884           85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQ----ELYKVNN  160 (614)
Q Consensus        85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~----~L~L~~n  160 (614)
                      .+  ..++++++|++|++++|.+.+ ..+|..+.. +++|++|++++|.++    .+++..+..+++|+    +|++++|
T Consensus       120 ~~--~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~-l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          120 ES--FPIGQLITLKKLNVAHNFIHS-CKLPAYFSN-LTNLVHVDLSYNYIQ----TITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             SS--SCCTTCTTCCEEECCSSCCCC-CCCCGGGGT-CTTCCEEECCSSCCC----EECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cc--cccCCCCCCCEEeCCCCcccc-eechHhHhh-cCCCCEEEccCCcce----ecChhhhhhhhccccccceeeccCC
Confidence            33  369999999999999999873 146888888 999999999999998    45554666666554    8999999


Q ss_pred             ccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEc---------------------------------c
Q 042884          161 DLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHL---------------------------------S  207 (614)
Q Consensus       161 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L---------------------------------~  207 (614)
                      .+++..+..+... +|++|++++|.+.+......+..++.|+.+++                                 .
T Consensus       192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  270 (606)
T 3vq2_A          192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY  270 (606)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred             CcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence            9997666666655 89999999998864333333556666665555                                 4


Q ss_pred             cCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCC
Q 042884          208 DNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTK  287 (614)
Q Consensus       208 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~  287 (614)
                      .|.+.+.++.  +..+++|+.+++++|.+....     ......+|++|++ .++.. +.+|.+  .+++|++|++++|.
T Consensus       271 ~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~-----~l~~~~~L~~L~l-~~n~l-~~lp~~--~l~~L~~L~l~~n~  339 (606)
T 3vq2_A          271 TNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE-----DVPKHFKWQSLSI-IRCQL-KQFPTL--DLPFLKSLTLTMNK  339 (606)
T ss_dssp             CTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC-----CCCTTCCCSEEEE-ESCCC-SSCCCC--CCSSCCEEEEESCS
T ss_pred             cccccccccc--cccCCCCCEEEecCccchhhh-----hccccccCCEEEc-ccccC-cccccC--CCCccceeeccCCc
Confidence            4455544442  778899999999999886543     2334458999999 55555 677744  89999999999996


Q ss_pred             CCCCCChhHHhcCCCccEEEccCCCCCCCC--CCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCC
Q 042884          288 MNGEFPNWLLENNTKLKTLFLVNDSLAGPF--RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGS  365 (614)
Q Consensus       288 i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~  365 (614)
                      ..+.++   +..+++|++|++++|.+.+..  +..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+.+.
T Consensus       340 ~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~l~~n~l~~~  414 (606)
T 3vq2_A          340 GSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG-LEELQHLDFQHSTLKRV  414 (606)
T ss_dssp             SCEECC---CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTT-CTTCCEEECTTSEEEST
T ss_pred             Cccchh---hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccC-CCCCCeeECCCCccCCc
Confidence            654553   568899999999999988763  566788899999999999987 56654444 89999999999999887


Q ss_pred             Cc-cchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc-------ccCCccEEEcCCCcCCccCCccc
Q 042884          366 IP-SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK-------VLSLLSGLDLSCNKLIGHIPPQI  437 (614)
Q Consensus       366 ~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~L~~L~L~~n~l~~~~~~~~  437 (614)
                      .+ ..+..+++|++|++++|.+.+..|. .+..+++|++|++++|++++.       .+++|++|++++|++++..|..|
T Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  493 (606)
T 3vq2_A          415 TEFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF  493 (606)
T ss_dssp             TTTTTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             cChhhhhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence            77 6889999999999999999855554 457899999999999998762       35789999999999999999999


Q ss_pred             cCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC-CCCeEeccCCcCcccCCc-cccccCCc
Q 042884          438 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSLAFNNLSGEIPE-WKAQFATF  515 (614)
Q Consensus       438 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~-~~~~~~~l  515 (614)
                      .++++|++|++++|++++..|..|..+++|++|++++|+++ .+|..+..++ +|++|++++|++.|.++. ++..|-. 
T Consensus       494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~-  571 (606)
T 3vq2_A          494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK-  571 (606)
T ss_dssp             TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT-
T ss_pred             cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH-
Confidence            99999999999999999999999999999999999999999 6777788887 599999999999986663 3333321 


Q ss_pred             CcccccCCcCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 042884          516 NESSYEGNTFLC-GLPLPICRSPATTPEASIGNERDDN  552 (614)
Q Consensus       516 ~~~~~~~n~~~c-~~~~~~c~~~~~~~~~~~~~~~~~~  552 (614)
                            .++... +.....|..|....+....+.+...
T Consensus       572 ------~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~  603 (606)
T 3vq2_A          572 ------EQKQFLVNVEQMTCATPVEMNTSLVLDFNNST  603 (606)
T ss_dssp             ------TSSSSBSSGGGCCCC-----------------
T ss_pred             ------cCcccccCCccceeCCChHhCCCEeeeccccc
Confidence                  111111 1122367777766666665555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.8e-48  Score=420.30  Aligned_cols=475  Identities=18%  Similarity=0.162  Sum_probs=294.3

Q ss_pred             CCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCc
Q 042884            7 GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGV   85 (614)
Q Consensus         7 ~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~   85 (614)
                      .+++|+.+.  ++|++|++++|.++++    .+ .+..+++|++|++++|.+.+..+..+..+++|+++++++|.+.+..
T Consensus        17 l~~ip~~~~--~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   90 (549)
T 2z81_A           17 FTSIPSGLT--AAMKSLDLSFNKITYI----GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS   90 (549)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCEE----CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred             cccccccCC--CCccEEECcCCccCcc----ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence            445555443  5666666666666655    33 5666666666666666666555555555666666666655554332


Q ss_pred             cCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc
Q 042884           86 VRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS  165 (614)
Q Consensus        86 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~  165 (614)
                      +  ..|+++++|++|++++|.+... ..+..+.. +++|++|++++|.+.+   .+++..+.++++|++|++++|++++.
T Consensus        91 ~--~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~-l~~L~~L~L~~n~~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           91 S--SWFGPLSSLKYLNLMGNPYQTL-GVTSLFPN-LTNLQTLRIGNVETFS---EIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             H--HHHTTCTTCCEEECTTCCCSSS-CSSCSCTT-CTTCCEEEEEESSSCC---EECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             H--HHhccCCCCcEEECCCCccccc-chhhhhhc-cCCccEEECCCCcccc---ccCHhhhhcccccCeeeccCCccccc
Confidence            2  1355556666666666655420 12233444 5566666665555332   44444555556666666666666555


Q ss_pred             cCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCcccc--CcccccCCCCccEEEccCCccccccccc
Q 042884          166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPI--SLEPLFNHSRLKIFDAENNELNAEITES  243 (614)
Q Consensus       166 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~  243 (614)
                      .|..+..+++|++|+++.|.+. .+|...+..+++|++|++++|.+.+..  +......+++|+.|++++|.+.+.....
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  242 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE  242 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred             ChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence            5555555666666666655554 444333344555666666665554311  1112233455555555555544322211


Q ss_pred             ccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC--C---hhHHhcCCCccEEEccCCCCCCCCC
Q 042884          244 YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEF--P---NWLLENNTKLKTLFLVNDSLAGPFR  318 (614)
Q Consensus       244 ~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~--~---~~~~~~~~~L~~L~l~~n~i~~~~~  318 (614)
                                              ++..+..+++|+.+++++|.+.+..  +   ...+..+++++.|.+.++.+.....
T Consensus       243 ------------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~  298 (549)
T 2z81_A          243 ------------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL  298 (549)
T ss_dssp             ------------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG
T ss_pred             ------------------------HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh
Confidence                                    1223345667777777777655321  0   0113456677777777776654221


Q ss_pred             C-----CCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCc---cchhccccCcEEEccCCccCCcC
Q 042884          319 L-----PIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIP---SSFGNINLLKILDLSNNQLTGEI  390 (614)
Q Consensus       319 ~-----~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~  390 (614)
                      .     .+...++|+.|++++|.+. .+|..++..+++|++|++++|++++..|   ..++.+++|++|++++|+++ .+
T Consensus       299 ~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~  376 (549)
T 2z81_A          299 FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SM  376 (549)
T ss_dssp             SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CH
T ss_pred             cccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-cc
Confidence            0     0122457888888888876 7777776567888888888888876553   23667788888888888887 44


Q ss_pred             Cc--hhhccCCCCCEEEccCCccccc-----ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCC
Q 042884          391 PE--HLAVGCVYLDFLALSNNSLEGK-----VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN  463 (614)
Q Consensus       391 ~~--~~~~~~~~L~~L~l~~n~l~~~-----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  463 (614)
                      +.  ..+..+++|++|++++|++++.     .+++|++|++++|++++. |..+  .++|++|++++|++++.+    ..
T Consensus       377 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~  449 (549)
T 2z81_A          377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LF  449 (549)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CC
T ss_pred             ccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----cc
Confidence            43  4467788888888888877642     246788888888888743 3333  257888888888888653    56


Q ss_pred             CCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          464 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       464 l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      +++|++|++++|+++ .+|. ...+++|++|++++|++++.+|..+..+++++.+++++|||.|+||
T Consensus       450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            788888888888888 5565 4567888888888888888888778888888888888888888886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.3e-46  Score=407.99  Aligned_cols=514  Identities=18%  Similarity=0.175  Sum_probs=377.5

Q ss_pred             CCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCc
Q 042884            7 GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGV   85 (614)
Q Consensus         7 ~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~   85 (614)
                      .++||+.+.  +++++|||++|+|+++    .+ +|.++++|++|+|++|.+....+.+|.++++|++|++++|.+.+ +
T Consensus        43 l~~vP~~lp--~~~~~LdLs~N~i~~l----~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l  115 (635)
T 4g8a_A           43 FYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L  115 (635)
T ss_dssp             CSSCCSSSC--TTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-E
T ss_pred             cCccCCCCC--cCCCEEEeeCCCCCCC----CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-C
Confidence            456675443  4789999999998877    44 78888999999999998887777788888889999988887653 4


Q ss_pred             cCCCCCCCCCCCCEEeCcCcccCCCcchhhH-hhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccc
Q 042884           86 VRGQGFPHFKSLEHLNMERARIAPNTSFLQI-IGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG  164 (614)
Q Consensus        86 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~  164 (614)
                      |. ..|.++++|++|++++|.++   .++.. +.. +++|++|++++|.++.   ...+..+..+++|++|++++|++++
T Consensus       116 ~~-~~f~~L~~L~~L~Ls~N~l~---~l~~~~~~~-L~~L~~L~Ls~N~l~~---~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          116 AL-GAFSGLSSLQKLVAVETNLA---SLENFPIGH-LKTLKELNVAHNLIQS---FKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CG-GGGTTCTTCCEEECTTSCCC---CSTTCCCTT-CTTCCEEECCSSCCCC---CCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CH-HHhcCCCCCCEEECCCCcCC---CCChhhhhc-CcccCeeccccCcccc---CCCchhhccchhhhhhcccCccccc
Confidence            44 36888889999999998887   44443 555 8889999998888864   2223367888889999999998887


Q ss_pred             ccCccccCCCC----CcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccccc-
Q 042884          165 SLPWCVANMTS----LRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAE-  239 (614)
Q Consensus       165 ~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-  239 (614)
                      ..+..|..+.+    ...++++.|.+. .++...+ ....++.+++.+|.....+....+..+..++...+..+..... 
T Consensus       188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~  265 (635)
T 4g8a_A          188 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG  265 (635)
T ss_dssp             ECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             cccccccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence            77777765543    346888888887 5665534 3445677888877655444334455666666555533221110 


Q ss_pred             -----ccccccC------------------------CCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC
Q 042884          240 -----ITESYSL------------------------TTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG  290 (614)
Q Consensus       240 -----~~~~~~~------------------------~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~  290 (614)
                           ....+..                        .....+++.+.+. .+...  ....+.....++.|++++|.+. 
T Consensus       266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~--~~~~~~~~~~L~~L~l~~~~~~-  341 (635)
T 4g8a_A          266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV-SVTIE--RVKDFSYNFGWQHLELVNCKFG-  341 (635)
T ss_dssp             CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE-SCEEE--ECGGGGSCCCCSEEEEESCEES-
T ss_pred             ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc-ccccc--cccccccchhhhhhhccccccc-
Confidence                 0000000                        0001122222221 11000  0112334556777777777665 


Q ss_pred             CCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCcccc--CCChhhhhcCCCccEEEccCCcCCCCCcc
Q 042884          291 EFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQG--HIPLEIGDILPNLISFNISMNALDGSIPS  368 (614)
Q Consensus       291 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  368 (614)
                      .++.   ..++.|+.+++..|.+...  .....+++|+.+++++|.+..  ..+...+. +.+|+.+++..+.+.. .+.
T Consensus       342 ~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~~~~~~~~~-~~~  414 (635)
T 4g8a_A          342 QFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVIT-MSS  414 (635)
T ss_dssp             SCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHS-CSCCCEEECCSCSEEE-ECS
T ss_pred             CcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhh-hhhhhhhhcccccccc-ccc
Confidence            3332   2456677777777766653  334568899999999998752  34444444 7899999999988764 455


Q ss_pred             chhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc------cccCCccEEEcCCCcCC-ccCCccccCCC
Q 042884          369 SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLI-GHIPPQIGNLT  441 (614)
Q Consensus       369 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~L~~L~L~~n~l~-~~~~~~~~~l~  441 (614)
                      .+..+++|+.++++.++.....+...|..+.+++.++++.|.+.+      ..++.++.|++++|.+. +..|..|..++
T Consensus       415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence            688899999999999988877787888999999999999999875      34678999999999854 46788999999


Q ss_pred             cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc-CCcCcccc
Q 042884          442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF-ATFNESSY  520 (614)
Q Consensus       442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~~~~  520 (614)
                      +|++|+|++|++++++|..|.++++|++|+|++|+|++..|..|..+++|++|++++|++++..|..+..+ ++++.+++
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999888887 68999999


Q ss_pred             cCCcCCCCCCCC-------------------CCCCCCCCCCCCCCCC
Q 042884          521 EGNTFLCGLPLP-------------------ICRSPATTPEASIGNE  548 (614)
Q Consensus       521 ~~n~~~c~~~~~-------------------~c~~~~~~~~~~~~~~  548 (614)
                      ++|||.|+|...                   .|..|....|.++...
T Consensus       575 ~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~  621 (635)
T 4g8a_A          575 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL  621 (635)
T ss_dssp             TTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGC
T ss_pred             eCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeee
Confidence            999999999641                   4888887777666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.7e-45  Score=395.76  Aligned_cols=474  Identities=19%  Similarity=0.199  Sum_probs=380.9

Q ss_pred             CCccc-cccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884            7 GSKLL-QSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG   84 (614)
Q Consensus         7 ~~~l~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~   84 (614)
                      .+.++ .+|..+++|++|++++|+++++    .+ .|.++++|++|++++|.+....+..+.++.+|+++++.+|.+.+ 
T Consensus        40 l~~~~~~~~~~l~~L~~L~Ls~n~i~~i----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-  114 (570)
T 2z63_A           40 LRHLGSYSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-  114 (570)
T ss_dssp             CCEECTTTTTTCSSCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-
T ss_pred             cCccChhHhhCCCCceEEECCCCcCCcc----CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-
Confidence            34454 3789999999999999999887    44 78999999999999999988878899999999999999998764 


Q ss_pred             ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC----CeEECcCC
Q 042884           85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL----QELYKVNN  160 (614)
Q Consensus        85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L----~~L~L~~n  160 (614)
                      ++. ..++++++|++|++++|.+.. ..+|..+.. +++|++|++++|.++    .+++..++.+++|    +.|++++|
T Consensus       115 l~~-~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~-l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          115 LEN-FPIGHLKTLKELNVAHNLIQS-FKLPEYFSN-LTNLEHLDLSSNKIQ----SIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             STT-CSCTTCTTCCEEECCSSCCCC-CCCCGGGGG-CTTCCEEECTTSCCC----EECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCC-ccccccccccEEecCCCccce-ecChhhhcc-cCCCCEEeCcCCccc----eecHHHccchhccchhhhhcccCCC
Confidence            443 258999999999999999873 136788888 999999999999998    5665578888888    89999999


Q ss_pred             ccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCcc-----ccCcccccCCCC--ccEEEccC
Q 042884          161 DLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI-----PISLEPLFNHSR--LKIFDAEN  233 (614)
Q Consensus       161 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-----~~~~~~~~~l~~--L~~L~l~~  233 (614)
                      .+++..|..|..+ +|+.|++++|..........+..++.++.+.+....+..     .++...+..+.+  ++.+++++
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            9998888888776 899999999854422111235566666665554332210     122222333332  45555555


Q ss_pred             C-cccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCC
Q 042884          234 N-ELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS  312 (614)
Q Consensus       234 n-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~  312 (614)
                      + .+.+..++.+.   ...+|+.|++ .++... .+|.++..+ +|+.|++++|.+. .+|.   ..+++|++|++++|.
T Consensus       267 ~~~~~~~~~~~~~---~l~~L~~L~l-~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          267 LDYYLDDIIDLFN---CLTNVSSFSL-VSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNK  336 (570)
T ss_dssp             TTEEESCSTTTTG---GGTTCSEEEE-ESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCB
T ss_pred             chhhhhhchhhhc---CcCcccEEEe-cCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCc
Confidence            5 34333333332   2347888888 444443 578888888 9999999999998 7775   478999999999999


Q ss_pred             CCCCCCCCCCCCCccCEEEccCCccccCC--ChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcC
Q 042884          313 LAGPFRLPIHSHKRLRQLDVSNNNFQGHI--PLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEI  390 (614)
Q Consensus       313 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  390 (614)
                      +.+..+.  ..+++|+.|++++|.+++..  +..+.. +++|++|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus       337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred             ccccccc--ccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence            8875544  67899999999999997432  445544 89999999999999865554 999999999999999998666


Q ss_pred             CchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcCC-ccCCccccCCCcCCEEECcCCcCCCCCCcCCCC
Q 042884          391 PEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKLI-GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN  463 (614)
Q Consensus       391 ~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  463 (614)
                      |...+..+++|++|++++|.+.+.      .+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..|..
T Consensus       413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  492 (570)
T 2z63_A          413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  492 (570)
T ss_dssp             TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence            667778999999999999998763      3688999999999998 578899999999999999999999999999999


Q ss_pred             CCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCc
Q 042884          464 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE  507 (614)
Q Consensus       464 l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  507 (614)
                      +++|++|++++|++++..|..|..+++|+.|++++|+++|.+|.
T Consensus       493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999999998888899999999999999999998875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-45  Score=395.51  Aligned_cols=452  Identities=16%  Similarity=0.140  Sum_probs=295.6

Q ss_pred             cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884            6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG   84 (614)
Q Consensus         6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~   84 (614)
                      ..+.+|+.+.  ++|++|++++|.++++    .+ .+..+++|++|++++|.+.+..|..+.++++|+++++++|.+. .
T Consensus        11 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~   83 (520)
T 2z7x_B           11 GLIHVPKDLS--QKTTILNISQNYISEL----WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-K   83 (520)
T ss_dssp             CCSSCCCSCC--TTCSEEECCSSCCCCC----CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-E
T ss_pred             Cccccccccc--ccccEEECCCCccccc----ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-e
Confidence            3456777665  7888888888888876    54 7888888888888888888777888888888888888888776 5


Q ss_pred             ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC--CeEECcCCcc
Q 042884           85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL--QELYKVNNDL  162 (614)
Q Consensus        85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L--~~L~L~~n~i  162 (614)
                      +|..    .+++|++|++++|.+.+ ..+|..++. +++|++|++++|.+.+       ..+..+++|  +.|++++|.+
T Consensus        84 lp~~----~l~~L~~L~L~~N~l~~-~~~p~~~~~-l~~L~~L~L~~n~l~~-------~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           84 ISCH----PTVNLKHLDLSFNAFDA-LPICKEFGN-MSQLKFLGLSTTHLEK-------SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             EECC----CCCCCSEEECCSSCCSS-CCCCGGGGG-CTTCCEEEEEESSCCG-------GGGGGGTTSCEEEEEEEECTT
T ss_pred             cCcc----ccCCccEEeccCCcccc-ccchhhhcc-CCcceEEEecCcccch-------hhccccccceeeEEEeecccc
Confidence            6642    68888888888888863 124677777 8888888888887763       256667777  8888888888


Q ss_pred             --ccccCccccCCC-CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCc-------CccccCcccccCCCCccEEEcc
Q 042884          163 --RGSLPWCVANMT-SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNH-------FRIPISLEPLFNHSRLKIFDAE  232 (614)
Q Consensus       163 --~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~~l~~L~~L~l~  232 (614)
                        .+..|..+..+. +...+++++|.+.+.++...+..+++|+.|++++|.       +.+.++  .+..+++|+.|+++
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~  228 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLN  228 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhcccc
Confidence              777777777765 344677788888777777778888888888888886       444443  57788888888888


Q ss_pred             CCcccccccccccCCCCCccceeeeccCCCCCCCCCCccc-----cCCCCCcEEEccCCCCCCCCChhHHhcC---CCcc
Q 042884          233 NNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFL-----YHQHDLEYVDLSHTKMNGEFPNWLLENN---TKLK  304 (614)
Q Consensus       233 ~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~-----~~l~~L~~L~Ls~n~i~~~~~~~~~~~~---~~L~  304 (614)
                      +|.+.+.....+.......+|++|++ .++...+.+|..+     ..+++|+.+++++|.+  .+|...+..+   .+|+
T Consensus       229 ~~~l~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~  305 (520)
T 2z7x_B          229 NIETTWNSFIRILQLVWHTTVWYFSI-SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK  305 (520)
T ss_dssp             EEEEEHHHHHHHHHHHHTSSCSEEEE-EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred             ccccCHHHHHHHHHHhhhCcccEEEe-ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence            88776532221111111125666666 4444444555555     5666666666666666  4442212222   4566


Q ss_pred             EEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCC--CCccchhccccCcEEEcc
Q 042884          305 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG--SIPSSFGNINLLKILDLS  382 (614)
Q Consensus       305 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~  382 (614)
                      .|++++|.+.....  +..+++|++|++++|.+++.+|..+.. +++|++|++++|++++  ..|..+..+++|++|+++
T Consensus       306 ~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          306 NFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             EEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             EEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence            66666666554221  145566666666666666445544433 5666666666666664  334556666666666666


Q ss_pred             CCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCC
Q 042884          383 NNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS  462 (614)
Q Consensus       383 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  462 (614)
                      +|.+++.+|...+..+++                  |++|++++|++++..|..+.  ++|++|++++|+++ .+|..+.
T Consensus       383 ~N~l~~~l~~~~~~~l~~------------------L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~  441 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKS------------------LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV  441 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTT------------------CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred             CCcCCcccccchhccCcc------------------CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence            666654355544433333                  44444444444444444332  56777777777777 4444455


Q ss_pred             CCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       463 ~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      .+++|++|++++|+++.+.+..|..+++|++|++++|+++|.++
T Consensus       442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            77777777777777774333336777777777777777776544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=389.14  Aligned_cols=460  Identities=19%  Similarity=0.139  Sum_probs=365.8

Q ss_pred             CEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCCCCCEE
Q 042884           21 NTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL  100 (614)
Q Consensus        21 ~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L  100 (614)
                      ++||+++|.++.+    +..+.  ++|++|++++|.+.+..+..+.++++|+++++++|.+.+..|  ..|.++++|++|
T Consensus         3 ~~l~ls~n~l~~i----p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIHV----PKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI--SVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSSC----CCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG--GGGTTCTTCCEE
T ss_pred             ceEecCCCCcccc----ccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh--HHhhcccCCCEE
Confidence            6899999999976    33444  899999999999998888899999999999999999876445  378999999999


Q ss_pred             eCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCC--cE
Q 042884          101 NMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSL--RI  178 (614)
Q Consensus       101 ~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~  178 (614)
                      ++++|.+.   .+|..  . +++|++|++++|.+++  ..+|. .|+++++|++|++++|.+++   ..+..+++|  ++
T Consensus        75 ~Ls~N~l~---~lp~~--~-l~~L~~L~L~~N~l~~--~~~p~-~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~  142 (520)
T 2z7x_B           75 DLSHNKLV---KISCH--P-TVNLKHLDLSFNAFDA--LPICK-EFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISK  142 (520)
T ss_dssp             ECCSSCCC---EEECC--C-CCCCSEEECCSSCCSS--CCCCG-GGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEE
T ss_pred             ecCCCcee---ecCcc--c-cCCccEEeccCCcccc--ccchh-hhccCCcceEEEecCcccch---hhccccccceeeE
Confidence            99999987   67766  4 9999999999999873  11334 89999999999999999985   457777888  99


Q ss_pred             EEcccCCC--CCccCCCCCCCCC-CCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884          179 LDVSSNQL--TGSIASSPLAHLT-SIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY  255 (614)
Q Consensus       179 L~L~~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  255 (614)
                      |++++|.+  .+..|.. +..+. +...+++++|.+.+.++...+..+++|+.+++++|.-..... .            
T Consensus       143 L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~------------  208 (520)
T 2z7x_B          143 VLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-Y------------  208 (520)
T ss_dssp             EEEEECTTTTSSCCTTT-TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-H------------
T ss_pred             EEeeccccccccccccc-ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-e------------
Confidence            99999998  6555543 55544 234678888888777777778889999999998875110000 0            


Q ss_pred             eeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHh--cCCCccEEEccCCCCCCCCCCCC-----CCCCccC
Q 042884          256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLE--NNTKLKTLFLVNDSLAGPFRLPI-----HSHKRLR  328 (614)
Q Consensus       256 L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~  328 (614)
                              ..+.+ ..+..+++|+.|++++|.+.+..+..+..  ..++|++|++++|.+.+..+..+     ..+++|+
T Consensus       209 --------~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~  279 (520)
T 2z7x_B          209 --------FLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS  279 (520)
T ss_dssp             --------HHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEE
T ss_pred             --------eecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeE
Confidence                    00111 24567888999999988877543322221  24689999999999987677766     8899999


Q ss_pred             EEEccCCccccCCC-hhhhhc--CCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEE
Q 042884          329 QLDVSNNNFQGHIP-LEIGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLA  405 (614)
Q Consensus       329 ~L~l~~n~i~~~~~-~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  405 (614)
                      .+++++|.+  .+| ..++..  .++|+.|++++|.+....  .+..+++|++|++++|++++.+|..+ ..+++|++|+
T Consensus       280 ~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~  354 (520)
T 2z7x_B          280 IHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLI  354 (520)
T ss_dssp             EEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEE
T ss_pred             eccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh-ccCCCCCEEE
Confidence            999999998  566 444431  267999999999887432  12678899999999999986667655 7899999999


Q ss_pred             ccCCcccc--------cccCCccEEEcCCCcCCccCC-ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCc
Q 042884          406 LSNNSLEG--------KVLSLLSGLDLSCNKLIGHIP-PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK  476 (614)
Q Consensus       406 l~~n~l~~--------~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~  476 (614)
                      +++|++++        ..+++|++|++++|++++.+| ..+..+++|++|++++|++++..|..+.  ++|+.|++++|+
T Consensus       355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~  432 (520)
T 2z7x_B          355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK  432 (520)
T ss_dssp             CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred             ccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence            99999985        246899999999999998455 4588999999999999999887777664  799999999999


Q ss_pred             CCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884          477 LNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       477 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      ++ .+|..+..+++|++|++++|+++...+..+..+++++.+++++||+.|+|+.
T Consensus       433 l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            99 7788777999999999999999954444488899999999999999999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.4e-44  Score=395.77  Aligned_cols=439  Identities=16%  Similarity=0.209  Sum_probs=266.2

Q ss_pred             CCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCC------Cc------cchHHHhhccCCcEEeccCccccCC
Q 042884           18 PSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSL------HI------SLLQSIASLFPSLKNLSMSYCEVNG   84 (614)
Q Consensus        18 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~------~~------~~~~~~~~l~~l~~l~l~~~~~~~~   84 (614)
                      .+++.|+|++|.+++.    +| +++.+++|++|+|++|.+      .+      .+|...  +..++ +++..+...+.
T Consensus        81 ~~V~~L~L~~~~l~g~----lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~  153 (636)
T 4eco_A           81 GRVTGLSLEGFGASGR----VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYD  153 (636)
T ss_dssp             CCEEEEECTTSCCEEE----ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCC
T ss_pred             CCEEEEEecCcccCCc----CChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccC
Confidence            4688888888888876    55 888888888888888854      11      122211  11122 22222222222


Q ss_pred             ccCCC-----------------CCCCCCCCCEEeCc--CcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCC-----
Q 042884           85 VVRGQ-----------------GFPHFKSLEHLNME--RARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSR-----  140 (614)
Q Consensus        85 ~~~~~-----------------~~~~l~~L~~L~l~--~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~-----  140 (614)
                      .+...                 .......++.+.+.  .|.++   .+|+.+++ +++|++|++++|.+++   .     
T Consensus       154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~---~ip~~l~~-l~~L~~L~Ls~n~l~~---~~~~~~  226 (636)
T 4eco_A          154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT---FVSKAVMR-LTKLRQFYMGNSPFVA---ENICEA  226 (636)
T ss_dssp             GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE---EECGGGGG-CTTCCEEEEESCCCCG---GGBSSS
T ss_pred             chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCc---cCCHHHhc-ccCCCEEECcCCcccc---cccccc
Confidence            11100                 00011112222221  23443   35555555 6666666666666653   2     


Q ss_pred             ------------cCchhhc--CCCCCCeEECcCCccccccCccccCCCCCcEEEcccCC-CCC-ccCCCCCCCC------
Q 042884          141 ------------ILDRGLC--SLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQ-LTG-SIASSPLAHL------  198 (614)
Q Consensus       141 ------------i~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~l------  198 (614)
                                  +|+ .++  ++++|++|++++|++.+.+|..|.++++|++|++++|+ ++| .+|.. +..+      
T Consensus       227 ~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l  304 (636)
T 4eco_A          227 WENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVG  304 (636)
T ss_dssp             CSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGG
T ss_pred             ccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccC
Confidence                        444 555  66666666666666666666666666666666666665 554 45543 3333      


Q ss_pred             CCCCEEEcccCcCccccCc-ccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCC
Q 042884          199 TSIEELHLSDNHFRIPISL-EPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHD  277 (614)
Q Consensus       199 ~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~  277 (614)
                      ++|++|++++|.++ .++. ..+..+++|+.|++++|.+.+..+ .+.   ...+|++|++ +++... .+|..+..+++
T Consensus       305 ~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~---~l~~L~~L~L-~~N~l~-~lp~~l~~l~~  377 (636)
T 4eco_A          305 EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG---SEIKLASLNL-AYNQIT-EIPANFCGFTE  377 (636)
T ss_dssp             GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE---EEEEESEEEC-CSSEEE-ECCTTSEEECT
T ss_pred             CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC---CCCCCCEEEC-CCCccc-cccHhhhhhcc
Confidence            66666666666665 4442 145566666666666666553333 221   1124444444 222222 44555666777


Q ss_pred             -CcEEEccCCCCCCCCChhHHhcC--CCccEEEccCCCCCCCCCCCCC-------CCCccCEEEccCCccccCCChhhhh
Q 042884          278 -LEYVDLSHTKMNGEFPNWLLENN--TKLKTLFLVNDSLAGPFRLPIH-------SHKRLRQLDVSNNNFQGHIPLEIGD  347 (614)
Q Consensus       278 -L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~~-------~l~~L~~L~l~~n~i~~~~~~~~~~  347 (614)
                       |++|++++|.+. .+|.. +...  ++|++|++++|.+.+..+..+.       .+++|+.|++++|.++ .+|..++.
T Consensus       378 ~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~  454 (636)
T 4eco_A          378 QVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFS  454 (636)
T ss_dssp             TCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHH
T ss_pred             cCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHc
Confidence             777777777777 66654 3333  3677777777777776666665       5667777777777776 67776666


Q ss_pred             cCCCccEEEccCCcCCCCCccchhcc-------ccCcEEEccCCccCCcCCchhh-ccCCCCCEEEccCCcccccccCCc
Q 042884          348 ILPNLISFNISMNALDGSIPSSFGNI-------NLLKILDLSNNQLTGEIPEHLA-VGCVYLDFLALSNNSLEGKVLSLL  419 (614)
Q Consensus       348 ~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~L  419 (614)
                      .+++|++|++++|+++...+..+...       ++|++|++++|+++ .+|..++ ..                  +++|
T Consensus       455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~------------------l~~L  515 (636)
T 4eco_A          455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT------------------LPYL  515 (636)
T ss_dssp             TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT------------------CTTC
T ss_pred             cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc------------------CCCc
Confidence            67777777777777774333333333       27777777777776 6666553 23                  4455


Q ss_pred             cEEEcCCCcCCccCCccccCCCcCCEEEC------cCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCe
Q 042884          420 SGLDLSCNKLIGHIPPQIGNLTRIQTLNL------SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV  493 (614)
Q Consensus       420 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~  493 (614)
                      +.|+|++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|++++|++. .+|..+.  ++|+.
T Consensus       516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~  591 (636)
T 4eco_A          516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISV  591 (636)
T ss_dssp             CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCE
T ss_pred             CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCE
Confidence            566666666665 6777888888888888      457778888888888888999999999884 6777655  78889


Q ss_pred             EeccCCcCcccC
Q 042884          494 FSLAFNNLSGEI  505 (614)
Q Consensus       494 L~l~~N~l~~~~  505 (614)
                      |++++|++.+..
T Consensus       592 L~Ls~N~l~~~~  603 (636)
T 4eco_A          592 LDIKDNPNISID  603 (636)
T ss_dssp             EECCSCTTCEEE
T ss_pred             EECcCCCCcccc
Confidence            999999887543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-43  Score=384.15  Aligned_cols=455  Identities=18%  Similarity=0.132  Sum_probs=330.8

Q ss_pred             Ccc-ccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccC-C
Q 042884            8 SKL-LQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVN-G   84 (614)
Q Consensus         8 ~~l-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~-~   84 (614)
                      +.+ |..|.++++|++|++++|+++++    .+ .|..+++|++|++++|.+.+..+..+..+++|+++++++|.+.+ .
T Consensus        39 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  114 (549)
T 2z81_A           39 TYIGHGDLRACANLQVLILKSSRINTI----EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG  114 (549)
T ss_dssp             CEECSSTTSSCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred             CccChhhhhcCCcccEEECCCCCcCcc----ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence            344 46899999999999999999987    54 79999999999999999998888889999999999999998865 2


Q ss_pred             ccCCCCCCCCCCCCEEeCcCcccCCCcchh-hHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccc
Q 042884           85 VVRGQGFPHFKSLEHLNMERARIAPNTSFL-QIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLR  163 (614)
Q Consensus        85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~  163 (614)
                      .|  ..++++++|++|++++|.+.+  .++ ..+.. +++|++|++++|.+++   ..+. .+..+++|++|++++|.+.
T Consensus       115 ~~--~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~-l~~L~~L~L~~n~l~~---~~~~-~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          115 VT--SLFPNLTNLQTLRIGNVETFS--EIRRIDFAG-LTSLNELEIKALSLRN---YQSQ-SLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             SS--CSCTTCTTCCEEEEEESSSCC--EECTTTTTT-CCEEEEEEEEETTCCE---ECTT-TTTTCSEEEEEEEECSBST
T ss_pred             hh--hhhhccCCccEEECCCCcccc--ccCHhhhhc-ccccCeeeccCCcccc---cChh-hhhccccCceEecccCccc
Confidence            33  379999999999999998544  565 45666 9999999999999985   4444 8999999999999999987


Q ss_pred             cccCccccCCCCCcEEEcccCCCCCcc--CCCCCCCCCCCCEEEcccCcCccccCc---ccccCCCCccEEEccCCcccc
Q 042884          164 GSLPWCVANMTSLRILDVSSNQLTGSI--ASSPLAHLTSIEELHLSDNHFRIPISL---EPLFNHSRLKIFDAENNELNA  238 (614)
Q Consensus       164 ~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~~~~  238 (614)
                      ...+..+..+++|++|++++|++.+..  +......+++|+.|++++|.+.+..+.   ..+..+++|+.+++++|.+.+
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~  265 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG  265 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred             ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence            443333467999999999999998421  233346789999999999988743221   234667899999999998765


Q ss_pred             cccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-----CChhHHhcCCCccEEEccCCCC
Q 042884          239 EITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGE-----FPNWLLENNTKLKTLFLVNDSL  313 (614)
Q Consensus       239 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~~~~~L~~L~l~~n~i  313 (614)
                      ...-..                      .....+..+++|+.|++.++.+...     ++. ++...++|++|++++|.+
T Consensus       266 ~~~~~~----------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l  322 (549)
T 2z81_A          266 LGDFNP----------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLST-VYSLLEKVKRITVENSKV  322 (549)
T ss_dssp             CSCCCC----------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH-HHHHSTTCCEEEEESSCC
T ss_pred             cccccc----------------------cchhhhhhhcccccccccccccchhhhcccchh-hhhhcccceEEEeccCcc
Confidence            421100                      0011223445566666666554421     111 133445666666666666


Q ss_pred             CCCCCCCCCCCCccCEEEccCCccccCCChh--hhhcCCCccEEEccCCcCCCCCc--cchhccccCcEEEccCCccCCc
Q 042884          314 AGPFRLPIHSHKRLRQLDVSNNNFQGHIPLE--IGDILPNLISFNISMNALDGSIP--SSFGNINLLKILDLSNNQLTGE  389 (614)
Q Consensus       314 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~  389 (614)
                      ..++...+..+++|+.|++++|.+++.+|..  ....+++|++|++++|++++..+  ..+..+++|++|++++|+++ .
T Consensus       323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  401 (549)
T 2z81_A          323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-P  401 (549)
T ss_dssp             CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-C
T ss_pred             ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-c
Confidence            5443333345666666666666665444322  12235666666666666664432  34566666666666666666 5


Q ss_pred             CCchhhccCCCCCEEEccCCcccc---cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCC
Q 042884          390 IPEHLAVGCVYLDFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH  466 (614)
Q Consensus       390 ~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  466 (614)
                      +|..+ ..+++|++|++++|++++   ..+++|++|++++|++++..    ..+++|++|++++|+++.+ |. ...+++
T Consensus       402 lp~~~-~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~  474 (549)
T 2z81_A          402 MPDSC-QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PD-ASLFPV  474 (549)
T ss_dssp             CCSCC-CCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-CC-GGGCTT
T ss_pred             CChhh-cccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcC-CC-cccCcc
Confidence            55543 456666666666666653   23568888999999888643    5789999999999999954 44 467899


Q ss_pred             CCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          467 IESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       467 L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      |++|++++|++++..|+.+..+++|+.|++++|+++|.+|
T Consensus       475 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999999999988889999999999999999998877

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-43  Score=393.06  Aligned_cols=387  Identities=18%  Similarity=0.222  Sum_probs=265.4

Q ss_pred             cccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCC--------------CcCchhhc--CCCCCCeEECcCCccccccCc
Q 042884          105 ARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSS--------------RILDRGLC--SLMHLQELYKVNNDLRGSLPW  168 (614)
Q Consensus       105 n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~--------------~i~~~~~~--~l~~L~~L~L~~n~i~~~~~~  168 (614)
                      |.++   .+|..++. +++|++|+|++|.+++...              .+|+ .++  ++++|++|++++|++.+.+|.
T Consensus       435 N~L~---~IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~  509 (876)
T 4ecn_A          435 NRIT---FISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPD  509 (876)
T ss_dssp             CEEE---EECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCG
T ss_pred             Cccc---chhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChH
Confidence            5555   47777777 8888888888888774100              0565 555  888888888888888888888


Q ss_pred             cccCCCCCcEEEcccCC-CCC-ccCCC------CCCCCCCCCEEEcccCcCccccCc-ccccCCCCccEEEccCCccccc
Q 042884          169 CVANMTSLRILDVSSNQ-LTG-SIASS------PLAHLTSIEELHLSDNHFRIPISL-EPLFNHSRLKIFDAENNELNAE  239 (614)
Q Consensus       169 ~~~~l~~L~~L~L~~n~-l~~-~~~~~------~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~  239 (614)
                      .|.++++|+.|++++|+ +++ .+|..      .+..+++|++|++++|.+. .+|. ..+..+++|+.|++++|.+.. 
T Consensus       510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-  587 (876)
T 4ecn_A          510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-  587 (876)
T ss_dssp             GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-
T ss_pred             HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-
Confidence            88888888888888887 776 56642      2345568888888888887 6663 257788888888888887762 


Q ss_pred             ccccccCCCCCccceeeeccCCCCCCCCCCccccCCCC-CcEEEccCCCCCCCCChhHHhcCC--CccEEEccCCCCCCC
Q 042884          240 ITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHD-LEYVDLSHTKMNGEFPNWLLENNT--KLKTLFLVNDSLAGP  316 (614)
Q Consensus       240 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~~~~--~L~~L~l~~n~i~~~  316 (614)
                      .+ .+   ....+|+.|++ +++.+. .+|..+..+++ |+.|++++|.+. .+|.. +...+  +|+.|++++|.+.+.
T Consensus       588 lp-~~---~~L~~L~~L~L-s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          588 LE-AF---GTNVKLTDLKL-DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             CC-CC---CTTSEESEEEC-CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCSSCTTTT
T ss_pred             ch-hh---cCCCcceEEEC-cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcCCcCCCc
Confidence            22 22   22235555555 333333 55666666666 777777777766 55543 33333  367777777766654


Q ss_pred             CCCC---CC--CCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchh-------ccccCcEEEccCC
Q 042884          317 FRLP---IH--SHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG-------NINLLKILDLSNN  384 (614)
Q Consensus       317 ~~~~---~~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~l~~n  384 (614)
                      .+..   +.  .+++|+.|++++|.++ .+|..++..+++|+.|+|++|+++...+..+.       ++++|+.|++++|
T Consensus       660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N  738 (876)
T 4ecn_A          660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN  738 (876)
T ss_dssp             SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred             cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC
Confidence            3321   11  2336667777777766 66666665566677777777766633222222       2236677777777


Q ss_pred             ccCCcCCchhh-ccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcC------CcCCCCC
Q 042884          385 QLTGEIPEHLA-VGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH------NNLTGLI  457 (614)
Q Consensus       385 ~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~  457 (614)
                      +++ .+|..++ ..                  +++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+
T Consensus       739 ~L~-~lp~~l~~~~------------------l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i  798 (876)
T 4ecn_A          739 KLT-SLSDDFRATT------------------LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW  798 (876)
T ss_dssp             CCC-CCCGGGSTTT------------------CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred             CCc-cchHHhhhcc------------------CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccC
Confidence            666 5665543 12                  4566677777777775 677888999999999976      7888899


Q ss_pred             CcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCC--CCC
Q 042884          458 PSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC--GLP  530 (614)
Q Consensus       458 ~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c--~~~  530 (614)
                      |..+..+++|+.|++++|++ +.+|..+.  ++|+.|+|++|++....+..+..........+.+|++.+  +||
T Consensus       799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          799 PTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             CTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             hHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence            99999999999999999999 57887765  699999999999987766666666666677777777665  665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-43  Score=388.35  Aligned_cols=435  Identities=15%  Similarity=0.198  Sum_probs=336.3

Q ss_pred             CCcEEeccCccccCCccCCCCCCCCCCCCEEeCcCcccC------CC----cchhhHhhhcCCCcCEEeccCCcCCCCCC
Q 042884           70 PSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA------PN----TSFLQIIGESTPSLKYLSLSDFTLSTNSS  139 (614)
Q Consensus        70 ~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~------~~----~~~~~~l~~~l~~L~~L~L~~n~l~~~~~  139 (614)
                      +.+.+++.++.+.+.+|.  .++++++|++|++++|.+.      +.    ..+|...   +..|+ ++++.+.+.+   
T Consensus        82 ~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~---  152 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDY---  152 (636)
T ss_dssp             CEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCC---
T ss_pred             CEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhcc---
Confidence            566777777777666663  5677777777777777541      00    0112211   12233 3444443332   


Q ss_pred             CcCchhhc-------------------CCCCCCeEECc--CCccccccCccccCCCCCcEEEcccCCCCCc---------
Q 042884          140 RILDRGLC-------------------SLMHLQELYKV--NNDLRGSLPWCVANMTSLRILDVSSNQLTGS---------  189 (614)
Q Consensus       140 ~i~~~~~~-------------------~l~~L~~L~L~--~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------  189 (614)
                      .++. .+.                   ....++.+.+.  .|++++ +|.+++++++|++|+|++|.+++.         
T Consensus       153 ~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          153 DPRE-DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             CGGG-GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             Cchh-hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence            2221 111                   11122333332  567777 788888888888888888888864         


Q ss_pred             --------cCCCCCC--CCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCc-ccc-cccccccCC---CCCccce
Q 042884          190 --------IASSPLA--HLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNE-LNA-EITESYSLT---TPNFQLQ  254 (614)
Q Consensus       190 --------~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~---~~~~~L~  254 (614)
                              +|.. ++  ++++|++|++++|.+.+.+| ..+.++++|+.|++++|. +++ ..+..+..+   ....+|+
T Consensus       231 ~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~  308 (636)
T 4eco_A          231 NSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ  308 (636)
T ss_dssp             TSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred             ccchhcccCchh-hhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence                    7765 66  88888888888888877666 567888888888888887 776 455444322   1224788


Q ss_pred             eeeccCCCCCCCCCCc--cccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCc-cCEEE
Q 042884          255 YLLLSSGYGDGATFPK--FLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKR-LRQLD  331 (614)
Q Consensus       255 ~L~l~~~~~~~~~~p~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~  331 (614)
                      +|++ .++... .+|.  .+..+++|++|++++|.+.+.+| . +..+++|++|++++|.+.. .+..+..+++ |+.|+
T Consensus       309 ~L~L-~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~  383 (636)
T 4eco_A          309 IIYI-GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLS  383 (636)
T ss_dssp             EEEC-CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEE
T ss_pred             EEEC-CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEE
Confidence            8888 556565 7888  89999999999999999998899 3 8899999999999999994 5566888999 99999


Q ss_pred             ccCCccccCCChhhhh-cCCCccEEEccCCcCCCCCccchh-------ccccCcEEEccCCccCCcCCchhhccCCCCCE
Q 042884          332 VSNNNFQGHIPLEIGD-ILPNLISFNISMNALDGSIPSSFG-------NINLLKILDLSNNQLTGEIPEHLAVGCVYLDF  403 (614)
Q Consensus       332 l~~n~i~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  403 (614)
                      +++|.++ .+|..+.. .+++|++|++++|.+++..|..+.       .+++|++|++++|.++ .+|..++..+++|++
T Consensus       384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS  461 (636)
T ss_dssp             CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred             ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence            9999998 88876544 134899999999999999998888       7889999999999999 899999889999999


Q ss_pred             EEccCCcccccc------c-------CCccEEEcCCCcCCccCCcccc--CCCcCCEEECcCCcCCCCCCcCCCCCCCCC
Q 042884          404 LALSNNSLEGKV------L-------SLLSGLDLSCNKLIGHIPPQIG--NLTRIQTLNLSHNNLTGLIPSTFSNLKHIE  468 (614)
Q Consensus       404 L~l~~n~l~~~~------~-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  468 (614)
                      |++++|+++...      .       ++|+.|+|++|+++ .+|..+.  .+++|++|+|++|++++ +|..+..+++|+
T Consensus       462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~  539 (636)
T 4eco_A          462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK  539 (636)
T ss_dssp             EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred             EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence            999999998422      1       18999999999999 6777776  99999999999999998 788899999999


Q ss_pred             EEEc------cCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCC
Q 042884          469 SLDL------SYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGL  529 (614)
Q Consensus       469 ~L~l------s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~  529 (614)
                      +|++      ++|++.+.+|..+..+++|++|++++|++ +.+|..+.  ++++.+++++|++.|-.
T Consensus       540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            9999      56788889999999999999999999999 57777554  79999999999998843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.3e-43  Score=394.07  Aligned_cols=445  Identities=16%  Similarity=0.188  Sum_probs=351.1

Q ss_pred             CCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeC-CCCCCCccchHH-------------------------------
Q 042884           18 PSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTL-SGSSLHISLLQS-------------------------------   64 (614)
Q Consensus        18 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~L-s~n~~~~~~~~~-------------------------------   64 (614)
                      ..++.|+|++|.+.+.    +| +++.+++|++|+| ++|.+.+..+..                               
T Consensus       323 ~~V~~L~Ls~~~L~G~----ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~  398 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGR----VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL  398 (876)
T ss_dssp             SCEEEEECTTTCCEEE----ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred             CCEEEEECccCCCCCc----CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence            5688999999999877    56 8999999999999 777554431100                               


Q ss_pred             ---------Hh-----------hccCCcEEec--cCccccCCccCCCCCCCCCCCCEEeCcCcccCCCc-----------
Q 042884           65 ---------IA-----------SLFPSLKNLS--MSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNT-----------  111 (614)
Q Consensus        65 ---------~~-----------~l~~l~~l~l--~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------  111 (614)
                               +.           ....++.+.+  ..|.+.+ +|.  .++++++|++|++++|.+++..           
T Consensus       399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~--~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n  475 (876)
T 4ecn_A          399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK--AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD  475 (876)
T ss_dssp             GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG--GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred             hhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH--HHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence                     00           0001111111  1245554 774  6889999999999999987400           


Q ss_pred             ----chhhHhh--hcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCc-ccc-ccCccccCC-------CCC
Q 042884          112 ----SFLQIIG--ESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNND-LRG-SLPWCVANM-------TSL  176 (614)
Q Consensus       112 ----~~~~~l~--~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l-------~~L  176 (614)
                          .+|+.++  . +++|++|+|++|.+.+   .+|+ .+.++++|+.|++++|+ +++ .+|..+..+       ++|
T Consensus       476 ~~~g~iP~~l~f~~-L~~L~~L~Ls~N~l~~---~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L  550 (876)
T 4ecn_A          476 YAKQYENEELSWSN-LKDLTDVELYNCPNMT---QLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI  550 (876)
T ss_dssp             HHHHHTTSCCCGGG-CTTCCEEEEESCTTCC---SCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred             cccccCChhhhhcc-CCCCCEEECcCCCCCc---cChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence                1788876  6 9999999999998887   7776 89999999999999998 887 778766554       499


Q ss_pred             cEEEcccCCCCCccCC-CCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcc-ce
Q 042884          177 RILDVSSNQLTGSIAS-SPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ-LQ  254 (614)
Q Consensus       177 ~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-L~  254 (614)
                      ++|++++|.+. .+|. ..+..+++|++|++++|.+. .++  .+..+++|+.|++++|.+. ..+..+..   ..+ |+
T Consensus       551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~---l~~~L~  622 (876)
T 4ecn_A          551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCA---FTDQVE  622 (876)
T ss_dssp             CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCE---ECTTCC
T ss_pred             cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhh---ccccCC
Confidence            99999999998 8887 23889999999999999988 666  7889999999999999988 33333332   336 99


Q ss_pred             eeeccCCCCCCCCCCccccCCCC--CcEEEccCCCCCCCCChhH--Hh--cCCCccEEEccCCCCCCCCCCCCCCCCccC
Q 042884          255 YLLLSSGYGDGATFPKFLYHQHD--LEYVDLSHTKMNGEFPNWL--LE--NNTKLKTLFLVNDSLAGPFRLPIHSHKRLR  328 (614)
Q Consensus       255 ~L~l~~~~~~~~~~p~~~~~l~~--L~~L~Ls~n~i~~~~~~~~--~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  328 (614)
                      .|++ .++.+. .+|..+..++.  |+.|++++|.+.+.+|...  ..  .+++|+.|++++|.+..++...+..+++|+
T Consensus       623 ~L~L-s~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~  700 (876)
T 4ecn_A          623 GLGF-SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS  700 (876)
T ss_dssp             EEEC-CSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred             EEEC-cCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence            9999 555555 77887776654  9999999999987665321  11  345899999999999976665566889999


Q ss_pred             EEEccCCccccCCChhhhhcCC-------CccEEEccCCcCCCCCccchh--ccccCcEEEccCCccCCcCCchhhccCC
Q 042884          329 QLDVSNNNFQGHIPLEIGDILP-------NLISFNISMNALDGSIPSSFG--NINLLKILDLSNNQLTGEIPEHLAVGCV  399 (614)
Q Consensus       329 ~L~l~~n~i~~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~  399 (614)
                      .|++++|.++ .+|...+....       +|+.|+|++|+++ .+|..+.  .+++|+.|++++|++++ +|..+ ..++
T Consensus       701 ~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l-~~L~  776 (876)
T 4ecn_A          701 TIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP-LNSS  776 (876)
T ss_dssp             EEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG-GGCT
T ss_pred             EEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh-hcCC
Confidence            9999999998 88888776432       8999999999999 6677776  89999999999999994 88876 4899


Q ss_pred             CCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC
Q 042884          400 YLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG  479 (614)
Q Consensus       400 ~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  479 (614)
                      +|+.|++++|+            ++++|++.+.+|..|..+++|++|+|++|++ +.+|..+.  ++|+.|++++|++..
T Consensus       777 ~L~~L~Ls~N~------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          777 QLKAFGIRHQR------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             TCCEEECCCCB------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCCEEECCCCC------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            99999999987            6788999999999999999999999999999 56676665  699999999999998


Q ss_pred             CCcccccCCCCCCeEeccCCcCcc
Q 042884          480 KIPHQLVELKTLEVFSLAFNNLSG  503 (614)
Q Consensus       480 ~~~~~l~~l~~L~~L~l~~N~l~~  503 (614)
                      +.+..+.....+..+.+.+|+++.
T Consensus       842 i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          842 IDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             EECGGGHHHHHTTCCEEECCTTSE
T ss_pred             cChHHccccccchheeecCCCccc
Confidence            777777766677788888888763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.8e-42  Score=373.61  Aligned_cols=462  Identities=19%  Similarity=0.140  Sum_probs=311.9

Q ss_pred             CCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCC
Q 042884           16 SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFK   95 (614)
Q Consensus        16 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~   95 (614)
                      .+...+++|+++|+++++    +..+.  ++|++|++++|.+.+..+..+..+++|+++++++|.+.+..|  .+|.+++
T Consensus        29 ~~~~~~~l~ls~~~L~~i----p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~  100 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHV----PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVFLFNQ  100 (562)
T ss_dssp             ----CCEEECTTSCCCSC----CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT--TTTTTCT
T ss_pred             ccCCCcEEEcCCCCCccC----CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH--HHhCCCC
Confidence            344558999999999876    22332  789999999999988777888889999999999888765334  3688899


Q ss_pred             CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcC-chhhcCCCCCCeEECcCCccccccCccccCCC
Q 042884           96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRIL-DRGLCSLMHLQELYKVNNDLRGSLPWCVANMT  174 (614)
Q Consensus        96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  174 (614)
                      +|++|++++|.++   .+|..  . +++|++|++++|.++    .++ +..|+++++|++|++++|++++.   .+..++
T Consensus       101 ~L~~L~Ls~N~l~---~lp~~--~-l~~L~~L~Ls~N~l~----~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~  167 (562)
T 3a79_B          101 DLEYLDVSHNRLQ---NISCC--P-MASLRHLDLSFNDFD----VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA  167 (562)
T ss_dssp             TCCEEECTTSCCC---EECSC--C-CTTCSEEECCSSCCS----BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT
T ss_pred             CCCEEECCCCcCC---ccCcc--c-cccCCEEECCCCCcc----ccCchHhhcccCcccEEecCCCccccC---chhhhh
Confidence            9999999999887   66666  4 889999999998887    343 24788889999999999988753   345555


Q ss_pred             CC--cEEEcccCCC--CCccCCCCCCCCC-CCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCC
Q 042884          175 SL--RILDVSSNQL--TGSIASSPLAHLT-SIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTP  249 (614)
Q Consensus       175 ~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  249 (614)
                      +|  ++|++++|.+  .+..|.. +..+. ..-.+++++|.+.+.++...+..+++|+.+++++|......   +     
T Consensus       168 ~L~L~~L~L~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~---l-----  238 (562)
T 3a79_B          168 HLHLSCILLDLVSYHIKGGETES-LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR---L-----  238 (562)
T ss_dssp             TSCEEEEEEEESSCCCCSSSCCE-EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH---H-----
T ss_pred             hceeeEEEeecccccccccCccc-ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch---H-----
Confidence            55  9999999888  6555543 44443 11255777887776666566777888888888877521100   0     


Q ss_pred             CccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhH--HhcCCCccEEEccCCCCCCCCCCCC-----C
Q 042884          250 NFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL--LENNTKLKTLFLVNDSLAGPFRLPI-----H  322 (614)
Q Consensus       250 ~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~-----~  322 (614)
                                      ...+..+..+++|+.++++++.+.+......  ....++|++|++++|.+.+..+..+     .
T Consensus       239 ----------------~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~  302 (562)
T 3a79_B          239 ----------------MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET  302 (562)
T ss_dssp             ----------------HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred             ----------------HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccc
Confidence                            0011234455666666666655542211110  1123477777777777765555444     5


Q ss_pred             CCCccCEEEccCCccccCCChh-hhhc--CCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCC
Q 042884          323 SHKRLRQLDVSNNNFQGHIPLE-IGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCV  399 (614)
Q Consensus       323 ~l~~L~~L~l~~n~i~~~~~~~-~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  399 (614)
                      .++.|+.++++.+.+  .+|.. ++..  ..+|++|++++|.+....  ....+++|++|++++|.+++.+|..+ ..++
T Consensus       303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~  377 (562)
T 3a79_B          303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC-STLK  377 (562)
T ss_dssp             SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC-CSCS
T ss_pred             cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh-cccC
Confidence            555666666666655  34422 2221  255777777777765322  12566777777777777775455443 6677


Q ss_pred             CCCEEEccCCcccc--------cccCCccEEEcCCCcCCc-cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEE
Q 042884          400 YLDFLALSNNSLEG--------KVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL  470 (614)
Q Consensus       400 ~L~~L~l~~n~l~~--------~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  470 (614)
                      +|++|++++|++++        ..+++|++|++++|++++ ..+..+..+++|++|++++|++++..|..+.  ++|++|
T Consensus       378 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L  455 (562)
T 3a79_B          378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL  455 (562)
T ss_dssp             SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEE
T ss_pred             CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEE
Confidence            77777777777764        235678888888888876 3344577788888888888888766655543  678888


Q ss_pred             EccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884          471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       471 ~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      ++++|+++ .+|..+..+++|++|++++|++++..+..+..+++++.+++++|||.|+|+.
T Consensus       456 ~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             ECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             ECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            88888887 5666666888888888888888843333377778888888888888888764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.8e-42  Score=375.15  Aligned_cols=452  Identities=15%  Similarity=0.125  Sum_probs=340.0

Q ss_pred             cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884            6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG   84 (614)
Q Consensus         6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~   84 (614)
                      ..+.+|..+.  ++|++|++++|.++++    .+ .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. .
T Consensus        42 ~L~~ip~~~~--~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~  114 (562)
T 3a79_B           42 NLTHVPKDLP--PRTKALSLSQNSISEL----RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-N  114 (562)
T ss_dssp             CCCSCCTTSC--TTCCEEECCSSCCCCC----CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-E
T ss_pred             CCccCCCCCC--CCcCEEECCCCCcccc----ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-c
Confidence            3456777554  8999999999999988    55 8999999999999999999888899999999999999999976 5


Q ss_pred             ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC--CeEECcCCcc
Q 042884           85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL--QELYKVNNDL  162 (614)
Q Consensus        85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L--~~L~L~~n~i  162 (614)
                      +|..    .+++|++|++++|.+.. ..+|..+.. +++|++|++++|.+.+       ..+..+++|  ++|++++|.+
T Consensus       115 lp~~----~l~~L~~L~Ls~N~l~~-l~~p~~~~~-l~~L~~L~L~~n~l~~-------~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          115 ISCC----PMASLRHLDLSFNDFDV-LPVCKEFGN-LTKLTFLGLSAAKFRQ-------LDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             ECSC----CCTTCSEEECCSSCCSB-CCCCGGGGG-CTTCCEEEEECSBCCT-------TTTGGGTTSCEEEEEEEESSC
T ss_pred             cCcc----ccccCCEEECCCCCccc-cCchHhhcc-cCcccEEecCCCcccc-------CchhhhhhceeeEEEeecccc
Confidence            7742    79999999999999873 123467777 9999999999999874       234555555  9999999999


Q ss_pred             --ccccCccccCCC-CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCc-----cccCcccccCCCCccEEEccCC
Q 042884          163 --RGSLPWCVANMT-SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR-----IPISLEPLFNHSRLKIFDAENN  234 (614)
Q Consensus       163 --~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----~~~~~~~~~~l~~L~~L~l~~n  234 (614)
                        ++..|.++..+. ..-.+++++|.+.+.++...+..+++|+.+++++|...     +.+  ..+..+++|+.++++++
T Consensus       182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEEEEEEE
T ss_pred             cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcceEEEecCC
Confidence              888898888775 22366889999887788777889999999999998522     122  34678889999999888


Q ss_pred             cccccccccccCCCCCccceeeeccCCCCCCCCCCccc-----cCCCCCcEEEccCCCCCCCCChhHHhc---CCCccEE
Q 042884          235 ELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFL-----YHQHDLEYVDLSHTKMNGEFPNWLLEN---NTKLKTL  306 (614)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~-----~~l~~L~~L~Ls~n~i~~~~~~~~~~~---~~~L~~L  306 (614)
                      .+.+.............+|++|++ .++...+.+|..+     ..++.|+.++++.+.+  .+|...+..   ..+|++|
T Consensus       260 ~l~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L  336 (562)
T 3a79_B          260 ETTWKCSVKLFQFFWPRPVEYLNI-YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML  336 (562)
T ss_dssp             EECHHHHHHHHHHHTTSSEEEEEE-EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred             cCcHHHHHHHHHhhhcccccEEEE-eccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence            766432221111112237888888 5666666677766     5666666777777766  455332222   2568888


Q ss_pred             EccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCC--CccchhccccCcEEEccCC
Q 042884          307 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGS--IPSSFGNINLLKILDLSNN  384 (614)
Q Consensus       307 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n  384 (614)
                      ++++|.+....  ....+++|++|++++|.+++.+|..+.. +++|++|++++|++++.  .|..+..+++|++|++++|
T Consensus       337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N  413 (562)
T 3a79_B          337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN  413 (562)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred             EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence            88888876432  1256788888888888888656655544 78888888888888863  3456788888888888888


Q ss_pred             ccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCC
Q 042884          385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL  464 (614)
Q Consensus       385 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  464 (614)
                      ++++.+|...+..+++|++|++                  ++|++++..|..+.  ++|++|++++|+++. +|..+..+
T Consensus       414 ~l~~~~~~~~~~~l~~L~~L~l------------------~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l  472 (562)
T 3a79_B          414 SLNSHAYDRTCAWAESILVLNL------------------SSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHL  472 (562)
T ss_dssp             CCBSCCSSCCCCCCTTCCEEEC------------------CSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSS
T ss_pred             cCCCccChhhhcCcccCCEEEC------------------CCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCC
Confidence            8875577776655555555554                  55555444444333  689999999999985 45555599


Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          465 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       465 ~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      ++|++|++++|+++.+.+..+..+++|+.|++++|+++|.++
T Consensus       473 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            999999999999995444448999999999999999998766

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-39  Score=344.24  Aligned_cols=373  Identities=20%  Similarity=0.225  Sum_probs=227.2

Q ss_pred             CEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc-CccccCCCCC
Q 042884           98 EHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL-PWCVANMTSL  176 (614)
Q Consensus        98 ~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L  176 (614)
                      +.++.+++.++   .+|. +   .++|++|++++|.++    .+++..|.++++|++|++++|.+.+.+ +..|.++++|
T Consensus        13 ~~~~c~~~~l~---~lp~-l---~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L   81 (455)
T 3v47_A           13 YNAICINRGLH---QVPE-L---PAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL   81 (455)
T ss_dssp             TEEECCSSCCS---SCCC-C---CTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred             cccCcCCCCcc---cCCC-C---CCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence            35666666665   5555 2   467777777777776    444446777777777777777776433 5567777777


Q ss_pred             cEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccC-cccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884          177 RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPIS-LEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY  255 (614)
Q Consensus       177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  255 (614)
                      ++|++++|++. .++...|..+++|++|++++|.+++..+ ...+..+++|++|++++|.+.+..               
T Consensus        82 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------  145 (455)
T 3v47_A           82 IILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ---------------  145 (455)
T ss_dssp             CEEECTTCTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC---------------
T ss_pred             CEEeCCCCccC-ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC---------------
Confidence            77777777777 3333347777777777777777764222 223666777777777777665332               


Q ss_pred             eeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCChhHHhcC--CCccEEEccCCCCCCCCCCCC--------CCC
Q 042884          256 LLLSSGYGDGATFPK-FLYHQHDLEYVDLSHTKMNGEFPNWLLENN--TKLKTLFLVNDSLAGPFRLPI--------HSH  324 (614)
Q Consensus       256 L~l~~~~~~~~~~p~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~--------~~l  324 (614)
                                   |. .+..+++|++|++++|.+.+..+.. +..+  .+|+.|++++|.+....+..+        ..+
T Consensus       146 -------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  211 (455)
T 3v47_A          146 -------------PASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN  211 (455)
T ss_dssp             -------------CCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred             -------------cccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhcccccccccccc
Confidence                         22 2456777888888888777555544 3333  577777888777776554432        245


Q ss_pred             CccCEEEccCCccccCCChhhhhc--CCCccEEEccCCcCCCC----------Cccchhcc--ccCcEEEccCCccCCcC
Q 042884          325 KRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGS----------IPSSFGNI--NLLKILDLSNNQLTGEI  390 (614)
Q Consensus       325 ~~L~~L~l~~n~i~~~~~~~~~~~--l~~L~~L~L~~n~l~~~----------~~~~~~~l--~~L~~L~l~~n~l~~~~  390 (614)
                      ++|+.|++++|.+++..|..++..  .++|+.|++++|...+.          .+..+..+  ++|++|++++|.+.+..
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence            677777777777776666555442  26777777777654321          11122222  45666666666666333


Q ss_pred             CchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEE
Q 042884          391 PEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL  470 (614)
Q Consensus       391 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  470 (614)
                      | ..+..+++|+                  +|++++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|
T Consensus       292 ~-~~~~~l~~L~------------------~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          292 K-SVFSHFTDLE------------------QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             T-TTTTTCTTCC------------------EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             h-hhcccCCCCC------------------EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            3 3334444454                  45555555555555556666666666666666665555556666666666


Q ss_pred             EccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       471 ~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      ++++|++++..|..|..+++|++|++++|++++..+..+..+++++.+++++||+.|+||
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            666666665555556666666666666666665444445555666666666666666655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.6e-39  Score=358.11  Aligned_cols=500  Identities=20%  Similarity=0.179  Sum_probs=339.7

Q ss_pred             ccCCcccc-ccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCcccc
Q 042884            5 RDGSKLLQ-SMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEV   82 (614)
Q Consensus         5 ~~~~~l~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~   82 (614)
                      ...+.+|+ +|.++++|++|||++|+|+++    .+ +|.++++|++|+|++|++....+..|.++.+|++|++++|.+.
T Consensus        62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i----~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~  137 (635)
T 4g8a_A           62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  137 (635)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCCCCHHHHhCCCCCCEEECCCCcCCCc----ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence            34566765 799999999999999999987    45 7999999999999999999777788999999999999999886


Q ss_pred             CCccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC----CeEECc
Q 042884           83 NGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL----QELYKV  158 (614)
Q Consensus        83 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L----~~L~L~  158 (614)
                      + ++. ..|+++++|++|++++|.+.. ...|..+.. +++|++|++++|.++    .+++..+..+.++    ..++++
T Consensus       138 ~-l~~-~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~-l~~L~~L~L~~N~l~----~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          138 S-LEN-FPIGHLKTLKELNVAHNLIQS-FKLPEYFSN-LTNLEHLDLSSNKIQ----SIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             C-STT-CCCTTCTTCCEEECCSSCCCC-CCCCGGGGG-CTTCCEEECCSSCCC----EECGGGGHHHHTCTTCCCEEECT
T ss_pred             C-CCh-hhhhcCcccCeeccccCcccc-CCCchhhcc-chhhhhhcccCcccc----ccccccccchhhhhhhhhhhhcc
Confidence            4 554 369999999999999999863 135667777 999999999999998    4555466555443    468889


Q ss_pred             CCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEc------------------------------cc
Q 042884          159 NNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHL------------------------------SD  208 (614)
Q Consensus       159 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L------------------------------~~  208 (614)
                      .|.++...+..+. ...++.+++.+|.....++...+..+..++...+                              ..
T Consensus       210 ~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~  288 (635)
T 4g8a_A          210 LNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  288 (635)
T ss_dssp             TCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred             cCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence            9998865554443 3456677777665432222222333333333322                              11


Q ss_pred             CcCcc--ccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCC
Q 042884          209 NHFRI--PISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHT  286 (614)
Q Consensus       209 n~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n  286 (614)
                      +....  ......+....+++.+++..+.+.......     ....++.|++ .++......+   ..++.|+.++++.|
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-----~~~~L~~L~l-~~~~~~~~~~---~~l~~L~~l~l~~n  359 (635)
T 4g8a_A          289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS-----YNFGWQHLEL-VNCKFGQFPT---LKLKSLKRLTFTSN  359 (635)
T ss_dssp             ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG-----SCCCCSEEEE-ESCEESSCCC---CBCTTCCEEEEESC
T ss_pred             hhhcccccchhhhhhhhcccccccccccccccccccc-----cchhhhhhhc-ccccccCcCc---ccchhhhhcccccc
Confidence            11100  001112344456667777666655433211     1225666666 3332222211   23556677777777


Q ss_pred             CCCCCCChhHHhcCCCccEEEccCCCCCCCC--CCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCC
Q 042884          287 KMNGEFPNWLLENNTKLKTLFLVNDSLAGPF--RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG  364 (614)
Q Consensus       287 ~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~  364 (614)
                      ......+   +..+++|+.|++++|.+....  +..+..+.+|+.+++..+.+. .++..+.. +++|+.++++.+....
T Consensus       360 ~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~-l~~L~~l~l~~~~~~~  434 (635)
T 4g8a_A          360 KGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQ  434 (635)
T ss_dssp             CSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTT-CTTCCEEECTTSEEES
T ss_pred             cCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccc-cccccchhhhhccccc
Confidence            6653222   345677777777777665322  223345566777777777665 33333333 6677777777665543


Q ss_pred             C-CccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-------cccCCccEEEcCCCcCCccCCcc
Q 042884          365 S-IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-------KVLSLLSGLDLSCNKLIGHIPPQ  436 (614)
Q Consensus       365 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~L~~L~L~~n~l~~~~~~~  436 (614)
                      . .+..|..+++++.++++.|.+. ..+...+..++.++.|++++|++..       ..+++|++|+|++|++++..|.+
T Consensus       435 ~~~~~~~~~l~~l~~l~ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~  513 (635)
T 4g8a_A          435 MSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  513 (635)
T ss_dssp             TTSSCTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cccccccccccccccccccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence            3 3345666777777777777776 4444555667777777777776432       23577889999999999899999


Q ss_pred             ccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC-CCCCeEeccCCcCcccCC-ccccccCC
Q 042884          437 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVFSLAFNNLSGEIP-EWKAQFAT  514 (614)
Q Consensus       437 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~-~~~~~~~~  514 (614)
                      |.++++|++|+|++|+++++++..|.++++|++|++++|+|++..|+.|..+ ++|++|++++|+++|.+. .|+..|-.
T Consensus       514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~  593 (635)
T 4g8a_A          514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK  593 (635)
T ss_dssp             TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred             HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988 689999999999998654 23433321


Q ss_pred             -cCcccccCCcCCCCCCCC
Q 042884          515 -FNESSYEGNTFLCGLPLP  532 (614)
Q Consensus       515 -l~~~~~~~n~~~c~~~~~  532 (614)
                       -...........|.-|..
T Consensus       594 ~~~~~~~~~~~~~C~~P~~  612 (635)
T 4g8a_A          594 DQRQLLVEVERMECATPSD  612 (635)
T ss_dssp             HTTTTBSCGGGCBBCSSTT
T ss_pred             hCCCccCCCCCceeCCchH
Confidence             111122234567876654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.3e-38  Score=331.50  Aligned_cols=378  Identities=20%  Similarity=0.207  Sum_probs=302.1

Q ss_pred             EEeccCccccCCccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC
Q 042884           73 KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL  152 (614)
Q Consensus        73 ~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L  152 (614)
                      .++..++.+ ..+|.   +  .++|++|++++|.+.+  ..|..+.. +++|++|++++|.+.+   .+++..|.++++|
T Consensus        14 ~~~c~~~~l-~~lp~---l--~~~l~~L~Ls~n~i~~--~~~~~~~~-l~~L~~L~L~~n~~~~---~i~~~~~~~l~~L   81 (455)
T 3v47_A           14 NAICINRGL-HQVPE---L--PAHVNYVDLSLNSIAE--LNETSFSR-LQDLQFLKVEQQTPGL---VIRNNTFRGLSSL   81 (455)
T ss_dssp             EEECCSSCC-SSCCC---C--CTTCCEEECCSSCCCE--ECTTTTSS-CTTCCEEECCCCSTTC---EECTTTTTTCTTC
T ss_pred             ccCcCCCCc-ccCCC---C--CCccCEEEecCCccCc--CChhHhcc-CccccEEECcCCcccc---eECcccccccccC
Confidence            344444443 35663   2  2789999999999984  44677777 9999999999999876   6777689999999


Q ss_pred             CeEECcCCccccccCccccCCCCCcEEEcccCCCCCcc-CCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEc
Q 042884          153 QELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI-ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDA  231 (614)
Q Consensus       153 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l  231 (614)
                      ++|++++|++++..|.+|.++++|++|++++|.+.+.+ +...+..+++|++|++++|.+.+..+...+..+++|++|++
T Consensus        82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A           82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence            99999999999888999999999999999999998643 33458899999999999999986555445889999999999


Q ss_pred             cCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhH-------HhcCCCcc
Q 042884          232 ENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL-------LENNTKLK  304 (614)
Q Consensus       232 ~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-------~~~~~~L~  304 (614)
                      ++|.+.+..+..+...                          ...+|+.|++++|.+.+..+..+       +..+++|+
T Consensus       162 ~~n~l~~~~~~~l~~l--------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~  215 (455)
T 3v47_A          162 TFNKVKSICEEDLLNF--------------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT  215 (455)
T ss_dssp             TTCCBSCCCTTTSGGG--------------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE
T ss_pred             CCCcccccChhhhhcc--------------------------ccccccccccccCcccccchhhccccccccccccceee
Confidence            9999876544322211                          22588999999999984333211       12557899


Q ss_pred             EEEccCCCCCCCCCCCCCC---CCccCEEEccCCccccCCC---------hhhhh--cCCCccEEEccCCcCCCCCccch
Q 042884          305 TLFLVNDSLAGPFRLPIHS---HKRLRQLDVSNNNFQGHIP---------LEIGD--ILPNLISFNISMNALDGSIPSSF  370 (614)
Q Consensus       305 ~L~l~~n~i~~~~~~~~~~---l~~L~~L~l~~n~i~~~~~---------~~~~~--~l~~L~~L~L~~n~l~~~~~~~~  370 (614)
                      +|++++|.+.+..+..+..   .++|+.|++++|.+.+...         ...+.  ..++|++|++++|.+.+..|..+
T Consensus       216 ~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  295 (455)
T 3v47_A          216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF  295 (455)
T ss_dssp             EEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT
T ss_pred             eEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc
Confidence            9999999998765554433   3789999999986543211         11111  13689999999999999999999


Q ss_pred             hccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcC
Q 042884          371 GNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH  450 (614)
Q Consensus       371 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  450 (614)
                      ..+++|++|++++|+++ .++...+..++                  +|++|++++|.+++..|..|.++++|++|+|++
T Consensus       296 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEIN-KIDDNAFWGLT------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             TTCTTCCEEECTTSCCC-EECTTTTTTCT------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             ccCCCCCEEECCCCccc-ccChhHhcCcc------------------cCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            99999999999999998 44444444444                  455566666666667788899999999999999


Q ss_pred             CcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCc
Q 042884          451 NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE  507 (614)
Q Consensus       451 n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  507 (614)
                      |++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++.+|.
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999999999999999999987777889999999999999999998884

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.9e-38  Score=326.75  Aligned_cols=403  Identities=22%  Similarity=0.274  Sum_probs=158.5

Q ss_pred             CCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCC
Q 042884           16 SLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHF   94 (614)
Q Consensus        16 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l   94 (614)
                      +.++|++|++++|.+..     +| +++++++|++|++++|.+.+..|..++.+..++.+.+..|..             
T Consensus         9 ~~~~L~~L~l~~n~l~~-----iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------   70 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTE-----MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------   70 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------
T ss_pred             ccccchhhhcccCchhh-----CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------
Confidence            35677777777777733     34 677777777777777766666666555554432222111110             


Q ss_pred             CCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCC
Q 042884           95 KSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMT  174 (614)
Q Consensus        95 ~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  174 (614)
                      .++++|++++|.++   .+|..    .++|++|++++|.++    .+|+    .+++|++|++++|++++ ++..   .+
T Consensus        71 ~~l~~L~l~~~~l~---~lp~~----~~~L~~L~l~~n~l~----~lp~----~~~~L~~L~l~~n~l~~-l~~~---~~  131 (454)
T 1jl5_A           71 RQAHELELNNLGLS---SLPEL----PPHLESLVASCNSLT----ELPE----LPQSLKSLLVDNNNLKA-LSDL---PP  131 (454)
T ss_dssp             HTCSEEECTTSCCS---CCCSC----CTTCSEEECCSSCCS----SCCC----CCTTCCEEECCSSCCSC-CCSC---CT
T ss_pred             cCCCEEEecCCccc---cCCCC----cCCCCEEEccCCcCC----cccc----ccCCCcEEECCCCccCc-ccCC---CC
Confidence            12344444444443   22221    234444444444444    2222    12344444444444442 1110   13


Q ss_pred             CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccce
Q 042884          175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQ  254 (614)
Q Consensus       175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~  254 (614)
                      +|++|++++|++. .+|.  ++.+++|++|++++|.+++ ++.    ...+|+.|++++|.+.+                
T Consensus       132 ~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~----------------  187 (454)
T 1jl5_A          132 LLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE----------------  187 (454)
T ss_dssp             TCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS----------------
T ss_pred             CCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCc----------------
Confidence            4444444444444 2441  4444444444444444432 221    11244444444443322                


Q ss_pred             eeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccC
Q 042884          255 YLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSN  334 (614)
Q Consensus       255 ~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  334 (614)
                                   +| .+..+++|++|++++|.+.+ +|..    .++|++|++++|.+..++  .+..+++|+.|++++
T Consensus       188 -------------l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          188 -------------LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADN  246 (454)
T ss_dssp             -------------CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred             -------------Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCC
Confidence                         11 23344455555555555542 3321    134555555555555322  244555555555555


Q ss_pred             CccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-
Q 042884          335 NNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-  413 (614)
Q Consensus       335 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-  413 (614)
                      |.++ .+|..    +++|++|++++|++++ +|..   .++|++|++++|+++ .+|..    .++|++|++++|++++ 
T Consensus       247 N~l~-~l~~~----~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~-~l~~~----~~~L~~L~l~~N~l~~i  312 (454)
T 1jl5_A          247 NLLK-TLPDL----PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS-GLSEL----PPNLYYLNASSNEIRSL  312 (454)
T ss_dssp             SCCS-SCCSC----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-EESCC----CTTCCEEECCSSCCSEE
T ss_pred             CcCC-ccccc----ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC-cccCc----CCcCCEEECcCCcCCcc
Confidence            5554 33321    3455555555555553 2221   245555555555554 22211    1345555555555544 


Q ss_pred             -cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC--CCcccccCC--
Q 042884          414 -KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG--KIPHQLVEL--  488 (614)
Q Consensus       414 -~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~--~~~~~l~~l--  488 (614)
                       ..+++|++|++++|++++ +|..   +++|++|++++|+++++ |.   .+++|++|++++|++++  .+|..+..+  
T Consensus       313 ~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~  384 (454)
T 1jl5_A          313 CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRM  384 (454)
T ss_dssp             CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred             cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence             223456666666666654 3332   35666666666666643 33   24566666666666665  455555554  


Q ss_pred             -----------CCCCeEeccCCcCcc--cCCccccccCCcCcccccCCcCCCC
Q 042884          489 -----------KTLEVFSLAFNNLSG--EIPEWKAQFATFNESSYEGNTFLCG  528 (614)
Q Consensus       489 -----------~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~~~~~~n~~~c~  528 (614)
                                 ++|+.|++++|++++  .+|.      .++.+.+.+|.+.|.
T Consensus       385 n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~  431 (454)
T 1jl5_A          385 NSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDP  431 (454)
T ss_dssp             CC---------------------------------------------------
T ss_pred             cccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCc
Confidence                       789999999999986  5664      345556666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.9e-38  Score=327.95  Aligned_cols=401  Identities=22%  Similarity=0.235  Sum_probs=195.0

Q ss_pred             ccCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccC
Q 042884            5 RDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVN   83 (614)
Q Consensus         5 ~~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~   83 (614)
                      ....++|++++++++|++|++++|.+.+.    +| .++.+++|+.++++.|.           ...++++++.+|.+.+
T Consensus        21 n~l~~iP~~i~~L~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A           21 SNLTEMPVEAENVKSKTEYYNAWSEWERN----APPGNGEQREMAVSRLRDCL-----------DRQAHELELNNLGLSS   85 (454)
T ss_dssp             -------------CCHHHHHHHHHHHHHT----SCTTSCCCHHHHHHHHHHHH-----------HHTCSEEECTTSCCSC
T ss_pred             CchhhCChhHhcccchhhhhccCCccccc----CCcccccchhcchhhhhhhh-----------ccCCCEEEecCCcccc
Confidence            34468999999999999999999999876    55 78888887555544431           1356666666666542


Q ss_pred             CccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccc
Q 042884           84 GVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLR  163 (614)
Q Consensus        84 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~  163 (614)
                       +|.   +  .++|++|++++|.++   .+|+.    .++|++|++++|.+++    ++.  +  .++|++|++++|+++
T Consensus        86 -lp~---~--~~~L~~L~l~~n~l~---~lp~~----~~~L~~L~l~~n~l~~----l~~--~--~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           86 -LPE---L--PPHLESLVASCNSLT---ELPEL----PQSLKSLLVDNNNLKA----LSD--L--PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             -CCS---C--CTTCSEEECCSSCCS---SCCCC----CTTCCEEECCSSCCSC----CCS--C--CTTCCEEECCSSCCS
T ss_pred             -CCC---C--cCCCCEEEccCCcCC---ccccc----cCCCcEEECCCCccCc----ccC--C--CCCCCEEECcCCCCC
Confidence             442   1  257778888877776   34432    4677888888777762    332  1  157888888888887


Q ss_pred             cccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccccccccc
Q 042884          164 GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITES  243 (614)
Q Consensus       164 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  243 (614)
                      + +| .|.++++|++|++++|+++ .+|..    .++|++|++++|.+++ ++  .+..+++|+.|++++|.+.+... .
T Consensus       145 ~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~-~  213 (454)
T 1jl5_A          145 K-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPD-L  213 (454)
T ss_dssp             S-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCC-C
T ss_pred             C-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCC-C
Confidence            5 56 4778888888888888877 46642    2578888888887774 43  47777888888888877654211 0


Q ss_pred             ccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCC
Q 042884          244 YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHS  323 (614)
Q Consensus       244 ~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  323 (614)
                            ..+|++|++ +++... .+|. +..+++|++|++++|++. .+|.    ..++|++|++++|.+.+++..    
T Consensus       214 ------~~~L~~L~l-~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l~~~----  275 (454)
T 1jl5_A          214 ------PLSLESIVA-GNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLPEL----  275 (454)
T ss_dssp             ------CTTCCEEEC-CSSCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCCCCC----
T ss_pred             ------cCcccEEEC-cCCcCC-cccc-cCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccccCcc----
Confidence                  013444444 222222 2332 444555555555555554 2332    124555555555555543221    


Q ss_pred             CCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCE
Q 042884          324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDF  403 (614)
Q Consensus       324 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  403 (614)
                      +++|+.|++++|.+++ +|.    ..++|++|++++|++++. +.   ..++|++|++++|+++ .+|..          
T Consensus       276 ~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~-~lp~~----------  335 (454)
T 1jl5_A          276 PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLI-ELPAL----------  335 (454)
T ss_dssp             CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCS-CCCCC----------
T ss_pred             cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCccc-ccccc----------
Confidence            2445555555555542 221    023455555555554421 10   0124555555555554 23331          


Q ss_pred             EEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCC--CCCcCCCCC-------------CCCC
Q 042884          404 LALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG--LIPSTFSNL-------------KHIE  468 (614)
Q Consensus       404 L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l-------------~~L~  468 (614)
                                  +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|..+..+             ++|+
T Consensus       336 ------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~  399 (454)
T 1jl5_A          336 ------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK  399 (454)
T ss_dssp             ------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------
T ss_pred             ------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCC
Confidence                        3455555555555552 333   24556666666666655  445555444             8899


Q ss_pred             EEEccCCcCCC--CCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884          469 SLDLSYNKLNG--KIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF  512 (614)
Q Consensus       469 ~L~ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  512 (614)
                      .|++++|++++  .+|.      +++.|.+.+|.+.+..+.+...+
T Consensus       400 ~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~  439 (454)
T 1jl5_A          400 QLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETT  439 (454)
T ss_dssp             ----------------------------------------------
T ss_pred             EEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHHh
Confidence            99999999986  4443      46777889999887776654433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.2e-37  Score=323.81  Aligned_cols=347  Identities=20%  Similarity=0.221  Sum_probs=246.9

Q ss_pred             CEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCc
Q 042884           98 EHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLR  177 (614)
Q Consensus        98 ~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  177 (614)
                      +.++.+++.++   .+|..+   .+++++|++++|.++    .+++..|.++++|++|++++|.+++..|.+|.++++|+
T Consensus        14 ~~v~c~~~~l~---~ip~~~---~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~   83 (477)
T 2id5_A           14 RAVLCHRKRFV---AVPEGI---PTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR   83 (477)
T ss_dssp             TEEECCSCCCS---SCCSCC---CTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CEEEeCCCCcC---cCCCCC---CCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCC
Confidence            45677777666   566654   457888899888887    56555788899999999999999888888899999999


Q ss_pred             EEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeee
Q 042884          178 ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLL  257 (614)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  257 (614)
                      +|+|++|.+. .+|...|..+++|++|++++|.+.+ +....+..+++|+.|++++|.+....                 
T Consensus        84 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------  144 (477)
T 2id5_A           84 TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYIS-----------------  144 (477)
T ss_dssp             EEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEEC-----------------
T ss_pred             EEECCCCcCC-ccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeC-----------------
Confidence            9999999988 7777778889999999999998874 33356788888888888888776432                 


Q ss_pred             ccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCcc
Q 042884          258 LSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNF  337 (614)
Q Consensus       258 l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i  337 (614)
                                 +..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.++.+..|..+++|+.|++++|..
T Consensus       145 -----------~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          145 -----------HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             -----------TTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             -----------hhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence                       234556788888888888887 56665578888888888888888877777777777788887777766


Q ss_pred             ccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccC
Q 042884          338 QGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLS  417 (614)
Q Consensus       338 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  417 (614)
                      .+.++...+. ..+|++|++++|.+++..+..+..+++|++|++++|.++                              
T Consensus       213 ~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------------------  261 (477)
T 2id5_A          213 LDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS------------------------------  261 (477)
T ss_dssp             CCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC------------------------------
T ss_pred             ccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC------------------------------
Confidence            5555555444 335555555555555433344444444444444444443                              


Q ss_pred             CccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEecc
Q 042884          418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA  497 (614)
Q Consensus       418 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~  497 (614)
                                   +..+..|..+++|++|+|++|++++..|..|.++++|+.|++++|++++..+..|..+++|+.|+++
T Consensus       262 -------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          262 -------------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             -------------EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             -------------ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence                         3444556677777777777777777777777778888888888888877666677777888888888


Q ss_pred             CCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          498 FNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       498 ~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      +|++.+.++. ..-+.......+.++...|..|
T Consensus       329 ~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          329 SNPLACDCRL-LWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             SSCEECSGGG-HHHHTTTTSSCCTTCCCBEEES
T ss_pred             CCCccCccch-HhHHhhhhccccCccCceeCCc
Confidence            8888765442 1112223345556666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.5e-35  Score=313.09  Aligned_cols=342  Identities=26%  Similarity=0.369  Sum_probs=226.1

Q ss_pred             CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCC
Q 042884           94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM  173 (614)
Q Consensus        94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  173 (614)
                      +++++.|++.++.+.   .++. +.. +++|++|++++|.++    .+++  +..+++|++|++++|.+++..+  +.++
T Consensus        45 l~~l~~L~l~~~~i~---~l~~-~~~-l~~L~~L~Ls~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l  111 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK---SIDG-VEY-LNNLTQINFSNNQLT----DITP--LKNLTKLVDILMNNNQIADITP--LANL  111 (466)
T ss_dssp             HHTCCEEECCSSCCC---CCTT-GGG-CTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             hccccEEecCCCCCc---cCcc-hhh-hcCCCEEECCCCccC----Cchh--hhccccCCEEECCCCccccChh--hcCC
Confidence            456666666666665   3332 444 667777777776665    3333  6666777777777777664443  6667


Q ss_pred             CCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccc
Q 042884          174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQL  253 (614)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  253 (614)
                      ++|++|++++|.+. .++.  +..+++|++|++++|.+.. +  ..+..+++|+.|++++ .+..               
T Consensus       112 ~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~-~~~~---------------  169 (466)
T 1o6v_A          112 TNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD-I--SALSGLTSLQQLSFGN-QVTD---------------  169 (466)
T ss_dssp             TTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECC-C--GGGTTCTTCSEEEEEE-SCCC---------------
T ss_pred             CCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCC-C--hhhccCCcccEeecCC-cccC---------------
Confidence            77777777777666 3443  5667777777777776652 2  2356666666666642 2111               


Q ss_pred             eeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEcc
Q 042884          254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVS  333 (614)
Q Consensus       254 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  333 (614)
                                    . ..+..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|+.|+++
T Consensus       170 --------------~-~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  229 (466)
T 1o6v_A          170 --------------L-KPLANLTTLERLDISSNKVS-DISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLN  229 (466)
T ss_dssp             --------------C-GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred             --------------c-hhhccCCCCCEEECcCCcCC-CChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECC
Confidence                          0 11445666777777777665 3332  5566777777777777666443  5556677777777


Q ss_pred             CCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc
Q 042884          334 NNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG  413 (614)
Q Consensus       334 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  413 (614)
                      +|.++ .++ .+ ..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++.  +..+++|+.|++++|++++
T Consensus       230 ~n~l~-~~~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~  301 (466)
T 1o6v_A          230 GNQLK-DIG-TL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLED  301 (466)
T ss_dssp             SSCCC-CCG-GG-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSC
T ss_pred             CCCcc-cch-hh-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccC
Confidence            77765 332 22 336777777777777765543  666777777777777776 3333  4566677777777776654


Q ss_pred             c----ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC
Q 042884          414 K----VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK  489 (614)
Q Consensus       414 ~----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~  489 (614)
                      .    .+++|+.|++++|++++..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++..|  +..++
T Consensus       302 ~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~  375 (466)
T 1o6v_A          302 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT  375 (466)
T ss_dssp             CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred             chhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC
Confidence            2    35677888888888876654  67888999999999988876  468888999999999999987766  78888


Q ss_pred             CCCeEeccCCcCccc
Q 042884          490 TLEVFSLAFNNLSGE  504 (614)
Q Consensus       490 ~L~~L~l~~N~l~~~  504 (614)
                      +|+.|++++|++++.
T Consensus       376 ~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          376 RITQLGLNDQAWTNA  390 (466)
T ss_dssp             TCCEEECCCEEEECC
T ss_pred             CCCEEeccCCcccCC
Confidence            999999999988863

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=320.41  Aligned_cols=325  Identities=18%  Similarity=0.196  Sum_probs=240.8

Q ss_pred             CEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEE
Q 042884          125 KYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL  204 (614)
Q Consensus       125 ~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  204 (614)
                      +.++.+++.++    .+|. .+.  ++++.|++++|++++..+..|.++++|++|+|++|.+. .++...|.++++|++|
T Consensus        14 ~~v~c~~~~l~----~ip~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L   85 (477)
T 2id5_A           14 RAVLCHRKRFV----AVPE-GIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTL   85 (477)
T ss_dssp             TEEECCSCCCS----SCCS-CCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred             CEEEeCCCCcC----cCCC-CCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEE
Confidence            34555555554    3443 221  35566666666665555555555566666666655555 3322335555555555


Q ss_pred             EcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEcc
Q 042884          205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLS  284 (614)
Q Consensus       205 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls  284 (614)
                      ++++|.++ .++...                                                    +..+++|++|+++
T Consensus        86 ~L~~n~l~-~~~~~~----------------------------------------------------~~~l~~L~~L~Ls  112 (477)
T 2id5_A           86 GLRSNRLK-LIPLGV----------------------------------------------------FTGLSNLTKLDIS  112 (477)
T ss_dssp             ECCSSCCC-SCCTTS----------------------------------------------------STTCTTCCEEECT
T ss_pred             ECCCCcCC-ccCccc----------------------------------------------------ccCCCCCCEEECC
Confidence            55555544 222222                                                    3345566666666


Q ss_pred             CCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCC
Q 042884          285 HTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG  364 (614)
Q Consensus       285 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~  364 (614)
                      +|.+.+..+.. |..+++|++|++++|.+.++.+..|..+++|+.|++++|.++ .++...+..+++|+.|++++|.+.+
T Consensus       113 ~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          113 ENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCccccCChhH-ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcE
Confidence            66665333333 667777777788777777777777888888899999998887 6776666668999999999999988


Q ss_pred             CCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCC
Q 042884          365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ  444 (614)
Q Consensus       365 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  444 (614)
                      ..+..|..+++|+.|++++|...+.+|...+.                   ..+|++|++++|++++..+..|..+++|+
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  251 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLR  251 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred             eChhhcccCcccceeeCCCCccccccCccccc-------------------CccccEEECcCCcccccCHHHhcCccccC
Confidence            88888889999999999998877677766542                   23566677777777756557899999999


Q ss_pred             EEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCc
Q 042884          445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNT  524 (614)
Q Consensus       445 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~  524 (614)
                      +|+|++|.+++..+..|..+++|++|++++|++.+..|..|..+++|+.|++++|++++..+..+..+++++.+++++||
T Consensus       252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence            99999999999999999999999999999999999999999999999999999999998877778889999999999999


Q ss_pred             CCCCCCC
Q 042884          525 FLCGLPL  531 (614)
Q Consensus       525 ~~c~~~~  531 (614)
                      +.|+|+.
T Consensus       332 l~c~c~~  338 (477)
T 2id5_A          332 LACDCRL  338 (477)
T ss_dssp             EECSGGG
T ss_pred             ccCccch
Confidence            9999864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.7e-36  Score=313.16  Aligned_cols=357  Identities=17%  Similarity=0.177  Sum_probs=246.8

Q ss_pred             ccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCC
Q 042884           13 SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFP   92 (614)
Q Consensus        13 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~   92 (614)
                      +++++++|++|++++|.++++     +.+..+++|++|++++|.+.+                         ++    ++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-----~~l~~l~~L~~L~Ls~n~l~~-------------------------~~----~~   82 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-----TGIEKLTGLTKLICTSNNITT-------------------------LD----LS   82 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-----TTGGGCTTCSEEECCSSCCSC-------------------------CC----CT
T ss_pred             ChhHcCCCCEEEccCCCcccC-----hhhcccCCCCEEEccCCcCCe-------------------------Ec----cc
Confidence            445555666666666655543     245555555555555555442                         11    45


Q ss_pred             CCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccC
Q 042884           93 HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVAN  172 (614)
Q Consensus        93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  172 (614)
                      .+++|++|++++|.+++   ++  +.. +++|++|++++|.+++    ++   +..+++|++|++++|++++. +  +..
T Consensus        83 ~l~~L~~L~Ls~N~l~~---~~--~~~-l~~L~~L~L~~N~l~~----l~---~~~l~~L~~L~l~~N~l~~l-~--l~~  146 (457)
T 3bz5_A           83 QNTNLTYLACDSNKLTN---LD--VTP-LTKLTYLNCDTNKLTK----LD---VSQNPLLTYLNCARNTLTEI-D--VSH  146 (457)
T ss_dssp             TCTTCSEEECCSSCCSC---CC--CTT-CTTCCEEECCSSCCSC----CC---CTTCTTCCEEECTTSCCSCC-C--CTT
T ss_pred             cCCCCCEEECcCCCCce---ee--cCC-CCcCCEEECCCCcCCe----ec---CCCCCcCCEEECCCCcccee-c--ccc
Confidence            56677777777777663   22  444 7777777777777763    22   66777777777777777753 2  667


Q ss_pred             CCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcc
Q 042884          173 MTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ  252 (614)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  252 (614)
                      +++|++|++++|...+.++   +..+++|++|++++|.+++ ++   +..+++|+.|++++|.+.+.             
T Consensus       147 l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~-------------  206 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL-------------  206 (457)
T ss_dssp             CTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC-------------
T ss_pred             CCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee-------------
Confidence            7777777777775444552   5677777777777777763 33   56677777777777766532             


Q ss_pred             ceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEc
Q 042884          253 LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDV  332 (614)
Q Consensus       253 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  332 (614)
                                        .+..+++|++|++++|++.+ +|   +..+++|++|++++|.+++.+   ...+++|+.|++
T Consensus       207 ------------------~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l  261 (457)
T 3bz5_A          207 ------------------DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHC  261 (457)
T ss_dssp             ------------------CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred             ------------------ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEec
Confidence                              13356777888888888774 55   567778888888888877754   345667777777


Q ss_pred             cCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccc
Q 042884          333 SNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLE  412 (614)
Q Consensus       333 ~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  412 (614)
                      ++|               +|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|.    ....|+.+++++|   
T Consensus       262 ~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~~~---  317 (457)
T 3bz5_A          262 IQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLSQN---  317 (457)
T ss_dssp             TTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCTTC---
T ss_pred             cCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc----CCCcceEechhhc---
Confidence            654               34556677777666655  46778888889988887767764    3467777777765   


Q ss_pred             ccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 042884          413 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE  492 (614)
Q Consensus       413 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~  492 (614)
                          ++|++|++++|++++. +  ++.+++|+.|++++|+++++        +.|+.|++++|.+.+.     ..+..|+
T Consensus       318 ----~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~  377 (457)
T 3bz5_A          318 ----PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMP  377 (457)
T ss_dssp             ----TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECC
T ss_pred             ----ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecC
Confidence                5789999999999874 3  88899999999999999862        4667778999988865     2445688


Q ss_pred             eEeccCCcCcccCCcc
Q 042884          493 VFSLAFNNLSGEIPEW  508 (614)
Q Consensus       493 ~L~l~~N~l~~~~~~~  508 (614)
                      .+++++|+++|.+|..
T Consensus       378 ~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          378 KETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CBCCBTTBEEEECCTT
T ss_pred             ccccccCcEEEEcChh
Confidence            8899999999988863

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.2e-34  Score=306.18  Aligned_cols=345  Identities=24%  Similarity=0.316  Sum_probs=193.9

Q ss_pred             CCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCCC
Q 042884           17 LPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKS   96 (614)
Q Consensus        17 l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~   96 (614)
                      ++++++|+++++.++.+     +.+..+++|++|++++|.+.+..+  +.                          ++++
T Consensus        45 l~~l~~L~l~~~~i~~l-----~~~~~l~~L~~L~Ls~n~l~~~~~--~~--------------------------~l~~   91 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQLTDITP--LK--------------------------NLTK   91 (466)
T ss_dssp             HHTCCEEECCSSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GT--------------------------TCTT
T ss_pred             hccccEEecCCCCCccC-----cchhhhcCCCEEECCCCccCCchh--hh--------------------------cccc
Confidence            56677777777666543     345666677777777666553322  44                          4455


Q ss_pred             CCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCC
Q 042884           97 LEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSL  176 (614)
Q Consensus        97 L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  176 (614)
                      |++|++++|.+.+   ++. +.. +++|++|++++|.++    .+++  +..+++|++|++++|.+++. + .+..+++|
T Consensus        92 L~~L~l~~n~l~~---~~~-~~~-l~~L~~L~L~~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L  158 (466)
T 1o6v_A           92 LVDILMNNNQIAD---ITP-LAN-LTNLTGLTLFNNQIT----DIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSL  158 (466)
T ss_dssp             CCEEECCSSCCCC---CGG-GTT-CTTCCEEECCSSCCC----CCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTC
T ss_pred             CCEEECCCCcccc---Chh-hcC-CCCCCEEECCCCCCC----CChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcc
Confidence            5555555555542   222 333 555555555555554    2222  55555555555555555532 2 35555556


Q ss_pred             cEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceee
Q 042884          177 RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYL  256 (614)
Q Consensus       177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  256 (614)
                      ++|+++ |.+. .++.  +..+++|++|++++|.+.. +  ..+..+++|+.|++++|.+.+..+               
T Consensus       159 ~~L~l~-~~~~-~~~~--~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~~---------------  216 (466)
T 1o6v_A          159 QQLSFG-NQVT-DLKP--LANLTTLERLDISSNKVSD-I--SVLAKLTNLESLIATNNQISDITP---------------  216 (466)
T ss_dssp             SEEEEE-ESCC-CCGG--GTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG---------------
T ss_pred             cEeecC-Cccc-Cchh--hccCCCCCEEECcCCcCCC-C--hhhccCCCCCEEEecCCccccccc---------------
Confidence            666554 2333 2221  4555666666666665542 1  235555666666666655443211               


Q ss_pred             eccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCc
Q 042884          257 LLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN  336 (614)
Q Consensus       257 ~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  336 (614)
                                     +..+++|+.|++++|.+.+ ++.  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       217 ---------------~~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  276 (466)
T 1o6v_A          217 ---------------LGILTNLDELSLNGNQLKD-IGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ  276 (466)
T ss_dssp             ---------------GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred             ---------------ccccCCCCEEECCCCCccc-chh--hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCc
Confidence                           2335566666666666652 332  4566666666666666665443  5666677777777777


Q ss_pred             cccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccccc
Q 042884          337 FQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVL  416 (614)
Q Consensus       337 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  416 (614)
                      ++ .++.  +..+++|++|++++|++++..+  +..+++|+.|++++|++++..|   +..+++|++|++++|       
T Consensus       277 l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n-------  341 (466)
T 1o6v_A          277 IS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN-------  341 (466)
T ss_dssp             CC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS-------
T ss_pred             cC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC-------
Confidence            76 3333  3336777777777777765433  6677777777777777764333   234444444444443       


Q ss_pred             CCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC
Q 042884          417 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG  479 (614)
Q Consensus       417 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  479 (614)
                                 ++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|.+++
T Consensus       342 -----------~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          342 -----------KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             -----------CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             -----------ccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence                       33322  245666677777777777766554  6666777777777776664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-34  Score=298.59  Aligned_cols=335  Identities=20%  Similarity=0.246  Sum_probs=185.1

Q ss_pred             CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCC
Q 042884           94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM  173 (614)
Q Consensus        94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  173 (614)
                      ++++++|+++++.+.   .+|..+...+++|++|++++|.+.    .+++..|..+++|++|++++|.+++..|..|.++
T Consensus        44 l~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             GCCCSEEEEESCEES---EECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCceEEEecCCchh---hCChhHhcccccCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            355566666655554   444443322555666666555554    3443355555555555555555555555555555


Q ss_pred             CCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccc
Q 042884          174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQL  253 (614)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  253 (614)
                      ++|++|++++|.+. .+|...|..+++|++|++++|.+. .++...+..++                             
T Consensus       117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-----------------------------  165 (390)
T 3o6n_A          117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATT-----------------------------  165 (390)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCT-----------------------------
T ss_pred             CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCC-----------------------------
Confidence            55555555555555 455544555555555555555554 22223344444                             


Q ss_pred             eeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEcc
Q 042884          254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVS  333 (614)
Q Consensus       254 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  333 (614)
                                             +|++|++++|.+.+ ++   +..+++|++|++++|.+.+.     ...++|+.|+++
T Consensus       166 -----------------------~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~  213 (390)
T 3o6n_A          166 -----------------------SLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDAS  213 (390)
T ss_dssp             -----------------------TCCEEECCSSCCSB-CC---GGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECC
T ss_pred             -----------------------CCCEEECCCCcCCc-cc---cccccccceeeccccccccc-----CCCCcceEEECC
Confidence                                   44445554444442 22   23445555555555544432     122356666666


Q ss_pred             CCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc
Q 042884          334 NNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG  413 (614)
Q Consensus       334 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  413 (614)
                      +|.+. .+|...   .++|++|++++|.+++.  ..+..+++|++|++++|.+++..|.. +..+++|++|++++|    
T Consensus       214 ~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n----  282 (390)
T 3o6n_A          214 HNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNN----  282 (390)
T ss_dssp             SSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECCSS----
T ss_pred             CCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEECCCC----
Confidence            66665 333322   35666666666666643  45666666777777777666333332 334444444433333    


Q ss_pred             cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCe
Q 042884          414 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV  493 (614)
Q Consensus       414 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~  493 (614)
                                    ++++ +|..+..+++|++|++++|++++ +|..+..+++|++|++++|+++.. |  +..+++|+.
T Consensus       283 --------------~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~  343 (390)
T 3o6n_A          283 --------------RLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN  343 (390)
T ss_dssp             --------------CCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred             --------------cCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence                          3332 23334566777888888887774 345566777888888888887744 3  566778888


Q ss_pred             EeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          494 FSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       494 L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      |++++|++.+....  ..+..+....+.+++..|.++
T Consensus       344 L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          344 LTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             EECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred             EEcCCCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence            88888888764322  223445555566777777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1e-33  Score=296.62  Aligned_cols=355  Identities=18%  Similarity=0.198  Sum_probs=189.1

Q ss_pred             CCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccc
Q 042884           91 FPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV  170 (614)
Q Consensus        91 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  170 (614)
                      ++++++|++|++++|.+.+   +| .+.. +++|++|++++|.+++    ++   ++.+++|++|++++|++++. +  +
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~---~~-~l~~-l~~L~~L~Ls~n~l~~----~~---~~~l~~L~~L~Ls~N~l~~~-~--~  102 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITD---MT-GIEK-LTGLTKLICTSNNITT----LD---LSQNTNLTYLACDSNKLTNL-D--V  102 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCC---CT-TGGG-CTTCSEEECCSSCCSC----CC---CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred             hhHcCCCCEEEccCCCccc---Ch-hhcc-cCCCCEEEccCCcCCe----Ec---cccCCCCCEEECcCCCCcee-e--c
Confidence            3344455555555554442   22 2333 4555555555555442    11   44455555555555555432 2  4


Q ss_pred             cCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCC
Q 042884          171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN  250 (614)
Q Consensus       171 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  250 (614)
                      .++++|++|++++|++. .++   ++.+++|++|++++|.+++ +   .+..+++|+.|++++|...+..+     ....
T Consensus       103 ~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~~-----~~~l  169 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKLD-----VTPQ  169 (457)
T ss_dssp             TTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCCC-----CTTC
T ss_pred             CCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCcccccc-----cccC
Confidence            45555555555555554 232   4445555555555555442 1   13444455555555443211100     0000


Q ss_pred             ccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEE
Q 042884          251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQL  330 (614)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  330 (614)
                      .+|+.|++ +++...+ +|  +..+++|+.|++++|.+++ ++   +..+++|++|++++|++++++   +..+++|+.|
T Consensus       170 ~~L~~L~l-s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L  238 (457)
T 3bz5_A          170 TQLTTLDC-SFNKITE-LD--VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYF  238 (457)
T ss_dssp             TTCCEEEC-CSSCCCC-CC--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEE
T ss_pred             CcCCEEEC-CCCccce-ec--cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccccC---ccccCCCCEE
Confidence            01111111 0000000 11  2344455555555555542 22   344555555555555555421   4445555555


Q ss_pred             EccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCc
Q 042884          331 DVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS  410 (614)
Q Consensus       331 ~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  410 (614)
                      ++++|.+++ +|.   ..+++|+.|++++|              +|+.|++++|.+.+.+|.   ..+++|+.|++++|.
T Consensus       239 ~l~~N~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~  297 (457)
T 3bz5_A          239 DCSVNPLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNT  297 (457)
T ss_dssp             ECCSSCCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCT
T ss_pred             EeeCCcCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc---cccccCCEEECCCCc
Confidence            555555542 221   11444555554443              355667777776666663   567888888888887


Q ss_pred             ccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 042884          411 LEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT  490 (614)
Q Consensus       411 l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~  490 (614)
                      ..+..+       .+.+.++..   .++++++|++|++++|++++. +  ++.+++|+.|++++|++++        ++.
T Consensus       298 ~l~~l~-------~~~~~L~~L---~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~  356 (457)
T 3bz5_A          298 QLYLLD-------CQAAGITEL---DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSS  356 (457)
T ss_dssp             TCCEEE-------CTTCCCSCC---CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTT
T ss_pred             ccceec-------cCCCcceEe---chhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccc
Confidence            654322       233333322   255668999999999999985 2  8899999999999999985        256


Q ss_pred             CCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884          491 LEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       491 L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      |+.|++++|.+++.     ..+..+..++++.|.+....|.
T Consensus       357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             cccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence            77888999999876     3456677888888887655443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.7e-34  Score=293.54  Aligned_cols=318  Identities=19%  Similarity=0.209  Sum_probs=215.2

Q ss_pred             CCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCcc
Q 042884          148 SLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLK  227 (614)
Q Consensus       148 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  227 (614)
                      .+++++.|++++|.++...+..|..+++|++|++++|.+. .++...|..+++|++|++++|.+. .++...+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence            3578888888888887555555778888888888888887 566556788888888888888776 33334566666666


Q ss_pred             EEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEE
Q 042884          228 IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLF  307 (614)
Q Consensus       228 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~  307 (614)
                      .|++++|.+.....                            ..+..+++|++|++++|.+.+..+. .+..+++|++|+
T Consensus       121 ~L~L~~n~l~~l~~----------------------------~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~  171 (390)
T 3o6n_A          121 VLVLERNDLSSLPR----------------------------GIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQ  171 (390)
T ss_dssp             EEECCSSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEE
T ss_pred             EEECCCCccCcCCH----------------------------HHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEE
Confidence            66666665542211                            1234455666666666666533232 245556666666


Q ss_pred             ccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccC
Q 042884          308 LVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLT  387 (614)
Q Consensus       308 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  387 (614)
                      +++|.+++.   .+..+++|+.|++++|.++ .++     ..++|++|++++|.+... |..  ..++|+.|++++|.++
T Consensus       172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-~~~-----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~  239 (390)
T 3o6n_A          172 LSSNRLTHV---DLSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLT  239 (390)
T ss_dssp             CCSSCCSBC---CGGGCTTCSEEECCSSCCS-EEE-----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCC
T ss_pred             CCCCcCCcc---ccccccccceeeccccccc-ccC-----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCc
Confidence            666655543   2344455555555555554 111     134455555555555432 111  1245555555555554


Q ss_pred             CcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCC
Q 042884          388 GEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI  467 (614)
Q Consensus       388 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  467 (614)
                      + .+  .+                  ..+++|++|++++|.+++..|..|..+++|++|++++|++++. |..+..+++|
T Consensus       240 ~-~~--~l------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L  297 (390)
T 3o6n_A          240 D-TA--WL------------------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTL  297 (390)
T ss_dssp             C-CG--GG------------------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTC
T ss_pred             c-cH--HH------------------cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCC
Confidence            2 11  11                  2356777888888888878889999999999999999999865 5566889999


Q ss_pred             CEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCCCCC
Q 042884          468 ESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC  534 (614)
Q Consensus       468 ~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~c  534 (614)
                      ++|++++|++. .+|..+..+++|++|++++|+++.. +  +..+++++.+++++||+.|+|....+
T Consensus       298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~  360 (390)
T 3o6n_A          298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALF  360 (390)
T ss_dssp             CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred             CEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHH
Confidence            99999999999 5677788899999999999999854 3  56788999999999999998755433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.7e-33  Score=282.01  Aligned_cols=304  Identities=23%  Similarity=0.322  Sum_probs=179.9

Q ss_pred             CCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCC
Q 042884          121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTS  200 (614)
Q Consensus       121 l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  200 (614)
                      +++|++|+++++.+.    .++  ++..+++|++|++++|++++..+  +..+++|++|++++|.+. .++.  +..+++
T Consensus        43 l~~L~~L~l~~~~i~----~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~  111 (347)
T 4fmz_A           43 LESITKLVVAGEKVA----SIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTN  111 (347)
T ss_dssp             HTTCSEEECCSSCCC----CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred             cccccEEEEeCCccc----cch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence            667777777777665    333  36667777777777777764333  667777777777777766 4442  666777


Q ss_pred             CCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcE
Q 042884          201 IEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEY  280 (614)
Q Consensus       201 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~  280 (614)
                      |++|++++|.+.. ++  .+..+++|+.|++++|.....                             +..+..+++|++
T Consensus       112 L~~L~l~~n~i~~-~~--~~~~l~~L~~L~l~~n~~~~~-----------------------------~~~~~~l~~L~~  159 (347)
T 4fmz_A          112 LRELYLNEDNISD-IS--PLANLTKMYSLNLGANHNLSD-----------------------------LSPLSNMTGLNY  159 (347)
T ss_dssp             CSEEECTTSCCCC-CG--GGTTCTTCCEEECTTCTTCCC-----------------------------CGGGTTCTTCCE
T ss_pred             CCEEECcCCcccC-ch--hhccCCceeEEECCCCCCccc-----------------------------ccchhhCCCCcE
Confidence            7777777776652 22  255666666666666532211                             122455666777


Q ss_pred             EEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCC
Q 042884          281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMN  360 (614)
Q Consensus       281 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n  360 (614)
                      |++++|.+.+ ++.  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+. .++.  +..+++|++|++++|
T Consensus       160 L~l~~~~~~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          160 LTVTESKVKD-VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNN  231 (347)
T ss_dssp             EECCSSCCCC-CGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSS
T ss_pred             EEecCCCcCC-chh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCC
Confidence            7777766653 332  4566666666666666665433  555666666666666665 2322  223566666666666


Q ss_pred             cCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCC
Q 042884          361 ALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNL  440 (614)
Q Consensus       361 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  440 (614)
                      .+++..+  +..+++|++|++++|.++ .++.  +..                  +++|++|++++|++++.  ..+..+
T Consensus       232 ~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~------------------l~~L~~L~l~~n~l~~~--~~~~~l  286 (347)
T 4fmz_A          232 KITDLSP--LANLSQLTWLEIGTNQIS-DINA--VKD------------------LTKLKMLNVGSNQISDI--SVLNNL  286 (347)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTT------------------CTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             ccCCCcc--hhcCCCCCEEECCCCccC-CChh--Hhc------------------CCCcCEEEccCCccCCC--hhhcCC
Confidence            6654332  555666666666666555 2221  222                  33444444455555433  346666


Q ss_pred             CcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCc
Q 042884          441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS  502 (614)
Q Consensus       441 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  502 (614)
                      ++|++|++++|++++..+..+..+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            777777777777776666667777777777777777765544  666777777777777664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.5e-33  Score=305.04  Aligned_cols=335  Identities=20%  Similarity=0.247  Sum_probs=185.5

Q ss_pred             CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCC
Q 042884           94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM  173 (614)
Q Consensus        94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  173 (614)
                      +++++.++++++.+.   .+|..+...+++|++|++++|.+.    .+++..|..+++|++|++++|.+++..|..|.++
T Consensus        50 l~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             GCCCSEEEESSCEES---EECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            344555555555544   344333222555555555555544    2333345555555555555555554444445555


Q ss_pred             CCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccc
Q 042884          174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQL  253 (614)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  253 (614)
                      ++|++|+|++|.+. .+|...|+.+++|++|++++|.+.+ ++...+.                                
T Consensus       123 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~--------------------------------  168 (597)
T 3oja_B          123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQ--------------------------------  168 (597)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTT--------------------------------
T ss_pred             CCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC-CChhhhh--------------------------------
Confidence            55555555555554 4444444455555555555554442 2222333                                


Q ss_pred             eeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEcc
Q 042884          254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVS  333 (614)
Q Consensus       254 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  333 (614)
                                          .+++|+.|++++|.+.+ ++   +..+++|+.|++++|.+.+.     ...++|+.|+++
T Consensus       169 --------------------~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls  219 (597)
T 3oja_B          169 --------------------ATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDAS  219 (597)
T ss_dssp             --------------------TCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECC
T ss_pred             --------------------cCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCccccc-----cCCchhheeecc
Confidence                                44455555555555542 22   23455555555555555432     223456666666


Q ss_pred             CCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc
Q 042884          334 NNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG  413 (614)
Q Consensus       334 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  413 (614)
                      +|.+. .++...   .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|..+ ..+++|+.|++++     
T Consensus       220 ~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~-----  287 (597)
T 3oja_B          220 HNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISN-----  287 (597)
T ss_dssp             SSCCC-EEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTT-----
T ss_pred             CCccc-cccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCC-----
Confidence            66665 333322   35677777777776642  556667777777777777764434333 3444444443333     


Q ss_pred             cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCe
Q 042884          414 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV  493 (614)
Q Consensus       414 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~  493 (614)
                                   |.+++ +|..+..+++|++|+|++|.+++ +|..+..+++|+.|++++|.+.+. |  +..+++|+.
T Consensus       288 -------------N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~  349 (597)
T 3oja_B          288 -------------NRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN  349 (597)
T ss_dssp             -------------SCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred             -------------CCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCE
Confidence                         33332 23445567788888888888874 455667788888888888888754 2  566788889


Q ss_pred             EeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          494 FSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       494 L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      |++++|++.|....  ..+..+....+.+++..|..+
T Consensus       350 L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          350 LTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             EECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred             EEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence            99999988865332  223445555567777777653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.5e-32  Score=274.72  Aligned_cols=308  Identities=25%  Similarity=0.355  Sum_probs=255.2

Q ss_pred             CCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCcc
Q 042884           90 GFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWC  169 (614)
Q Consensus        90 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~  169 (614)
                      .+..+++|++|+++++.+.   .++. +.. +++|++|++++|.++    .+++  +..+++|++|++++|.+++.  .+
T Consensus        39 ~~~~l~~L~~L~l~~~~i~---~~~~-~~~-~~~L~~L~l~~n~i~----~~~~--~~~l~~L~~L~L~~n~i~~~--~~  105 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA---SIQG-IEY-LTNLEYLNLNGNQIT----DISP--LSNLVKLTNLYIGTNKITDI--SA  105 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC---CCTT-GGG-CTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred             cchhcccccEEEEeCCccc---cchh-hhh-cCCccEEEccCCccc----cchh--hhcCCcCCEEEccCCcccCc--hH
Confidence            3567899999999999987   4443 666 999999999999998    4554  89999999999999999853  46


Q ss_pred             ccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCC
Q 042884          170 VANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTP  249 (614)
Q Consensus       170 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  249 (614)
                      +..+++|++|++++|.+. .++.  +..+++|++|++++|.....+  ..+..+++|+.|++++|.+....         
T Consensus       106 ~~~l~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---------  171 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVT---------  171 (347)
T ss_dssp             GTTCTTCSEEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCG---------
T ss_pred             HcCCCcCCEEECcCCccc-Cchh--hccCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCch---------
Confidence            999999999999999998 5655  789999999999999665343  34889999999999998875431         


Q ss_pred             CccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCE
Q 042884          250 NFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQ  329 (614)
Q Consensus       250 ~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  329 (614)
                                           .+..+++|++|++++|.+. .++.  +..+++|+.|++++|.+.+..+  +..+++|++
T Consensus       172 ---------------------~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~  225 (347)
T 4fmz_A          172 ---------------------PIANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNS  225 (347)
T ss_dssp             ---------------------GGGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred             ---------------------hhccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCE
Confidence                                 1557889999999999998 4554  7889999999999999998655  788999999


Q ss_pred             EEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCC
Q 042884          330 LDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN  409 (614)
Q Consensus       330 L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  409 (614)
                      |++++|.++ .++.  +..+++|++|++++|.+++.  ..+..+++|++|++++|.++ .++.  +..            
T Consensus       226 L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--~~~------------  285 (347)
T 4fmz_A          226 LKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-DISV--LNN------------  285 (347)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCGG--GGG------------
T ss_pred             EEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC-CChh--hcC------------
Confidence            999999998 5555  44599999999999999864  56899999999999999998 4432  333            


Q ss_pred             cccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCC
Q 042884          410 SLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN  478 (614)
Q Consensus       410 ~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  478 (614)
                            +++|+.|++++|++++..+..+..+++|++|++++|++++..|  +..+++|++|++++|.|+
T Consensus       286 ------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          286 ------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence                  4556666666677776777889999999999999999997766  888999999999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.1e-33  Score=301.46  Aligned_cols=313  Identities=19%  Similarity=0.203  Sum_probs=201.0

Q ss_pred             CCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEE
Q 042884          150 MHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF  229 (614)
Q Consensus       150 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  229 (614)
                      ++++.+++++|.+....+..|..+++|++|++++|.+. .++...|..+++|++|++++|.+.+ ++...|.++++|+.|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVL  128 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEE
Confidence            34445555555544333334444555555555555554 3333334555555555555555442 222334444444444


Q ss_pred             EccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEcc
Q 042884          230 DAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLV  309 (614)
Q Consensus       230 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~  309 (614)
                      ++++|.+....                            +..+..+++|++|++++|.+.+..|.. |..+++|++|+++
T Consensus       129 ~L~~n~l~~l~----------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~  179 (597)
T 3oja_B          129 VLERNDLSSLP----------------------------RGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLS  179 (597)
T ss_dssp             ECCSSCCCCCC----------------------------TTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECT
T ss_pred             EeeCCCCCCCC----------------------------HHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECc
Confidence            44444433211                            122345667777777777777444433 6667777777777


Q ss_pred             CCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCc
Q 042884          310 NDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE  389 (614)
Q Consensus       310 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  389 (614)
                      +|.+.+.   .+..+++|+.|++++|.+++ ++     ..++|+.|++++|.+....+..   .++|+.|++++|.+++ 
T Consensus       180 ~N~l~~~---~~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~-  246 (597)
T 3oja_B          180 SNRLTHV---DLSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD-  246 (597)
T ss_dssp             TSCCSBC---CGGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC-
T ss_pred             CCCCCCc---ChhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC-
Confidence            7776654   24455666777777766652 21     1455666666666665332221   2456666666666653 


Q ss_pred             CCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCE
Q 042884          390 IPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES  469 (614)
Q Consensus       390 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  469 (614)
                      . .. +.                  .+++|+.|+|++|.+++..|..|..+++|+.|+|++|.++++ |..+..+++|+.
T Consensus       247 ~-~~-l~------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~  305 (597)
T 3oja_B          247 T-AW-LL------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKV  305 (597)
T ss_dssp             C-GG-GG------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCE
T ss_pred             C-hh-hc------------------cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcE
Confidence            1 11 12                  356677777888888888889999999999999999999975 666788999999


Q ss_pred             EEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884          470 LDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       470 L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      |++++|.+. .+|..+..+++|+.|++++|++++..   +..++.++.+++++|||.|+|..
T Consensus       306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~  363 (597)
T 3oja_B          306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR  363 (597)
T ss_dssp             EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH
Confidence            999999999 67888889999999999999998653   45678999999999999998744

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.9e-33  Score=278.99  Aligned_cols=252  Identities=31%  Similarity=0.542  Sum_probs=175.7

Q ss_pred             CCcEEEccCCCCCC--CCChhHHhcCCCccEEEccC-CCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          277 DLEYVDLSHTKMNG--EFPNWLLENNTKLKTLFLVN-DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       277 ~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      +++.|++++|.+.+  .+|.. +..+++|++|++++ |.+.+..+..+..+++|++|++++|.+++.+|..+.. +++|+
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~  128 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCC
T ss_pred             eEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCC
Confidence            44555555555554  44443 44555555555552 5555444444555555555555555555444444433 55555


Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCC-CCCEEEccCCcccccc------cCCccEEEcCC
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCV-YLDFLALSNNSLEGKV------LSLLSGLDLSC  426 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~------~~~L~~L~L~~  426 (614)
                      +|++++|.+++..|..+..+++|++|++++|++++.+|..+. .++ .|++|++++|++++..      ++ |++|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            555555555555555555555555555555555544554442 333 5555555555554321      23 88888888


Q ss_pred             CcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          427 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       427 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      |++++..|..|..+++|++|++++|.+++.++. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            888888999999999999999999999977666 8889999999999999999999999999999999999999999999


Q ss_pred             ccccccCCcCcccccCCcCCCCCCCCCC
Q 042884          507 EWKAQFATFNESSYEGNTFLCGLPLPIC  534 (614)
Q Consensus       507 ~~~~~~~~l~~~~~~~n~~~c~~~~~~c  534 (614)
                      .. ..+++++.+++.+||+.|+.|.+.|
T Consensus       286 ~~-~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             CC-ccccccChHHhcCCCCccCCCCCCC
Confidence            85 8899999999999999999888777

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=2.3e-30  Score=260.65  Aligned_cols=200  Identities=18%  Similarity=0.240  Sum_probs=129.9

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCC--CCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAG--PFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      ++|++|++++|.+. .++...+..+++|++|++++|.+..  ..+..+..+++|+.|++++|.++ .+|...   .++|+
T Consensus       121 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~  195 (330)
T 1xku_A          121 KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLT  195 (330)
T ss_dssp             TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCS
T ss_pred             ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCC
Confidence            35666666666666 3444446667777777777776643  44555667777777777777776 566544   26777


Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccC
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHI  433 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~  433 (614)
                      +|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++                  |++|++++|+++ .+
T Consensus       196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~------------------L~~L~L~~N~l~-~l  255 (330)
T 1xku_A          196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPH------------------LRELHLNNNKLV-KV  255 (330)
T ss_dssp             EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTT------------------CCEEECCSSCCS-SC
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeChhhccCCCC------------------CCEEECCCCcCc-cC
Confidence            8888888777777777777788888888888776 344333333333                  444444444444 45


Q ss_pred             CccccCCCcCCEEECcCCcCCCCCCcCCCCC------CCCCEEEccCCcCCC--CCcccccCCCCCCeEeccCCc
Q 042884          434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL------KHIESLDLSYNKLNG--KIPHQLVELKTLEVFSLAFNN  500 (614)
Q Consensus       434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~  500 (614)
                      |..+..+++|++|++++|++++..+..|...      ++++.|++++|.+..  +.|..|..++.++.+++++|+
T Consensus       256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            5667777788888888888877766666533      677778888887753  556677777777777777774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.5e-30  Score=262.17  Aligned_cols=288  Identities=17%  Similarity=0.218  Sum_probs=193.3

Q ss_pred             CCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEE
Q 042884          151 HLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFD  230 (614)
Q Consensus       151 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  230 (614)
                      +++.++++++.++ .+|..+.  ++|+.|++++|.+. .++...|..+++|++|++++|.++ .+....+..+++|+.|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence            4666666666665 4444432  46666666666666 444444666666666666666665 33334566666677777


Q ss_pred             ccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccC
Q 042884          231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN  310 (614)
Q Consensus       231 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~  310 (614)
                      +++|.+...                             |..+.  ++|++|++++|.+. .+|...|..+++|++|++++
T Consensus       109 L~~n~l~~l-----------------------------~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~  156 (332)
T 2ft3_A          109 ISKNHLVEI-----------------------------PPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGG  156 (332)
T ss_dssp             CCSSCCCSC-----------------------------CSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCS
T ss_pred             CCCCcCCcc-----------------------------Ccccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCC
Confidence            666665422                             11111  57777777777777 45544477788888888888


Q ss_pred             CCCCC--CCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCC
Q 042884          311 DSLAG--PFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTG  388 (614)
Q Consensus       311 n~i~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  388 (614)
                      |.+..  ..+..+..+ +|+.|++++|.++ .+|..+   .++|++|++++|.+++..+..+..+++|++|++++|.++ 
T Consensus       157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-  230 (332)
T 2ft3_A          157 NPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-  230 (332)
T ss_dssp             CCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-
T ss_pred             CccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-
Confidence            87753  556667667 8888888888887 577654   367888888888888777788888888888888888887 


Q ss_pred             cCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCC----
Q 042884          389 EIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL----  464 (614)
Q Consensus       389 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l----  464 (614)
                      .++...+..+++|                  ++|++++|+++ .+|..+..+++|++|++++|++++..+..|...    
T Consensus       231 ~~~~~~~~~l~~L------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  291 (332)
T 2ft3_A          231 MIENGSLSFLPTL------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV  291 (332)
T ss_dssp             CCCTTGGGGCTTC------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred             cCChhHhhCCCCC------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence            4444444444444                  44444445555 556667788888888888888887777766553    


Q ss_pred             --CCCCEEEccCCcCC--CCCcccccCCCCCCeEeccCCc
Q 042884          465 --KHIESLDLSYNKLN--GKIPHQLVELKTLEVFSLAFNN  500 (614)
Q Consensus       465 --~~L~~L~ls~N~l~--~~~~~~l~~l~~L~~L~l~~N~  500 (614)
                        ++|+.|++++|.+.  ...|..|..++.|+.+++++|+
T Consensus       292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence              56788888888776  5677777778888888887774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.3e-30  Score=260.62  Aligned_cols=251  Identities=18%  Similarity=0.274  Sum_probs=158.0

Q ss_pred             CCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCC
Q 042884           95 KSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMT  174 (614)
Q Consensus        95 ~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  174 (614)
                      .+++.++++++.+.   .+|..+   .+++++|++++|.++    .+++..|.++++|++|++++|++++..|.+|.+++
T Consensus        31 c~l~~l~~~~~~l~---~lp~~~---~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (330)
T 1xku_A           31 CHLRVVQCSDLGLE---KVPKDL---PPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV  100 (330)
T ss_dssp             EETTEEECTTSCCC---SCCCSC---CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CCCeEEEecCCCcc---ccCccC---CCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence            36777787777766   555543   357788888888877    45555678888888888888888877788888888


Q ss_pred             CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccce
Q 042884          175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQ  254 (614)
Q Consensus       175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~  254 (614)
                      +|++|++++|.+. .+|...+   ++|++|++++|.+. .++...+..+++|+.|++++|.+...               
T Consensus       101 ~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---------------  160 (330)
T 1xku_A          101 KLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSS---------------  160 (330)
T ss_dssp             TCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGG---------------
T ss_pred             CCCEEECCCCcCC-ccChhhc---ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCcc---------------
Confidence            8888888888887 6776533   67888888888776 44445567777777777777765431               


Q ss_pred             eeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccC
Q 042884          255 YLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSN  334 (614)
Q Consensus       255 ~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  334 (614)
                                 +..+..+..+++|++|++++|.+. .+|..+   .++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus       161 -----------~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          161 -----------GIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             -----------GBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             -----------CcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence                       112334556667777777777766 445432   25566666666666555555555555566666665


Q ss_pred             CccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCch
Q 042884          335 NNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEH  393 (614)
Q Consensus       335 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  393 (614)
                      |.+++ ++...+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .++..
T Consensus       226 n~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~~~  281 (330)
T 1xku_A          226 NSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSN  281 (330)
T ss_dssp             SCCCE-ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTT
T ss_pred             CcCce-eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC-ccChh
Confidence            55553 22222223555555555555555 34444555555555555555555 34433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.2e-30  Score=260.98  Aligned_cols=251  Identities=21%  Similarity=0.287  Sum_probs=185.1

Q ss_pred             CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCC
Q 042884           96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTS  175 (614)
Q Consensus        96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  175 (614)
                      +++.++++++.+.   .+|..+   .++|++|++++|.+.    .+++..|.++++|++|++++|++++..|.+|.++++
T Consensus        34 ~l~~l~~~~~~l~---~ip~~~---~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  103 (332)
T 2ft3_A           34 HLRVVQCSDLGLK---AVPKEI---SPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK  103 (332)
T ss_dssp             ETTEEECCSSCCS---SCCSCC---CTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred             cCCEEECCCCCcc---ccCCCC---CCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence            5788888888876   566654   468888999988887    565557888999999999999998877888999999


Q ss_pred             CcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884          176 LRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY  255 (614)
Q Consensus       176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  255 (614)
                      |++|++++|.+. .+|...+   ++|++|++++|.+. .++...+..+++|+.|++++|.+....               
T Consensus       104 L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------  163 (332)
T 2ft3_A          104 LQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG---------------  163 (332)
T ss_dssp             CCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG---------------
T ss_pred             CCEEECCCCcCC-ccCcccc---ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCC---------------
Confidence            999999999988 7777533   78899999999887 555566788888888888888775321               


Q ss_pred             eeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCC
Q 042884          256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN  335 (614)
Q Consensus       256 L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  335 (614)
                                 ..|..+..+ +|+.|++++|.+. .+|..+   .++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus       164 -----------~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          164 -----------FEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN  227 (332)
T ss_dssp             -----------SCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred             -----------CCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence                       112334444 7888888888887 466542   267777888888877777677777777888888877


Q ss_pred             ccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhh
Q 042884          336 NFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLA  395 (614)
Q Consensus       336 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  395 (614)
                      .++ .++...+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .++...|
T Consensus       228 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~  284 (332)
T 2ft3_A          228 QIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDF  284 (332)
T ss_dssp             CCC-CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC-BCCTTSS
T ss_pred             cCC-cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC-ccChhHc
Confidence            777 344433344777777777777777 55666777777777777777776 5554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5.7e-34  Score=301.22  Aligned_cols=366  Identities=19%  Similarity=0.172  Sum_probs=209.0

Q ss_pred             CCCCEEeCcCcccCCCcchhhH-hhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccc-cC
Q 042884           95 KSLEHLNMERARIAPNTSFLQI-IGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-AN  172 (614)
Q Consensus        95 ~~L~~L~l~~n~l~~~~~~~~~-l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~  172 (614)
                      ++|++|+++++.++.  ..... +.. +++|++|++++|.+++......+..+..+++|++|++++|.+++..+..+ ..
T Consensus         3 ~~l~~L~Ls~~~l~~--~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            3 LDIQSLDIQCEELSD--ARWAELLPL-LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEEESCCCCH--HHHHHHHHH-HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             ccceehhhhhcccCc--hhHHHHHhh-cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence            457778888887763  22233 344 78888888888877631111222356777888888888888775444333 23


Q ss_pred             CC----CCcEEEcccCCCCC----ccCCCCCCCCCCCCEEEcccCcCccccCc----ccccCCCCccEEEccCCcccccc
Q 042884          173 MT----SLRILDVSSNQLTG----SIASSPLAHLTSIEELHLSDNHFRIPISL----EPLFNHSRLKIFDAENNELNAEI  240 (614)
Q Consensus       173 l~----~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~  240 (614)
                      ++    +|++|++++|.+.+    .++. .+..+++|++|++++|.+......    ......++|+.|++++|.+....
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence            44    68888888887762    2333 367778888888888877522110    11223456777777777665432


Q ss_pred             cccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHH----hcCCCccEEEccCCCCCCC
Q 042884          241 TESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLL----ENNTKLKTLFLVNDSLAGP  316 (614)
Q Consensus       241 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~~~~~L~~L~l~~n~i~~~  316 (614)
                      ..                        .++..+..+++|++|++++|.+.+..+..+.    ...++|++|++++|.++..
T Consensus       159 ~~------------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  214 (461)
T 1z7x_W          159 CE------------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD  214 (461)
T ss_dssp             HH------------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred             HH------------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence            11                        1234455667888888888877643332221    2355777777777777653


Q ss_pred             C----CCCCCCCCccCEEEccCCccccCCC----hhhhhcCCCccEEEccCCcCCCC----CccchhccccCcEEEccCC
Q 042884          317 F----RLPIHSHKRLRQLDVSNNNFQGHIP----LEIGDILPNLISFNISMNALDGS----IPSSFGNINLLKILDLSNN  384 (614)
Q Consensus       317 ~----~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n  384 (614)
                      .    +..+..+++|++|++++|.+++...    ...+..+++|++|++++|.++..    ++..+..+++|++|++++|
T Consensus       215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence            1    2334456777777777777653211    22222356777777777777643    4555666777777777777


Q ss_pred             ccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCcc----CCccccCCCcCCEEECcCCcCCCCCCcC
Q 042884          385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH----IPPQIGNLTRIQTLNLSHNNLTGLIPST  460 (614)
Q Consensus       385 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~  460 (614)
                      .+.+..+..+...+.              ...++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..
T Consensus       295 ~i~~~~~~~l~~~l~--------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  360 (461)
T 1z7x_W          295 ELGDEGARLLCETLL--------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE  360 (461)
T ss_dssp             CCHHHHHHHHHHHHT--------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred             CCchHHHHHHHHHhc--------------cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence            765332222211110              0113444444444444432    2334445566666666666555432222


Q ss_pred             CC-----CCCCCCEEEccCCcCCC----CCcccccCCCCCCeEeccCCcCc
Q 042884          461 FS-----NLKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSLAFNNLS  502 (614)
Q Consensus       461 ~~-----~l~~L~~L~ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~  502 (614)
                      +.     ..++|++|++++|.+++    .+|..+..+++|++|++++|+++
T Consensus       361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            22     14566666666666653    44555555666666666666655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=2.5e-29  Score=263.39  Aligned_cols=266  Identities=23%  Similarity=0.263  Sum_probs=181.0

Q ss_pred             CcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEc
Q 042884          278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI  357 (614)
Q Consensus       278 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L  357 (614)
                      ...++.++..+. .+|..+   .++++.|++++|.+..+.+..|..+++|++|++++|.++ .++...+..+++|++|+|
T Consensus        45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence            445666666665 555432   245666666666666666666666666666666666665 444444444666666666


Q ss_pred             cCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-------cccCCccEEEcCCCcCC
Q 042884          358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-------KVLSLLSGLDLSCNKLI  430 (614)
Q Consensus       358 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~L~~L~L~~n~l~  430 (614)
                      ++|+++...+..|..+++|++|++++|.+. .+|...|..+++|++|++++|+..+       ..+++|++|++++|+++
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            666666555556666666666666666666 5555556666666666666643221       23566777777777776


Q ss_pred             ccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccc
Q 042884          431 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKA  510 (614)
Q Consensus       431 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~  510 (614)
                      . +| .+..+++|++|+|++|++++..|..|.++++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+.
T Consensus       199 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          199 E-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             S-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred             c-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence            3 33 377788888888888888888888888888888888888888888788888888888888888888877777777


Q ss_pred             ccCCcCcccccCCcCCCCCCC------------------CCCCCCCCCCCCCCCCCCCC
Q 042884          511 QFATFNESSYEGNTFLCGLPL------------------PICRSPATTPEASIGNERDD  551 (614)
Q Consensus       511 ~~~~l~~~~~~~n~~~c~~~~------------------~~c~~~~~~~~~~~~~~~~~  551 (614)
                      .+++++.+++++|||.|+|..                  ..|..|....+......+..
T Consensus       277 ~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~  335 (440)
T 3zyj_A          277 PLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQN  335 (440)
T ss_dssp             SCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----C
T ss_pred             cccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhh
Confidence            788888888888888888853                  14777776666655544433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.8e-33  Score=294.90  Aligned_cols=119  Identities=22%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             CCCCCCCCEEeCcCcccCCCcchhhHhhhcCC----CcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc
Q 042884           91 FPHFKSLEHLNMERARIAPNTSFLQIIGESTP----SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL  166 (614)
Q Consensus        91 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~----~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~  166 (614)
                      +..+++|++|++++|.+..  ..+..+...++    +|++|++++|.++.......+..+..+++|++|++++|.+++..
T Consensus        52 l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  129 (461)
T 1z7x_W           52 LRVNPALAELNLRSNELGD--VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  129 (461)
T ss_dssp             HHTCTTCCEEECTTCCCHH--HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             HHhCCCcCEEeCCCCcCCh--HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence            4445666666666666542  22333333344    56666666666653111122235666666666666666665433


Q ss_pred             Ccccc-----CCCCCcEEEcccCCCCCcc----CCCCCCCCCCCCEEEcccCcCc
Q 042884          167 PWCVA-----NMTSLRILDVSSNQLTGSI----ASSPLAHLTSIEELHLSDNHFR  212 (614)
Q Consensus       167 ~~~~~-----~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~~~  212 (614)
                      +..+.     ..++|++|++++|++.+..    +. .+..+++|++|++++|.+.
T Consensus       130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH-HHhhCCCCCEEECcCCCcc
Confidence            33222     2345666666666655211    11 1334555666666665554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=2.4e-29  Score=264.48  Aligned_cols=226  Identities=19%  Similarity=0.209  Sum_probs=142.0

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF  355 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L  355 (614)
                      ++++.|++++|.+.+..+.. |..+++|++|++++|.+.++.+..|.++++|++|++++|.++ .++...+..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence            57788888888887444443 677888888888888888777777888888888888888887 6666655567888888


Q ss_pred             EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc----ccCCccEEEcCCCcCCc
Q 042884          356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK----VLSLLSGLDLSCNKLIG  431 (614)
Q Consensus       356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~L~~L~L~~n~l~~  431 (614)
                      +|++|.++...+..|..+++|++|++++|+..+.++...|.++++|++|++++|++++.    .+++|++|+|++|++++
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc
Confidence            88888887666677788888888888875444467776666777777666666665531    23344444444444444


Q ss_pred             cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcc
Q 042884          432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG  503 (614)
Q Consensus       432 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  503 (614)
                      ..|..|.++++|++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++.|
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            444444444444444444444444444444444444444444444444444444444444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=3.5e-30  Score=256.72  Aligned_cols=208  Identities=30%  Similarity=0.469  Sum_probs=134.2

Q ss_pred             ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCC-
Q 042884          272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP-  350 (614)
Q Consensus       272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~-  350 (614)
                      +..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|..++. ++ 
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~  174 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSK  174 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCT
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhh
Confidence            334444455555555444444443 445555555555555555544555555666666666666665556655555 44 


Q ss_pred             CccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCC
Q 042884          351 NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLI  430 (614)
Q Consensus       351 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~  430 (614)
                      +|++|++++|.+++..|..+..++ |++|++++|.+++..|. .+..+++                  |+.|++++|+++
T Consensus       175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~------------------L~~L~L~~N~l~  234 (313)
T 1ogq_A          175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKN------------------TQKIHLAKNSLA  234 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSC------------------CSEEECCSSEEC
T ss_pred             cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCC------------------CCEEECCCCcee
Confidence            666666666666666666666665 77777777766643333 3334444                  444444444444


Q ss_pred             ccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcc
Q 042884          431 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG  503 (614)
Q Consensus       431 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  503 (614)
                      +.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+
T Consensus       235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred             eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence            34443 667788999999999998888888888999999999999998888876 778889999999998443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.6e-28  Score=242.93  Aligned_cols=246  Identities=19%  Similarity=0.254  Sum_probs=153.0

Q ss_pred             cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccC--CChhhhhcCCCccEEE
Q 042884          279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH--IPLEIGDILPNLISFN  356 (614)
Q Consensus       279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~~l~~L~~L~  356 (614)
                      +.++.+++.++ .+|..+   .+++++|++++|.++.+.+..|..+++|++|++++|.++..  .+..++. +++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEE
Confidence            34555555555 444321   24556666666666655555555666666666666655411  1333333 56666666


Q ss_pred             ccCCcCCCCCccchhccccCcEEEccCCccCCcCCc-hhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcC
Q 042884          357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE-HLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKL  429 (614)
Q Consensus       357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l  429 (614)
                      +++|.+. .+|..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+.      .+++|++|++++|.+
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence            6666655 23444556666666666666665 3332 4445566666666666655431      245666777777776


Q ss_pred             Cc-cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcc
Q 042884          430 IG-HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW  508 (614)
Q Consensus       430 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  508 (614)
                      ++ ..|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|..
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            65 45666777777777777777777776777777777777777777777666666777777777777777777776666


Q ss_pred             cccc-CCcCcccccCCcCCCCCCC
Q 042884          509 KAQF-ATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       509 ~~~~-~~l~~~~~~~n~~~c~~~~  531 (614)
                      +..+ ++++.+++++|++.|+|+.
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEECSGGG
T ss_pred             HHhhhccCCEEEccCCCeecccCh
Confidence            6666 3677777777777777653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=5e-28  Score=245.92  Aligned_cols=217  Identities=19%  Similarity=0.163  Sum_probs=151.4

Q ss_pred             ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCC-CCCCCCCccCEEEccCCc-cccCCChhhhhcC
Q 042884          272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFR-LPIHSHKRLRQLDVSNNN-FQGHIPLEIGDIL  349 (614)
Q Consensus       272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l  349 (614)
                      +..+++|++|++++|.++ .+|...|..+++|++|++++|.+..+.. ..+..+++|++|++++|. +. .++...+..+
T Consensus        96 ~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l  173 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGL  173 (353)
T ss_dssp             TTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTC
T ss_pred             cCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCC
Confidence            445667777777777776 4555556777777777777777776655 567777888888888874 54 4544444457


Q ss_pred             CCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcC
Q 042884          350 PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKL  429 (614)
Q Consensus       350 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l  429 (614)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++..+++|+.|++++|.+++..+..+.         
T Consensus       174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------  243 (353)
T 2z80_A          174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELS---------  243 (353)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------------
T ss_pred             CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccc---------
Confidence            88888888888888777888888888888888888886 77776666667777777766666542221111         


Q ss_pred             CccCCccccCCCcCCEEECcCCcCCC----CCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884          430 IGHIPPQIGNLTRIQTLNLSHNNLTG----LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI  505 (614)
Q Consensus       430 ~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  505 (614)
                            .....+.++.++++++.+++    .+|..+..+++|++|++++|+++.+.+..|..+++|++|++++|++++.+
T Consensus       244 ------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          244 ------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             ---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence                  11234556777777776654    24566778888888899888888444444688889999999999998776


Q ss_pred             C
Q 042884          506 P  506 (614)
Q Consensus       506 ~  506 (614)
                      |
T Consensus       318 ~  318 (353)
T 2z80_A          318 P  318 (353)
T ss_dssp             H
T ss_pred             C
Confidence            5

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=6.7e-30  Score=278.84  Aligned_cols=436  Identities=12%  Similarity=0.016  Sum_probs=236.9

Q ss_pred             ccccCCCCCCCEEECCCccc-CCCCCCCCc-ccC------------CCCCCCEEeCCCCCCCccchHHHhh-ccC-CcEE
Q 042884           11 LQSMGSLPSLNTLYLKHNNF-TGTATTTTQ-ELH------------NFTNLEYSTLSGSSLHISLLQSIAS-LFP-SLKN   74 (614)
Q Consensus        11 ~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~-~l~------------~l~~L~~L~Ls~n~~~~~~~~~~~~-l~~-l~~l   74 (614)
                      +..+..+++|++|+++++.. .....  ++ .++            .+++|++|+|++|.+.+..+..+.. ++. |++|
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNL--IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTC--SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhccc--ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            33556789999999988642 11100  11 222            6889999999999888777777766 344 8999


Q ss_pred             eccCccccCCccCCCCCCCCCCCCEEeCcCcccCCCcc--hhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC
Q 042884           75 LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTS--FLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL  152 (614)
Q Consensus        75 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L  152 (614)
                      .+.+|.............++++|++|++++|.+.+...  ++..... +++|++|++++|.+++......+..+.++++|
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L  222 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH-NTSLEVLNFYMTEFAKISPKDLETIARNCRSL  222 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH-CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc-CCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence            98887632111100123467888888888887754100  3344444 88888888888877621111112245577888


Q ss_pred             CeEECcCCccccccCccccCCCCCcEEEcccCCCC---CccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEE
Q 042884          153 QELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLT---GSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF  229 (614)
Q Consensus       153 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  229 (614)
                      ++|++++|.+.+ +|..+..+++|++|+++.....   +..+. .+..+++|+.|+++++... .++ ..+..+++|+.|
T Consensus       223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~-~l~-~~~~~~~~L~~L  298 (592)
T 3ogk_B          223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYM-NLVFPRKLCRLGLSYMGPN-EMP-ILFPFAAQIRKL  298 (592)
T ss_dssp             CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSS-CCCCCTTCCEEEETTCCTT-TGG-GGGGGGGGCCEE
T ss_pred             cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHH-HhhccccccccCccccchh-HHH-HHHhhcCCCcEE
Confidence            888888888874 6677888888888888753322   11111 2556677777777665322 222 234455666666


Q ss_pred             EccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEcc
Q 042884          230 DAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLV  309 (614)
Q Consensus       230 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~  309 (614)
                      ++++|.+.+..                           ++..+..+++|++|+++ +.+.+.....++..+++|++|+++
T Consensus       299 ~Ls~~~l~~~~---------------------------~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          299 DLLYALLETED---------------------------HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             EETTCCCCHHH---------------------------HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ecCCCcCCHHH---------------------------HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence            66666543221                           11223455666666666 333322222334455666666666


Q ss_pred             C-----------CCCCCCCCCC-CCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc----CCcCCCC-----Ccc
Q 042884          310 N-----------DSLAGPFRLP-IHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS----MNALDGS-----IPS  368 (614)
Q Consensus       310 ~-----------n~i~~~~~~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~----~n~l~~~-----~~~  368 (614)
                      +           +.++...... ...+++|++|+++.|.+++..+..+...+++|+.|+++    .|.+++.     ++.
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~  430 (592)
T 3ogk_B          351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS  430 (592)
T ss_dssp             CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred             cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence            2           2222110000 12234444554444444433333333334445555543    3333321     122


Q ss_pred             chhccccCcEEEccCCc--cCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCc-cCCccccCCCcCCE
Q 042884          369 SFGNINLLKILDLSNNQ--LTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQT  445 (614)
Q Consensus       369 ~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  445 (614)
                      .+.++++|++|+++.|.  +++..+..+...                  +++|+.|++++|++++ ..+..+.++++|++
T Consensus       431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  492 (592)
T 3ogk_B          431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY------------------SPNVRWMLLGYVGESDEGLMEFSRGCPNLQK  492 (592)
T ss_dssp             HHHHCTTCCEEEEECCGGGCCHHHHHHHHHS------------------CTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred             HHHhCCCCCEEEEecCCCCccHHHHHHHHHh------------------CccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence            23344444444444322  332222222222                  4556666666666654 23344566777888


Q ss_pred             EECcCCcCCCC-CCcCCCCCCCCCEEEccCCcCCCCCcccc-cCCCCCCeEeccCC
Q 042884          446 LNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIPHQL-VELKTLEVFSLAFN  499 (614)
Q Consensus       446 L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~~~~~l-~~l~~L~~L~l~~N  499 (614)
                      |++++|.+++. .+.....+++|++|++++|+++......+ ..++.+....+..+
T Consensus       493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            88888876533 22334567778888888888765433323 24566655555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=249.40  Aligned_cols=229  Identities=21%  Similarity=0.221  Sum_probs=184.5

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF  355 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L  355 (614)
                      ++++.|++++|.+.+ ++...|..+++|++|++++|.+..+.+..|.++++|++|++++|.++ .++...+..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence            467777777777773 33333677777777777777777777677777777777777777776 5665555557777788


Q ss_pred             EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc----cccCCccEEEcCCCcCCc
Q 042884          356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIG  431 (614)
Q Consensus       356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~L~~L~L~~n~l~~  431 (614)
                      ++++|.++...+..|..+++|++|++++|+..+.++...|.++++|++|++++|+++.    ..+++|++|+|++|++++
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence            8877777766666777777888888877544446777777777778888888877765    236789999999999998


Q ss_pred             cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       432 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      ..|..|.++++|++|++++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.|.+.
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            889999999999999999999999999999999999999999999998888889999999999999999997554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.8e-28  Score=245.44  Aligned_cols=252  Identities=19%  Similarity=0.225  Sum_probs=207.8

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF  355 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L  355 (614)
                      ++|++|++++|.+. .++...+..+++|++|++++|.+.++.+..|..+++|++|++++|.++ .++...+..+++|++|
T Consensus        52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEE
Confidence            48899999999988 455544788999999999999999888888889999999999999998 6777766668999999


Q ss_pred             EccCCcCCCCCc-cchhccccCcEEEccCCc-cCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCC
Q 042884          356 NISMNALDGSIP-SSFGNINLLKILDLSNNQ-LTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCN  427 (614)
Q Consensus       356 ~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n  427 (614)
                      ++++|++++..+ ..+..+++|++|++++|. +. .++...+.++++|++|++++|++++.      .+++|++|++++|
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            999999886554 578889999999999985 55 66666678889999999999988763      3577899999999


Q ss_pred             cCCccCCccccCCCcCCEEECcCCcCCCCCCcCCC---CCCCCCEEEccCCcCCC----CCcccccCCCCCCeEeccCCc
Q 042884          428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS---NLKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSLAFNN  500 (614)
Q Consensus       428 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~  500 (614)
                      ++....+..+..+++|++|++++|.+++..+..+.   ..+.++.++++++.+.+    .+|+.+..+++|+.|++++|+
T Consensus       209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            98755445566789999999999999987665443   46789999999999875    367788999999999999999


Q ss_pred             CcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          501 LSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       501 l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      ++...+..+..+++++.+++++|++.|+||
T Consensus       289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            995444446889999999999999999986

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.1e-28  Score=239.36  Aligned_cols=249  Identities=22%  Similarity=0.261  Sum_probs=165.6

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCC--CCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPF--RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      ++|++|++++|.+. .+|..+|..+++|++|++++|.+....  +..+..+++|++|++++|.+. .+|..+.. +++|+
T Consensus        28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~-l~~L~  104 (306)
T 2z66_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG-LEQLE  104 (306)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEET-CTTCC
T ss_pred             CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCC-CCCCC
Confidence            35556666666655 444444555566666666666555321  223344556666666666655 44444333 56666


Q ss_pred             EEEccCCcCCCCCc-cchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-------cccCCccEEEcC
Q 042884          354 SFNISMNALDGSIP-SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-------KVLSLLSGLDLS  425 (614)
Q Consensus       354 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~L~~L~L~  425 (614)
                      +|++++|.+++..+ ..+..+++|++|++++|.+. ..+...+..+++|++|++++|.+++       ..+++|++|+++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence            66666666554433 45555666666666666655 3333334556666666666665543       235678888888


Q ss_pred             CCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC-CCCeEeccCCcCccc
Q 042884          426 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSLAFNNLSGE  504 (614)
Q Consensus       426 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~  504 (614)
                      +|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|++++.
T Consensus       184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            8888888889999999999999999999998888899999999999999999999999999985 999999999999975


Q ss_pred             CCc-cccc-cCCcCcccccCCcCCCC
Q 042884          505 IPE-WKAQ-FATFNESSYEGNTFLCG  528 (614)
Q Consensus       505 ~~~-~~~~-~~~l~~~~~~~n~~~c~  528 (614)
                      .+. ++.. +...+.+....+...|.
T Consensus       264 c~~~~~~~~l~~~~~~~~~~~~~~C~  289 (306)
T 2z66_A          264 CEHQSFLQWIKDQRQLLVEVERMECA  289 (306)
T ss_dssp             GGGHHHHHHHHHTGGGBSCGGGCBEE
T ss_pred             cChHHHHHHHHhhhhhhccccccccC
Confidence            441 1222 23344445555655554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.7e-29  Score=275.60  Aligned_cols=376  Identities=13%  Similarity=0.088  Sum_probs=227.5

Q ss_pred             CCCCCCEEeCcCcccCCCcchhhHhhhcCCC-cCEEeccCCc-CCCCCCCcCchhhcCCCCCCeEECcCCccccc----c
Q 042884           93 HFKSLEHLNMERARIAPNTSFLQIIGESTPS-LKYLSLSDFT-LSTNSSRILDRGLCSLMHLQELYKVNNDLRGS----L  166 (614)
Q Consensus        93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~-L~~L~L~~n~-l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~----~  166 (614)
                      .+++|++|+++++.+..  ..+..+...+++ |++|++++|. +..   .........+++|++|++++|.+++.    +
T Consensus       110 ~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~~L~~L~L~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l  184 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSD--LDLDRLAKARADDLETLKLDKCSGFTT---DGLLSIVTHCRKIKTLLMEESSFSEKDGKWL  184 (592)
T ss_dssp             HCTTCCEEEEESCBCCH--HHHHHHHHHHGGGCCEEEEESCEEEEH---HHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred             hCCCCCeEEeeccEecH--HHHHHHHHhccccCcEEECcCCCCcCH---HHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence            57788888888887764  445555543344 8888888775 211   11111234678888888888887655    2


Q ss_pred             CccccCCCCCcEEEcccCCCCC----ccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccc
Q 042884          167 PWCVANMTSLRILDVSSNQLTG----SIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITE  242 (614)
Q Consensus       167 ~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  242 (614)
                      +..+..+++|++|++++|.+.+    .++. .+..+++|++|++++|.+.+ ++ ..+..+++|+.|+++........  
T Consensus       185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~--  259 (592)
T 3ogk_B          185 HELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGM--  259 (592)
T ss_dssp             HHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTC--
T ss_pred             HHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccch--
Confidence            3345567888888888887761    2221 24567888888888887763 33 45667778888887753211110  


Q ss_pred             cccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCC-CCC
Q 042884          243 SYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFR-LPI  321 (614)
Q Consensus       243 ~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~  321 (614)
                                             ...+..+..+++|+.|+++++... .+|.. +..+++|++|++++|.+..... ..+
T Consensus       260 -----------------------~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~  314 (592)
T 3ogk_B          260 -----------------------PEKYMNLVFPRKLCRLGLSYMGPN-EMPIL-FPFAAQIRKLDLLYALLETEDHCTLI  314 (592)
T ss_dssp             -----------------------TTSSSCCCCCTTCCEEEETTCCTT-TGGGG-GGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred             -----------------------HHHHHHhhccccccccCccccchh-HHHHH-HhhcCCCcEEecCCCcCCHHHHHHHH
Confidence                                   112223344556666666554322 33332 4555666666666665432211 113


Q ss_pred             CCCCccCEEEccCCccccCCChhhhhcCCCccEEEccC-----------CcCCCC-CccchhccccCcEEEccCCccCCc
Q 042884          322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM-----------NALDGS-IPSSFGNINLLKILDLSNNQLTGE  389 (614)
Q Consensus       322 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~  389 (614)
                      ..+++|+.|+++ +.+.+.....+...+++|++|++++           +.+++. .+.....+++|++|+++.|.+++.
T Consensus       315 ~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~  393 (592)
T 3ogk_B          315 QKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE  393 (592)
T ss_dssp             TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred             HhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence            455666666666 3333222223333466677777662           344422 122234466677777766666655


Q ss_pred             CCchhhccCCCCCEEEcc----CCccccc-----------ccCCccEEEcCCCc--CCccCCcccc-CCCcCCEEECcCC
Q 042884          390 IPEHLAVGCVYLDFLALS----NNSLEGK-----------VLSLLSGLDLSCNK--LIGHIPPQIG-NLTRIQTLNLSHN  451 (614)
Q Consensus       390 ~~~~~~~~~~~L~~L~l~----~n~l~~~-----------~~~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n  451 (614)
                      .+..+...+++|+.|+++    .|.+++.           .+++|+.|++++|.  +++..+..+. .+++|++|++++|
T Consensus       394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n  473 (592)
T 3ogk_B          394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV  473 (592)
T ss_dssp             HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred             HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence            555554446667777764    4455531           25677778776543  5544444443 4899999999999


Q ss_pred             cCCCC-CCcCCCCCCCCCEEEccCCcCCCC-CcccccCCCCCCeEeccCCcCccc
Q 042884          452 NLTGL-IPSTFSNLKHIESLDLSYNKLNGK-IPHQLVELKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       452 ~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~  504 (614)
                      ++++. .+..+.++++|++|++++|.+++. ++.....+++|++|++++|+++..
T Consensus       474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            98753 344567889999999999998644 344456789999999999998854

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=6.3e-27  Score=230.32  Aligned_cols=222  Identities=21%  Similarity=0.239  Sum_probs=120.2

Q ss_pred             cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884          279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS  358 (614)
Q Consensus       279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~  358 (614)
                      +.++.+++.+. .+|..   ..+++++|++++|.+.++.+..|..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc-CCccCCCEEeCC
Confidence            44555555554 44432   23455555555555555555555555555555555555553223222 225555566665


Q ss_pred             CCc-CCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc------cccCCccEEEcCCCcCCc
Q 042884          359 MNA-LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIG  431 (614)
Q Consensus       359 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~L~~L~L~~n~l~~  431 (614)
                      +|. +....+..|..+++|++|++++|.++ .++...+..+++|++|++++|++++      ..+++|++|++++|++++
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            554 54444555555556666666666555 3333333444444444444443332      113445555555555555


Q ss_pred             cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       432 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      ..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            555556666666666666666666666666666666666666666665555556666666666666666664433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.3e-26  Score=241.72  Aligned_cols=242  Identities=21%  Similarity=0.244  Sum_probs=185.0

Q ss_pred             CCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcE
Q 042884          201 IEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEY  280 (614)
Q Consensus       201 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~  280 (614)
                      ...++.++..++ .+|.. +  .++++.|++++|.+.+..                            |..+..+++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~-~--~~~l~~L~L~~n~i~~~~----------------------------~~~~~~l~~L~~  103 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQG-I--PSNTRYLNLMENNIQMIQ----------------------------ADTFRHLHHLEV  103 (452)
T ss_dssp             SCEEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCEEC----------------------------TTTTTTCTTCCE
T ss_pred             CcEEEECCCCcC-ccCCC-C--CCCccEEECcCCcCceEC----------------------------HHHcCCCCCCCE
Confidence            456777777665 44421 1  256778888887776543                            344556778888


Q ss_pred             EEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccC-
Q 042884          281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM-  359 (614)
Q Consensus       281 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~-  359 (614)
                      |++++|.+.+..+. .|.++++|++|++++|.++.+.+..|..+++|++|++++|.++ .++...+..+++|++|++++ 
T Consensus       104 L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~  181 (452)
T 3zyi_A          104 LQLGRNSIRQIEVG-AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL  181 (452)
T ss_dssp             EECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCC
T ss_pred             EECCCCccCCcChh-hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCC
Confidence            88888888743333 3777888888888888888777777778888888888888887 56665566678888888887 


Q ss_pred             CcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcCCccC
Q 042884          360 NALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKLIGHI  433 (614)
Q Consensus       360 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l~~~~  433 (614)
                      +.+....+..|.++++|++|++++|+++ .+|.  +..+++|++|++++|++++.      .+++|+.|++++|++++..
T Consensus       182 ~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  258 (452)
T 3zyi_A          182 KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE  258 (452)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred             CCccccChhhccCCCCCCEEECCCCccc-cccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence            4455445556778888888888888887 5554  45777888888888887653      3578899999999999899


Q ss_pred             CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC
Q 042884          434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG  479 (614)
Q Consensus       434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  479 (614)
                      +..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus       259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            9999999999999999999999999999999999999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2e-26  Score=230.97  Aligned_cols=225  Identities=18%  Similarity=0.211  Sum_probs=171.2

Q ss_pred             CCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884          275 QHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS  354 (614)
Q Consensus       275 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~  354 (614)
                      .++++.|++++|.+. .+|.. +..+++|++|++++|.+. ..+..+..+++|++|++++|.++ .+|..+.. +++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQ-AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSC-GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCE
T ss_pred             ccceeEEEccCCCch-hcChh-hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCE
Confidence            468888999999888 77776 456888999999998888 45667888888999999999887 78877665 888999


Q ss_pred             EEccCCcCCCCCccchhc---------cccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcC
Q 042884          355 FNISMNALDGSIPSSFGN---------INLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLS  425 (614)
Q Consensus       355 L~L~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~  425 (614)
                      |++++|.+.+.+|..+..         +++|++|++++|.++ .+|..+ ..+++|++|++++|                
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N----------------  216 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNS----------------  216 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESS----------------
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCC----------------
Confidence            999888877777776654         888888888888887 777764 45555555555554                


Q ss_pred             CCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884          426 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI  505 (614)
Q Consensus       426 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  505 (614)
                        +++ .+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+
T Consensus       217 --~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          217 --PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             --CCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             --CCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence              444 24445777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CccccccCCcCcccccCCcC
Q 042884          506 PEWKAQFATFNESSYEGNTF  525 (614)
Q Consensus       506 ~~~~~~~~~l~~~~~~~n~~  525 (614)
                      |..+..+++++.+.+..+..
T Consensus       294 P~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          294 PSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CGGGGGSCTTCEEECCGGGS
T ss_pred             cHHHhhccCceEEeCCHHHH
Confidence            77777777777776665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.3e-26  Score=228.15  Aligned_cols=231  Identities=22%  Similarity=0.232  Sum_probs=178.9

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCc-cccCCChhhhhcCCCccE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN-FQGHIPLEIGDILPNLIS  354 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~  354 (614)
                      ++|++|++++|.+. .++...|..+++|++|++++|.+.++.+..|..+++|++|++++|. +. .++...+..+++|++
T Consensus        32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHT  109 (285)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCE
T ss_pred             CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCE
Confidence            57788888888877 3444446777888888888888877777777788888888888886 65 554444444788888


Q ss_pred             EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCc
Q 042884          355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNK  428 (614)
Q Consensus       355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~  428 (614)
                      |++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++++.      .+++|++|++++|+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence            888888888777777888888888888888887 66666667788888888888877652      35789999999999


Q ss_pred             CCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcc
Q 042884          429 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW  508 (614)
Q Consensus       429 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  508 (614)
                      +++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++....+.. .....++.+..+.+.+.+..|..
T Consensus       189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            99888999999999999999999999888888999999999999999998543321 11234556667888888888875


Q ss_pred             cc
Q 042884          509 KA  510 (614)
Q Consensus       509 ~~  510 (614)
                      +.
T Consensus       268 l~  269 (285)
T 1ozn_A          268 LA  269 (285)
T ss_dssp             GT
T ss_pred             hC
Confidence            43

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1e-25  Score=242.70  Aligned_cols=188  Identities=25%  Similarity=0.242  Sum_probs=113.6

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF  355 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L  355 (614)
                      ++|+.|++++|+++ .+|.    .+++|++|++++|.+.+++.    .+++|+.|++++|.++ .+|    ..+++|+.|
T Consensus       121 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L  186 (622)
T 3g06_A          121 SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLT-SLP----MLPSGLQEL  186 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-CCC----CCCTTCCEE
T ss_pred             CCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCC-CCc----ccCCCCcEE
Confidence            34555555555554 3332    12555555555555554322    2345666666666665 454    225566666


Q ss_pred             EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCc
Q 042884          356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPP  435 (614)
Q Consensus       356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~  435 (614)
                      ++++|.+++. |.   .+++|+.|++++|.++ .+|..                      +++|+.|++++|++++ +| 
T Consensus       187 ~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~~----------------------~~~L~~L~Ls~N~L~~-lp-  237 (622)
T 3g06_A          187 SVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPAL----------------------PSGLKELIVSGNRLTS-LP-  237 (622)
T ss_dssp             ECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCCC----------------------CTTCCEEECCSSCCSC-CC-
T ss_pred             ECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCCC----------------------CCCCCEEEccCCccCc-CC-
Confidence            6666666642 22   1356666777777665 44431                      2445555555665553 33 


Q ss_pred             cccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccC
Q 042884          436 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA  513 (614)
Q Consensus       436 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  513 (614)
                        ..+++|+.|++++|+++.+. .   .+++|+.|++++|+|+ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus       238 --~~l~~L~~L~Ls~N~L~~lp-~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          238 --VLPSELKELMVSGNRLTSLP-M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             --CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             --CCCCcCcEEECCCCCCCcCC-c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence              34577888888888887543 3   4677888888888888 6677788888888888888888877666554443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1e-25  Score=225.72  Aligned_cols=212  Identities=23%  Similarity=0.330  Sum_probs=180.2

Q ss_pred             CCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhh
Q 042884          267 TFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIG  346 (614)
Q Consensus       267 ~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~  346 (614)
                      .+|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+.+|..+.
T Consensus        95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~  171 (328)
T 4fcg_A           95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLA  171 (328)
T ss_dssp             SCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred             hcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCcccc-CcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence            34556667889999999999988 77876 6788999999999999884 456688889999999999887778887653


Q ss_pred             --------hcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCC
Q 042884          347 --------DILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL  418 (614)
Q Consensus       347 --------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  418 (614)
                              ..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ ..                  +++
T Consensus       172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l-~~------------------l~~  230 (328)
T 4fcg_A          172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI-HH------------------LPK  230 (328)
T ss_dssp             EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG-GG------------------CTT
T ss_pred             hccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh-cc------------------CCC
Confidence                    24899999999999999 77888999999999999999998 677654 34                  445


Q ss_pred             ccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccC
Q 042884          419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAF  498 (614)
Q Consensus       419 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~  498 (614)
                      |++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|+.+++..
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            56666666677778888999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcCc
Q 042884          499 NNLS  502 (614)
Q Consensus       499 N~l~  502 (614)
                      +.+.
T Consensus       311 ~~~~  314 (328)
T 4fcg_A          311 HLQA  314 (328)
T ss_dssp             GGSC
T ss_pred             HHHH
Confidence            8765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-27  Score=237.90  Aligned_cols=237  Identities=23%  Similarity=0.229  Sum_probs=163.4

Q ss_pred             CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      .+++|++|++++|.+.+. +...|..+++|++|++++|.+.+..+  +..+++|++|++++|.++ .++     ..++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~  102 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIE  102 (317)
T ss_dssp             TGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCC
T ss_pred             cCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcC
Confidence            445667777777776633 33336666777777777776665443  666667777777777665 333     136677


Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc-------ccCCccEEEcCC
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK-------VLSLLSGLDLSC  426 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~L~~L~L~~  426 (614)
                      +|++++|.+++..+..   +++|++|++++|+++ .++...+..+++|++|++++|.+++.       .+++|++|++++
T Consensus       103 ~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          103 TLHAANNNISRVSCSR---GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             EEECCSSCCSEEEECC---CSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             EEECCCCccCCcCccc---cCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            7777777766544332   456677777777766 44444445666677777777766541       246777788888


Q ss_pred             CcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCc-ccC
Q 042884          427 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS-GEI  505 (614)
Q Consensus       427 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~  505 (614)
                      |.+++..  ....+++|++|++++|++++..+. +..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ +.+
T Consensus       179 N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          179 NFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             SCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred             CcCcccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH
Confidence            8777552  233578999999999999876554 888899999999999998 56777888899999999999998 566


Q ss_pred             CccccccCCcCcccccCCcCCC
Q 042884          506 PEWKAQFATFNESSYEGNTFLC  527 (614)
Q Consensus       506 ~~~~~~~~~l~~~~~~~n~~~c  527 (614)
                      |.++..++.++.+++.+++...
T Consensus       255 ~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          255 RDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccceEEECCCchhcc
Confidence            7777888888888877554333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=6.3e-25  Score=236.57  Aligned_cols=269  Identities=27%  Similarity=0.304  Sum_probs=190.7

Q ss_pred             CCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCC
Q 042884          122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSI  201 (614)
Q Consensus       122 ~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  201 (614)
                      .+++.|++++|.++    .+|. .+.  ++|++|++++|.++ .+|.   .+++|++|+|++|+++ .+|.    .+++|
T Consensus        40 ~~l~~L~ls~n~L~----~lp~-~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L  103 (622)
T 3g06_A           40 NGNAVLNVGESGLT----TLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGL  103 (622)
T ss_dssp             HCCCEEECCSSCCS----CCCS-CCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTC
T ss_pred             CCCcEEEecCCCcC----ccCh-hhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCC
Confidence            35777788777776    5555 333  67788888888777 3444   4677888888888777 5664    56778


Q ss_pred             CEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEE
Q 042884          202 EELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYV  281 (614)
Q Consensus       202 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L  281 (614)
                      ++|++++|.++ .++.    .+++|+.|++++|.+...                             |.   .+++|++|
T Consensus       104 ~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~l-----------------------------p~---~l~~L~~L  146 (622)
T 3g06_A          104 LELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSL-----------------------------PV---LPPGLQEL  146 (622)
T ss_dssp             CEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSCC-----------------------------CC---CCTTCCEE
T ss_pred             CEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCcC-----------------------------CC---CCCCCCEE
Confidence            88888888776 3332    456777777777766532                             11   13678888


Q ss_pred             EccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCc
Q 042884          282 DLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA  361 (614)
Q Consensus       282 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~  361 (614)
                      ++++|.+. .+|.    .+++|+.|++++|.++.++    ..+++|+.|++++|.++ .+|..    +++|+.|++++|.
T Consensus       147 ~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~  212 (622)
T 3g06_A          147 SVSDNQLA-SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNR  212 (622)
T ss_dssp             ECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSC
T ss_pred             ECcCCcCC-CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCc
Confidence            88888887 4553    3567888888888888754    34678888999998887 56542    5788999999998


Q ss_pred             CCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCC
Q 042884          362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLT  441 (614)
Q Consensus       362 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  441 (614)
                      ++. +|.   .+++|+.|++++|.++ .+|.    .                  +++|+.|++++|+++. +|.   .++
T Consensus       213 l~~-l~~---~~~~L~~L~Ls~N~L~-~lp~----~------------------l~~L~~L~Ls~N~L~~-lp~---~~~  261 (622)
T 3g06_A          213 LTS-LPA---LPSGLKELIVSGNRLT-SLPV----L------------------PSELKELMVSGNRLTS-LPM---LPS  261 (622)
T ss_dssp             CSS-CCC---CCTTCCEEECCSSCCS-CCCC----C------------------CTTCCEEECCSSCCSC-CCC---CCT
T ss_pred             ccc-cCC---CCCCCCEEEccCCccC-cCCC----C------------------CCcCcEEECCCCCCCc-CCc---ccc
Confidence            884 333   2478999999999988 5662    2                  3445555666666663 333   567


Q ss_pred             cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC
Q 042884          442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK  489 (614)
Q Consensus       442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~  489 (614)
                      +|+.|+|++|+++ .+|..+.++++|+.|++++|++++..|..+..++
T Consensus       262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            8888999999888 4577788888999999999998887777666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=4.3e-25  Score=215.21  Aligned_cols=207  Identities=21%  Similarity=0.236  Sum_probs=146.9

Q ss_pred             CCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEE
Q 042884          301 TKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILD  380 (614)
Q Consensus       301 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  380 (614)
                      ...+.++++++.++.++.. +  .++++.|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSN-I--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccCCC-C--CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            3466777777777764332 2  246777777777776 55554444577777777777777766666667777777777


Q ss_pred             ccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcC
Q 042884          381 LSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPST  460 (614)
Q Consensus       381 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  460 (614)
                      +++|.++ .+|...|..+++                  |++|++++|++++..+..|..+++|++|++++|.+++..+..
T Consensus        92 l~~n~l~-~~~~~~~~~l~~------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  152 (270)
T 2o6q_A           92 VTDNKLQ-ALPIGVFDQLVN------------------LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV  152 (270)
T ss_dssp             CCSSCCC-CCCTTTTTTCSS------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCcCC-cCCHhHcccccC------------------CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence            7777776 556555555544                  455555555566566667777888888888888888777777


Q ss_pred             CCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          461 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       461 ~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      |..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++++.+++++|||.|+|+
T Consensus       153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            7888888888888888887666677778888888888888876666667777788888888888888775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.4e-27  Score=234.36  Aligned_cols=239  Identities=26%  Similarity=0.305  Sum_probs=135.3

Q ss_pred             cceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCCChhHH------hcCCCccEEEccCCCCCCCCCCCC--C
Q 042884          252 QLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMN-GEFPNWLL------ENNTKLKTLFLVNDSLAGPFRLPI--H  322 (614)
Q Consensus       252 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~------~~~~~L~~L~l~~n~i~~~~~~~~--~  322 (614)
                      +|+.+++ .++..  .+|..+...  |+.|++++|.+. ..+|....      ..+++|++|++++|.+.+..+..+  .
T Consensus        44 ~L~~l~l-~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           44 SLEYLLK-RVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             ECTTHHH-HCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CceeEee-ccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            5666666 33333  555544433  677777777763 33454321      146777777777777776555554  6


Q ss_pred             CCCccCEEEccCCccccCCChhhhhcC-----CCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcC--Cch-h
Q 042884          323 SHKRLRQLDVSNNNFQGHIPLEIGDIL-----PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEI--PEH-L  394 (614)
Q Consensus       323 ~l~~L~~L~l~~n~i~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~-~  394 (614)
                      .+++|++|++++|.+++. |..+.. +     ++|++|++++|++++..+..|+.+++|++|++++|++.+.+  |.. .
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             cCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            677777777777777643 544443 3     67777777777777666677777777777777777765432  222 2


Q ss_pred             hccCCCCCEEEccCCcccc---------cccCCccEEEcCCCcCCccCC-ccccCCCcCCEEECcCCcCCCCCCcCCCCC
Q 042884          395 AVGCVYLDFLALSNNSLEG---------KVLSLLSGLDLSCNKLIGHIP-PQIGNLTRIQTLNLSHNNLTGLIPSTFSNL  464 (614)
Q Consensus       395 ~~~~~~L~~L~l~~n~l~~---------~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  464 (614)
                      +..+++|++|++++|++++         ..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+.  
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence            3456666666666666552         112455555555555554432 23344455555555555555 2333332  


Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCc
Q 042884          465 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS  502 (614)
Q Consensus       465 ~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  502 (614)
                      ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            4555555555555533 33 455555555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.9e-26  Score=229.70  Aligned_cols=245  Identities=21%  Similarity=0.245  Sum_probs=202.0

Q ss_pred             cccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCC-CCCCCC-------CCCccCEEEccCCccccCCC
Q 042884          271 FLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGP-FRLPIH-------SHKRLRQLDVSNNNFQGHIP  342 (614)
Q Consensus       271 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~-------~l~~L~~L~l~~n~i~~~~~  342 (614)
                      .+...++|+.|++++|.+  .+|..+...   |+.|++++|.+... .+..+.       .+++|++|++++|.+++.+|
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            345667899999999999  778765443   88899999988542 222222       58899999999999998888


Q ss_pred             hhhh-hcCCCccEEEccCCcCCCCCccchhcc-----ccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc---
Q 042884          343 LEIG-DILPNLISFNISMNALDGSIPSSFGNI-----NLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG---  413 (614)
Q Consensus       343 ~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~---  413 (614)
                      ..++ ..+++|++|++++|++++. |..+..+     ++|++|++++|++. .++...+..+++|++|++++|++.+   
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchH
Confidence            8763 5589999999999999977 8888887     89999999999998 6665566899999999999999754   


Q ss_pred             -------cccCCccEEEcCCCcCCc---cCCccccCCCcCCEEECcCCcCCCCCC-cCCCCCCCCCEEEccCCcCCCCCc
Q 042884          414 -------KVLSLLSGLDLSCNKLIG---HIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIP  482 (614)
Q Consensus       414 -------~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~  482 (614)
                             ..+++|++|++++|++++   .....+..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip  269 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP  269 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence                   346889999999999983   222445688999999999999998775 56777899999999999999 677


Q ss_pred             ccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCC
Q 042884          483 HQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC  527 (614)
Q Consensus       483 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c  527 (614)
                      ..+.  ++|++|++++|++++. |. +..+++++.+++++|++..
T Consensus       270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            7665  8899999999999976 66 7889999999999998753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=5.7e-25  Score=216.15  Aligned_cols=208  Identities=25%  Similarity=0.237  Sum_probs=151.1

Q ss_pred             HhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccC
Q 042884          297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLL  376 (614)
Q Consensus       297 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  376 (614)
                      ++.++++++++++++.++.++...   .++++.|++++|.++ .++...+..+++|++|++++|.+++..+.  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            345566677777776666544322   246666777777666 33333333466667777766666643322  556666


Q ss_pred             cEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCC
Q 042884          377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL  456 (614)
Q Consensus       377 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  456 (614)
                      ++|++++|+++ .+|..+ ..                  +++|++|++++|++++..+..|.++++|++|++++|++++.
T Consensus        80 ~~L~Ls~N~l~-~l~~~~-~~------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  139 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLG-QT------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL  139 (290)
T ss_dssp             CEEECCSSCCS-SCCCCT-TT------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             CEEECCCCcCC-cCchhh-cc------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence            66666666665 555432 22                  45667777777777777778899999999999999999988


Q ss_pred             CCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884          457 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       457 ~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      .+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|..+.....++.+++.+|||.|+|..
T Consensus       140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence            8888899999999999999999777777888999999999999998 5666677777899999999999998864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=4.4e-26  Score=240.88  Aligned_cols=228  Identities=22%  Similarity=0.224  Sum_probs=148.9

Q ss_pred             CccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhc
Q 042884          269 PKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI  348 (614)
Q Consensus       269 p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~  348 (614)
                      |..+..+++|++|++++|.+.+..|   +..+++|++|++++|.+.++.+     .++|+.|++++|.+++ ++..   .
T Consensus        51 ~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~-~~~~---~  118 (487)
T 3oja_A           51 AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR-VSCS---R  118 (487)
T ss_dssp             GGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCC-EEEC---C
T ss_pred             HHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCC-CCcc---c
Confidence            3445555666666666666654333   4556666666666666554332     2556666666666652 2221   2


Q ss_pred             CCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCc
Q 042884          349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNK  428 (614)
Q Consensus       349 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~  428 (614)
                      +++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+...+                  ++|+.|+|++|.
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l------------------~~L~~L~Ls~N~  180 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS------------------DTLEHLNLQYNF  180 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT------------------TTCCEEECTTSC
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC------------------CcccEEecCCCc
Confidence            45566666666666655555566666666666666666544444443333                  455555566666


Q ss_pred             CCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCc-ccCCc
Q 042884          429 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS-GEIPE  507 (614)
Q Consensus       429 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~  507 (614)
                      +++..+  +..+++|+.|+|++|.+++.+|. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.
T Consensus       181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             cccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            654422  33578899999999999876554 8888999999999999984 6777888899999999999998 55666


Q ss_pred             cccccCCcCccccc-------CCcCCCCCC
Q 042884          508 WKAQFATFNESSYE-------GNTFLCGLP  530 (614)
Q Consensus       508 ~~~~~~~l~~~~~~-------~n~~~c~~~  530 (614)
                      ++..++.++.+++.       ++++.|.|+
T Consensus       257 ~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             HHHhCCCCcEEeccccccccCCCcccccCC
Confidence            67777777777765       788888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=231.31  Aligned_cols=261  Identities=19%  Similarity=0.163  Sum_probs=180.5

Q ss_pred             CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCC
Q 042884           96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTS  175 (614)
Q Consensus        96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  175 (614)
                      .++..+++.+.+.   ..+..+...+++|++|++++|.++    .+++..|..+++|++|++++|.+++..+  +..+++
T Consensus        11 ~l~i~~ls~~~l~---~~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~   81 (317)
T 3o53_A           11 RYKIEKVTDSSLK---QALASLRQSAWNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETLD--LESLST   81 (317)
T ss_dssp             EEEEESCCTTTHH---HHHHHHHTTGGGCSEEECTTSCCC----CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTT
T ss_pred             ceeEeeccccchh---hhHHHHhccCCCCCEEECcCCccC----cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCC
Confidence            3455566666554   444455544677888888888777    4555577788888888888888775443  777788


Q ss_pred             CcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884          176 LRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY  255 (614)
Q Consensus       176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  255 (614)
                      |++|++++|.++ .++     ..++|++|++++|.+.+..+    ..+++|+.|++++|.+.+..               
T Consensus        82 L~~L~Ls~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~---------------  136 (317)
T 3o53_A           82 LRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLR---------------  136 (317)
T ss_dssp             CCEEECCSSEEE-EEE-----ECTTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGG---------------
T ss_pred             CCEEECcCCccc-ccc-----CCCCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCcc---------------
Confidence            888888888776 333     23677788888877763221    23566777777777665432               


Q ss_pred             eeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCC
Q 042884          256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN  335 (614)
Q Consensus       256 L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  335 (614)
                                   +..+..+++|++|++++|.+.+..+..++..+++|++|++++|.++++..  ...+++|++|++++|
T Consensus       137 -------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          137 -------------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSN  201 (317)
T ss_dssp             -------------GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSS
T ss_pred             -------------chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCC
Confidence                         23445677888888888888865566545678888888888888887633  234788888888888


Q ss_pred             ccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccC
Q 042884          336 NFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN  408 (614)
Q Consensus       336 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~  408 (614)
                      .++ .+|..+.. +++|++|++++|+++ .+|..+..+++|+.|++++|.+....+...+..++.|+.+++++
T Consensus       202 ~l~-~l~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          202 KLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CCC-EECGGGGG-GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCC-cchhhhcc-cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            887 56655444 788888888888888 45667788888888888888887333334445666666666663

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2.9e-25  Score=217.36  Aligned_cols=209  Identities=22%  Similarity=0.240  Sum_probs=125.0

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF  355 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L  355 (614)
                      ++|++|++++|.+.+ ++...|..+++|++|++++|.+.++.+..|..+++|++|++++|.++ .++...+..+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence            356666666666663 33323566666666666666666665556666666666666666665 3333333336666666


Q ss_pred             EccCCcCCCCCccchhccccCcEEEccCCccCCc-CCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCC
Q 042884          356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGE-IPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP  434 (614)
Q Consensus       356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~  434 (614)
                      ++++|.+.+..+..+..+++|++|++++|.+++. +|..+ ..                  +++|++|++++|++++..+
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-~~------------------l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SN------------------LTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-GG------------------CTTCCEEECCSSCCCEECG
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh-cc------------------CCCCCEEECCCCCCCcCCH
Confidence            6666666655555566666666666666666521 23332 23                  3344444445555554555


Q ss_pred             ccccCCCcCC----EEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          435 PQIGNLTRIQ----TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       435 ~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      ..+..+++|+    +|++++|.+++..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++++.+|
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            5565555555    6777777777665555543 367777777777776655566667777777777777776554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.3e-27  Score=258.91  Aligned_cols=375  Identities=18%  Similarity=0.153  Sum_probs=174.3

Q ss_pred             CCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCC-cCCCCCCCcCchhhcCCCCCCeEECcCCccccccCcccc
Q 042884           93 HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF-TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVA  171 (614)
Q Consensus        93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n-~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  171 (614)
                      .+++|++|+++++.++.  ..+..+...+++|++|++++| .++.   ...+..+.++++|++|++++|.+++..+.++.
T Consensus       103 ~~~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~  177 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTD--DCLELIAKSFKNFKVLVLSSCEGFST---DGLAAIAATCRNLKELDLRESDVDDVSGHWLS  177 (594)
T ss_dssp             HCTTCCEEEEESCBCCH--HHHHHHHHHCTTCCEEEEESCEEEEH---HHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred             hCCCCCeEEeeCcEEcH--HHHHHHHHhCCCCcEEeCCCcCCCCH---HHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence            46677777777777664  445555533778888888777 3331   11221334677788888887777655444443


Q ss_pred             ----CCCCCcEEEcccCCCCCccCCC----CCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcc-------
Q 042884          172 ----NMTSLRILDVSSNQLTGSIASS----PLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL-------  236 (614)
Q Consensus       172 ----~l~~L~~L~L~~n~l~~~~~~~----~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~-------  236 (614)
                          .+++|++|++++|. . .+...    .+..+++|++|++++|.....++ ..+..+++|+.|+++.+..       
T Consensus       178 ~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~  254 (594)
T 2p1m_B          178 HFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVY  254 (594)
T ss_dssp             GSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred             HHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCccchhhH
Confidence                55678888887775 1 22211    12345777888877773221222 3455667777777654431       


Q ss_pred             cccccccccCCCCCccceee-eccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCC
Q 042884          237 NAEITESYSLTTPNFQLQYL-LLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAG  315 (614)
Q Consensus       237 ~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~  315 (614)
                      .+... .+   ....+|+.+ .+  .......++..+..+++|++|++++|.+.+.....++..+++|++|++++| +..
T Consensus       255 ~~l~~-~l---~~~~~L~~Ls~~--~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~  327 (594)
T 2p1m_B          255 SGLSV-AL---SGCKELRCLSGF--WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED  327 (594)
T ss_dssp             HHHHH-HH---HTCTTCCEEECC--BTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred             HHHHH-HH---hcCCCcccccCC--cccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence            11000 00   111233333 11  011112233333345556666666555443222222345555555555554 221


Q ss_pred             CCCC-CCCCCCccCEEEccC---------CccccCCChhhhhcCCCccEEEccCCcCCCCCccchh-ccccCcEEEcc--
Q 042884          316 PFRL-PIHSHKRLRQLDVSN---------NNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG-NINLLKILDLS--  382 (614)
Q Consensus       316 ~~~~-~~~~l~~L~~L~l~~---------n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--  382 (614)
                      .... ....+++|++|++++         +.+++.....+...+++|+.|.+..|.+++.....+. .+++|+.|+++  
T Consensus       328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~  407 (594)
T 2p1m_B          328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII  407 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence            0000 011244555555522         2222111112222245555555555554433333332 34555555555  


Q ss_pred             C----CccCCcCCc-----hhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccC-CCcCCEEECcCCc
Q 042884          383 N----NQLTGEIPE-----HLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN-LTRIQTLNLSHNN  452 (614)
Q Consensus       383 ~----n~l~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~  452 (614)
                      +    +.++ ..|.     .++..++                  +|+.|++++ .+++..+..+.. +++|++|++++|.
T Consensus       408 ~~~~~~~l~-~~~~~~~~~~l~~~~~------------------~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~  467 (594)
T 2p1m_B          408 EPKAPDYLT-LEPLDIGFGAIVEHCK------------------DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG  467 (594)
T ss_dssp             STTCCCTTT-CCCTHHHHHHHHHHCT------------------TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred             cCCCccccc-CCchhhHHHHHHhhCC------------------CccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence            2    2232 1111     1123344                  455555544 333332233332 4555556665555


Q ss_pred             CCCCCCcCC-CCCCCCCEEEccCCcCCCCCcc-cccCCCCCCeEeccCCcCc
Q 042884          453 LTGLIPSTF-SNLKHIESLDLSYNKLNGKIPH-QLVELKTLEVFSLAFNNLS  502 (614)
Q Consensus       453 l~~~~~~~~-~~l~~L~~L~ls~N~l~~~~~~-~l~~l~~L~~L~l~~N~l~  502 (614)
                      +++.....+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++
T Consensus       468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            543322222 3455566666666655432222 2233555666666666553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=5.5e-24  Score=207.36  Aligned_cols=207  Identities=25%  Similarity=0.294  Sum_probs=179.5

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF  355 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L  355 (614)
                      ...+.++++++.++ .+|..+   .+++++|++++|.+..+.+..|..+++|++|++++|.++ .++...+..+++|++|
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE
T ss_pred             CCCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE
Confidence            35789999999998 677642   368999999999999988889999999999999999998 7888877779999999


Q ss_pred             EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCc
Q 042884          356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPP  435 (614)
Q Consensus       356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~  435 (614)
                      ++++|.+++..+..|..+++|++|++++|.++ .++...|..+++|                  ++|++++|++++..+.
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L------------------~~L~Ls~n~l~~~~~~  151 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKL------------------TYLSLGYNELQSLPKG  151 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTC------------------CEEECCSSCCCCCCTT
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCC------------------CEEECCCCcCCccCHh
Confidence            99999999888888999999999999999998 6666665555554                  4555555566656667


Q ss_pred             cccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          436 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       436 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      .|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            78999999999999999999888889999999999999999998777789999999999999999997665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=3.5e-24  Score=209.66  Aligned_cols=227  Identities=21%  Similarity=0.239  Sum_probs=186.4

Q ss_pred             EEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccC
Q 042884          280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM  359 (614)
Q Consensus       280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~  359 (614)
                      .++..+..+. .+|..+   .+++++|++++|.++++.+..|..+++|++|++++|.++ .++...+..+++|++|++++
T Consensus        11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence            3455555555 566542   357999999999999988888999999999999999998 55555555699999999999


Q ss_pred             CcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCcc-CCcccc
Q 042884          360 NALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH-IPPQIG  438 (614)
Q Consensus       360 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~-~~~~~~  438 (614)
                      |.+++..+..|.++++|++|++++|.+. .++...+..+++                  |++|++++|++++. +|..|.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~------------------L~~L~l~~n~l~~~~l~~~~~  146 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKT------------------LKELNVAHNLIQSFKLPEYFS  146 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTT------------------CCEEECCSSCCCCCCCCGGGG
T ss_pred             CccCccChhhhcCCccccEEECCCCCcc-ccCchhcccCCC------------------CCEEECcCCccceecCchhhc
Confidence            9999888899999999999999999998 555544445444                  45555555555543 578899


Q ss_pred             CCCcCCEEECcCCcCCCCCCcCCCCCCCCC----EEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCC
Q 042884          439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIE----SLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFAT  514 (614)
Q Consensus       439 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  514 (614)
                      .+++|++|++++|++++..+..+..+++|+    .|++++|.+.+..+..+.. .+|+.|++++|++++..+..+..+++
T Consensus       147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~  225 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTS  225 (276)
T ss_dssp             GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred             cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccccc
Confidence            999999999999999988888888777777    9999999999766665544 58999999999999877777788999


Q ss_pred             cCcccccCCcCCCCCCC
Q 042884          515 FNESSYEGNTFLCGLPL  531 (614)
Q Consensus       515 l~~~~~~~n~~~c~~~~  531 (614)
                      ++.+++++||+.|+|+.
T Consensus       226 L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          226 LQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCEEECCSSCBCCCTTT
T ss_pred             ccEEEccCCcccccCCc
Confidence            99999999999999973

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3e-25  Score=234.50  Aligned_cols=170  Identities=19%  Similarity=0.247  Sum_probs=99.1

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF  355 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L  355 (614)
                      ++|+.|++++|.+.+..+    ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+                  
T Consensus        99 ~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l------------------  156 (487)
T 3oja_A           99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI------------------  156 (487)
T ss_dssp             TTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC------------------
T ss_pred             CCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC------------------
Confidence            355555555555553222    1234445555555554444444444444444444444444                  


Q ss_pred             EccCCcCCCCCccchh-ccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCC
Q 042884          356 NISMNALDGSIPSSFG-NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP  434 (614)
Q Consensus       356 ~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~  434 (614)
                             ++..|..+. .+++|++|++++|.++ .+|...  .                  +++|+.|+|++|.+++..|
T Consensus       157 -------~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~--~------------------l~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          157 -------DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--V------------------FAKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             -------CEEEGGGGGGGTTTCCEEECTTSCCC-EEECCC--C------------------CTTCCEEECCSSCCCEECG
T ss_pred             -------CCcChHHHhhhCCcccEEecCCCccc-cccccc--c------------------CCCCCEEECCCCCCCCCCH
Confidence                   444444433 4455555555555554 222211  1                  3344444555555554433


Q ss_pred             ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCC-CCCcccccCCCCCCeEecc
Q 042884          435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN-GKIPHQLVELKTLEVFSLA  497 (614)
Q Consensus       435 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~-~~~~~~l~~l~~L~~L~l~  497 (614)
                       .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence             37778888888888888886 4566888889999999999887 5667778888888888886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=9.8e-28  Score=261.85  Aligned_cols=427  Identities=14%  Similarity=0.092  Sum_probs=248.7

Q ss_pred             ccCCCCCCCEEECCCccc-CCCCCC--CC--------c-ccCCCCCCCEEeCCCCCCCccchHHHh-hccCCcEEeccCc
Q 042884           13 SMGSLPSLNTLYLKHNNF-TGTATT--TT--------Q-ELHNFTNLEYSTLSGSSLHISLLQSIA-SLFPSLKNLSMSY   79 (614)
Q Consensus        13 ~~~~l~~L~~L~Ls~n~i-~~~~~~--~~--------~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~l~~l~l~~~   79 (614)
                      .+.++++|++|+++++.. ......  .+        + ....+++|++|++++|.+.+..+..+. .+++|++|.+.+|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            456778899999988752 211100  00        1 123567888888888887776666665 5778888888777


Q ss_pred             cccCC--ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHh---hhcCCCcCEEeccCCcCCCCCCCcCchh----hcCCC
Q 042884           80 CEVNG--VVRGQGFPHFKSLEHLNMERARIAPNTSFLQII---GESTPSLKYLSLSDFTLSTNSSRILDRG----LCSLM  150 (614)
Q Consensus        80 ~~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l---~~~l~~L~~L~L~~n~l~~~~~~i~~~~----~~~l~  150 (614)
                      ...+.  ++  ..+.++++|++|++++|.+++  ..+..+   ...+++|++|++++|. .    .+....    +..++
T Consensus       141 ~~~~~~~l~--~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~~~~L~~L~l~~~~-~----~~~~~~l~~l~~~~~  211 (594)
T 2p1m_B          141 EGFSTDGLA--AIAATCRNLKELDLRESDVDD--VSGHWLSHFPDTYTSLVSLNISCLA-S----EVSFSALERLVTRCP  211 (594)
T ss_dssp             EEEEHHHHH--HHHHHCTTCCEEECTTCEEEC--CCGGGGGGSCTTCCCCCEEECTTCC-S----CCCHHHHHHHHHHCT
T ss_pred             CCCCHHHHH--HHHHhCCCCCEEeCcCCccCC--cchHHHHHHhhcCCcCcEEEecccC-C----cCCHHHHHHHHHhCC
Confidence            43322  22  123457777777777777553  112212   2226677777777765 1    122212    23457


Q ss_pred             CCCeEECcCC-ccccccCccccCCCCCcEEEcccCC-------CCCccCCCCCCCCCCCCEE-EcccCcCccccCccccc
Q 042884          151 HLQELYKVNN-DLRGSLPWCVANMTSLRILDVSSNQ-------LTGSIASSPLAHLTSIEEL-HLSDNHFRIPISLEPLF  221 (614)
Q Consensus       151 ~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~  221 (614)
                      +|++|++++| .+. .++..+..+++|++|+++.+.       +. .++. .+.++++|+.| .+.+.... .++ ..+.
T Consensus       212 ~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~~-~l~-~~~~  286 (594)
T 2p1m_B          212 NLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVPA-YLP-AVYS  286 (594)
T ss_dssp             TCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCGG-GGG-GGHH
T ss_pred             CCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccchh-hHH-HHHH
Confidence            7777777776 333 356666677777777755443       11 1222 24566666666 33322211 111 1122


Q ss_pred             CCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCC
Q 042884          222 NHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNT  301 (614)
Q Consensus       222 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~  301 (614)
                      .+++|+.|++++|.+...                           .++..+..+++|++|++++| +.+.....+...++
T Consensus       287 ~~~~L~~L~L~~~~l~~~---------------------------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSY---------------------------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHTTCCEEECTTCCCCHH---------------------------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             hhCCCCEEEccCCCCCHH---------------------------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            456666666666654321                           12233557899999999988 44232333355789


Q ss_pred             CccEEEccC---------CCCCCCCCCCC-CCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc--C----CcCCCC
Q 042884          302 KLKTLFLVN---------DSLAGPFRLPI-HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS--M----NALDGS  365 (614)
Q Consensus       302 ~L~~L~l~~---------n~i~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~--~----n~l~~~  365 (614)
                      +|++|++.+         +.++......+ .++++|+.|++..|.+++.....+...+++|+.|+++  +    +.++..
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            999999954         33332111112 2478999999999998765555555568999999999  4    555532


Q ss_pred             -----CccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccc-cC
Q 042884          366 -----IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI-GN  439 (614)
Q Consensus       366 -----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~-~~  439 (614)
                           ++..+..+++|+.|++++ .+++..+..+...+++|+.|++++|.+++                  .....+ .+
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~------------------~~~~~l~~~  479 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD------------------LGMHHVLSG  479 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH------------------HHHHHHHHH
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH------------------HHHHHHHhc
Confidence                 222367789999999988 66645455554446666666666655433                  222222 45


Q ss_pred             CCcCCEEECcCCcCCCCCCc-CCCCCCCCCEEEccCCcCCCCCcccc-cCCCCCCeEeccCCc
Q 042884          440 LTRIQTLNLSHNNLTGLIPS-TFSNLKHIESLDLSYNKLNGKIPHQL-VELKTLEVFSLAFNN  500 (614)
Q Consensus       440 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~N~l~~~~~~~l-~~l~~L~~L~l~~N~  500 (614)
                      +++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus       480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            66777777777776433222 33446777777777777643222223 345666655555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.4e-23  Score=204.49  Aligned_cols=206  Identities=24%  Similarity=0.273  Sum_probs=175.4

Q ss_pred             ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCC
Q 042884          272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPN  351 (614)
Q Consensus       272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~  351 (614)
                      +..+++++.++++++.++ .+|..+   .+.++.|++++|.+.++.+..|..+++|+.|++++|.++ .++..  ..+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence            457889999999999998 677653   368999999999999988888999999999999999998 45443  45899


Q ss_pred             ccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCc
Q 042884          352 LISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIG  431 (614)
Q Consensus       352 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~  431 (614)
                      |++|++++|.++ .+|..+..+++|++|++++|+++ .+|...|.++++|                  ++|+|++|++++
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L------------------~~L~L~~N~l~~  138 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL------------------QELYLKGNELKT  138 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTC------------------CEEECTTSCCCC
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCC------------------CEEECCCCCCCc
Confidence            999999999998 56778899999999999999998 6776666555555                  455555566666


Q ss_pred             cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884          432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI  505 (614)
Q Consensus       432 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  505 (614)
                      ..+..|..+++|+.|+|++|+++++.+..|..+++|+.|++++|+++ .+|..+...+.|+.+++++|++.|.+
T Consensus       139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            77778899999999999999999888888999999999999999999 67788888899999999999998654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5e-23  Score=200.73  Aligned_cols=208  Identities=21%  Similarity=0.262  Sum_probs=141.1

Q ss_pred             cCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCc
Q 042884          273 YHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNL  352 (614)
Q Consensus       273 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L  352 (614)
                      ..+++|+.|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.++ .++...+..+++|
T Consensus        38 ~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  111 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL  111 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred             ccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence            34567777777777766 3443  56677777777777777663  25666677777777777776 4444444446777


Q ss_pred             cEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCcc
Q 042884          353 ISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH  432 (614)
Q Consensus       353 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~  432 (614)
                      ++|++++|++++..+..|..+++|++|++++|.++ .+|...+..+                  ++|+.|++++|++++.
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l------------------~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKL------------------TNLTELDLSYNQLQSL  172 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC------------------TTCCEEECCSSCCCCC
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccC------------------ccCCEEECCCCCcCcc
Confidence            77777777777666666677777777777777766 4554444333                  3445555555556656


Q ss_pred             CCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884          433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF  512 (614)
Q Consensus       433 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  512 (614)
                      .+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.+.       ++.|+.+++..|.++|.+|.+++.+
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            666677888888888888888887777788888888888888877643       4567788888888888887765543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=4.3e-22  Score=191.63  Aligned_cols=181  Identities=24%  Similarity=0.261  Sum_probs=138.0

Q ss_pred             CCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEE
Q 042884          301 TKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILD  380 (614)
Q Consensus       301 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  380 (614)
                      ...++++++++.++.++.. +  .+.++.|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            3456777777777765432 2  246777777777776 34443344477777777777777777777777777777777


Q ss_pred             ccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcC
Q 042884          381 LSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPST  460 (614)
Q Consensus       381 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  460 (614)
                      +++|+++ .+|...|..                  +++|++|+|++|++++..+..|..+++|++|+|++|++++..+..
T Consensus        90 L~~n~l~-~~~~~~~~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  150 (251)
T 3m19_A           90 LANNQLA-SLPLGVFDH------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA  150 (251)
T ss_dssp             CTTSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCccc-ccChhHhcc------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence            7777776 555554433                  456667777778888777777889999999999999999888888


Q ss_pred             CCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884          461 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       461 ~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  504 (614)
                      |..+++|++|++++|++++..+..|..+++|+.|++++|++++.
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999999999999999988888888999999999999999876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2e-22  Score=196.40  Aligned_cols=204  Identities=22%  Similarity=0.261  Sum_probs=158.9

Q ss_pred             CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEE
Q 042884          277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN  356 (614)
Q Consensus       277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~  356 (614)
                      .+..+++..+.+.+...   ...+++|+.|++++|.+..+  ..+..+++|++|++++|.++ .++ .+ ..+++|++|+
T Consensus        20 ~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~   91 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-AL-KELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GG-TTCTTCCEEE
T ss_pred             HHHHHHhcCcccccccc---cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hh-cCCCCCCEEE
Confidence            34455666666654433   45678888999988888764  34777888888888888887 343 33 3478888888


Q ss_pred             ccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCcc
Q 042884          357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQ  436 (614)
Q Consensus       357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~  436 (614)
                      +++|.+++..+..|..+++|++|++++|+++ .++...+..++                  +|++|++++|++++..+..
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~------------------~L~~L~L~~n~l~~~~~~~  152 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLT------------------NLTYLNLAHNQLQSLPKGV  152 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCT------------------TCCEEECCSSCCCCCCTTT
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCC------------------CCCEEECCCCccCccCHHH
Confidence            8888888777777888888888888888887 55655554444                  4555555566666667777


Q ss_pred             ccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCc
Q 042884          437 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE  507 (614)
Q Consensus       437 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  507 (614)
                      |..+++|++|++++|++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++.+.+|.
T Consensus       153 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            88999999999999999988888889999999999999999988888889999999999999999877663

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.6e-22  Score=201.25  Aligned_cols=221  Identities=23%  Similarity=0.241  Sum_probs=150.8

Q ss_pred             CCCcEEEccCCCCCCCCChhH--HhcCCCccEEEccCCCCCCCCCCCC--CCCCccCEEEccCCccccCCC----hhhhh
Q 042884          276 HDLEYVDLSHTKMNGEFPNWL--LENNTKLKTLFLVNDSLAGPFRLPI--HSHKRLRQLDVSNNNFQGHIP----LEIGD  347 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~~~~  347 (614)
                      ..++.+.+.++.+....-..+  +..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+++..+    ..++ 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            457888888887753211110  2245679999999999998888887  889999999999999986555    2223 


Q ss_pred             cCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCc--CC-chhhccCCCCCEEEccCCcccc---------cc
Q 042884          348 ILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE--IP-EHLAVGCVYLDFLALSNNSLEG---------KV  415 (614)
Q Consensus       348 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~~~~L~~L~l~~n~l~~---------~~  415 (614)
                      .+++|++|++++|.+.+..+..|..+++|++|++++|++.+.  ++ ...+..+++|++|++++|+++.         ..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            488999999999999988889999999999999999997642  22 2223567777777777777753         12


Q ss_pred             cCCccEEEcCCCcCCccCCccccCC---CcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 042884          416 LSLLSGLDLSCNKLIGHIPPQIGNL---TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE  492 (614)
Q Consensus       416 ~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~  492 (614)
                      +++|++|+|++|++++..|..+..+   ++|++|+|++|+++. +|..+.  ++|++|++++|++++. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            3566666666666665555555444   466666666666663 333332  5666666666666643 22 45556666


Q ss_pred             eEeccCCcCc
Q 042884          493 VFSLAFNNLS  502 (614)
Q Consensus       493 ~L~l~~N~l~  502 (614)
                      .|++++|+++
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            6666666655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=7.9e-22  Score=189.80  Aligned_cols=180  Identities=24%  Similarity=0.294  Sum_probs=115.8

Q ss_pred             CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEE
Q 042884          277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN  356 (614)
Q Consensus       277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~  356 (614)
                      ..++++++++.+. .+|..+   .+.+++|++++|.+.++.+..|..+++|++|++++|.++ .++...+..+++|++|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence            4566777777666 555432   256677777777777666666677777777777777776 34444444467777777


Q ss_pred             ccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCcc
Q 042884          357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQ  436 (614)
Q Consensus       357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~  436 (614)
                      +++|.+++..+..|..+++|++|++++|+++ .+|...|..                  +++|++|+|++|++++..+..
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~------------------l~~L~~L~Ls~N~l~~~~~~~  150 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDR------------------LTKLKELRLNTNQLQSIPAGA  150 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhcc------------------CCcccEEECcCCcCCccCHHH
Confidence            7777777666666667777777777777776 555544433                  334445555555666555556


Q ss_pred             ccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCC
Q 042884          437 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK  480 (614)
Q Consensus       437 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  480 (614)
                      |..+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            66777777777777777766666677777777777777776643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=4.9e-22  Score=189.85  Aligned_cols=85  Identities=20%  Similarity=0.184  Sum_probs=38.5

Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCccCEEEccCCc-cccCCChhhhhcCCCccEEEccC-CcCCCCCccchhccccCcEE
Q 042884          302 KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN-FQGHIPLEIGDILPNLISFNISM-NALDGSIPSSFGNINLLKIL  379 (614)
Q Consensus       302 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  379 (614)
                      ++++|++++|+++++.+..|..+++|++|++++|. ++ .++...+..+++|++|++++ |.+++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            34444444444444444444444444444444443 33 33333333344445555544 44444444444445555555


Q ss_pred             EccCCccC
Q 042884          380 DLSNNQLT  387 (614)
Q Consensus       380 ~l~~n~l~  387 (614)
                      ++++|.++
T Consensus       111 ~l~~n~l~  118 (239)
T 2xwt_C          111 GIFNTGLK  118 (239)
T ss_dssp             EEEEECCC
T ss_pred             eCCCCCCc
Confidence            55555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=2e-21  Score=192.71  Aligned_cols=193  Identities=18%  Similarity=0.334  Sum_probs=134.7

Q ss_pred             CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      .+++|++|++++|.+. .++.  +..+++|++|++++|.+.++.+  +..+++|+.|++++|.++ .++ .+ ..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~-~~l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AI-AGLQSIK  110 (308)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GG-TTCTTCC
T ss_pred             HcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hh-cCCCCCC
Confidence            4667777777777776 4443  5667777777777777776554  666777777777777776 343 23 3367777


Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccC
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHI  433 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~  433 (614)
                      +|++++|.+++..  .+..+++|++|++++|.++ .++.  +..                  +++|+.|++++|++++..
T Consensus       111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~-~~~~--l~~------------------l~~L~~L~l~~n~l~~~~  167 (308)
T 1h6u_A          111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQIT-NISP--LAG------------------LTNLQYLSIGNAQVSDLT  167 (308)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GGG------------------CTTCCEEECCSSCCCCCG
T ss_pred             EEECCCCCCCCch--hhcCCCCCCEEECCCCccC-cCcc--ccC------------------CCCccEEEccCCcCCCCh
Confidence            7777777776532  2666777777777777766 3333  233                  445556666666666433


Q ss_pred             CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcc
Q 042884          434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG  503 (614)
Q Consensus       434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  503 (614)
                      +  +..+++|++|++++|.+++..+  +..+++|++|++++|++++..|  +..+++|+.|++++|++++
T Consensus       168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            3  7888899999999999886644  7888899999999999886543  7888899999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=5.8e-22  Score=189.35  Aligned_cols=205  Identities=19%  Similarity=0.237  Sum_probs=155.9

Q ss_pred             CCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCC-CCCCCCCCCCCCCccCEEEccC-CccccCCCh
Q 042884          266 ATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS-LAGPFRLPIHSHKRLRQLDVSN-NNFQGHIPL  343 (614)
Q Consensus       266 ~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~  343 (614)
                      ..+|. +  .++|++|++++|+++ .+|...|..+++|++|++++|. ++.+.+..|.++++|++|++++ |.++ .++.
T Consensus        24 ~~ip~-~--~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~   98 (239)
T 2xwt_C           24 QRIPS-L--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDP   98 (239)
T ss_dssp             SSCCC-C--CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECT
T ss_pred             cccCC-C--CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCH
Confidence            34555 3  248999999999998 5555558889999999999997 8888888899999999999998 9998 6666


Q ss_pred             hhhhcCCCccEEEccCCcCCCCCccchhccccCc---EEEccCC-ccCCcCCchhhccCCCCC-EEEccCCcccccccCC
Q 042884          344 EIGDILPNLISFNISMNALDGSIPSSFGNINLLK---ILDLSNN-QLTGEIPEHLAVGCVYLD-FLALSNNSLEGKVLSL  418 (614)
Q Consensus       344 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~  418 (614)
                      ..+..+++|++|++++|.+++ +|. |..+++|+   +|++++| .++ .+|...|.++++|+ .               
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~---------------  160 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLT---------------  160 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEE---------------
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeE---------------
Confidence            666668999999999999986 454 88888888   9999999 887 67766665555444 4               


Q ss_pred             ccEEEcCCCcCCccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCC-CCCCEEEccCCcCCCCCcccccCCCCCCeEec
Q 042884          419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNL-KHIESLDLSYNKLNGKIPHQLVELKTLEVFSL  496 (614)
Q Consensus       419 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l  496 (614)
                         |++++|+++...+..|.. ++|++|++++|+ ++++.+..|.++ ++|+.|++++|++++..+.   .+++|+.|++
T Consensus       161 ---L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l  233 (239)
T 2xwt_C          161 ---LKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIA  233 (239)
T ss_dssp             ---EECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEEC
T ss_pred             ---EEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeec
Confidence               444444555344445555 788888888884 887777888888 8888888888888854333   5667888888


Q ss_pred             cCCc
Q 042884          497 AFNN  500 (614)
Q Consensus       497 ~~N~  500 (614)
                      +++.
T Consensus       234 ~~~~  237 (239)
T 2xwt_C          234 RNTW  237 (239)
T ss_dssp             TTC-
T ss_pred             cCcc
Confidence            7763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.8e-22  Score=205.53  Aligned_cols=243  Identities=18%  Similarity=0.196  Sum_probs=174.6

Q ss_pred             CCCCCCccccCCCCCcEEEccCCCCCCCCCh---hHHhcCC-CccEEEccCCCCCCCCCCCCCCC-----CccCEEEccC
Q 042884          264 DGATFPKFLYHQHDLEYVDLSHTKMNGEFPN---WLLENNT-KLKTLFLVNDSLAGPFRLPIHSH-----KRLRQLDVSN  334 (614)
Q Consensus       264 ~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~l~~  334 (614)
                      ..+.+|..+...++|++|++++|.+.+..+.   ..+..++ +|++|++++|.+....+..+..+     ++|++|++++
T Consensus        10 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~   89 (362)
T 3goz_A           10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG   89 (362)
T ss_dssp             TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred             chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence            3344555555666799999999998844331   3366777 89999999998887665555554     8899999999


Q ss_pred             CccccCCChhhhh---cC-CCccEEEccCCcCCCCCccchhc-----cccCcEEEccCCccCCcCCchh---hccCC-CC
Q 042884          335 NNFQGHIPLEIGD---IL-PNLISFNISMNALDGSIPSSFGN-----INLLKILDLSNNQLTGEIPEHL---AVGCV-YL  401 (614)
Q Consensus       335 n~i~~~~~~~~~~---~l-~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~---~~~~~-~L  401 (614)
                      |.+++..+..+..   .+ ++|++|++++|.+++..+..+..     .++|++|++++|.+++..+..+   +...+ +|
T Consensus        90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV  169 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence            9988555544333   13 78999999999988766655443     3589999999998875433332   23344 89


Q ss_pred             CEEEccCCcccccc----------c-CCccEEEcCCCcCCcc----CCccccC-CCcCCEEECcCCcCCCCCC----cCC
Q 042884          402 DFLALSNNSLEGKV----------L-SLLSGLDLSCNKLIGH----IPPQIGN-LTRIQTLNLSHNNLTGLIP----STF  461 (614)
Q Consensus       402 ~~L~l~~n~l~~~~----------~-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~~----~~~  461 (614)
                      ++|++++|++++..          . ++|++|+|++|++++.    ++..+.. .++|++|+|++|.+++..+    ..+
T Consensus       170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~  249 (362)
T 3goz_A          170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK  249 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred             cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence            99999999887533          2 6899999999998863    3445555 3589999999999886544    445


Q ss_pred             CCCCCCCEEEccCCcCCCCCc-------ccccCCCCCCeEeccCCcCcccCC
Q 042884          462 SNLKHIESLDLSYNKLNGKIP-------HQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       462 ~~l~~L~~L~ls~N~l~~~~~-------~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      ..+++|++|++++|.+..+.+       ..+..+++|+.||+++|++....+
T Consensus       250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            778899999999998554333       356677889999999999876533

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.6e-22  Score=205.75  Aligned_cols=248  Identities=19%  Similarity=0.172  Sum_probs=192.4

Q ss_pred             EEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCC----CCCCCCC-ccCEEEccCCccccCCChhhhhc----CC
Q 042884          280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFR----LPIHSHK-RLRQLDVSNNNFQGHIPLEIGDI----LP  350 (614)
Q Consensus       280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~----l~  350 (614)
                      .++++.|.+++.+|.. +...++|++|++++|.+.....    ..+..++ +|++|++++|.+++..+..+...    .+
T Consensus         2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4688999999777764 5566669999999999998766    6677888 89999999999986555555442    28


Q ss_pred             CccEEEccCCcCCCCCccchhcc-----ccCcEEEccCCccCCcCCchh---hcc-CCCCCEEEccCCccccc-------
Q 042884          351 NLISFNISMNALDGSIPSSFGNI-----NLLKILDLSNNQLTGEIPEHL---AVG-CVYLDFLALSNNSLEGK-------  414 (614)
Q Consensus       351 ~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~---~~~-~~~L~~L~l~~n~l~~~-------  414 (614)
                      +|++|+|++|.+++..+..+...     ++|++|++++|.+++..+..+   +.. .++|++|++++|.+++.       
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            99999999999997777655443     899999999999985444333   223 46999999999999841       


Q ss_pred             ----ccCCccEEEcCCCcCCccCCccc----cCC-CcCCEEECcCCcCCCC----CCcCCCC-CCCCCEEEccCCcCCCC
Q 042884          415 ----VLSLLSGLDLSCNKLIGHIPPQI----GNL-TRIQTLNLSHNNLTGL----IPSTFSN-LKHIESLDLSYNKLNGK  480 (614)
Q Consensus       415 ----~~~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~ls~N~l~~~  480 (614)
                          .+++|++|+|++|++++..+..+    ..+ ++|++|+|++|.+++.    ++..+.. .++|++|++++|.+.+.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence                23599999999999997776544    444 6999999999999863    2334444 45999999999999876


Q ss_pred             Cc----ccccCCCCCCeEeccCCcCcccC-------CccccccCCcCcccccCCcCCCC
Q 042884          481 IP----HQLVELKTLEVFSLAFNNLSGEI-------PEWKAQFATFNESSYEGNTFLCG  528 (614)
Q Consensus       481 ~~----~~l~~l~~L~~L~l~~N~l~~~~-------~~~~~~~~~l~~~~~~~n~~~c~  528 (614)
                      .+    ..+..+++|++|++++|.+....       +..+..+++++.+++++|+....
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            55    34567799999999999954322       23456677888999999987654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=1.2e-21  Score=198.29  Aligned_cols=239  Identities=20%  Similarity=0.175  Sum_probs=159.3

Q ss_pred             cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE-EEc
Q 042884          279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS-FNI  357 (614)
Q Consensus       279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~-L~L  357 (614)
                      ++++.++++++ .+|..+   .+++++|++++|+|+.+.+.+|.++++|++|+|++|.+.+.+|...|..++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666777776 666543   3567777777777777777777777777777777777765667666666666554 555


Q ss_pred             cCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccC-Cccccc-------ccCCccEEEcCCCcC
Q 042884          358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN-NSLEGK-------VLSLLSGLDLSCNKL  429 (614)
Q Consensus       358 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~-------~~~~L~~L~L~~n~l  429 (614)
                      ..|+++...|..|..+++|++|++++|+++ .+|...+.....+..+++.+ +++...       ....++.|+|++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            667777777777777777788888777776 55655555566666777755 344321       124577788888888


Q ss_pred             CccCCccccCCCcCCEEECcC-CcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcc
Q 042884          430 IGHIPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW  508 (614)
Q Consensus       430 ~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  508 (614)
                      +.+.+..| ...+|++|++++ |.++.+.++.|.++++|++|++++|+|+.+.+..|.   .|+.|.+.++.--..+|. 
T Consensus       167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~-  241 (350)
T 4ay9_X          167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT-  241 (350)
T ss_dssp             CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-
T ss_pred             cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-
Confidence            75555555 346788888864 667766667788888888888888888855444444   455555544443335665 


Q ss_pred             ccccCCcCcccccCCcCCCC
Q 042884          509 KAQFATFNESSYEGNTFLCG  528 (614)
Q Consensus       509 ~~~~~~l~~~~~~~n~~~c~  528 (614)
                      +..+++|+.+++. +++.|.
T Consensus       242 l~~l~~L~~l~l~-~~~~c~  260 (350)
T 4ay9_X          242 LEKLVALMEASLT-YPSHCC  260 (350)
T ss_dssp             TTTCCSCCEEECS-CHHHHH
T ss_pred             chhCcChhhCcCC-CCcccc
Confidence            6667777777764 555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=1.3e-20  Score=190.66  Aligned_cols=206  Identities=18%  Similarity=0.140  Sum_probs=111.7

Q ss_pred             CEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCE-
Q 042884          125 KYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEE-  203 (614)
Q Consensus       125 ~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-  203 (614)
                      ++++.++++++    ++|. .+  .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|..+|.+++++++ 
T Consensus        12 ~~v~C~~~~Lt----~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVT----EIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCC----SCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             CEEEecCCCCC----ccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            44555555555    4444 22  1355666666666654444455666666666666665544555555555555543 


Q ss_pred             EEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEc
Q 042884          204 LHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDL  283 (614)
Q Consensus       204 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L  283 (614)
                      +.+.+|.+. .++...|..+++|+.|++                                                    
T Consensus        85 l~~~~N~l~-~l~~~~f~~l~~L~~L~l----------------------------------------------------  111 (350)
T 4ay9_X           85 RIEKANNLL-YINPEAFQNLPNLQYLLI----------------------------------------------------  111 (350)
T ss_dssp             EEEEETTCC-EECTTSBCCCTTCCEEEE----------------------------------------------------
T ss_pred             hcccCCccc-ccCchhhhhccccccccc----------------------------------------------------
Confidence            333444444 233334444444444444                                                    


Q ss_pred             cCCCCCCCCChhHHhcCCCccEEEccC-CCCCCCCCCCCCCCC-ccCEEEccCCccccCCChhhhhcCCCccEEEccC-C
Q 042884          284 SHTKMNGEFPNWLLENNTKLKTLFLVN-DSLAGPFRLPIHSHK-RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM-N  360 (614)
Q Consensus       284 s~n~i~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~-n  360 (614)
                      ++|++. .+|...+....++..+++.+ +.+..+....|..+. .++.|++++|.++ .++...+. ..+|+++++++ |
T Consensus       112 ~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~~n  188 (350)
T 4ay9_X          112 SNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSDNN  188 (350)
T ss_dssp             EEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSST-TEEEEEEECTTCT
T ss_pred             cccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcc-ccchhHHhhccCC
Confidence            444444 22222233333444555533 344444444555543 4666777777776 56666655 45677777764 5


Q ss_pred             cCCCCCccchhccccCcEEEccCCccCCcCCchh
Q 042884          361 ALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHL  394 (614)
Q Consensus       361 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  394 (614)
                      .++.+.+.+|.++++|++|++++|+++ .+|...
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~  221 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYG  221 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcC-ccChhh
Confidence            565555566777777777777777777 666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.1e-21  Score=193.11  Aligned_cols=223  Identities=19%  Similarity=0.244  Sum_probs=179.5

Q ss_pred             cCCCccEEEccCCCCCCCCCC---CCCCCCccCEEEccCCccccCCChhhh-hcCCCccEEEccCCcCCCCCc----cch
Q 042884          299 NNTKLKTLFLVNDSLAGPFRL---PIHSHKRLRQLDVSNNNFQGHIPLEIG-DILPNLISFNISMNALDGSIP----SSF  370 (614)
Q Consensus       299 ~~~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~----~~~  370 (614)
                      ....++.+.+.++.+......   .+..+++|++|++++|.+.+..|..++ ..+++|++|++++|.+++..+    ..+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            344678889888876531111   122346799999999999988887763 458999999999999997554    445


Q ss_pred             hccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc----------cccCCccEEEcCCCcCCccCC--c-cc
Q 042884          371 GNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----------KVLSLLSGLDLSCNKLIGHIP--P-QI  437 (614)
Q Consensus       371 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~----------~~~~~L~~L~L~~n~l~~~~~--~-~~  437 (614)
                      ..+++|++|++++|.+. .++...+..+++|++|++++|++.+          ..+++|++|+|++|+++...+  . .+
T Consensus       142 ~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             TBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            67999999999999998 6666667899999999999999754          246789999999999973321  1 35


Q ss_pred             cCCCcCCEEECcCCcCCCCCCcCCCCC---CCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCC
Q 042884          438 GNLTRIQTLNLSHNNLTGLIPSTFSNL---KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFAT  514 (614)
Q Consensus       438 ~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  514 (614)
                      ..+++|++|+|++|++++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~  295 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE  295 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence            788999999999999999888777776   69999999999999 6677664  7999999999999964 44 567889


Q ss_pred             cCcccccCCcCCC
Q 042884          515 FNESSYEGNTFLC  527 (614)
Q Consensus       515 l~~~~~~~n~~~c  527 (614)
                      ++.+++++|++..
T Consensus       296 L~~L~L~~N~l~~  308 (310)
T 4glp_A          296 VDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCEECSSTTTSC
T ss_pred             ccEEECcCCCCCC
Confidence            9999999999753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.5e-22  Score=208.18  Aligned_cols=239  Identities=15%  Similarity=0.182  Sum_probs=181.3

Q ss_pred             CCCccccCCCCCcEEEccCCCCCCCCChh---HHhcCCCccEEEccCCCCCCCC---CCC-------CCCCCccCEEEcc
Q 042884          267 TFPKFLYHQHDLEYVDLSHTKMNGEFPNW---LLENNTKLKTLFLVNDSLAGPF---RLP-------IHSHKRLRQLDVS  333 (614)
Q Consensus       267 ~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~~~~~~L~~L~l~~n~i~~~~---~~~-------~~~l~~L~~L~l~  333 (614)
                      .++..+..+++|++|++++|.+.+..+..   .+..+++|++|++++|.+..+.   +..       +..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            34566777889999999999887543332   1457889999999987655322   222       3577899999999


Q ss_pred             CCccccC----CChhhhhcCCCccEEEccCCcCCCCCccc----hhcc---------ccCcEEEccCCccCC-cCCc--h
Q 042884          334 NNNFQGH----IPLEIGDILPNLISFNISMNALDGSIPSS----FGNI---------NLLKILDLSNNQLTG-EIPE--H  393 (614)
Q Consensus       334 ~n~i~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~l~~n~l~~-~~~~--~  393 (614)
                      +|.+++.    ++..+.. +++|++|+|++|.++...+..    +..+         ++|++|++++|+++. .+|.  .
T Consensus       103 ~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            9998752    4444444 899999999999987443333    3344         899999999999872 3332  3


Q ss_pred             hhccCCCCCEEEccCCcccc-----------cccCCccEEEcCCCcCC----ccCCccccCCCcCCEEECcCCcCCCC--
Q 042884          394 LAVGCVYLDFLALSNNSLEG-----------KVLSLLSGLDLSCNKLI----GHIPPQIGNLTRIQTLNLSHNNLTGL--  456 (614)
Q Consensus       394 ~~~~~~~L~~L~l~~n~l~~-----------~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~--  456 (614)
                      .+..+++|++|++++|+++.           ..+++|+.|+|++|.++    ..+|..+..+++|++|+|++|.+++.  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            45678899999999998872           13578999999999986    46677888999999999999999865  


Q ss_pred             --CCcCC--CCCCCCCEEEccCCcCCC----CCcccc-cCCCCCCeEeccCCcCcccCC
Q 042884          457 --IPSTF--SNLKHIESLDLSYNKLNG----KIPHQL-VELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       457 --~~~~~--~~l~~L~~L~ls~N~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~~  506 (614)
                        ++..+  ..+++|+.|++++|.+++    .+|..+ ..+++|++|++++|++++..+
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence              34555  348999999999999986    377776 568999999999999997653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=5.7e-21  Score=179.51  Aligned_cols=154  Identities=25%  Similarity=0.341  Sum_probs=104.1

Q ss_pred             CEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEcc
Q 042884          328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALS  407 (614)
Q Consensus       328 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  407 (614)
                      +.++.+++.++ .+|..+   .++++.|++++|.+++..+..|..+++|++|++++|+++ .++...|.+          
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~----------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQG----------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTT----------
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhC----------
Confidence            56777777776 677654   356777777777777666667777777777777777776 333322332          


Q ss_pred             CCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccC
Q 042884          408 NNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE  487 (614)
Q Consensus       408 ~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~  487 (614)
                              +++|++|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..+..|..
T Consensus        79 --------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  150 (220)
T 2v9t_B           79 --------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP  150 (220)
T ss_dssp             --------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             --------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence                    344555555566666555566677777777777777777776777777777777777777777666666777


Q ss_pred             CCCCCeEeccCCcCccc
Q 042884          488 LKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       488 l~~L~~L~l~~N~l~~~  504 (614)
                      +++|+.|++++|++.+.
T Consensus       151 l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          151 LRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CTTCCEEECCSSCEECS
T ss_pred             CCCCCEEEeCCCCcCCC
Confidence            77777777777777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.7e-20  Score=186.15  Aligned_cols=207  Identities=21%  Similarity=0.291  Sum_probs=160.0

Q ss_pred             EccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCc
Q 042884          282 DLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA  361 (614)
Q Consensus       282 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~  361 (614)
                      .+..+.+.+.++   ...+++|++|++++|.+..+.  .+..+++|+.|++++|.++ .++.  +..+++|++|++++|.
T Consensus        25 ~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~   96 (308)
T 1h6u_A           25 AAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNP   96 (308)
T ss_dssp             HTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCC
T ss_pred             HhCCCCcCceec---HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCc
Confidence            445555553333   446778888889888888753  5777888888888888887 5555  4448888888888888


Q ss_pred             CCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCC
Q 042884          362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLT  441 (614)
Q Consensus       362 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  441 (614)
                      +++.  ..+..+++|++|++++|.++ .++.  +..++                  +|++|++++|++++..+  +..++
T Consensus        97 l~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~------------------~L~~L~l~~n~l~~~~~--l~~l~  151 (308)
T 1h6u_A           97 LKNV--SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLS------------------NLQVLYLDLNQITNISP--LAGLT  151 (308)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCC-CCGG--GTTCT------------------TCCEEECCSSCCCCCGG--GGGCT
T ss_pred             CCCc--hhhcCCCCCCEEECCCCCCC-Cchh--hcCCC------------------CCCEEECCCCccCcCcc--ccCCC
Confidence            8754  35788888888888888887 4443  34444                  45555555566654433  88999


Q ss_pred             cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCccccc
Q 042884          442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYE  521 (614)
Q Consensus       442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~  521 (614)
                      +|++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..+  +..+++++.++++
T Consensus       152 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~  225 (308)
T 1h6u_A          152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence            99999999999997644  8999999999999999996544  8899999999999999996553  7888999999999


Q ss_pred             CCcCCC
Q 042884          522 GNTFLC  527 (614)
Q Consensus       522 ~n~~~c  527 (614)
                      +|++.+
T Consensus       226 ~N~i~~  231 (308)
T 1h6u_A          226 NQTITN  231 (308)
T ss_dssp             EEEEEC
T ss_pred             CCeeec
Confidence            999865

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.2e-22  Score=209.00  Aligned_cols=238  Identities=18%  Similarity=0.184  Sum_probs=191.8

Q ss_pred             CCChhHHhcCCCccEEEccCCCCCCCCC----CCCCCCCccCEEEccCCc---cccCCChhh------hhcCCCccEEEc
Q 042884          291 EFPNWLLENNTKLKTLFLVNDSLAGPFR----LPIHSHKRLRQLDVSNNN---FQGHIPLEI------GDILPNLISFNI  357 (614)
Q Consensus       291 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~---i~~~~~~~~------~~~l~~L~~L~L  357 (614)
                      .++.. +..+++|++|++++|.+....+    ..+..+++|+.|++++|.   +.+.+|..+      +..+++|++|+|
T Consensus        23 ~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            35554 6788999999999999886533    347789999999999964   444556554      244899999999


Q ss_pred             cCCcCCC----CCccchhccccCcEEEccCCccCCcCCchhh---ccC---------CCCCEEEccCCccccc-------
Q 042884          358 SMNALDG----SIPSSFGNINLLKILDLSNNQLTGEIPEHLA---VGC---------VYLDFLALSNNSLEGK-------  414 (614)
Q Consensus       358 ~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~~---------~~L~~L~l~~n~l~~~-------  414 (614)
                      ++|.++.    .++..+..+++|++|++++|.+++..+..+.   ..+         ++|++|++++|+++..       
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            9999997    4677889999999999999999743333332   223         8999999999999731       


Q ss_pred             ---ccCCccEEEcCCCcCCc-----cCCccccCCCcCCEEECcCCcCC----CCCCcCCCCCCCCCEEEccCCcCCCC--
Q 042884          415 ---VLSLLSGLDLSCNKLIG-----HIPPQIGNLTRIQTLNLSHNNLT----GLIPSTFSNLKHIESLDLSYNKLNGK--  480 (614)
Q Consensus       415 ---~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~ls~N~l~~~--  480 (614)
                         .+++|++|++++|+++.     ..+..+..+++|++|+|++|.++    ..+|..+..+++|+.|++++|.+++.  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence               35799999999999983     34447889999999999999996    55677889999999999999999865  


Q ss_pred             --CcccccC--CCCCCeEeccCCcCcc----cCCccc-cccCCcCcccccCCcCCCCC
Q 042884          481 --IPHQLVE--LKTLEVFSLAFNNLSG----EIPEWK-AQFATFNESSYEGNTFLCGL  529 (614)
Q Consensus       481 --~~~~l~~--l~~L~~L~l~~N~l~~----~~~~~~-~~~~~l~~~~~~~n~~~c~~  529 (614)
                        +|..+..  +++|++|++++|++++    .+|..+ ..+++++.+++++|++....
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              5666644  8999999999999997    467656 55799999999999988765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=9.1e-21  Score=178.12  Aligned_cols=156  Identities=23%  Similarity=0.290  Sum_probs=124.5

Q ss_pred             CEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCc-cchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEc
Q 042884          328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIP-SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLAL  406 (614)
Q Consensus       328 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l  406 (614)
                      +.+++++|.++ .+|..+   .+.+++|++++|.+++..+ ..|..+++|++|++++|+++ .++...|.+         
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~---------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEG---------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTT---------
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCC---------
Confidence            57888888887 677655   3457888888888886644 45788888888888888887 555544433         


Q ss_pred             cCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCccccc
Q 042884          407 SNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV  486 (614)
Q Consensus       407 ~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~  486 (614)
                               +++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|.
T Consensus        80 ---------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           80 ---------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             ---------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred             ---------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence                     45566677777788877788888899999999999999888888888899999999999999888888888


Q ss_pred             CCCCCCeEeccCCcCcccCC
Q 042884          487 ELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       487 ~l~~L~~L~l~~N~l~~~~~  506 (614)
                      .+++|+.|++++|++++.++
T Consensus       151 ~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          151 TLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TCTTCCEEECCSCCEECSGG
T ss_pred             CCCCCCEEEecCcCCcCCCc
Confidence            88899999999999887655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=6.3e-21  Score=192.24  Aligned_cols=240  Identities=19%  Similarity=0.176  Sum_probs=178.2

Q ss_pred             CCcEEEccCCCCCCCCChhHHhcC--CCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccC-CChhhhhcCCCcc
Q 042884          277 DLEYVDLSHTKMNGEFPNWLLENN--TKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH-IPLEIGDILPNLI  353 (614)
Q Consensus       277 ~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~  353 (614)
                      .++.++++++.+.   + ..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+ ..+++|+
T Consensus        48 ~~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCS
T ss_pred             hheeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCC
Confidence            4778888888775   2 235555  7889999999988876555 44688999999999988744 44433 4488999


Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCC-ccCCcCCchhhccCCCCCEEEccCC-ccccc-------ccC-CccEEE
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNN-QLTGEIPEHLAVGCVYLDFLALSNN-SLEGK-------VLS-LLSGLD  423 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-------~~~-~L~~L~  423 (614)
                      +|++++|.+++..+..+..+++|++|++++| .+++......+..+++|++|++++| .+++.       .++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            9999999888777888888899999999998 5664323344577889999999998 77752       356 899999


Q ss_pred             cCCC--cCC-ccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCCCCCCEEEccCCcCCCCCcc---cccCCCCCCeEec
Q 042884          424 LSCN--KLI-GHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGKIPH---QLVELKTLEVFSL  496 (614)
Q Consensus       424 L~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~---~l~~l~~L~~L~l  496 (614)
                      +++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.  +..+.   .+..+++|+.|++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l  279 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQV  279 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEEC
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEec
Confidence            9999  455 3456677788999999999998 776667788888999999999996  23333   5778899999999


Q ss_pred             cCCcCcccCCcccccc-CCcCcccccCCcCCCC
Q 042884          497 AFNNLSGEIPEWKAQF-ATFNESSYEGNTFLCG  528 (614)
Q Consensus       497 ~~N~l~~~~~~~~~~~-~~l~~~~~~~n~~~c~  528 (614)
                      ++| ++   ...+..+ ..+..+++++|.+...
T Consensus       280 ~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          280 FGI-VP---DGTLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             TTS-SC---TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred             cCc-cC---HHHHHHHHhhCcceEEecccCccc
Confidence            988 33   2223333 2466777776665443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=9.4e-22  Score=198.30  Aligned_cols=229  Identities=15%  Similarity=0.124  Sum_probs=152.3

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCC-CCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGP-FRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS  354 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~  354 (614)
                      ++++.|++++|.+.+..+.  +..+++|++|++++|.+... .+..+..+++|++|++++|.+++..+..+.. +++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSE
T ss_pred             ccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCE
Confidence            5666666666666654444  23566677777776665543 3334556667777777777666445544444 677777


Q ss_pred             EEccCC-cCCCC-CccchhccccCcEEEccCC-ccCCcCCchhhccCC-CCCEEEccCC--cccc-------cccCCccE
Q 042884          355 FNISMN-ALDGS-IPSSFGNINLLKILDLSNN-QLTGEIPEHLAVGCV-YLDFLALSNN--SLEG-------KVLSLLSG  421 (614)
Q Consensus       355 L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~-~L~~L~l~~n--~l~~-------~~~~~L~~  421 (614)
                      |++++| .+++. .+..+..+++|++|++++| .+++......+..++ +|++|++++|  .+++       ..+++|++
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~  226 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH  226 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence            777777 45542 4555666777777777777 665332233345666 7777777777  3432       23678888


Q ss_pred             EEcCCCc-CCccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC-CCCCeEeccC
Q 042884          422 LDLSCNK-LIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVFSLAF  498 (614)
Q Consensus       422 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l-~~L~~L~l~~  498 (614)
                      |++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +..   +.+..+ ..++.|++++
T Consensus       227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~  302 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINC  302 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESC
T ss_pred             EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEec
Confidence            8888888 676777789999999999999995 33222235788999999999999 442   234443 2477788999


Q ss_pred             CcCcccCCccccc
Q 042884          499 NNLSGEIPEWKAQ  511 (614)
Q Consensus       499 N~l~~~~~~~~~~  511 (614)
                      |++++..|.++..
T Consensus       303 n~l~~~~~~~~~~  315 (336)
T 2ast_B          303 SHFTTIARPTIGN  315 (336)
T ss_dssp             CCSCCTTCSSCSS
T ss_pred             ccCccccCCcccc
Confidence            9999988875543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=1e-20  Score=192.23  Aligned_cols=178  Identities=21%  Similarity=0.215  Sum_probs=87.7

Q ss_pred             EEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchh-ccccCcEEEccCCccCCcCCchhhccCCCCCEEEcc
Q 042884          329 QLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG-NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALS  407 (614)
Q Consensus       329 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  407 (614)
                      .++++++.++ .+|..+   .+.++.|+|++|.+++..+..|. .+++|++|++++|+++ .++...|..+++|++|   
T Consensus        22 ~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L---   93 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYL---   93 (361)
T ss_dssp             EEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEE---
T ss_pred             EEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEE---
Confidence            4555555554 444433   23355555555555554444454 5555555555555555 3443333333333333   


Q ss_pred             CCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc--
Q 042884          408 NNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL--  485 (614)
Q Consensus       408 ~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l--  485 (614)
                                     +|++|++++..+..|.++++|++|+|++|+++++.+..|.++++|+.|+|++|+|+++.+..|  
T Consensus        94 ---------------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  158 (361)
T 2xot_A           94 ---------------DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD  158 (361)
T ss_dssp             ---------------ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-
T ss_pred             ---------------ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC
Confidence                           333333333344445555555555555555555555555555555555555555554333333  


Q ss_pred             -cCCCCCCeEeccCCcCcccCCccccccCC--cCcccccCCcCCCCC
Q 042884          486 -VELKTLEVFSLAFNNLSGEIPEWKAQFAT--FNESSYEGNTFLCGL  529 (614)
Q Consensus       486 -~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~~~~~~n~~~c~~  529 (614)
                       ..+++|+.|+|++|+++...+..+..++.  ++.+++.+|||.|+|
T Consensus       159 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             ---CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence             34555555555555555433333444433  245555666666655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=3.8e-20  Score=196.90  Aligned_cols=165  Identities=27%  Similarity=0.373  Sum_probs=100.7

Q ss_pred             ccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEE
Q 042884          326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLA  405 (614)
Q Consensus       326 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  405 (614)
                      +|+.|++++|.++ .+|    ..+++|++|++++|.+++ +|. +..  +|++|++++|.++ .+|.    .+++|+.|+
T Consensus        81 ~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  146 (571)
T 3cvr_A           81 QITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYIN  146 (571)
T ss_dssp             TCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEE
T ss_pred             CCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEe
Confidence            4444444444444 344    113444444444444443 222 222  4444444444444 2333    234444444


Q ss_pred             ccCCccccc--ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCC-------CEEEccCCc
Q 042884          406 LSNNSLEGK--VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI-------ESLDLSYNK  476 (614)
Q Consensus       406 l~~n~l~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~ls~N~  476 (614)
                      +++|.+++.  .+++|+.|+|++|++++ +|. |.  ++|+.|+|++|+|+.+ |. |..  +|       +.|++++|+
T Consensus       147 Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          147 ADNNQLTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             CCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC-CC-CC----------CCEEEECCSSC
T ss_pred             CCCCccCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCc
Confidence            444444431  24567778888888875 555 55  8999999999999844 44 554  67       999999999


Q ss_pred             CCCCCcccccCCCCCCeEeccCCcCcccCCccccccC
Q 042884          477 LNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA  513 (614)
Q Consensus       477 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  513 (614)
                      |+ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus       219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            98 5777777899999999999999988777665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2e-19  Score=167.76  Aligned_cols=179  Identities=21%  Similarity=0.231  Sum_probs=128.2

Q ss_pred             cEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccC
Q 042884          304 KTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSN  383 (614)
Q Consensus       304 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  383 (614)
                      +.++.+++.++.++..   ..+++++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG---IPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCSC---CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCCC---CCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            4566666666654332   2357777788777776 55555555577777777777777766666677777777777777


Q ss_pred             CccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCC
Q 042884          384 NQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN  463 (614)
Q Consensus       384 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  463 (614)
                      |+++ .+|...+..++                  +|++|++++|++++..+..|..+++|++|++++|++++..+..|..
T Consensus        86 n~l~-~~~~~~~~~l~------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  146 (208)
T 2o6s_A           86 NQLQ-SLPNGVFDKLT------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR  146 (208)
T ss_dssp             SCCC-CCCTTTTTTCT------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             CcCC-ccCHhHhcCcc------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence            7776 55555544444                  4455555555666566667888889999999999988877777888


Q ss_pred             CCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884          464 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF  512 (614)
Q Consensus       464 l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  512 (614)
                      +++|+.|++++|.+.+       .++.|+.|+++.|++++.+|.+++.+
T Consensus       147 l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          147 LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            8999999999997764       34578888899999988888765544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=4.2e-19  Score=166.74  Aligned_cols=158  Identities=19%  Similarity=0.233  Sum_probs=111.9

Q ss_pred             cEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCcc
Q 042884          353 ISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH  432 (614)
Q Consensus       353 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~  432 (614)
                      +.+++++|.++. +|..+  ...+++|++++|++++..|...|..+++|+                  .|+|++|++++.
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~------------------~L~L~~N~i~~i   72 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLR------------------KINFSNNKITDI   72 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCC------------------EEECCSSCCCEE
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCC------------------EEECCCCcCCEE
Confidence            467777877774 44433  234677888888877443555554444444                  444444455555


Q ss_pred             CCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884          433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF  512 (614)
Q Consensus       433 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  512 (614)
                      .+.+|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+
T Consensus        73 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  152 (220)
T 2v70_A           73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL  152 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred             CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC
Confidence            66677778888888888888877777777788888888888888887777777778888888888888887777777777


Q ss_pred             CCcCcccccCCcCCCCCCC
Q 042884          513 ATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       513 ~~l~~~~~~~n~~~c~~~~  531 (614)
                      ++++.+++++|++.|+|+.
T Consensus       153 ~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          153 HSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TTCCEEECCSCCEECSGGG
T ss_pred             CCCCEEEecCcCCcCCCch
Confidence            7888888888888887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=4.2e-19  Score=165.48  Aligned_cols=181  Identities=23%  Similarity=0.201  Sum_probs=139.7

Q ss_pred             cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884          279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS  358 (614)
Q Consensus       279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~  358 (614)
                      +.++.+++.+. .+|..   ..+++++|++++|.+.++.+..|..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus        10 ~~v~c~~~~l~-~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCcc-CCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence            56777777776 56643   3467888888888888877777888889999999999887 6676666668899999999


Q ss_pred             CCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCcccc
Q 042884          359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIG  438 (614)
Q Consensus       359 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~  438 (614)
                      +|.+++..+..|..+++|++|++++|+++ .+|...+..+++|+                  .|++++|++++..+..|.
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~------------------~L~l~~N~l~~~~~~~~~  145 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLK------------------DLRLYQNQLKSVPDGVFD  145 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC------------------EEECCSSCCSCCCTTTTT
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCC------------------EEECCCCccceeCHHHhc
Confidence            99988777777888999999999999988 66666555544444                  445555555556666688


Q ss_pred             CCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 042884          439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT  490 (614)
Q Consensus       439 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~  490 (614)
                      .+++|++|++++|.+.+       .+++|+.|+++.|++++.+|+.++.++.
T Consensus       146 ~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          146 RLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             cCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            88999999999997763       4568889999999999999988776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=6.9e-19  Score=166.41  Aligned_cols=157  Identities=24%  Similarity=0.246  Sum_probs=126.4

Q ss_pred             ccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEE
Q 042884          326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLA  405 (614)
Q Consensus       326 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  405 (614)
                      +-+.++.+++.++ .+|..+   .++|++|+|++|.+++..+..|..+++|++|++++|++. .+|...|..+++|+   
T Consensus        20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~---   91 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLT---   91 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC---
T ss_pred             eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcC---
Confidence            4567888888886 777655   478999999999999888888999999999999999987 77776665555444   


Q ss_pred             ccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc
Q 042884          406 LSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  485 (614)
Q Consensus       406 l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l  485 (614)
                                     .|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus        92 ---------------~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~  155 (229)
T 3e6j_A           92 ---------------VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF  155 (229)
T ss_dssp             ---------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred             ---------------EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence                           4445555555566677888999999999999998 557778889999999999999997777788


Q ss_pred             cCCCCCCeEeccCCcCcccCC
Q 042884          486 VELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       486 ~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      ..+++|+.|++++|++.+.++
T Consensus       156 ~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          156 DRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTCTTCCEEECTTSCBCTTBG
T ss_pred             hCCCCCCEEEeeCCCccCCcc
Confidence            889999999999999987655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=8.6e-19  Score=172.17  Aligned_cols=190  Identities=23%  Similarity=0.306  Sum_probs=137.0

Q ss_pred             CcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEc
Q 042884          278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI  357 (614)
Q Consensus       278 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L  357 (614)
                      +..+.+..+.+.+..+   ...+++|++|++++|.+..+.  .+..+++|+.|++++|.++ .++.  +..+++|++|++
T Consensus        26 ~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l   97 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFL   97 (291)
T ss_dssp             HHHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEEC
T ss_pred             HHHHHhcCCCcccccc---hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEEC
Confidence            3344566666654333   346777888888888877653  3667778888888888887 4444  334778888888


Q ss_pred             cCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccc
Q 042884          358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI  437 (614)
Q Consensus       358 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~  437 (614)
                      ++|.+++.  ..+..+++|++|++++|+++ .++.  +..                  +++|+.|++++|++++.  ..+
T Consensus        98 ~~n~l~~~--~~l~~l~~L~~L~L~~n~i~-~~~~--l~~------------------l~~L~~L~l~~n~l~~~--~~l  152 (291)
T 1h6t_A           98 DENKVKDL--SSLKDLKKLKSLSLEHNGIS-DING--LVH------------------LPQLESLYLGNNKITDI--TVL  152 (291)
T ss_dssp             CSSCCCCG--GGGTTCTTCCEEECTTSCCC-CCGG--GGG------------------CTTCCEEECCSSCCCCC--GGG
T ss_pred             CCCcCCCC--hhhccCCCCCEEECCCCcCC-CChh--hcC------------------CCCCCEEEccCCcCCcc--hhh
Confidence            88887753  33777788888888888776 3322  233                  44555556666666544  568


Q ss_pred             cCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884          438 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       438 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  504 (614)
                      ..+++|++|++++|++++..+  +..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++..
T Consensus       153 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence            889999999999999987755  8889999999999999985 44 388899999999999998853

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=8e-19  Score=164.81  Aligned_cols=157  Identities=24%  Similarity=0.276  Sum_probs=121.0

Q ss_pred             cEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCcc
Q 042884          353 ISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH  432 (614)
Q Consensus       353 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~  432 (614)
                      +.++++++.++. +|..+.  ++++.|++++|.++ .++...|..+++                  |+.|+|++|++++.
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~------------------L~~L~Ls~N~i~~~   71 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKK------------------LRRIDLSNNQISEL   71 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTT------------------CCEEECCSSCCCEE
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCC------------------CCEEECCCCcCCCc
Confidence            567888888874 444433  67888888888887 566655544444                  44445555555556


Q ss_pred             CCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884          433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF  512 (614)
Q Consensus       433 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  512 (614)
                      .|..|.++++|++|+|++|+++++.+..|.++++|++|++++|++++..|..|..+++|++|+|++|++++..+..+..+
T Consensus        72 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  151 (220)
T 2v9t_B           72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL  151 (220)
T ss_dssp             CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence            77788888888888888888887777778888888888888888888888888888888888888888887777777888


Q ss_pred             CCcCcccccCCcCCCCCCC
Q 042884          513 ATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       513 ~~l~~~~~~~n~~~c~~~~  531 (614)
                      ++++.+++++|||.|+|++
T Consensus       152 ~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          152 RAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             TTCCEEECCSSCEECSGGG
T ss_pred             CCCCEEEeCCCCcCCCCcc
Confidence            8888888888888888864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=1.4e-18  Score=159.53  Aligned_cols=154  Identities=25%  Similarity=0.398  Sum_probs=89.3

Q ss_pred             cEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCc-cccCCCcCCEEECcCCcCCC
Q 042884          377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPP-QIGNLTRIQTLNLSHNNLTG  455 (614)
Q Consensus       377 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~  455 (614)
                      +++++++|.++ .+|..++.   ++++|++++|                  ++++..+. .|..+++|++|+|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n------------------~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~   68 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDN------------------ELGRISSDGLFGRLPHLVKLELKRNQLTG   68 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT---TCSEEECCSC------------------CCCSBCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred             CEEEcCCCCcC-cCccCCCC---CCCEEECCCC------------------cCCccCCccccccCCCCCEEECCCCCCCC
Confidence            67889999887 78876532   4555555555                  44444332 35555556666666665555


Q ss_pred             CCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC----
Q 042884          456 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL----  531 (614)
Q Consensus       456 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~----  531 (614)
                      ..|..|.++++|++|++++|+|++..|..|..+++|++|++++|++++..|..+..+++++.+++++|++.|+|+.    
T Consensus        69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~  148 (192)
T 1w8a_A           69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA  148 (192)
T ss_dssp             BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred             cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH
Confidence            5555555555566666666665555555555555566666666665555555555555555555666666555543    


Q ss_pred             ------------CCCCCCCCCCCCCCCCCCCCC
Q 042884          532 ------------PICRSPATTPEASIGNERDDN  552 (614)
Q Consensus       532 ------------~~c~~~~~~~~~~~~~~~~~~  552 (614)
                                  ..|..|....+..........
T Consensus       149 ~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~  181 (192)
T 1w8a_A          149 EWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE  181 (192)
T ss_dssp             HHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTT
T ss_pred             HHHHHcCCCCCCCCCCCChHHcCCChhhCcHhh
Confidence                        146667666655554444333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=160.19  Aligned_cols=151  Identities=23%  Similarity=0.369  Sum_probs=120.1

Q ss_pred             cEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCC
Q 042884          377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL  456 (614)
Q Consensus       377 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  456 (614)
                      +++++++|.++ .+|..+                     ++.+++|++++|+++ .+|..|.++++|++|+|++|.++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~---------------------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i   69 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---------------------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL   69 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---------------------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             CEEEcCCCCCC-cCCCCC---------------------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEe
Confidence            57888888887 777654                     345666777777776 5667888899999999999999988


Q ss_pred             CCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCCC----
Q 042884          457 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP----  532 (614)
Q Consensus       457 ~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~----  532 (614)
                      .+..|.++++|++|++++|+|+++.|..|..+++|++|+|++|+++...+..+..+++++.+++++|||.|+|+..    
T Consensus        70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~  149 (193)
T 2wfh_A           70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSD  149 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred             CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHH
Confidence            8888999999999999999999888888888999999999999998776667888888999999999999988542    


Q ss_pred             ------------CCCCCCCCCCCCCCCCCC
Q 042884          533 ------------ICRSPATTPEASIGNERD  550 (614)
Q Consensus       533 ------------~c~~~~~~~~~~~~~~~~  550 (614)
                                  .|..|....+........
T Consensus       150 ~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~  179 (193)
T 2wfh_A          150 WVKSEYKEPGIARCAGPGEMADKLLLTTPS  179 (193)
T ss_dssp             HHHHSSCCCSCCBEEESGGGTTCBTTTSCG
T ss_pred             HHHhccCCCCCcCcCCchHHCCCCcccCCh
Confidence                        466666655555544443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=9.8e-19  Score=177.59  Aligned_cols=160  Identities=28%  Similarity=0.281  Sum_probs=116.6

Q ss_pred             ccCEEEccCCccccCCChhhhh-cCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEE
Q 042884          326 RLRQLDVSNNNFQGHIPLEIGD-ILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFL  404 (614)
Q Consensus       326 ~L~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  404 (614)
                      .++.|++++|.++ .++...+. .+++|++|+|++|++++..+..|..+++|++|+|++|+++ .++...|..+++|++ 
T Consensus        40 ~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~-  116 (361)
T 2xot_A           40 YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEV-  116 (361)
T ss_dssp             TCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCE-
T ss_pred             CCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCE-
Confidence            4566666666666 34444433 4677777777777777666677777888888888888877 566655555444444 


Q ss_pred             EccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCC---CCCCCCCEEEccCCcCCCCC
Q 042884          405 ALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF---SNLKHIESLDLSYNKLNGKI  481 (614)
Q Consensus       405 ~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~ls~N~l~~~~  481 (614)
                                       |+|++|++++..+..|.++++|++|+|++|+++++.+..|   ..+++|+.|+|++|+|+.+.
T Consensus       117 -----------------L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          117 -----------------LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             -----------------EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             -----------------EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence                             4444455555667788899999999999999998777766   56899999999999999777


Q ss_pred             cccccCCCC--CCeEeccCCcCcccC
Q 042884          482 PHQLVELKT--LEVFSLAFNNLSGEI  505 (614)
Q Consensus       482 ~~~l~~l~~--L~~L~l~~N~l~~~~  505 (614)
                      +..+..++.  ++.|++++|++.+.+
T Consensus       180 ~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          180 LTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             HHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             HHHhhhccHhhcceEEecCCCccCCc
Confidence            777888876  488999999998654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=2.6e-18  Score=182.75  Aligned_cols=186  Identities=25%  Similarity=0.344  Sum_probs=130.5

Q ss_pred             CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEE
Q 042884          277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN  356 (614)
Q Consensus       277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~  356 (614)
                      +++.|++++|.+.+ +|..+   .++|++|++++|.++.++    ..+++|+.|++++|.++ .+|. +.   .+|++|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEE
T ss_pred             CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEE
Confidence            67777777777763 66542   256777777777777543    34567777777777776 3665 32   2677777


Q ss_pred             ccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc--ccCCccEEEcCCCcCCccCC
Q 042884          357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK--VLSLLSGLDLSCNKLIGHIP  434 (614)
Q Consensus       357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~L~~L~L~~n~l~~~~~  434 (614)
                      +++|.+++ +|.   .+++|+.|++++|.++ .+|.    .+++|+.|++++|++++.  ..++|+.|+|++|+++ .+|
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCC
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCC-chh
Confidence            77777775 333   4677777777777776 4555    456777777777776652  1267888888888888 555


Q ss_pred             ccccCCCcC-------CEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC
Q 042884          435 PQIGNLTRI-------QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK  489 (614)
Q Consensus       435 ~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~  489 (614)
                      . |..  +|       +.|+|++|.|+. +|..+..+++|+.|++++|++++.+|..+..++
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            5 554  67       999999999995 566667799999999999999998888877653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.2e-17  Score=179.63  Aligned_cols=189  Identities=22%  Similarity=0.290  Sum_probs=115.6

Q ss_pred             cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884          279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS  358 (614)
Q Consensus       279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~  358 (614)
                      ..+.+..+.+.+..+   +..++.|+.|++++|.+..+.  .+..+++|+.|+|++|.++ .++.  +..+++|+.|+|+
T Consensus        24 ~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           24 IKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECC
T ss_pred             HHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECc
Confidence            334445555543333   345566666666666666543  4566667777777777766 3433  3336777777777


Q ss_pred             CCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCcccc
Q 042884          359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIG  438 (614)
Q Consensus       359 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~  438 (614)
                      +|.+.+.  ..+..+++|+.|+|++|.+. .++.  +..+++                  |+.|+|++|++++.  ..+.
T Consensus        96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~------------------L~~L~Ls~N~l~~l--~~l~  150 (605)
T 1m9s_A           96 ENKIKDL--SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQ------------------LESLYLGNNKITDI--TVLS  150 (605)
T ss_dssp             SSCCCCC--TTSTTCTTCCEEECTTSCCC-CCGG--GGGCTT------------------CSEEECCSSCCCCC--GGGG
T ss_pred             CCCCCCC--hhhccCCCCCEEEecCCCCC-CCcc--ccCCCc------------------cCEEECCCCccCCc--hhhc
Confidence            7776642  25666777777777777776 3332  233444                  44444444444433  4566


Q ss_pred             CCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884          439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       439 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  504 (614)
                      .+++|+.|+|++|.+++..|  +..+++|+.|+|++|+|++. | .+..+++|+.|+|++|++++.
T Consensus       151 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            77777777777777776655  67777777777777777743 3 466777777777777777653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=7.6e-18  Score=165.43  Aligned_cols=173  Identities=21%  Similarity=0.332  Sum_probs=142.5

Q ss_pred             ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCC
Q 042884          272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPN  351 (614)
Q Consensus       272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~  351 (614)
                      ...+++|+.|++++|.+. .++.  +..+++|++|++++|.+.++.+  +..+++|+.|++++|.++ .++. + ..+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-L-KDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-G-TTCTT
T ss_pred             hhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-h-ccCCC
Confidence            346789999999999998 5554  7889999999999999998765  889999999999999998 4543 4 44899


Q ss_pred             ccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCc
Q 042884          352 LISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIG  431 (614)
Q Consensus       352 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~  431 (614)
                      |++|++++|.+++.  ..+..+++|++|++++|.++ .++  .+..+                  ++|+.|++++|++++
T Consensus       114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l------------------~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DIT--VLSRL------------------TKLDTLSLEDNQISD  170 (291)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC-CCG--GGGGC------------------TTCSEEECCSSCCCC
T ss_pred             CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC-cch--hhccC------------------CCCCEEEccCCcccc
Confidence            99999999999865  56889999999999999998 442  23444                  445555566666664


Q ss_pred             cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC
Q 042884          432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG  479 (614)
Q Consensus       432 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  479 (614)
                      ..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++..
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred             chh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence            444  88999999999999999875  348999999999999999985

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=5.4e-17  Score=153.39  Aligned_cols=155  Identities=26%  Similarity=0.349  Sum_probs=91.7

Q ss_pred             CcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEc
Q 042884          278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI  357 (614)
Q Consensus       278 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L  357 (614)
                      .+.++.+++.+. .+|..+   .++|++|++++|.+.++.+..|..+++|+.|++++|.++ .++               
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~---------------   80 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALP---------------   80 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC---------------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcC---------------
Confidence            355666666665 555431   245555555555555554545555555555555555553 344               


Q ss_pred             cCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccc
Q 042884          358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI  437 (614)
Q Consensus       358 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~  437 (614)
                               +..|..+++|++|++++|+++ .+|...|..+++|++|                  +|++|+++ .+|..+
T Consensus        81 ---------~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L------------------~Ls~N~l~-~lp~~~  131 (229)
T 3e6j_A           81 ---------VGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL------------------FMCCNKLT-ELPRGI  131 (229)
T ss_dssp             ---------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE------------------ECCSSCCC-SCCTTG
T ss_pred             ---------hhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE------------------eccCCccc-ccCccc
Confidence                     344445555555555555554 4444443333333333                  23333333 445566


Q ss_pred             cCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCC
Q 042884          438 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI  481 (614)
Q Consensus       438 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~  481 (614)
                      ..+++|++|+|++|++++..+..|..+++|+.|++++|.+....
T Consensus       132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            77888999999999998887788888999999999999887543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.1e-17  Score=179.91  Aligned_cols=188  Identities=21%  Similarity=0.276  Sum_probs=102.0

Q ss_pred             cCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCE
Q 042884          124 LKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEE  203 (614)
Q Consensus       124 L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  203 (614)
                      +..+.+..+.+.    .+.  .+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+. .++.  +..+++|+.
T Consensus        23 l~~l~l~~~~i~----~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           23 TIKDNLKKKSVT----DAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHTTCSCTT----SEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCE
T ss_pred             HHHHhccCCCcc----ccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCE
Confidence            334455555544    222  245667777777777777643 3 4677777777777777777 3443  667777777


Q ss_pred             EEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEc
Q 042884          204 LHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDL  283 (614)
Q Consensus       204 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L  283 (614)
                      |+|++|.+.+ ++  .+..+++|+.|++++|.+...                              +.+..+++|+.|+|
T Consensus        92 L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l------------------------------~~l~~l~~L~~L~L  138 (605)
T 1m9s_A           92 LFLDENKIKD-LS--SLKDLKKLKSLSLEHNGISDI------------------------------NGLVHLPQLESLYL  138 (605)
T ss_dssp             EECCSSCCCC-CT--TSTTCTTCCEEECTTSCCCCC------------------------------GGGGGCTTCSEEEC
T ss_pred             EECcCCCCCC-Ch--hhccCCCCCEEEecCCCCCCC------------------------------ccccCCCccCEEEC
Confidence            7777777652 22  455566666666666554321                              12334555666666


Q ss_pred             cCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCC
Q 042884          284 SHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALD  363 (614)
Q Consensus       284 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~  363 (614)
                      ++|.+.+ ++  .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.++ .++ .+ ..+++|+.|+|++|.+.
T Consensus       139 s~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~l~-~l-~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          139 GNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-AL-AGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CSSCCCC-CG--GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GG-TTCTTCSEEECCSEEEE
T ss_pred             CCCccCC-ch--hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-CCh-HH-ccCCCCCEEEccCCcCc
Confidence            6665553 22  14455555555555555554433  444455555555555554 222 12 22444444444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=5.7e-18  Score=169.73  Aligned_cols=264  Identities=11%  Similarity=0.111  Sum_probs=163.3

Q ss_pred             CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcC--------CCCCCeEECcCCccccc
Q 042884           94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCS--------LMHLQELYKVNNDLRGS  165 (614)
Q Consensus        94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~--------l~~L~~L~L~~n~i~~~  165 (614)
                      +++|++|+|++|.+..   +...-+. ++.++.+.+..+       .+++.+|.+        +++|+.|++.+ .++.+
T Consensus        48 l~~L~~LdLs~n~i~~---~~~~~~~-~~~~~~~~~~~~-------~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I  115 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKM---YSGKAGT-YPNGKFYIYMAN-------FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNI  115 (329)
T ss_dssp             CTTCCEEEEEEEEECC---EEESSSS-SGGGCCEEECTT-------EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEE
T ss_pred             hccCeEEecCcceeEE---ecCcccc-cccccccccccc-------ccCHHHhcccccccccccCCCcEEECCc-cccch
Confidence            5566666666666541   0000001 222333333333       344455666        67777777766 66656


Q ss_pred             cCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCc---cccCcccccCCCCcc-EEEccCCccccccc
Q 042884          166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR---IPISLEPLFNHSRLK-IFDAENNELNAEIT  241 (614)
Q Consensus       166 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~  241 (614)
                      .+.+|.+|++|+.+++.+|.+. .++..+|..+.++..+....+...   ..+....|.++..|+ .+.+....      
T Consensus       116 ~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~------  188 (329)
T 3sb4_A          116 EDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG------  188 (329)
T ss_dssp             CTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC------
T ss_pred             hHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC------
Confidence            6666777777777777777666 666666666655555554442210   011222333444444 22222111      


Q ss_pred             ccccCCCCCccceeeeccCCCCCCCCCCcc----ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCC
Q 042884          242 ESYSLTTPNFQLQYLLLSSGYGDGATFPKF----LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPF  317 (614)
Q Consensus       242 ~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  317 (614)
                                               .++..    .....+++.+.+.++-.. .....+...+++|+.+++++|+++.+.
T Consensus       189 -------------------------~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~  242 (329)
T 3sb4_A          189 -------------------------KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIP  242 (329)
T ss_dssp             -------------------------CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEEC
T ss_pred             -------------------------cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceec
Confidence                                     01110    012345566666554221 112222335888999999988888888


Q ss_pred             CCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc-EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhc
Q 042884          318 RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI-SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV  396 (614)
Q Consensus       318 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  396 (614)
                      ..+|.++.+|+.+++.+| +. .++...|..+++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++ .++...|.
T Consensus       243 ~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~  318 (329)
T 3sb4_A          243 DFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFG  318 (329)
T ss_dssp             TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTC
T ss_pred             HhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhc
Confidence            888999999999999887 65 78888888888998 999988 777777889999999999999999988 88888888


Q ss_pred             cCCCCCEEEc
Q 042884          397 GCVYLDFLAL  406 (614)
Q Consensus       397 ~~~~L~~L~l  406 (614)
                      ++++|+.++.
T Consensus       319 ~~~~L~~ly~  328 (329)
T 3sb4_A          319 NGVPSKLIYK  328 (329)
T ss_dssp             TTCCCCEEEC
T ss_pred             CCcchhhhcc
Confidence            9988888763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=5e-18  Score=164.00  Aligned_cols=168  Identities=21%  Similarity=0.282  Sum_probs=108.8

Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEc
Q 042884          302 KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDL  381 (614)
Q Consensus       302 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  381 (614)
                      .+..++++++.+..+.  .+..+++|+.|++++|.++ .++ .+. .+++|++|++++|++++..+  +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            3445555555555433  3455566666666666665 454 232 36667777777766665443  666677777777


Q ss_pred             cCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCC
Q 042884          382 SNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF  461 (614)
Q Consensus       382 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  461 (614)
                      ++|+++ .+|...                     .++|+.|++++|++++.  ..+..+++|++|++++|++++.  ..+
T Consensus        93 ~~N~l~-~l~~~~---------------------~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l  146 (263)
T 1xeu_A           93 NRNRLK-NLNGIP---------------------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VML  146 (263)
T ss_dssp             CSSCCS-CCTTCC---------------------CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGG
T ss_pred             CCCccC-CcCccc---------------------cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHH
Confidence            777766 343321                     13455555555555543  2477788888888888888765  357


Q ss_pred             CCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884          462 SNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       462 ~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  504 (614)
                      ..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       147 ~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          147 GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            7788888888888888765  5677788888888888888755

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=1e-17  Score=167.85  Aligned_cols=287  Identities=13%  Similarity=0.052  Sum_probs=207.4

Q ss_pred             CCCCCEEeCCCCCCCccchHHHhh-ccCCcEEeccCccccCCccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhc--
Q 042884           44 FTNLEYSTLSGSSLHISLLQSIAS-LFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGES--  120 (614)
Q Consensus        44 l~~L~~L~Ls~n~~~~~~~~~~~~-l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~--  120 (614)
                      +.+++.|+++++ +.......+.. +.+|++|++++|........   .+.++.++.+.+..+.      +|+..+..  
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~---~~~~~~~~~~~~~~~~------I~~~aF~~~~   93 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK---AGTYPNGKFYIYMANF------VPAYAFSNVV   93 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES---SSSSGGGCCEEECTTE------ECTTTTEEEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc---cccccccccccccccc------cCHHHhcccc
Confidence            456777777764 23344455555 78899999999987621111   1222335555555553      44555555  


Q ss_pred             ------CCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCC----CCCcc
Q 042884          121 ------TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQ----LTGSI  190 (614)
Q Consensus       121 ------l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~  190 (614)
                            +++|+.+++.. .++    .|++.+|.++++|+.+++.+|.+..+.+.+|.++.++..+.+..+.    .. .+
T Consensus        94 ~~~~~g~~~L~~l~L~~-~i~----~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~-~i  167 (329)
T 3sb4_A           94 NGVTKGKQTLEKVILSE-KIK----NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN-RW  167 (329)
T ss_dssp             TTEEEECTTCCC-CBCT-TCC----EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST-TT
T ss_pred             cccccccCCCcEEECCc-ccc----chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc-cc
Confidence                  89999999998 777    7888899999999999999999998889999999988888876632    22 34


Q ss_pred             CCCCCCCCCCCC-EEEcccCcCccccCcccc---cCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCC
Q 042884          191 ASSPLAHLTSIE-ELHLSDNHFRIPISLEPL---FNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGA  266 (614)
Q Consensus       191 ~~~~~~~l~~L~-~L~L~~n~~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  266 (614)
                      ...+|..+..|+ .+.+....-   ++...+   ....++..+.+.++-...                            
T Consensus       168 ~~~~f~~~~~L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~l~~~----------------------------  216 (329)
T 3sb4_A          168 EHFAFIEGEPLETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGKLDNA----------------------------  216 (329)
T ss_dssp             TTSCEEESCCCEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEECCCHH----------------------------
T ss_pred             cccccccccccceeEEecCCCc---HHHHHhhcccCccccceEEEeeeecHH----------------------------
Confidence            555577777777 555544321   111111   123344444443321100                            


Q ss_pred             CCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccC-EEEccCCccccCCChhh
Q 042884          267 TFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLR-QLDVSNNNFQGHIPLEI  345 (614)
Q Consensus       267 ~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~-~L~l~~n~i~~~~~~~~  345 (614)
                      .+......+++|+.+++++|.+. .+|...|.++.+|+++++.+| +..+...+|.++.+|+ .+++.+ .++ .++...
T Consensus       217 ~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~a  292 (329)
T 3sb4_A          217 DFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGA  292 (329)
T ss_dssp             HHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTT
T ss_pred             HHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhh
Confidence            00011123789999999999998 888888999999999999998 8888999999999999 999998 776 788888


Q ss_pred             hhcCCCccEEEccCCcCCCCCccchhccccCcEEEc
Q 042884          346 GDILPNLISFNISMNALDGSIPSSFGNINLLKILDL  381 (614)
Q Consensus       346 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  381 (614)
                      |..+++|+.++++.|.++.+.+.+|.++++|+.++.
T Consensus       293 F~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          293 FMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             hhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            888999999999999999888899999999999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=3.7e-17  Score=149.92  Aligned_cols=85  Identities=26%  Similarity=0.411  Sum_probs=56.2

Q ss_pred             EEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcC
Q 042884          422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNL  501 (614)
Q Consensus       422 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l  501 (614)
                      |+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++
T Consensus        59 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             EECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            33333344445555666667777777777777766666677777777777777777766677777777777777777777


Q ss_pred             cccCC
Q 042884          502 SGEIP  506 (614)
Q Consensus       502 ~~~~~  506 (614)
                      ++.++
T Consensus       139 ~c~c~  143 (192)
T 1w8a_A          139 NCNCH  143 (192)
T ss_dssp             CCSGG
T ss_pred             cCcCc
Confidence            76544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=9.3e-17  Score=148.04  Aligned_cols=153  Identities=18%  Similarity=0.284  Sum_probs=89.0

Q ss_pred             CCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCC
Q 042884          322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYL  401 (614)
Q Consensus       322 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L  401 (614)
                      ..+++|+.|++++|.++ .+| .+. .+++|++|++++|.++.  +..+..+++|++|++++|.+++..|..+ ..    
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~----  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL-SG----  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC-TT----
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh-cC----
Confidence            34455666666666665 444 222 25666666666665442  2345566666666666666653333332 22    


Q ss_pred             CEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCCCCCCEEEccCCcCCCC
Q 042884          402 DFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGK  480 (614)
Q Consensus       402 ~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ls~N~l~~~  480 (614)
                                    +++|++|++++|++++..+..+..+++|++|++++|. ++.. + .+..+++|+.|++++|++++ 
T Consensus       111 --------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-  173 (197)
T 4ezg_A          111 --------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-  173 (197)
T ss_dssp             --------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-
T ss_pred             --------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-
Confidence                          3344444444455554555666777777777777776 5533 3 56777777777777777774 


Q ss_pred             CcccccCCCCCCeEeccCCcCc
Q 042884          481 IPHQLVELKTLEVFSLAFNNLS  502 (614)
Q Consensus       481 ~~~~l~~l~~L~~L~l~~N~l~  502 (614)
                      ++ .+..+++|+.|++++|++.
T Consensus       174 ~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          174 YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CT-TGGGCSSCCEEEECBC---
T ss_pred             hH-HhccCCCCCEEEeeCcccC
Confidence            33 5667777777777777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=2e-15  Score=154.36  Aligned_cols=201  Identities=14%  Similarity=0.169  Sum_probs=120.9

Q ss_pred             CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      +|++|+.+++++|.+. .++...|. +.+|+.+.+.. .+..+...+|.++++|+.+++..+ ++ .++...|.. .+|+
T Consensus       178 ~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~  251 (401)
T 4fdw_A          178 YCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGIT  251 (401)
T ss_dssp             TCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCS
T ss_pred             CcccCCeeecCCCcce-EechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCcc
Confidence            4444444444444444 34444343 34555555542 244444555555555555555543 33 445555553 5566


Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCCccC----CcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcC
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLT----GEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKL  429 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l  429 (614)
                      .+.+. +.++.+...+|.++++|+.+++.+|.+.    ..++...|.+|++|+.+++.+                   .+
T Consensus       252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-------------------~i  311 (401)
T 4fdw_A          252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-------------------SI  311 (401)
T ss_dssp             EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-------------------TC
T ss_pred             EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-------------------ce
Confidence            66663 3344455566666677777766665542    136666676666666665542                   23


Q ss_pred             CccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC-CCCeEeccCCcCc
Q 042884          430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSLAFNNLS  502 (614)
Q Consensus       430 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~  502 (614)
                      +.+...+|.++++|+.++|..+ ++.+...+|.++ +|+.+++++|.+....+..|.+++ .++.+++..+.+.
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            3345567778888888888544 666777788888 888888888887766677777774 6788888777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=1e-15  Score=157.38  Aligned_cols=313  Identities=15%  Similarity=0.108  Sum_probs=204.5

Q ss_pred             CcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCccc
Q 042884          140 RILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEP  219 (614)
Q Consensus       140 ~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  219 (614)
                      .|...+|.++.+|+.+.+.. .++.+...+|.+|++|+.+++..+ +. .++..+|.++.+|+.+.+..+- . .+...+
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l-~-~i~~~a  135 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLML-K-SIGVEA  135 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTC-C-EECTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCce-e-eeccee
Confidence            34455666666677776653 355555666666777777766543 44 5666666666666665554432 1 223333


Q ss_pred             ccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhc
Q 042884          220 LFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLEN  299 (614)
Q Consensus       220 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~  299 (614)
                      |.++..++........                              ......|..+++|+.+.+.++. . .++...|.+
T Consensus       136 F~~~~~~~~~~~~~~~------------------------------~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~  183 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVT------------------------------VIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSG  183 (394)
T ss_dssp             TTTCCCSEEECCTTCC------------------------------EECTTTTTTCTTCCEEECCTTC-C-EECTTTTTT
T ss_pred             eecccccccccCcccc------------------------------ccchhhhcccCCCcEEecCCcc-c-eeccccccC
Confidence            4433322221111100                              0112345677788888886553 2 456666778


Q ss_pred             CCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEE
Q 042884          300 NTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKIL  379 (614)
Q Consensus       300 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  379 (614)
                      +.+|+.+.+..+ +..+...+|..+..|+.+.+..+...  +....+. ..+|+.+.+... ++......|.++..|+.+
T Consensus       184 c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~  258 (394)
T 4fs7_A          184 CGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESI  258 (394)
T ss_dssp             CTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEE
T ss_pred             CCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCC-ceecccccccccccceeE
Confidence            888888887665 56666777888888888877765432  3333333 567888777643 333455677788888888


Q ss_pred             EccCCccCCcCCchhhccCCCCCEEEccCCcccc---cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCC
Q 042884          380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL  456 (614)
Q Consensus       380 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  456 (614)
                      .+..+..  .++...|..+..++.+....+.+..   ....+|+.+.+.++ ++.+...+|.++.+|+.+++.++ ++.+
T Consensus       259 ~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I  334 (394)
T 4fs7_A          259 SIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI  334 (394)
T ss_dssp             EECCTTC--EECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred             EcCCCcc--eeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE
Confidence            8877643  4666677788888887776665443   23567788877654 56566778999999999999654 7777


Q ss_pred             CCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCC
Q 042884          457 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN  499 (614)
Q Consensus       457 ~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N  499 (614)
                      ...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus       335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            7789999999999999877 66677788999999999998765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=2.6e-16  Score=142.39  Aligned_cols=133  Identities=23%  Similarity=0.282  Sum_probs=86.1

Q ss_pred             CcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCC
Q 042884          376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG  455 (614)
Q Consensus       376 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  455 (614)
                      .+.+++++|.++ .+|..+                     +++++.|++++|++++..+..|..+++|++|++++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---------------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~   66 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---------------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS   66 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             CCEEEecCCCCc-cCCCCC---------------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE
Confidence            467788888877 666544                     3345555555555555555556666667777777776666


Q ss_pred             CCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          456 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       456 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      ..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++++.+++++|++.|+|+
T Consensus        67 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            666666666677777777777665555556666667777777776665555545566666666777777766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.9e-16  Score=146.03  Aligned_cols=150  Identities=21%  Similarity=0.310  Sum_probs=115.1

Q ss_pred             CCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCc
Q 042884          349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNK  428 (614)
Q Consensus       349 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~  428 (614)
                      +++|+.|++++|.++ .+| .+..+++|++|++++|.+. .++ . +..                  +++|++|++++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~------------------l~~L~~L~l~~n~   99 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISG------------------LSNLERLRIMGKD   99 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTT------------------CTTCCEEEEECTT
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhc------------------CCCCCEEEeECCc
Confidence            556677777777666 333 4666667777777776554 322 1 223                  4566666677777


Q ss_pred             CCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCc-CCCCCcccccCCCCCCeEeccCCcCcccCCc
Q 042884          429 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK-LNGKIPHQLVELKTLEVFSLAFNNLSGEIPE  507 (614)
Q Consensus       429 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~-l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  507 (614)
                      +++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|++++ ++ 
T Consensus       100 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-  175 (197)
T 4ezg_A          100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-  175 (197)
T ss_dssp             CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-
T ss_pred             cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-
Confidence            776677889999999999999999998788889999999999999998 66 555 68999999999999999986 44 


Q ss_pred             cccccCCcCcccccCCcC
Q 042884          508 WKAQFATFNESSYEGNTF  525 (614)
Q Consensus       508 ~~~~~~~l~~~~~~~n~~  525 (614)
                      .+..+++++.+++++|+.
T Consensus       176 ~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             TGGGCSSCCEEEECBC--
T ss_pred             HhccCCCCCEEEeeCccc
Confidence            478899999999999975

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.2e-16  Score=154.19  Aligned_cols=170  Identities=19%  Similarity=0.230  Sum_probs=125.7

Q ss_pred             CCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884          275 QHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS  354 (614)
Q Consensus       275 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~  354 (614)
                      +.++..++++++.+. .++.  +..+++|++|++++|.++.+.  .+..+++|+.|++++|.++ .++.  +..+++|++
T Consensus        18 l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCE
T ss_pred             HHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccC-CChh--hccCCCCCE
Confidence            445666777778777 3442  567888888888888888754  5777888888888888887 5555  444888999


Q ss_pred             EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCC
Q 042884          355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP  434 (614)
Q Consensus       355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~  434 (614)
                      |++++|++++..+  +.. ++|++|++++|+++ .++.  +..+++                  |+.|++++|++++. +
T Consensus        90 L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~-~~~~--l~~l~~------------------L~~L~Ls~N~i~~~-~  144 (263)
T 1xeu_A           90 LSVNRNRLKNLNG--IPS-ACLSRLFLDNNELR-DTDS--LIHLKN------------------LEILSIRNNKLKSI-V  144 (263)
T ss_dssp             EECCSSCCSCCTT--CCC-SSCCEEECCSSCCS-BSGG--GTTCTT------------------CCEEECTTSCCCBC-G
T ss_pred             EECCCCccCCcCc--ccc-CcccEEEccCCccC-CChh--hcCccc------------------ccEEECCCCcCCCC-h
Confidence            9999998886432  223 88999999999987 4442  344444                  44455555555543 3


Q ss_pred             ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCC
Q 042884          435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK  480 (614)
Q Consensus       435 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  480 (614)
                       .+..+++|++|++++|++++.  ..+..+++|+.|++++|.+...
T Consensus       145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             578889999999999999877  6788999999999999998854

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=7.8e-19  Score=187.87  Aligned_cols=178  Identities=22%  Similarity=0.268  Sum_probs=98.9

Q ss_pred             CCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCc-------------CCCCCccchhccccCcEEE-ccCCccC
Q 042884          322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA-------------LDGSIPSSFGNINLLKILD-LSNNQLT  387 (614)
Q Consensus       322 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~  387 (614)
                      ...+.|+.|++++|.++ .+|..+.. +++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            34667778888888886 77777766 7778888876664             4556677788888888887 6666543


Q ss_pred             CcCCchhhc-------cCCCCCEEEccCCcccc----cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCC
Q 042884          388 GEIPEHLAV-------GCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL  456 (614)
Q Consensus       388 ~~~~~~~~~-------~~~~L~~L~l~~n~l~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  456 (614)
                       .++...+.       ....|+.|++++|.+++    ..+++|+.|+|++|+++ .+|..|+.+++|+.|+|++|.++++
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l  501 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV  501 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC
Confidence             22221100       01124445555554443    11334555555555555 4444555555555555555555542


Q ss_pred             CCcCCCCCCCCCEEEccCCcCCCCC-cccccCCCCCCeEeccCCcCcccC
Q 042884          457 IPSTFSNLKHIESLDLSYNKLNGKI-PHQLVELKTLEVFSLAFNNLSGEI  505 (614)
Q Consensus       457 ~~~~~~~l~~L~~L~ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~  505 (614)
                       | .++.+++|+.|++++|+|++.. |..+..+++|+.|++++|++++.+
T Consensus       502 -p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          502 -D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             -G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             -c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence             3 4555555555555555555443 555555555555555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=5e-15  Score=151.46  Aligned_cols=265  Identities=14%  Similarity=0.165  Sum_probs=179.4

Q ss_pred             CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCC
Q 042884           94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM  173 (614)
Q Consensus        94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  173 (614)
                      +..++.+.+... ++   .++...+..+ +|+.+.+..+ ++    .|...+|.+. +|+.+.+.. .++.+.+.+|.+|
T Consensus       112 ~~~l~~i~ip~~-i~---~I~~~aF~~~-~L~~i~l~~~-i~----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c  179 (401)
T 4fdw_A          112 LKGYNEIILPNS-VK---SIPKDAFRNS-QIAKVVLNEG-LK----SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYC  179 (401)
T ss_dssp             CSSCSEEECCTT-CC---EECTTTTTTC-CCSEEECCTT-CC----EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTC
T ss_pred             cCCccEEEECCc-cC---EehHhhcccC-CccEEEeCCC-cc----EECHHhcCCC-CceEEEeCC-CccEehHHHhhCc
Confidence            456666666553 22   4444444423 6788777654 44    5666677764 688888875 6666667778888


Q ss_pred             CCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccc
Q 042884          174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQL  253 (614)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  253 (614)
                      ++|+.+++.+|.+. .++..+|. ..+|+.+.+..+ +. .+...+|.++++|+.+++..+ +..+...           
T Consensus       180 ~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~-----------  243 (401)
T 4fdw_A          180 YNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQE-----------  243 (401)
T ss_dssp             TTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTT-----------
T ss_pred             ccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccc-----------
Confidence            88888888888877 77777776 477888888754 44 556667778888888777653 3322222           


Q ss_pred             eeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCC-----CCCCCCCCCCCccC
Q 042884          254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLA-----GPFRLPIHSHKRLR  328 (614)
Q Consensus       254 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~  328 (614)
                                       .|.. .+|+.+.+. +.+. .++...|.++++|+.+.+.++.+.     .+...+|.++++|+
T Consensus       244 -----------------aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~  303 (401)
T 4fdw_A          244 -----------------AFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA  303 (401)
T ss_dssp             -----------------TTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred             -----------------cccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence                             2222 467777773 3344 566666778888888888776654     45667788888888


Q ss_pred             EEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCC-CCCEEEcc
Q 042884          329 QLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCV-YLDFLALS  407 (614)
Q Consensus       329 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~l~  407 (614)
                      .+++.+ .++ .++...|..+++|+.+.+..+ ++.+...+|.++ +|+.+++.+|.+. .++...|.+++ .++.+++.
T Consensus       304 ~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          304 RFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             EECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEEC
T ss_pred             eEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeC
Confidence            888874 465 677777777888888888554 665667788888 8888888888776 66776676664 56677766


Q ss_pred             CCcc
Q 042884          408 NNSL  411 (614)
Q Consensus       408 ~n~l  411 (614)
                      .+.+
T Consensus       379 ~~~~  382 (401)
T 4fdw_A          379 AESV  382 (401)
T ss_dssp             GGGH
T ss_pred             HHHH
Confidence            6543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=1.8e-18  Score=185.09  Aligned_cols=197  Identities=20%  Similarity=0.186  Sum_probs=144.8

Q ss_pred             cCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCC-------------CCCCCCCCCCCCCccCEEE-ccCCccc
Q 042884          273 YHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS-------------LAGPFRLPIHSHKRLRQLD-VSNNNFQ  338 (614)
Q Consensus       273 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~-------------i~~~~~~~~~~l~~L~~L~-l~~n~i~  338 (614)
                      ..+++|+.|++++|++. .+|.. ++.+++|+.|++++|.             ..+..+..+..+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            56788899999999887 77877 6788888888887664             3444445566677777777 5555443


Q ss_pred             cCCChh------hhh-cCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcc
Q 042884          339 GHIPLE------IGD-ILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL  411 (614)
Q Consensus       339 ~~~~~~------~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  411 (614)
                       .++..      +.. ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+ ..+             
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l-------------  485 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AAL-------------  485 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGC-------------
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh-hcC-------------
Confidence             22210      000 02358888999888886 455 888888999999998888 787754 344             


Q ss_pred             cccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCC-CcCCCCCCCCCEEEccCCcCCCCCccc---ccC
Q 042884          412 EGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLI-PSTFSNLKHIESLDLSYNKLNGKIPHQ---LVE  487 (614)
Q Consensus       412 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~~~~---l~~  487 (614)
                           ++|+.|+|++|++++ +| .++.+++|++|+|++|++++.. |..+..+++|+.|++++|++++..|..   +..
T Consensus       486 -----~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~  558 (567)
T 1dce_A          486 -----RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM  558 (567)
T ss_dssp             -----TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred             -----CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence                 455555666666664 45 7899999999999999999887 899999999999999999999765532   334


Q ss_pred             CCCCCeEec
Q 042884          488 LKTLEVFSL  496 (614)
Q Consensus       488 l~~L~~L~l  496 (614)
                      +++|+.|++
T Consensus       559 lp~L~~L~l  567 (567)
T 1dce_A          559 LPSVSSILT  567 (567)
T ss_dssp             CTTCSEEEC
T ss_pred             CcccCccCC
Confidence            788998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=6.5e-17  Score=178.49  Aligned_cols=181  Identities=23%  Similarity=0.256  Sum_probs=108.8

Q ss_pred             CCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhh
Q 042884          268 FPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGD  347 (614)
Q Consensus       268 ~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~  347 (614)
                      .|..+..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++. .+..+..+++|+.|+|++|.|+ .+|..+..
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            3455667888888888888887 6777644 78888888888888884 4566788888888888888888 77877665


Q ss_pred             cCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCC
Q 042884          348 ILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN  427 (614)
Q Consensus       348 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n  427 (614)
                       +++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+......+..+++++|.+++..+..|+.|++++|
T Consensus       292 -l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          292 -CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD  369 (727)
T ss_dssp             -GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred             -CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence             888888888888887 557778888888888888888886666655322122234678888888888888888888777


Q ss_pred             --------cCCccCCccccCCCcCCEEECcCCcCC
Q 042884          428 --------KLIGHIPPQIGNLTRIQTLNLSHNNLT  454 (614)
Q Consensus       428 --------~l~~~~~~~~~~l~~L~~L~L~~n~l~  454 (614)
                              .+.+..+..+..+..++...+++|-+.
T Consensus       370 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          370 GEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --------------------------------CCC
T ss_pred             cccccccCCccccccchhhcccccceeeeeccccc
Confidence                    222233333444445555555666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.1e-15  Score=138.06  Aligned_cols=130  Identities=26%  Similarity=0.298  Sum_probs=90.6

Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccC
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHI  433 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~  433 (614)
                      ++++++|.++. +|..+  .++|++|++++|.++ .+|.. |..+                  ++|+.|+|++|++++..
T Consensus        14 ~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~-~~~l------------------~~L~~L~Ls~N~i~~i~   70 (193)
T 2wfh_A           14 VVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKE-LSNY------------------KHLTLIDLSNNRISTLS   70 (193)
T ss_dssp             EEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGG-GGGC------------------TTCCEEECCSSCCCCCC
T ss_pred             EEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHH-hhcc------------------cCCCEEECCCCcCCEeC
Confidence            44555555442 22222  135566666666665 55532 2333                  33334444444445566


Q ss_pred             CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      +.+|.++++|++|+|++|+++++.+..|.++++|+.|++++|+|+...+..|..+++|+.|++++|++.+...
T Consensus        71 ~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            6778888999999999999998888889999999999999999997777778899999999999999986543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=6.2e-17  Score=178.67  Aligned_cols=175  Identities=22%  Similarity=0.273  Sum_probs=95.3

Q ss_pred             CCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhc
Q 042884          317 FRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV  396 (614)
Q Consensus       317 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  396 (614)
                      .+..+..++.|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+ .
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~  290 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-G  290 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-G
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh-c
Confidence            3455667777777777777776 67776664 777777777777777 66677777777777777777777 666664 5


Q ss_pred             cCCCCCEEEccCCcccc-----cccCCccEEEcCCCcCCccCCccccCCCc-CCEEECcCCcCCCCCCcCCCCCCCCCEE
Q 042884          397 GCVYLDFLALSNNSLEG-----KVLSLLSGLDLSCNKLIGHIPPQIGNLTR-IQTLNLSHNNLTGLIPSTFSNLKHIESL  470 (614)
Q Consensus       397 ~~~~L~~L~l~~n~l~~-----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L  470 (614)
                      .+++|++|+|++|.++.     ..+++|+.|+|++|++++.+|..+..+.. +..++|++|.+++.+|.      .|+.|
T Consensus       291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l  364 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI  364 (727)
T ss_dssp             GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence            66677777777766653     22466777888888888777777655422 23467888888877665      34566


Q ss_pred             EccCC--------cCCCCCcccccCCCCCCeEeccCCcCc
Q 042884          471 DLSYN--------KLNGKIPHQLVELKTLEVFSLAFNNLS  502 (614)
Q Consensus       471 ~ls~N--------~l~~~~~~~l~~l~~L~~L~l~~N~l~  502 (614)
                      ++++|        .+.+..+..+..+..++...+++|-+.
T Consensus       365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -------------------------------------CCC
T ss_pred             EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            66666        333344444555566667777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2.2e-15  Score=134.99  Aligned_cols=134  Identities=20%  Similarity=0.183  Sum_probs=97.0

Q ss_pred             CCCccEEEccCCcCC-CCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCC
Q 042884          349 LPNLISFNISMNALD-GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN  427 (614)
Q Consensus       349 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n  427 (614)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+  ..+..+                  ++|++|++++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l------------------~~L~~L~Ls~N   81 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKL------------------PKLKKLELSEN   81 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCC------------------SSCCEEEEESC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccC------------------CCCCEEECcCC
Confidence            466777777777776 566666777888888888888876 33  223333                  34445555555


Q ss_pred             cCCccCCccccCCCcCCEEECcCCcCCCCCC-cCCCCCCCCCEEEccCCcCCCCCc---ccccCCCCCCeEeccCCcCcc
Q 042884          428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIP---HQLVELKTLEVFSLAFNNLSG  503 (614)
Q Consensus       428 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~---~~l~~l~~L~~L~l~~N~l~~  503 (614)
                      ++++.+|..+..+++|++|++++|.+++... ..+..+++|+.|++++|++++..+   ..+..+++|++|++++|.+..
T Consensus        82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            5555566777778888888888888886533 678888888888888888886554   478888888999888888773

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.60  E-value=4e-14  Score=145.45  Aligned_cols=329  Identities=13%  Similarity=0.115  Sum_probs=199.8

Q ss_pred             CCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCc
Q 042884           89 QGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPW  168 (614)
Q Consensus        89 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~  168 (614)
                      .+|.++.+|+.+.+..+ ++   .+.+..+..+++|+.+++..+ ++    .+...+|.++.+|+.+.+..+ +......
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~---~I~~~aF~~c~~L~~i~lp~~-l~----~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VR---EIGEFAFENCSKLEIINIPDS-VK----MIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CC---EECTTTTTTCTTCCEECCCTT-CC----EECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             HHhhCCCCceEEEeCCC-cc---CcchhHhhCCCCCcEEEeCCC-ce----EccchhhcccccchhhcccCc-eeeecce
Confidence            47888888888888643 43   555555544788888888654 33    566667888888887777644 4445666


Q ss_pred             cccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCC
Q 042884          169 CVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTT  248 (614)
Q Consensus       169 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  248 (614)
                      +|.++..++......  +. .+...+|.++++|+.+.+.++..  .+....|.++.+|+.+++..+ +..+..       
T Consensus       135 aF~~~~~~~~~~~~~--~~-~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~-------  201 (394)
T 4fs7_A          135 AFKGCDFKEITIPEG--VT-VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRD-------  201 (394)
T ss_dssp             TTTTCCCSEEECCTT--CC-EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECT-------
T ss_pred             eeecccccccccCcc--cc-ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCc-------
Confidence            777765444333222  22 45566688888888888876543  355566777777777776554 222222       


Q ss_pred             CCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccC
Q 042884          249 PNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLR  328 (614)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  328 (614)
                                           ..+..+..|+.+.+..+...  +... +.....|+.+.+.. .+..+....|.++..++
T Consensus       202 ---------------------~~F~~~~~L~~i~~~~~~~~--i~~~-~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~  256 (394)
T 4fs7_A          202 ---------------------YCFAECILLENMEFPNSLYY--LGDF-ALSKTGVKNIIIPD-SFTELGKSVFYGCTDLE  256 (394)
T ss_dssp             ---------------------TTTTTCTTCCBCCCCTTCCE--ECTT-TTTTCCCCEEEECT-TCCEECSSTTTTCSSCC
T ss_pred             ---------------------hhhccccccceeecCCCceE--eehh-hcccCCCceEEECC-Cceecccccccccccce
Confidence                                 22334445555544443221  1222 22334566666543 23334455566666677


Q ss_pred             EEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccC
Q 042884          329 QLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN  408 (614)
Q Consensus       329 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~  408 (614)
                      .+.+..+..  .++...+..+..++.+....+.+.   ...|..+.+|+.+.+.++ ++ .+++..|.+|.+|+.+++.+
T Consensus       257 ~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~  329 (394)
T 4fs7_A          257 SISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPY  329 (394)
T ss_dssp             EEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCT
T ss_pred             eEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCC
Confidence            776665533  344444555666666666554332   345667777777777654 44 66677777777666665532


Q ss_pred             CcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC
Q 042884          409 NSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL  488 (614)
Q Consensus       409 n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l  488 (614)
                      +                   ++.+...+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ +. .+..+|.++
T Consensus       330 ~-------------------v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c  387 (394)
T 4fs7_A          330 L-------------------VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDT  387 (394)
T ss_dssp             T-------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTT
T ss_pred             c-------------------ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCC
Confidence            1                   33344567888888888888766 66677788888888888888765 33 334567777


Q ss_pred             CCCCeE
Q 042884          489 KTLEVF  494 (614)
Q Consensus       489 ~~L~~L  494 (614)
                      ++|+.+
T Consensus       388 ~~L~~I  393 (394)
T 4fs7_A          388 TKFKWI  393 (394)
T ss_dssp             CEEEEE
T ss_pred             CCCcEE
Confidence            777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.3e-14  Score=131.17  Aligned_cols=82  Identities=24%  Similarity=0.285  Sum_probs=65.6

Q ss_pred             CCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884          425 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       425 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  504 (614)
                      ++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.
T Consensus        60 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           60 SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            33333334455577888899999999999888888888899999999999999877666778889999999999999876


Q ss_pred             CC
Q 042884          505 IP  506 (614)
Q Consensus       505 ~~  506 (614)
                      +|
T Consensus       140 ~~  141 (177)
T 2o6r_A          140 CP  141 (177)
T ss_dssp             HH
T ss_pred             Cc
Confidence            65

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=1.1e-14  Score=130.49  Aligned_cols=106  Identities=25%  Similarity=0.233  Sum_probs=72.0

Q ss_pred             CCEEEccCCcccc---cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcC
Q 042884          401 LDFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL  477 (614)
Q Consensus       401 L~~L~l~~n~l~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l  477 (614)
                      .+.+++++|.++.   ..++.+++|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|++|++++|+|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            4567777776654   2246677777777777766666677777777777777777766666667777777777777777


Q ss_pred             CCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884          478 NGKIPHQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       478 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      +++.+..|..+++|++|++++|++++..+
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            76555566677777777777777765543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.8e-14  Score=129.05  Aligned_cols=133  Identities=23%  Similarity=0.281  Sum_probs=111.4

Q ss_pred             CCCCcEEEccCCCCC-CCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          275 QHDLEYVDLSHTKMN-GEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       275 l~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      .++|++|++++|.+. +.+|.. +..+++|++|++++|.+.++  ..+..+++|+.|++++|.+++.+|..+.. +++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCC
Confidence            478999999999997 677766 68899999999999999986  67888999999999999998556655544 89999


Q ss_pred             EEEccCCcCCCCC-ccchhccccCcEEEccCCccCCcCCc---hhhccCCCCCEEEccCCccc
Q 042884          354 SFNISMNALDGSI-PSSFGNINLLKILDLSNNQLTGEIPE---HLAVGCVYLDFLALSNNSLE  412 (614)
Q Consensus       354 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~n~l~  412 (614)
                      +|++++|.+++.. +..+..+++|++|++++|.++ .+|.   ..+..+++|++|++++|.+.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence            9999999998653 378899999999999999998 5665   56677788887777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=4.4e-15  Score=130.07  Aligned_cols=127  Identities=21%  Similarity=0.233  Sum_probs=70.8

Q ss_pred             CCccEEEccCCcCC-CCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCc
Q 042884          350 PNLISFNISMNALD-GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNK  428 (614)
Q Consensus       350 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~  428 (614)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++ +  ..+..                  +++|++|++++|.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~~------------------l~~L~~L~Ls~n~   75 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I--ANLPK------------------LNKLKKLELSDNR   75 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C--TTCCC------------------CTTCCEEECCSSC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c--hhhhc------------------CCCCCEEECCCCc
Confidence            44555555555555 4445555555666666666665552 2  11222                  2334444444444


Q ss_pred             CCccCCccccCCCcCCEEECcCCcCCCC-CCcCCCCCCCCCEEEccCCcCCCCCc---ccccCCCCCCeEecc
Q 042884          429 LIGHIPPQIGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIP---HQLVELKTLEVFSLA  497 (614)
Q Consensus       429 l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~~~---~~l~~l~~L~~L~l~  497 (614)
                      +++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|+++
T Consensus        76 i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            4444555555566666677766666653 23556666677777777776665444   356666667766665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=2.7e-14  Score=127.84  Aligned_cols=110  Identities=25%  Similarity=0.270  Sum_probs=98.6

Q ss_pred             CccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEecc
Q 042884          418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA  497 (614)
Q Consensus       418 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~  497 (614)
                      ..+.+++++|+++. +|..+.  ++|++|+|++|+++++.|..|.++++|++|++++|+|+++.+..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35789999999985 555443  889999999999999999999999999999999999998888888999999999999


Q ss_pred             CCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          498 FNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       498 ~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      +|++++..+..+..+++++.+++++||+.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998777778899999999999999999986

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.8e-14  Score=126.12  Aligned_cols=129  Identities=22%  Similarity=0.309  Sum_probs=108.5

Q ss_pred             CCCCcEEEccCCCCC-CCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          275 QHDLEYVDLSHTKMN-GEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       275 l~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      .++|+.|++++|.+. +.+|.. +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++.+|..+.. +++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCC
T ss_pred             CccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCC
Confidence            468999999999998 677764 68899999999999999986  67888999999999999998556655444 89999


Q ss_pred             EEEccCCcCCCC-CccchhccccCcEEEccCCccCCcCCc---hhhccCCCCCEEEccC
Q 042884          354 SFNISMNALDGS-IPSSFGNINLLKILDLSNNQLTGEIPE---HLAVGCVYLDFLALSN  408 (614)
Q Consensus       354 ~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~  408 (614)
                      +|++++|.+++. .+..+..+++|++|++++|.++ .+|.   ..+..+++|+.|++++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCCC
Confidence            999999999874 3478999999999999999998 5555   5677888888888753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=3.3e-14  Score=127.70  Aligned_cols=104  Identities=24%  Similarity=0.261  Sum_probs=72.6

Q ss_pred             CEEEccCCcccc---cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCC
Q 042884          402 DFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN  478 (614)
Q Consensus       402 ~~L~l~~n~l~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~  478 (614)
                      +.+++++|.++.   ..++.|+.|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|+.|+|++|+|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            567777776654   23466777777777777666777777777777777777777666666677777777777777777


Q ss_pred             CCCcccccCCCCCCeEeccCCcCcccC
Q 042884          479 GKIPHQLVELKTLEVFSLAFNNLSGEI  505 (614)
Q Consensus       479 ~~~~~~l~~l~~L~~L~l~~N~l~~~~  505 (614)
                      ++.+..|..+++|++|++++|++.+..
T Consensus        95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           95 SIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             eeCHHHhccccCCCEEEeCCCCccccc
Confidence            555555777777777777777777543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=8.3e-14  Score=125.08  Aligned_cols=109  Identities=22%  Similarity=0.242  Sum_probs=95.3

Q ss_pred             ccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccC
Q 042884          419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAF  498 (614)
Q Consensus       419 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~  498 (614)
                      -+.+++++|+++ .+|..+.  ++|++|+|++|++++..|..|.++++|+.|+|++|+|+++.+..|..+++|++|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            368999999997 5555554  7899999999999999899999999999999999999977777788999999999999


Q ss_pred             CcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          499 NNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       499 N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      |++++..+..+..+++++.+++++|++.|+|+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99997777678889999999999999999885

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=9.9e-14  Score=125.12  Aligned_cols=134  Identities=17%  Similarity=0.185  Sum_probs=111.6

Q ss_pred             ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCC
Q 042884          272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPN  351 (614)
Q Consensus       272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~  351 (614)
                      +..+++|+.|++++|.+. .+|. +....++|++|++++|.++++  ..+..+++|+.|++++|.++ .+|...+..+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~   89 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   89 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence            456789999999999998 5564 234445999999999999986  67889999999999999998 667666566999


Q ss_pred             ccEEEccCCcCCCCCcc--chhccccCcEEEccCCccCCcCCch---hhccCCCCCEEEccCCccc
Q 042884          352 LISFNISMNALDGSIPS--SFGNINLLKILDLSNNQLTGEIPEH---LAVGCVYLDFLALSNNSLE  412 (614)
Q Consensus       352 L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~l~  412 (614)
                      |++|++++|.+.. +|.  .+..+++|+.|++++|.+. .+|..   ++..+++|+.|++++|...
T Consensus        90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999999974 454  7889999999999999998 77775   5678888888888887654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=5.3e-14  Score=126.92  Aligned_cols=130  Identities=16%  Similarity=0.162  Sum_probs=76.1

Q ss_pred             CCCccEEEccCCcCCCCCccchhccc-cCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCC
Q 042884          349 LPNLISFNISMNALDGSIPSSFGNIN-LLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN  427 (614)
Q Consensus       349 l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n  427 (614)
                      +++|++|++++|.++.. +. +..+. +|++|++++|.++ .+ . .+..                  +++|++|++++|
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~-~~-~-~l~~------------------l~~L~~L~Ls~N   74 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIR-KL-D-GFPL------------------LRRLKTLLVNNN   74 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCC-EE-C-CCCC------------------CSSCCEEECCSS
T ss_pred             cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCC-cc-c-cccc------------------CCCCCEEECCCC
Confidence            45566666666666533 33 33333 6666666666655 22 1 1122                  344555555555


Q ss_pred             cCCccCCccccCCCcCCEEECcCCcCCCCCC-cCCCCCCCCCEEEccCCcCCCCCccc----ccCCCCCCeEeccCCcCc
Q 042884          428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQ----LVELKTLEVFSLAFNNLS  502 (614)
Q Consensus       428 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~~~----l~~l~~L~~L~l~~N~l~  502 (614)
                      ++++..+..|..+++|++|++++|.++...+ ..+..+++|+.|++++|.+. .+|..    +..+++|+.||+++|...
T Consensus        75 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            5555544555677777777777777754322 25667777777777777776 34443    666777777777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=9.9e-16  Score=141.23  Aligned_cols=132  Identities=22%  Similarity=0.298  Sum_probs=84.3

Q ss_pred             hhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEE
Q 042884          344 EIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLD  423 (614)
Q Consensus       344 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~  423 (614)
                      .+.. +++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+ ..+                  ++|+.|+
T Consensus        43 ~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~------------------~~L~~L~   99 (198)
T 1ds9_A           43 TLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVA------------------DTLEELW   99 (198)
T ss_dssp             HHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHH------------------HHCSEEE
T ss_pred             HHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcC------------------CcCCEEE
Confidence            4443 6777777777777765 44 6777777777777777776 555433 223                  3344444


Q ss_pred             cCCCcCCccCCccccCCCcCCEEECcCCcCCCCCC-cCCCCCCCCCEEEccCCcCCCCCccc----------ccCCCCCC
Q 042884          424 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQ----------LVELKTLE  492 (614)
Q Consensus       424 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~~~----------l~~l~~L~  492 (614)
                      +++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..          +..+++|+
T Consensus       100 L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          100 ISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             EEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred             CcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence            44444443 23 46677778888888887775433 45677778888888888776554432          66677777


Q ss_pred             eEeccCCcCc
Q 042884          493 VFSLAFNNLS  502 (614)
Q Consensus       493 ~L~l~~N~l~  502 (614)
                      .||  +|+++
T Consensus       178 ~Ld--~~~i~  185 (198)
T 1ds9_A          178 KLD--GMPVD  185 (198)
T ss_dssp             EEC--CGGGT
T ss_pred             EEC--CcccC
Confidence            776  66655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.44  E-value=5.6e-12  Score=129.37  Aligned_cols=102  Identities=11%  Similarity=0.133  Sum_probs=52.5

Q ss_pred             CcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCc---cccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCC
Q 042884          123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNND---LRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLT  199 (614)
Q Consensus       123 ~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  199 (614)
                      .|+.+.+-.. ++    .|.+.+|.++.+|+.+.+..|.   ++.+...+|.++.+|+.+.+..+ +. .++..+|..+.
T Consensus        65 ~L~sI~iP~s-vt----~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~  137 (394)
T 4gt6_A           65 VLTSVQIPDT-VT----EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCE  137 (394)
T ss_dssp             CCCEEEECTT-CC----EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCT
T ss_pred             cCEEEEECCC-ee----EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhc
Confidence            3555555432 33    4445556666666666665442   44444555666666665555433 33 45555555666


Q ss_pred             CCCEEEcccCcCccccCcccccCCCCccEEEccC
Q 042884          200 SIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN  233 (614)
Q Consensus       200 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~  233 (614)
                      +|+.+.+..+..  .+....|..+..|+.+.+..
T Consensus       138 ~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          138 ELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             TCCEEECCTTCC--EECTTTTTTCTTCCEEECCT
T ss_pred             ccccccccceee--eecccceecccccccccccc
Confidence            666666544321  23334455555555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.44  E-value=6.5e-12  Score=128.89  Aligned_cols=330  Identities=14%  Similarity=0.190  Sum_probs=185.8

Q ss_pred             CCCCCCC-CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCc---CCCCCCCcCchhhcCCCCCCeEECcCCcccc
Q 042884           89 QGFPHFK-SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFT---LSTNSSRILDRGLCSLMHLQELYKVNNDLRG  164 (614)
Q Consensus        89 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~---l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~  164 (614)
                      .+|.+++ .|+.+.+..+ ++   .+.+..+..+++|+.+.+..+.   ++    .|...+|.++.+|+.+.+..+ ++.
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt---~Ig~~AF~~C~~L~~i~~~~n~p~~l~----~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VT---EIGSNAFYNCTSLKRVTIQDNKPSCVK----KIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CC---EECTTTTTTCTTCCEEEEGGGCCCCCC----EECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             hhccCCCCcCEEEEECCC-ee---EEhHHHhhCCccCceEeecCCCCCeee----EechhhchhcccceeeccCCc-cce
Confidence            4677774 5888888654 33   4555555448899999887653   44    566678888888888887654 555


Q ss_pred             ccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccc
Q 042884          165 SLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESY  244 (614)
Q Consensus       165 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  244 (614)
                      +...+|..+.+|+.+.+..+ +. .++..+|..+..|+.+.+..+- . .+...+|.+ ..|+.+.+..+.. ...    
T Consensus       128 I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF~~-~~l~~i~ip~~~~-~i~----  197 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDSV-T-AIEERAFTG-TALTQIHIPAKVT-RIG----  197 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTTC-C-EECTTTTTT-CCCSEEEECTTCC-EEC----
T ss_pred             ehhhhhhhhcccccccccce-ee-eecccceeccccccccccccee-e-Eeccccccc-cceeEEEECCccc-ccc----
Confidence            66778888999999998654 44 6777788889999999887663 2 344444543 4577776654321 111    


Q ss_pred             cCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCC
Q 042884          245 SLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH  324 (614)
Q Consensus       245 ~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l  324 (614)
                                              ...+..+.+++......+... .+...++........-..           .+...
T Consensus       198 ------------------------~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~~~~  241 (394)
T 4gt6_A          198 ------------------------TNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALI-----------RYPSQ  241 (394)
T ss_dssp             ------------------------TTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEE-----------ECCTT
T ss_pred             ------------------------cchhhhccccceecccccccc-cccceeeccccccccccc-----------ccccc
Confidence                                    122334445555544433322 111111111111000000           01111


Q ss_pred             CccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEE
Q 042884          325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFL  404 (614)
Q Consensus       325 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  404 (614)
                      ..+..+.+.. .+. .+....|..+..|+.+.+.++... +...+|.++++|+.+.+. +.++ .+++..|.+|.+|+.+
T Consensus       242 ~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i  316 (394)
T 4gt6_A          242 REDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSI  316 (394)
T ss_dssp             CCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEE
T ss_pred             cccceEEcCC-cce-EcccceeeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEE
Confidence            2233333322 122 333444555666666666544332 445667777777777775 3344 6677777777777666


Q ss_pred             EccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCccc
Q 042884          405 ALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ  484 (614)
Q Consensus       405 ~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  484 (614)
                      ++..+                   ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++... .  ..
T Consensus       317 ~lp~~-------------------v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~  373 (394)
T 4gt6_A          317 DIPEG-------------------ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NA  373 (394)
T ss_dssp             ECCTT-------------------CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HT
T ss_pred             EeCCc-------------------ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h--hh
Confidence            66432                   22234466777777777777543 65566677777888888887777543 1  34


Q ss_pred             ccCCCCCCeEeccCCcC
Q 042884          485 LVELKTLEVFSLAFNNL  501 (614)
Q Consensus       485 l~~l~~L~~L~l~~N~l  501 (614)
                      +.....|+.+.+..|.+
T Consensus       374 ~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          374 ISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CBCCCCC----------
T ss_pred             hhccCCCCEEEeCCCCE
Confidence            56667777777766544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.1e-15  Score=139.07  Aligned_cols=151  Identities=23%  Similarity=0.279  Sum_probs=114.2

Q ss_pred             CCCccEEEccCCcCCCCCcc------chhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEE
Q 042884          349 LPNLISFNISMNALDGSIPS------SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGL  422 (614)
Q Consensus       349 l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L  422 (614)
                      ...++.++++.+.+++..|.      .+..+++|++|++++|.++ .+|  .+..+++|++|++++              
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~--------------   79 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGR--------------   79 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEE--------------
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCC--------------
Confidence            45566666666666655554      8999999999999999998 577  345555555555555              


Q ss_pred             EcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCc-ccccCCCCCCeEeccCCcC
Q 042884          423 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVFSLAFNNL  501 (614)
Q Consensus       423 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l  501 (614)
                          |+++ .+|..+..+++|++|++++|++++. | .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++
T Consensus        80 ----n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           80 ----NLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ----EEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ----CCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence                4554 4566777889999999999999975 3 68889999999999999985433 4788999999999999999


Q ss_pred             cccCCcc----------ccccCCcCcccccCCcC
Q 042884          502 SGEIPEW----------KAQFATFNESSYEGNTF  525 (614)
Q Consensus       502 ~~~~~~~----------~~~~~~l~~~~~~~n~~  525 (614)
                      ++.+|..          +..+++++.++  +|+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            8776542          56677777665  5553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=9.3e-13  Score=132.83  Aligned_cols=85  Identities=21%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             CccEEEcCC-CcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEec
Q 042884          418 LLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSL  496 (614)
Q Consensus       418 ~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l  496 (614)
                      +|+.|+|++ |.+++..+..|.++++|++|+|++|+|++++|..|.++++|+.|+|++|+|+++.+..|..++ |+.|+|
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            455555553 555555555555555555555555555555555555555555555555555544444444443 555555


Q ss_pred             cCCcCcc
Q 042884          497 AFNNLSG  503 (614)
Q Consensus       497 ~~N~l~~  503 (614)
                      ++|++.+
T Consensus       111 ~~N~~~c  117 (347)
T 2ifg_A          111 SGNPLHC  117 (347)
T ss_dssp             CSSCCCC
T ss_pred             eCCCccC
Confidence            5555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=1.2e-12  Score=131.92  Aligned_cols=105  Identities=16%  Similarity=0.202  Sum_probs=54.6

Q ss_pred             EcCCC-cCCccCCccccCCCcCCEEECcC-CcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCc
Q 042884          423 DLSCN-KLIGHIPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN  500 (614)
Q Consensus       423 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~  500 (614)
                      +++++ +++ .+|. +..+++|++|+|++ |.++++.+..|.++++|+.|+|++|+|+++.|..|.++++|+.|+|++|+
T Consensus        14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            44444 444 2344 55555555555553 55555555555555555555555555555555555555555555555555


Q ss_pred             CcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          501 LSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       501 l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      |++..+..+..+. |+.+++.+|++.|+|+
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            5544443333333 5555555555555553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=1.7e-13  Score=138.79  Aligned_cols=165  Identities=21%  Similarity=0.206  Sum_probs=83.3

Q ss_pred             CccCEEEccCCccccCCChhhhh----cCCCccEEEccCCcCCCCCccch-hccccCcEEEccCCccCCcCCchhhccCC
Q 042884          325 KRLRQLDVSNNNFQGHIPLEIGD----ILPNLISFNISMNALDGSIPSSF-GNINLLKILDLSNNQLTGEIPEHLAVGCV  399 (614)
Q Consensus       325 ~~L~~L~l~~n~i~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  399 (614)
                      +.|+.|++++|.++......+..    ..++|++|+|++|.++......+ ..+++|+.|+|++|.+++.....+...+.
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45667777777665222222211    12466677777766653322222 23456666666666665322222211000


Q ss_pred             CCCEEEccCCcccccccCCccEEEcCCCcCCc----cCCccccCCCcCCEEECcCCcCCCCC----CcCCCCCCCCCEEE
Q 042884          400 YLDFLALSNNSLEGKVLSLLSGLDLSCNKLIG----HIPPQIGNLTRIQTLNLSHNNLTGLI----PSTFSNLKHIESLD  471 (614)
Q Consensus       400 ~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~  471 (614)
                                    ...+.|++|+|++|.+++    .++..+..+++|++|+|++|.++...    ...+...++|++|+
T Consensus       152 --------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~  217 (372)
T 3un9_A          152 --------------HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN  217 (372)
T ss_dssp             --------------STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred             --------------hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence                          012345555555555542    12233455666666666666665321    23445556677777


Q ss_pred             ccCCcCCCC----CcccccCCCCCCeEeccCCcCcc
Q 042884          472 LSYNKLNGK----IPHQLVELKTLEVFSLAFNNLSG  503 (614)
Q Consensus       472 ls~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~~  503 (614)
                      |++|.|+..    ++..+...++|++|+|++|+++.
T Consensus       218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            777766532    22334445667777777776653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.19  E-value=1.5e-09  Score=110.68  Aligned_cols=53  Identities=11%  Similarity=0.168  Sum_probs=26.2

Q ss_pred             CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC
Q 042884          434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL  488 (614)
Q Consensus       434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l  488 (614)
                      ..+|.++.+|+.++|..+ ++.+...+|.++++|+++.+..+ ++.+...+|.++
T Consensus       303 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          303 PRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             hhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            344555555555555432 44444455555555555555443 333444445444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=1.9e-12  Score=130.91  Aligned_cols=142  Identities=18%  Similarity=0.222  Sum_probs=65.5

Q ss_pred             CccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchh-----ccccCcEEEccCCccCCcCCchh---hc
Q 042884          325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG-----NINLLKILDLSNNQLTGEIPEHL---AV  396 (614)
Q Consensus       325 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~---~~  396 (614)
                      ++|++|++++|.+++.....+...+++|+.|+|++|.++......+.     ..++|++|+|++|.+++.....+   +.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            34555555555554222223333345566666666666533222221     24556666666666642111111   12


Q ss_pred             cCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCC----CcCCCCCCCCCEEEc
Q 042884          397 GCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLI----PSTFSNLKHIESLDL  472 (614)
Q Consensus       397 ~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l  472 (614)
                      .+++|++|++++|.+++...              ..++..+...++|++|+|++|.++...    ...+...++|++|+|
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~--------------~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~L  246 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGL--------------ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL  246 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHH--------------HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             cCCCcCEEeCCCCCCCcHHH--------------HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEec
Confidence            33344444444443332100              011233444556666666666655321    122334456666666


Q ss_pred             cCCcCCCC
Q 042884          473 SYNKLNGK  480 (614)
Q Consensus       473 s~N~l~~~  480 (614)
                      ++|.|...
T Consensus       247 s~N~i~~~  254 (372)
T 3un9_A          247 YFNELSSE  254 (372)
T ss_dssp             TTSSCCHH
T ss_pred             cCCCCCHH
Confidence            66666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.15  E-value=4.4e-09  Score=107.18  Aligned_cols=151  Identities=15%  Similarity=0.134  Sum_probs=100.9

Q ss_pred             CCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCE
Q 042884          324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDF  403 (614)
Q Consensus       324 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  403 (614)
                      ...+..+.+.....  .+....+....+++.+.+..+ +......+|.++..|+.+.+..+ ++ .+....|.++.+|+.
T Consensus       193 ~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          193 AKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKT  267 (379)
T ss_dssp             TCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCE
T ss_pred             ccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcc
Confidence            34444444443322  222333333566776666544 33344566777777777777665 44 566666666666666


Q ss_pred             EEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcc
Q 042884          404 LALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH  483 (614)
Q Consensus       404 L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  483 (614)
                      +.+..                   .+......+|.++++|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...
T Consensus       268 i~l~~-------------------~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~  327 (379)
T 4h09_A          268 LNFYA-------------------KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVY  327 (379)
T ss_dssp             EEECC-------------------CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             ccccc-------------------cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence            65532                   233344567889999999999988888888889999999999999765 6656777


Q ss_pred             cccCCCCCCeEeccCC
Q 042884          484 QLVELKTLEVFSLAFN  499 (614)
Q Consensus       484 ~l~~l~~L~~L~l~~N  499 (614)
                      +|.++++|+.+.+..+
T Consensus       328 aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          328 AFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTCTTCCCCCCCTT
T ss_pred             HhhCCCCCCEEEECCc
Confidence            8999999998887654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=2.9e-09  Score=106.62  Aligned_cols=63  Identities=19%  Similarity=0.392  Sum_probs=34.4

Q ss_pred             CCcCCEEECcCCcCCCCCCcCC---CCCCCCCEEEccCCcCCCC----CcccccCCCCCCeEeccCCcCc
Q 042884          440 LTRIQTLNLSHNNLTGLIPSTF---SNLKHIESLDLSYNKLNGK----IPHQLVELKTLEVFSLAFNNLS  502 (614)
Q Consensus       440 l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~ls~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~  502 (614)
                      +++|++|+|++|.+....+..+   ..+++|++|+|+.|.+...    ++..+..+++|+.|++++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            5666666666666542211111   2356667777777666542    2223334566777777777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.54  E-value=2.5e-08  Score=99.89  Aligned_cols=191  Identities=15%  Similarity=0.156  Sum_probs=115.0

Q ss_pred             cccccCCCCCCCEEECCCcccCC-----CCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccC
Q 042884           10 LLQSMGSLPSLNTLYLKHNNFTG-----TATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVN   83 (614)
Q Consensus        10 l~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~   83 (614)
                      +.+++.++++|+.|.+.......     .....+. .+..+++|+.|++++|.-. ..+. + .+++|++|.+..+.+..
T Consensus       131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~  207 (362)
T 2ra8_A          131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD  207 (362)
T ss_dssp             HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred             HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh
Confidence            45566778899999887653321     1111133 4567789999999877311 2222 2 36788999888776543


Q ss_pred             CccCCCCCCCCCCCCEEeCcC--cccCCC---cchhhHhh-hcCCCcCEEeccCCcCCCCCCCcCchhh---cCCCCCCe
Q 042884           84 GVVRGQGFPHFKSLEHLNMER--ARIAPN---TSFLQIIG-ESTPSLKYLSLSDFTLSTNSSRILDRGL---CSLMHLQE  154 (614)
Q Consensus        84 ~~~~~~~~~~l~~L~~L~l~~--n~l~~~---~~~~~~l~-~~l~~L~~L~L~~n~l~~~~~~i~~~~~---~~l~~L~~  154 (614)
                      .....-....+++|++|+|+.  +...+.   ..+...+. ..+++|++|++.+|.+.+   .... .+   ..+++|++
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~---~~~~-~la~a~~~~~L~~  283 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN---VVVE-MFLESDILPQLET  283 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH---HHHH-HHHHCSSGGGCSE
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch---HHHH-HHHhCccCCCCCE
Confidence            222100123688999998853  221110   01112222 237899999999888763   2211 22   35789999


Q ss_pred             EECcCCcccccc----CccccCCCCCcEEEcccCCCCCccCCCCCCC-CCCCCEEEcccCc
Q 042884          155 LYKVNNDLRGSL----PWCVANMTSLRILDVSSNQLTGSIASSPLAH-LTSIEELHLSDNH  210 (614)
Q Consensus       155 L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~  210 (614)
                      |+|+.|.+++..    +..+..+++|+.|++++|.+++..-. .+.. +  ..+++++.+.
T Consensus       284 LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHHHHC--CSEEECCSBC
T ss_pred             EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HHHHHc--CCEEEecCCc
Confidence            999999988643    33345678999999999988732211 1221 1  3568888775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.47  E-value=1.2e-08  Score=92.11  Aligned_cols=92  Identities=16%  Similarity=0.114  Sum_probs=44.8

Q ss_pred             CCCCEEeCcCcccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEEC--cCCcccccc----
Q 042884           95 KSLEHLNMERARIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYK--VNNDLRGSL----  166 (614)
Q Consensus        95 ~~L~~L~l~~n~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L--~~n~i~~~~----  166 (614)
                      ++|++|+|++|.+..  ...+.+.+.. .++|++|+|++|.+.+.........+...+.|++|++  ++|.|+...    
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~-n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHh-CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            445555555555431  0112233333 4556666666665543221112224455556666666  556665432    


Q ss_pred             CccccCCCCCcEEEcccCCCC
Q 042884          167 PWCVANMTSLRILDVSSNQLT  187 (614)
Q Consensus       167 ~~~~~~l~~L~~L~L~~n~l~  187 (614)
                      ...+...++|++|+|++|.+.
T Consensus       144 ~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          144 ANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCcCEEeccCCCCC
Confidence            233444466666666666553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.41  E-value=9.8e-08  Score=86.09  Aligned_cols=120  Identities=20%  Similarity=0.125  Sum_probs=69.1

Q ss_pred             CCCCCCCCEEeCcCc-ccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc--
Q 042884           91 FPHFKSLEHLNMERA-RIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS--  165 (614)
Q Consensus        91 ~~~l~~L~~L~l~~n-~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~--  165 (614)
                      +...+.|++|++++| .+..  ...+...+.. .++|++|+|++|.+.+.........+...+.|++|+|++|.|++.  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            334556666666666 5542  1122333444 567777777777765422222223455556777777777777653  


Q ss_pred             --cCccccCCCCCcEEEc--ccCCCCCc----cCCCCCCCCCCCCEEEcccCcCc
Q 042884          166 --LPWCVANMTSLRILDV--SSNQLTGS----IASSPLAHLTSIEELHLSDNHFR  212 (614)
Q Consensus       166 --~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~  212 (614)
                        +..++...++|++|+|  ++|.+.+.    +. ..+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~-~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH-HHHHhCCCcCEEeccCCCCC
Confidence              2445566677777777  66776522    11 12444567777777777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=1.6e-07  Score=88.99  Aligned_cols=66  Identities=32%  Similarity=0.424  Sum_probs=32.6

Q ss_pred             CCCcCCEEECcCCcCCCC--CCcCCCCCCCCCEEEccCCcCCCCCcccccCCC--CCCeEeccCCcCcccCC
Q 042884          439 NLTRIQTLNLSHNNLTGL--IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK--TLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       439 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~--~L~~L~l~~N~l~~~~~  506 (614)
                      ++++|+.|+|++|+|+++  ++..+..+++|+.|+|++|+|++.  +.+..+.  .|++|+|++|++.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            345555555555555542  223344555555555555555533  1222222  56666666666554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=2.4e-07  Score=87.78  Aligned_cols=80  Identities=24%  Similarity=0.283  Sum_probs=63.7

Q ss_pred             cccCCccEEEcCCCcCCc--cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCC--CCCEEEccCCcCCCCCcc------
Q 042884          414 KVLSLLSGLDLSCNKLIG--HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK--HIESLDLSYNKLNGKIPH------  483 (614)
Q Consensus       414 ~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~ls~N~l~~~~~~------  483 (614)
                      ..++.|+.|+|++|++++  .++..+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|.+.+..|+      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            347899999999999997  3456778899999999999999876  3344444  999999999999875552      


Q ss_pred             -cccCCCCCCeEe
Q 042884          484 -QLVELKTLEVFS  495 (614)
Q Consensus       484 -~l~~l~~L~~L~  495 (614)
                       .+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             366788888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.07  E-value=5.9e-06  Score=69.23  Aligned_cols=59  Identities=24%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             CEEECcCCcCC-CCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884          444 QTLNLSHNNLT-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE  504 (614)
Q Consensus       444 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  504 (614)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            46778888876 23343332  3678888888888876667777788888888888877753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.92  E-value=2.7e-06  Score=74.58  Aligned_cols=94  Identities=13%  Similarity=0.103  Sum_probs=53.9

Q ss_pred             ccccccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCC-CCccchHHHhhc----cCCcEEeccCccccC
Q 042884            9 KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSS-LHISLLQSIASL----FPSLKNLSMSYCEVN   83 (614)
Q Consensus         9 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~l----~~l~~l~l~~~~~~~   83 (614)
                      .+|.....-..|++||++++.|+..+   +..+..+++|++|+|++|. ++..-...++.+    ++|++|++++|..++
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~G---L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIG---FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGG---GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHH---HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            34443323346888888888877654   5567788888888888884 665544555542    346666666654322


Q ss_pred             CccCCCCCCCCCCCCEEeCcCcc
Q 042884           84 GVVRGQGFPHFKSLEHLNMERAR  106 (614)
Q Consensus        84 ~~~~~~~~~~l~~L~~L~l~~n~  106 (614)
                      ..-. ..+.++++|++|+++++.
T Consensus       129 D~Gl-~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          129 DKGI-IALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHH-HHGGGCTTCCEEEEESCT
T ss_pred             HHHH-HHHhcCCCCCEEECCCCC
Confidence            1110 123445555555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.76  E-value=3.3e-06  Score=74.06  Aligned_cols=83  Identities=12%  Similarity=0.116  Sum_probs=55.8

Q ss_pred             CccEEEcCCCcCCccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCC----CCCCEEEccCCc-CCCCCcccccCCCCC
Q 042884          418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNL----KHIESLDLSYNK-LNGKIPHQLVELKTL  491 (614)
Q Consensus       418 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~ls~N~-l~~~~~~~l~~l~~L  491 (614)
                      .|+.||+++|.+++.--..+.++++|++|+|++|. +++.--..+..+    ++|++|++++|. |+..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            46777777777665544556778888888888884 553322334443    368888888874 664433456677888


Q ss_pred             CeEeccCCc
Q 042884          492 EVFSLAFNN  500 (614)
Q Consensus       492 ~~L~l~~N~  500 (614)
                      ++|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888888875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.22  E-value=0.00073  Score=56.33  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=41.0

Q ss_pred             EEEccCCcCC-CCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884          469 SLDLSYNKLN-GKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       469 ~L~ls~N~l~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+.+++.+++.+|||.|+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            6777777775 24454332  3577777777777766666667777777777777777777743

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.95  E-value=5.7e-05  Score=67.50  Aligned_cols=90  Identities=19%  Similarity=0.239  Sum_probs=41.8

Q ss_pred             CCCCEEeCcCcccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCC---ccccc----
Q 042884           95 KSLEHLNMERARIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNN---DLRGS----  165 (614)
Q Consensus        95 ~~L~~L~l~~n~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n---~i~~~----  165 (614)
                      ..|+.|+|++|.+..  ...+.+.+.. .+.|++|+|++|.|.+........++..-+.|++|+|+++   .+...    
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            445555555555431  1123333333 4556666666665553222222223444455666666543   22221    


Q ss_pred             cCccccCCCCCcEEEcccCC
Q 042884          166 LPWCVANMTSLRILDVSSNQ  185 (614)
Q Consensus       166 ~~~~~~~l~~L~~L~L~~n~  185 (614)
                      +.+++..-+.|+.|+++.|.
T Consensus       149 ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCCcCeEeccCCC
Confidence            22334444566666666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.85  E-value=0.00067  Score=60.56  Aligned_cols=118  Identities=15%  Similarity=0.149  Sum_probs=79.9

Q ss_pred             CCCCCCEEeCcCc-ccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccC--
Q 042884           93 HFKSLEHLNMERA-RIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLP--  167 (614)
Q Consensus        93 ~l~~L~~L~l~~n-~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~--  167 (614)
                      +-+.|++|+|+++ .+..  ...+.+.+.. .+.|+.|+|++|.+.+.........+..-+.|++|+|+.|.|.+...  
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            4467778888775 5541  1234455555 78999999999998754434444456667899999999999986433  


Q ss_pred             --ccccCCCCCcEEEcccCC---CCCc----cCCCCCCCCCCCCEEEcccCcCc
Q 042884          168 --WCVANMTSLRILDVSSNQ---LTGS----IASSPLAHLTSIEELHLSDNHFR  212 (614)
Q Consensus       168 --~~~~~l~~L~~L~L~~n~---l~~~----~~~~~~~~l~~L~~L~L~~n~~~  212 (614)
                        +++..-+.|++|+|++|.   +...    +. .++..-+.|++|+++.|.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia-~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH-HHHHhCCCcCeEeccCCCcc
Confidence              445556789999998763   3311    11 12455688999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	614
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 94.7 bits (234), Expect = 2e-21
 Identities = 68/359 (18%), Positives = 136/359 (37%), Gaps = 26/359 (7%)

Query: 149 LMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSD 208
           L  +  L      ++ S+   V  + +L  ++ S+NQLT      PL +LT + ++ +++
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNN 97

Query: 209 NHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATF 268
           N       L  L N + L +F+ +  +++     +              +S+  G  +  
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 269 PKFLYHQH-------DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPI 321
                +Q        +L  ++      N      +L   T L++L   N+ ++     P+
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PL 215

Query: 322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDL 381
                L +L ++ N  +    L     L NL   +++ N +    P     +  L  L L
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 382 SNNQLTGEIPEH-LAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNL 440
             NQ++   P   L              +      L  L+ L L  N +    P  + +L
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSL 328

Query: 441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN 499
           T++Q L  ++N ++    S+ +NL +I  L   +N+++   P  L  L  +    L   
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.2 bits (212), Expect = 9e-19
 Identities = 64/346 (18%), Positives = 113/346 (32%), Gaps = 28/346 (8%)

Query: 171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFD 230
            ++  +  L      +  SI    + +L ++ +++ S+N       + PL N ++L    
Sbjct: 41  TDLDQVTTLQADRLGIK-SI--DGVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDIL 94

Query: 231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG 290
             NN++      +         L    ++                      D+S      
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 291 EFPNWLLENNTKLKTLF--------LVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIP 342
                   N                L   S        +     L  L  +NN      P
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 343 LEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
                IL NL   +++ N L      +  ++  L  LDL+NNQ++   P     G   L 
Sbjct: 215 ---LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLT 266

Query: 403 FLALSNNSLEG--KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPST 460
            L L  N +     +  L +  +L  N+        I NL  +  L L  NN++ + P  
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-- 324

Query: 461 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
            S+L  ++ L  + NK++      L  L  +   S   N +S   P
Sbjct: 325 VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.7 bits (182), Expect = 6e-15
 Identities = 55/355 (15%), Positives = 120/355 (33%), Gaps = 33/355 (9%)

Query: 11  LQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFP 70
           +  +  L +L  +   +N  T         L N T L    ++ + +      +  +   
Sbjct: 59  IDGVEYLNNLTQINFSNNQLTD-----ITPLKNLTKLVDILMNNNQIADITPLANLTNLT 113

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFK----SLEHLNMERARIAPNTSFLQIIGESTPSLKY 126
            L   +    +++ +         +    ++  ++      +               L  
Sbjct: 114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 173

Query: 127 LSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQL 186
           L+  +    +++       L  L +L+ L   NN +    P     +T+L  L ++ NQL
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQL 231

Query: 187 TGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSL 246
                   LA LT++ +L L++N      +L PL   ++L       N+++         
Sbjct: 232 KD---IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNIS------ 279

Query: 247 TTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTL 306
             P   L  L       +       + +  +L Y+ L    ++   P   + + TKL+ L
Sbjct: 280 --PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL 334

Query: 307 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA 361
           F  N+ ++      + +   +  L   +N      PL     L  +    ++  A
Sbjct: 335 FFANNKVSDVS--SLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 8e-11
 Identities = 72/410 (17%), Positives = 132/410 (32%), Gaps = 76/410 (18%)

Query: 71  SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA-----PNTSFLQIIGESTPSLK 125
            +  L      +  +    G  +  +L  +N    ++       N + L  I  +   + 
Sbjct: 45  QVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 101

Query: 126 YLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQ 185
            ++      +     + +  +  +  L+ L  +N     S      +  S        + 
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 186 LTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYS 245
                   PLA+LT++E L +S N       L  L N   L    A NN+++        
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITPL--- 215

Query: 246 LTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKT 305
                                          +L+ + L+  ++        L + T L  
Sbjct: 216 ---------------------------GILTNLDELSLNGNQLKDIGT---LASLTNLTD 245

Query: 306 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGS 365
           L L N+ ++     P+    +L +L +  N      PL     L  L +  ++ N     
Sbjct: 246 LDLANNQISNL--APLSGLTKLTELKLGANQISNISPL---AGLTALTNLELNEN--QLE 298

Query: 366 IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLS 425
             S   N+  L  L L  N ++   P              +S+       L+ L  L  +
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISP--------------VSS-------LTKLQRLFFA 337

Query: 426 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
            NK+       + NLT I  L+  HN ++ L P   +NL  I  L L+  
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481
             L    +   +     +L ++ TL      +  +       L ++  ++ S N+L    
Sbjct: 27  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT 82

Query: 482 P-HQLVELKTL 491
           P   L +L  +
Sbjct: 83  PLKNLTKLVDI 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.7 bits (182), Expect = 3e-15
 Identities = 44/215 (20%), Positives = 75/215 (34%), Gaps = 10/215 (4%)

Query: 318 RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLK 377
           ++P         LD+ NN        +  + L NL +  +  N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 378 ILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSG-----LDLSCNKLIGH 432
            L LS NQL  E+PE +      L         +   V + L+      L  +  K  G 
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 492
                  + ++  + ++  N+T +      +L     L L  NK+       L  L  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLA 198

Query: 493 VFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC 527
              L+FN++S       A      E     N  + 
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 52/311 (16%), Positives = 97/311 (31%), Gaps = 62/311 (19%)

Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN 233
               +LD+ +N++T         +L ++  L L +N     IS        +L+      
Sbjct: 31  PDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 88

Query: 234 NELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFP 293
           N+L                                 K      +L   +   TK+     
Sbjct: 89  NQLKE----------------------------LPEKMPKTLQELRVHENEITKVRKSVF 120

Query: 294 NWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353
           N L  N   +  L       +G         K+L  + +++ N    IP     + P+L 
Sbjct: 121 NGL--NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP---QGLPPSLT 174

Query: 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG 413
             ++  N +     +S   +N L  L LS N ++            +L  L L+NN L  
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLV- 232

Query: 414 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF------SNLKHI 467
                              +P  + +   IQ + L +NN++ +  + F      +     
Sbjct: 233 ------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 274

Query: 468 ESLDLSYNKLN 478
             + L  N + 
Sbjct: 275 SGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.0 bits (131), Expect = 8e-09
 Identities = 47/259 (18%), Positives = 97/259 (37%), Gaps = 38/259 (14%)

Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 336
           D   +DL + K+     +   +N   L TL L+N+ ++           +L +L +S N 
Sbjct: 32  DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 337 FQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV 396
            +  +P ++   L  L    +  N +     S F  +N + +++L  N L     E+ A 
Sbjct: 91  LK-ELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 397 -GCVYLDFLALSNNSLE---GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 452
            G   L ++ +++ ++      +   L+ L L  NK+       +  L  +  L LS N+
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 453 LTGLI-----------------------PSTFSNLKHIESLDLSYNKLNG------KIPH 483
           ++ +                        P   ++ K+I+ + L  N ++         P 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 484 QLVELKTLEVFSLAFNNLS 502
              +  +    SL  N + 
Sbjct: 267 YNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 58/353 (16%), Positives = 101/353 (28%), Gaps = 80/353 (22%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
           P    L L +       + I D    +L +L  L  +NN +    P   A +  L  L +
Sbjct: 31  PDTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEIT 241
           S NQL       P     +++EL + +N                         ++   + 
Sbjct: 87  SKNQLK----ELPEKMPKTLQELRVHENEI----------------------TKVRKSVF 120

Query: 242 ESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNT 301
              +           L SSG                L Y+ ++ T +             
Sbjct: 121 NGLNQMIVVELGTNPLKSSGI-----ENGAFQGMKKLSYIRIADTNIT------------ 163

Query: 302 KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA 361
                            +P      L +L +  N         +   L NL    +S N+
Sbjct: 164 ----------------TIPQGLPPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNS 206

Query: 362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSG 421
           +      S  N   L+ L L+NN+L             Y+  + L NN++          
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNIS--------- 255

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT--GLIPSTFSNLKHIESLDL 472
              +        P           ++L  N +    + PSTF  +    ++ L
Sbjct: 256 ---AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 7e-08
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 420 SGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
               + C+ L +  +P  +        L+L +N +T +    F NLK++ +L L  NK++
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 479 GKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESS 519
              P     L  LE   L+ N L     +            
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKL 429
           L+++  S+  L  ++P+ L      LD   L NN +        K L  L  L L  NK+
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 489
               P     L +++ L LS N L  L       L+ +   +    K+   + + L ++ 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 490 TLEVFSLAFNNLSGEIPEW 508
            +E+ +    +   E   +
Sbjct: 128 VVELGTNPLKSSGIENGAF 146

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 36/257 (14%), Positives = 72/257 (28%), Gaps = 20/257 (7%)

Query: 18  PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSM 77
           P    L L++N  T        +  N  NL    L  + +      + A L   L+ L +
Sbjct: 31  PDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYL 86

Query: 78  SYCEVNGVVRGQGFP--------------HFKSLEHLNMERARIAPNTSFLQIIGESTPS 123
           S  ++  +                            LN                 E+   
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 124 LKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSS 183
                LS   ++  +   + +GL     L EL+   N +       +  + +L  L +S 
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 184 NQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITES 243
           N ++     S        E    ++   ++P  L        + + +   + + +     
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 244 YSLTTPNFQLQYLLLSS 260
               T       + L S
Sbjct: 265 PGYNTKKASYSGVSLFS 281

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.3 bits (173), Expect = 4e-14
 Identities = 69/295 (23%), Positives = 116/295 (39%), Gaps = 31/295 (10%)

Query: 245 SLTTPNFQLQYLLLSSGYGDGA-TFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKL 303
              T  +++  L LS          P  L +   L ++ +             +   T+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 304 KTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALD 363
             L++ + +++G     +   K L  LD S N   G +P  I  + PNL+      N + 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRIS 162

Query: 364 GSIPSSFGNI-NLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSG- 421
           G+IP S+G+   L   + +S N+LTG+IP   A   +    L+ +    +  VL      
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 422 --LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479
                     +     ++G    +  L+L +N + G +P   + LK + SL++S+N L  
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-- 280

Query: 480 KIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 534
                                  GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 281 ----------------------CGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.2 bits (157), Expect = 4e-12
 Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 6/259 (2%)

Query: 222 NHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYV 281
              R+   D     L        SL    + L +L +          P  +     L Y+
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 282 DLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHI 341
            ++HT ++G  P++L +  T +   F  N +L+G     I S   L  +    N   G I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 342 PLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYL 401
           P   G       S  IS N L G IP +F N+NL  +    N           +      
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 402 DFLA---LSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP 458
             LA   L+ +  +  +   L+GLDL  N++ G +P  +  L  + +LN+S NNL G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 459 STFSNLKHIESLDLSYNKL 477
               NL+  +    + NK 
Sbjct: 286 Q-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 159 NNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
           NN + G+LP  +  +  L  L+VS N L G I      +L   +    ++N  
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 168 WCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLK 227
             V    +L  LD+ +N++ G++    L  L  +  L++S N+    I      N  R  
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFD 294

Query: 228 IFDAENN 234
           +    NN
Sbjct: 295 VSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 44/273 (16%), Positives = 89/273 (32%), Gaps = 16/273 (5%)

Query: 72  LKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSD 131
           + NL +S   +             +L +LN     I    + +  I  +   L  L    
Sbjct: 52  VNNLDLSGLNLPK--PYPIPSSLANLPYLNFLY--IGGINNLVGPIPPAIAKLTQLH--Y 105

Query: 132 FTLSTNSSRILDRGLCSLMH-LQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI 190
             ++  +         S +  L  L    N L G+LP  ++++ +L  +    N+++G+I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 191 ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
             S  +       + +S N     I       +           +L+  + E  +     
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-------FVDLSRNMLEGDASVLFG 218

Query: 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310
                  +       A     +    +L  +DL + ++ G  P   L     L +L +  
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSF 277

Query: 311 DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPL 343
           ++L G       + +R      +NN      PL
Sbjct: 278 NNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 9/239 (3%)

Query: 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN 335
              + + L   +++             L  L+L ++ LA            L QLD+S+N
Sbjct: 32  AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 336 NFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLA 395
                +       L  L + ++    L    P  F  +  L+ L L +N L     +   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF- 149

Query: 396 VGCVYLDFLALSNNSLEGKVLSLLSGL------DLSCNKLIGHIPPQIGNLTRIQTLNLS 449
                L  L L  N +         GL       L  N++    P    +L R+ TL L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 450 HNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508
            NNL+ L     + L+ ++ L L+ N        + +    L+ F  + + +   +P+ 
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 47/219 (21%), Positives = 73/219 (33%), Gaps = 7/219 (3%)

Query: 319 LPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKI 378
           +P+      +++ +  N               NL    +  N L     ++F  + LL+ 
Sbjct: 26  VPVGIPAASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 379 LDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL------LSGLDLSCNKLIGH 432
           LDLS+N     +      G   L  L L    L+     L      L  L L  N L   
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 492
                 +L  +  L L  N ++ +    F  L  ++ L L  N++    PH   +L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 493 VFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531
              L  NNLS    E  A            N ++C    
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 48/311 (15%), Positives = 87/311 (27%), Gaps = 33/311 (10%)

Query: 169 CVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKI 228
           CV               L     + P+    + + + L  N     +          L I
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ----AVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTI 60

Query: 229 FDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKM 288
               +N L      +++      QL     S      +  P   +    L  + L    +
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDL---SDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 289 NGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI 348
               P         L+ L+L +++L             L  L +  N     +P      
Sbjct: 118 QELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRG 175

Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
           L +L    +  N +    P +F ++  L  L L  N L+  +P         L +L L++
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLND 234

Query: 409 NSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 468
           N                C+               +Q    S + +   +P   +      
Sbjct: 235 NPW-------------VCD------CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRD--- 272

Query: 469 SLDLSYNKLNG 479
              L+ N L G
Sbjct: 273 LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 44/292 (15%), Positives = 90/292 (30%), Gaps = 40/292 (13%)

Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
            + + + L         S +      +  +L  L+  +N L          +  L  LD+
Sbjct: 32  AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEIT 241
           S N    S+  +    L  +  LHL        +        + L+    ++N L A   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 242 ESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNT 301
           +++        L +L L            F    H L+ + L   ++    P+   +   
Sbjct: 147 DTF---RDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 302 KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA 361
            +      N+  A P    +   + L+ L +++N +                        
Sbjct: 203 LMTLYLFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCRAR----------------- 244

Query: 362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG 413
                         L+    S++++   +P+ LA      D   L+ N L+G
Sbjct: 245 ---------PLWAWLQKFRGSSSEVPCSLPQRLA----GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 32/193 (16%)

Query: 365 SIPSSFGNINLLKILDLSNNQLTGEIPE------HLAVGCVYLDFLALSNNSLEGKVLSL 418
           ++P         + + L  N+++           +L +  ++ + LA  + +    +  L
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH------------------------NNLT 454
                    +L    P     L R+ TL+L                          N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 455 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFAT 514
            L   TF +L ++  L L  N+++         L +L+   L  N ++   P        
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 515 FNESSYEGNTFLC 527
                   N    
Sbjct: 203 LMTLYLFANNLSA 215

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 7e-08
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 419 LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTG----LIPSTFSNLKHIESLDLS 473
           +  LD+ C +L      ++   L + Q + L    LT      I S       +  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 474 YNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508
            N+L     H +++        +   +L       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 5e-07
 Identities = 50/458 (10%), Positives = 111/458 (24%), Gaps = 24/458 (5%)

Query: 46  NLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGV---VRGQGFPHFKSLEHLNM 102
           +++   +    L  +    +  L    + + +  C +                +L  LN+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 103 ERARIAPNT--SFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNN 160
               +        LQ +   +  ++ LSL +  L+     +L   L +L  LQEL+    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH---- 118

Query: 161 DLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPL 220
                         +   L                    S+           +    +  
Sbjct: 119 ------LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 172

Query: 221 FNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEY 280
                    +     +  +  +         +L+   ++S                    
Sbjct: 173 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 232

Query: 281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH 340
           +  +     G         +   +   L         +      + LR  +         
Sbjct: 233 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 292

Query: 341 IPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVY 400
             L          +       L+     S            S       + E        
Sbjct: 293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 352

Query: 401 LDFLALSNNSLEGKVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSHNNLTG- 455
            D          G+  S+L  L L+   +       +   +     ++ L+LS+N L   
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 456 ----LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 489
               L+ S       +E L L     + ++  +L  L+
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 7e-06
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 439 NLTRIQTLNLSHNNLTGL----IPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-----LK 489
             + ++ L L+  +++      + +T      +  LDLS N L      QLVE       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 490 TLEVFSLAFNNLSGEIPEW 508
            LE   L     S E+ + 
Sbjct: 427 LLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 9e-06
 Identities = 52/440 (11%), Positives = 107/440 (24%), Gaps = 18/440 (4%)

Query: 8   SKLLQSMGSLPSLNTLYLKHNNFTGTATTT-TQELHNFTNLEYSTLSGSSLHISLLQSIA 66
           ++  + +  L     + L     T       +  L     L    L  + L    +  + 
Sbjct: 17  ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 76

Query: 67  SLF----PSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL---NMERARIAPNTSFLQIIGE 119
                    ++ LS+  C + G   G      ++L  L   ++    +      L   G 
Sbjct: 77  QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 136

Query: 120 STPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRIL 179
             P  +   L     S +++                    ++   +          L+  
Sbjct: 137 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 196

Query: 180 DVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAE 239
                 L          +   +  +  S    R             +          ++ 
Sbjct: 197 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 256

Query: 240 ITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLEN 299
           +   +             L        +  +     ++L              P   LE+
Sbjct: 257 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 316

Query: 300 NTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP--NLISFNI 357
                  F           L  +      Q+  +     G   L  G   P   L    +
Sbjct: 317 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 376

Query: 358 SMNALDG----SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVG----CVYLDFLALSNN 409
           +   +      S+ ++    + L+ LDLSNN L       L          L+ L L + 
Sbjct: 377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436

Query: 410 SLEGKVLSLLSGLDLSCNKL 429
               ++   L  L+     L
Sbjct: 437 YWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 38/411 (9%), Positives = 103/411 (25%), Gaps = 17/411 (4%)

Query: 1   NVKIRDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHIS 60
            +       +  ++   P+L  L L+ N           +     + +   LS  +  ++
Sbjct: 38  GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

Query: 61  LLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGES 120
                          ++    ++  + G           L+ +         +  +   S
Sbjct: 98  GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 157

Query: 121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILD 180
              L  +  +       +    D     +  L +  K +     +L      +TS    D
Sbjct: 158 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 217

Query: 181 VSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEI 240
           +     + +           + ++ +++    +      L      +             
Sbjct: 218 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG-DLC 276

Query: 241 TESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENN 300
               +  +              G        L     LE + +          +      
Sbjct: 277 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 336

Query: 301 TKLKTLFLV--------NDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDIL--- 349
            + + L  +        +  +    +        LR L +++ +        +   L   
Sbjct: 337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 396

Query: 350 PNLISFNISMNALDGSIPSSFG-----NINLLKILDLSNNQLTGEIPEHLA 395
            +L   ++S N L  +              LL+ L L +   + E+ + L 
Sbjct: 397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 61/347 (17%), Positives = 103/347 (29%), Gaps = 30/347 (8%)

Query: 147 CSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHL 206
           C      EL   N  L  SLP        L  L  S N LT  +   P     S++ L +
Sbjct: 35  CLDRQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELPELP----QSLKSLLV 85

Query: 207 SDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGA 266
            +N+ +    L PL  +  +     E        +    +   N  L+ L       +  
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 267 TFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKR 326
                   +          T +  +  +     +  L    +V  +        + +   
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQL 386
           L  +   NN  +                   S+ AL+           L + L   +   
Sbjct: 206 LTTIYADNNLLKTLPD------------LPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 253

Query: 387 TGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 446
                       +Y    + +       +   L  L++S NKLI  +P     L R   L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---L 309

Query: 447 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 493
             S N+L   +P    NLK    L + YN L  + P     ++ L +
Sbjct: 310 IASFNHLAE-VPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 8e-06
 Identities = 53/335 (15%), Positives = 90/335 (26%), Gaps = 30/335 (8%)

Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN 233
                L++++  L+ S+   P      +E L  S N       L  L     LK    +N
Sbjct: 38  RQAHELELNNLGLS-SLPELP----PHLESLVASCNSLT---ELPELP--QSLKSLLVDN 87

Query: 234 NELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFP 293
           N L A       L         L       + +         + L+ +      +     
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 294 NWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353
                             ++                L+           L     LP L 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG 413
           +     N    ++P    ++  L + D     L         +      F  LS      
Sbjct: 208 TIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN- 265

Query: 414 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 473
                        N     I         ++ LN+S+N L   +P+    L+    L  S
Sbjct: 266 ---------LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLER---LIAS 312

Query: 474 YNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508
           +N L  ++P     LK L    + +N L  E P+ 
Sbjct: 313 FNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 11/160 (6%)

Query: 268 FPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL 327
              FL   +    +  +   +        + +N       L            I S    
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLT 387
              ++   N   +    + D+ P+L   N+S N L   +P+       L+ L  S N L 
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA 317

Query: 388 GEIPEHLAVGCVYLDFLALSNNSLEG--KVLSLLSGLDLS 425
            E+PE        L  L +  N L     +   +  L ++
Sbjct: 318 -EVPELPQ----NLKQLHVEYNPLREFPDIPESVEDLRMN 352

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 7e-07
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 3/114 (2%)

Query: 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKL 477
            SGL  + +  +      +     +  L + +   L  L       L  + +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 478 NGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531
               P        L   +L+FN L   +     Q  +  E    GN   C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 9e-07
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 31/201 (15%)

Query: 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQL 386
             +++    N    +P ++     +    ++S N L     ++      L  L+L   +L
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 387 TGEIPEHL--------------------------AVGCVYLDFLALSNNSLEGKVLSLLS 420
           T    +                                        S      + L  L 
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 421 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 480
            L L  N+L    P  +    +++ L+L++NNLT L     + L+++++L L  N L   
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186

Query: 481 IPHQLVELKTLEVFSLAFNNL 501
           IP        L    L  N  
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 420 SGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476
           S L+++C  + +  +PP +        L+LS N L     +T      +  L+L   +
Sbjct: 11  SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 39/243 (16%), Positives = 68/243 (27%), Gaps = 40/243 (16%)

Query: 146 LCSLMHLQELYKVNNDLRG--SLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEE 203
           +C +  +    +VN D R   +LP  +       IL +S N L     ++ L   T + +
Sbjct: 3   ICEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLAT-LMPYTRLTQ 59

Query: 204 LHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYG 263
           L+L             L     L +   +   L                           
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP------------------- 100

Query: 264 DGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHS 323
                       + L  + L   +  GE     L+ N                    + +
Sbjct: 101 ---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK------------TLPPGLLT 145

Query: 324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSN 383
                +     NN    +P  + + L NL +  +  N+   +IP  F   +LL    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHG 204

Query: 384 NQL 386
           N  
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 436 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFS 495
           ++  +     +N    NLT L P    +      L LS N L       L+    L   +
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 496 L 496
           L
Sbjct: 62  L 62

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 27/238 (11%)

Query: 171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFD 230
             + +   +    + +T ++     A L  I  L           ++E +   + L   +
Sbjct: 16  PALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG 290
            ++N++               +L                K +     L+ +         
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSG-----------NPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 291 EFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP 350
                 L   + L+ L+L  + +     L   ++ +   +  +  +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----S 173

Query: 351 NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
            L +     N +    P    ++  L  + L NNQ++   P         L  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 36/224 (16%), Positives = 76/224 (33%), Gaps = 20/224 (8%)

Query: 16  SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNL 75
           +L +   +    +N T T T       +   +   +  G+   ++ ++ +  L  +L  L
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA-----DLDGITTLSAFGTG--VTTIEGVQYL-NNLIGL 68

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
            +   ++  +   +       LE        ++       I      S +   ++     
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 136 TNSSRI------LDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGS 189
           +N   +      +             Y    + + S    +AN++ L  L    N+++  
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 190 IASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN 233
               PLA L ++ E+HL +N       + PL N S L I    N
Sbjct: 189 S---PLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 473
           L+ L    NK+    P  + +L  +  ++L +N ++ + P   +N  ++  + L+
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 425 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 484
           S           + NL+++ TL    N ++ + P   ++L ++  + L  N+++   P  
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-- 212

Query: 485 LVELKTLEVFSL 496
           L     L + +L
Sbjct: 213 LANTSNLFIVTL 224

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF 494
            Q  N  R + L+L    +   I +  + L   +++D S N++          L+ L+  
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 495 SLAFNNLSGEIPEW 508
            +  N +       
Sbjct: 69  LVNNNRICRIGEGL 82

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 3/125 (2%)

Query: 406 LSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK 465
           L   + +         LDL   K I  I      L +   ++ S N +  L    F  L+
Sbjct: 7   LIEQAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLR 63

Query: 466 HIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTF 525
            +++L ++ N++          L  L    L  N+L                        
Sbjct: 64  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123

Query: 526 LCGLP 530
           +    
Sbjct: 124 VTNKK 128

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 368 SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLE----GKVLSLLSGLD 423
           + + N    + LDL   ++   + E+L       D +  S+N +       +L  L  L 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLL 69

Query: 424 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIP 482
           ++ N++          L  +  L L++N+L  L      ++LK +  L +  N +  K  
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 483 HQLVELKTL 491
           ++L  +  +
Sbjct: 130 YRLYVIYKV 138

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 9e-06
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 330 LDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE 389
           LD++  N    +   +  +   +I+F    + +D  +   F    + + +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFRV-QHMDLSNSVIEVS 61

Query: 390 IPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGL 422
               +   C  L  L+L    L   +++ L+  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 94

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 9e-06
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 22/122 (18%)

Query: 375 LLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP 434
           L + LDL+   L  ++   L               S                   +    
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLL--------------SQGVIAFRC-------PRSFMDQPL 39

Query: 435 PQIGNLTRIQTLNLSHNNLTG-LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 493
            +  +  R+Q ++LS++ +    +    S    +++L L   +L+  I + L +   L  
Sbjct: 40  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99

Query: 494 FS 495
            +
Sbjct: 100 LN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 30/261 (11%), Positives = 68/261 (26%), Gaps = 42/261 (16%)

Query: 281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH 340
           +DL+   ++ +    LL                         S  R++ +D+SN+  +  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS 61

Query: 341 IPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILD------------------LS 382
               I      L + ++    L   I ++    + L  L+                   S
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 383 NNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGL-------------------- 422
                                +A  + ++    LS                         
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 423 DLSCNKLIGHIPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481
                 L      +   L  +Q L+LS   ++          +  +++L +     +G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 482 PHQLVELKTLEVFSLAFNNLS 502
                 L  L++    F  ++
Sbjct: 242 QLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 37/219 (16%), Positives = 72/219 (32%), Gaps = 4/219 (1%)

Query: 13  SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
             G L S   +  +             E  +   +++  LS S + +S L  I S    L
Sbjct: 16  VTGRLLSQGVIAFRCPR--SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 73

Query: 73  KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF 132
           +NLS+    ++  +         +L  LN+         +   ++   +   +      F
Sbjct: 74  QNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132

Query: 133 TLSTNSSRILDRGLCSLMHLQELYK-VNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIA 191
             +    ++    +   +    L     N  +  L   V    +L  LD+S + +  +  
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192

Query: 192 SSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFD 230
                 L  ++ L LS  +  IP +L  L     LK   
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 36/301 (11%)

Query: 204 LHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYG 263
           L L+  +   P     L +   +  F    + ++  + E +S      ++Q++ LS+   
Sbjct: 5   LDLTGKNLH-PDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF----RVQHMDLSNSVI 58

Query: 264 DGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHS 323
           + +T    L     L+ + L   +++    N  L  N+ L  L L   S    F L    
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQ-TL 116

Query: 324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG--------SIPSSFGNINL 375
                +LD  N ++      +   +    +S  I+   L G         + +       
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPP 435
           L  LDLS++ +             YL  L+LS                  C  +I     
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR-----------------CYDIIPETLL 219

Query: 436 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFS 495
           ++G +  ++TL +      G +      L H   L ++ +         +   K  E++ 
Sbjct: 220 ELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIWG 276

Query: 496 L 496
           +
Sbjct: 277 I 277

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 43/331 (12%), Positives = 88/331 (26%), Gaps = 26/331 (7%)

Query: 175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF------RIPISLEPLFNHSRLKI 228
           SL++  +++         + L    S++E+ LS N         +  ++    +    + 
Sbjct: 9   SLKLDAITTEDEKSVF--AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 229 FDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKM 288
            D     +  EI E+  L          L +    D A  P       D          +
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 289 NGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH---IPLEI 345
                              +              +   LR +    N  +        + 
Sbjct: 127 YLHNNGL-----GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 346 GDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLA 405
                 L +  +  N +            L    +L    L      HL    + +   +
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 241

Query: 406 LSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG-----LIPST 460
             N    G    LLS        ++            +QTL L +N +       L    
Sbjct: 242 WPNLRELGLNDCLLS--ARGAAAVVDAFS--KLENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 461 FSNLKHIESLDLSYNKLNGKIPHQLVELKTL 491
              +  +  L+L+ N+   +    + E++ +
Sbjct: 298 DEKMPDLLFLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 34/312 (10%), Positives = 75/312 (24%), Gaps = 30/312 (9%)

Query: 165 SLPWCVANMTSLRILDVSSNQLTGSIA---SSPLAHLTSIEELHLSDNHFRIPISLEP-- 219
           S+   +    S++ + +S N +    A   S  +A    +E    SD          P  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 220 -------LFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFL 272
                  L    +L      +N       E              L     G G      +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 273 YHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDV 332
                   V+                N  +  ++     +      L      +      
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 333 SNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE 392
              +          ++    +  N   +    ++  +  +   L+ L L++  L+     
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 393 HLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI-----GNLTRIQTLN 447
            +      L+ + L               L L  N++       +       +  +  L 
Sbjct: 262 AVVDAFSKLENIGLQT-------------LRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 448 LSHNNLTGLIPS 459
           L+ N  +     
Sbjct: 309 LNGNRFSEEDDV 320

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 410 SLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG----LIPSTFSNLK 465
           S+EGK L L    D    +    +   +     ++ + LS N +       +    ++ K
Sbjct: 4   SIEGKSLKL----DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 59

Query: 466 HIESLDLSYNKLN 478
            +E  + S     
Sbjct: 60  DLEIAEFSDIFTG 72

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 2/111 (1%)

Query: 376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH--I 433
            + LDL   +   ++        +       +   +  + +  L  L+LS N+L     +
Sbjct: 24  QQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDM 83

Query: 434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 484
              +     ++ LNLS N L             +E L L  N L+     Q
Sbjct: 84  SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 27/212 (12%), Positives = 64/212 (30%), Gaps = 4/212 (1%)

Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN 233
            +   L     +L   I     +    +E++ +S N     I  +   N  +L     E 
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 234 NELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFP 293
                 I        PN Q   +  S+           ++    +      +  ++    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLI--SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 294 NWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353
           N  +  + +   L+L  + +        +  +     ++S+NN    +P ++       +
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL-NLSDNNNLEELPNDVFHGASGPV 204

Query: 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQ 385
             +IS   +         N+  L+     N +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 431 GHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476
             +P  +    +    L++S   +  L      NLK + +      K
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 420 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479
                  +K+   IP  +        L      L  +    FS    +E +++S N +  
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 480 KIPHQ 484
            I   
Sbjct: 68  VIEAD 72

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481
           L L+ N +              +     +NNL  L    F        LD+S  +++   
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 482 PHQLVELKTLEVFSLAFNNLS 502
            + L  LK L   S    NL 
Sbjct: 218 SYGLENLKKLRARST--YNLK 236

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS---------------------T 460
           L L+   L   +   +  L  +  L+LSHN L  L P+                      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 461 FSNLKHIESLDLSYNKLNG-KIPHQLVELKTLEVFSLAFNNLSGE 504
            +NL  ++ L L  N+L        LV    L + +L  N+L  E
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 13/192 (6%)

Query: 282 DLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHI 341
           +L    +        L +   +  +   N  +       I     + +L ++ N      
Sbjct: 30  NLKKKSVTDAVTQNELNS---IDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK 84

Query: 342 PLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYL 401
           PL       NL +        +     S              +    +I   + +  +  
Sbjct: 85  PLA------NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 402 DFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 461
            +L  +  +    +  L     LS           +  LT++Q L LS N+++ L     
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RAL 196

Query: 462 SNLKHIESLDLS 473
           + LK+++ L+L 
Sbjct: 197 AGLKNLDVLELF 208

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 7/189 (3%)

Query: 17  LPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLH-ISLLQSIASLFPSLKNL 75
           L       L   N T T + T  +L   T L+   L   S+  +  L ++  +  S   L
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 74

Query: 76  SMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLS 135
           +      N         +   +  +             L     +         +   L 
Sbjct: 75  TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 136 TNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPL 195
            +S+ I D    S +   +    +++    L   +AN+T+L  LD+SSN+++     S L
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD---ISVL 190

Query: 196 AHLTSIEEL 204
           A LT++E L
Sbjct: 191 AKLTNLESL 199

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 33/224 (14%), Positives = 61/224 (27%), Gaps = 40/224 (17%)

Query: 175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENN 234
               +D +   L       P        EL L+DN      S         L   + + N
Sbjct: 9   EGTTVDCTGRGLK----EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN 64

Query: 235 ELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPN 294
           +L                                    +                 E  N
Sbjct: 65  QLT-----------------------------GIEPNAFEGASHIQELQLGENKIKEISN 95

Query: 295 WLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS 354
            +     +LKTL L ++ ++            L  L++++N F  +  L        L  
Sbjct: 96  KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW--FAEWLRK 153

Query: 355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGC 398
            +++  A     PS   +   ++I DL +++         + GC
Sbjct: 154 KSLNGGAARCGAPSKVRD---VQIKDLPHSEFKCSSEN--SEGC 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	614
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.01
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.69
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.18
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.12

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.2e-29  Score=251.03  Aligned_cols=255  Identities=31%  Similarity=0.511  Sum_probs=195.5

Q ss_pred             CCcEEEccCCCCCC--CCChhHHhcCCCccEEEccC-CCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          277 DLEYVDLSHTKMNG--EFPNWLLENNTKLKTLFLVN-DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       277 ~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      +++.|+|+++.+.+  .+|.. +..+++|++|++++ |.+.+..|..+..+++|++|++++|++.+..+..+. .++.|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~-~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccccccccccccccccchhhhcccccccccccccc-chhhhc
Confidence            46667777776665  35555 56677777777764 666665666677777777777777777644444333 366777


Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccccc-----CCccEEEcCCCc
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVL-----SLLSGLDLSCNK  428 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~L~~L~L~~n~  428 (614)
                      .++++.|.+.+.+|..+..++.|+++++++|.+.+.+|..+......++.+++++|++++..+     .....++++++.
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~  208 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM  208 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            777777777666777777777777777777777766666654333334667777777665332     234568889999


Q ss_pred             CCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcc
Q 042884          429 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW  508 (614)
Q Consensus       429 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  508 (614)
                      ..+.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|+.|.++++|++|+|++|+++|.+|+ 
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-  286 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-  286 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-
Confidence            988999999999999999999999987655 688899999999999999999999999999999999999999999997 


Q ss_pred             ccccCCcCcccccCCcCCCCCCCCCCC
Q 042884          509 KAQFATFNESSYEGNTFLCGLPLPICR  535 (614)
Q Consensus       509 ~~~~~~l~~~~~~~n~~~c~~~~~~c~  535 (614)
                      +..+++++.+++.+|+.+|+.|++.|.
T Consensus       287 ~~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cccCCCCCHHHhCCCccccCCCCCCCC
Confidence            678899999999999999999998883

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=8.8e-28  Score=244.88  Aligned_cols=187  Identities=25%  Similarity=0.380  Sum_probs=119.0

Q ss_pred             HhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccC
Q 042884          297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLL  376 (614)
Q Consensus       297 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  376 (614)
                      +..+++++.+++++|.++++.+  +..+++|++|++++|.++ .++ .+ ..+++|+.|++++|.+++..+  +..+++|
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~~~~L  265 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-TL-ASLTNLTDLDLANNQISNLAP--LSGLTKL  265 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-GG-GGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc-hh-hcccccchhccccCccCCCCc--ccccccC
Confidence            4456666666666666665433  344556666666666665 333 22 236667777777776664432  5566677


Q ss_pred             cEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc----cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCc
Q 042884          377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN  452 (614)
Q Consensus       377 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  452 (614)
                      ++|++++|+++ .++.  +..+..++.++++.|.+++    ..+++++.|++++|++++..  .+..+++|++|++++|+
T Consensus       266 ~~L~l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         266 TELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             SEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSC
T ss_pred             CEeeccCcccC-CCCc--cccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCC
Confidence            77777777665 3332  2455666666666665543    23566677777777776543  26777788888888887


Q ss_pred             CCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCC
Q 042884          453 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN  499 (614)
Q Consensus       453 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N  499 (614)
                      ++++  ..+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       341 l~~l--~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCC--GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCC--hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            7753  357777888888888888876544  677778888888776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.1e-26  Score=236.56  Aligned_cols=339  Identities=25%  Similarity=0.310  Sum_probs=239.2

Q ss_pred             CCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCcccc
Q 042884           92 PHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVA  171 (614)
Q Consensus        92 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  171 (614)
                      ..+.+|++|+++++.++   .+ +++.. +++|++|++++|.++    .+++  ++++++|++|++++|++.+..  .+.
T Consensus        41 ~~l~~l~~L~l~~~~I~---~l-~gl~~-L~nL~~L~Ls~N~l~----~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~  107 (384)
T d2omza2          41 TDLDQVTTLQADRLGIK---SI-DGVEY-LNNLTQINFSNNQLT----DITP--LKNLTKLVDILMNNNQIADIT--PLA  107 (384)
T ss_dssp             HHHTTCCEEECCSSCCC---CC-TTGGG-CTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCG--GGT
T ss_pred             HHhCCCCEEECCCCCCC---Cc-ccccc-CCCCCEEeCcCCcCC----CCcc--ccCCccccccccccccccccc--ccc
Confidence            34567888888888776   33 44555 788888888888877    4443  778888888888888887543  377


Q ss_pred             CCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCc
Q 042884          172 NMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNF  251 (614)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  251 (614)
                      ++++|+.|+++++.+.+ ++.  ......+.......|.+.. .........................     .   ...
T Consensus       108 ~l~~L~~L~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~  175 (384)
T d2omza2         108 NLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPL-----A---NLT  175 (384)
T ss_dssp             TCTTCCEEECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGG-----T---TCT
T ss_pred             ccccccccccccccccc-ccc--ccccccccccccccccccc-cccccccccccccccccccchhhhh-----c---ccc
Confidence            78888888888887773 332  3445666677766665542 1111111111122221111111110     0   000


Q ss_pred             cceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEE
Q 042884          252 QLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLD  331 (614)
Q Consensus       252 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  331 (614)
                      ....... ..  ...........+++++.+++++|.+.+..|   +...++|++|++++|.++.+  ..+..+++|+.|+
T Consensus       176 ~~~~~~~-~~--~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  247 (384)
T d2omza2         176 TLERLDI-SS--NKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD  247 (384)
T ss_dssp             TCCEEEC-CS--SCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             ccccccc-cc--cccccccccccccccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCc--chhhcccccchhc
Confidence            1111111 11  112334556778999999999999985544   46788999999999998874  3577889999999


Q ss_pred             ccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcc
Q 042884          332 VSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL  411 (614)
Q Consensus       332 l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  411 (614)
                      +++|.++ .++.  +..+++|++|++++|++++..  .+..++.++.+.+++|.+. .++.  +..+++++.|++++|++
T Consensus       248 l~~n~l~-~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~-~~~~--~~~~~~l~~L~ls~n~l  319 (384)
T d2omza2         248 LANNQIS-NLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLE-DISP--ISNLKNLTYLTLYFNNI  319 (384)
T ss_dssp             CCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCS-CCGG--GGGCTTCSEEECCSSCC
T ss_pred             cccCccC-CCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccc-cccc--cchhcccCeEECCCCCC
Confidence            9999998 4443  334889999999999998653  3778899999999999987 4433  46889999999999999


Q ss_pred             cc----cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCC
Q 042884          412 EG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN  475 (614)
Q Consensus       412 ~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N  475 (614)
                      ++    ..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|++|++++|
T Consensus       320 ~~l~~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         320 SDISPVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCGGGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCcccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            87    357899999999999985 33 68999999999999999998755  899999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.3e-25  Score=219.02  Aligned_cols=250  Identities=18%  Similarity=0.269  Sum_probs=149.7

Q ss_pred             CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCC
Q 042884           96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTS  175 (614)
Q Consensus        96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  175 (614)
                      ..+.++-++..++   .+|..+   .+++++|++++|.++    .+++.+|.++++|++|++++|.+....|.+|.++++
T Consensus        11 ~~~~~~C~~~~L~---~lP~~l---~~~l~~L~Ls~N~i~----~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~   80 (305)
T d1xkua_          11 HLRVVQCSDLGLE---KVPKDL---PPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK   80 (305)
T ss_dssp             ETTEEECTTSCCC---SCCCSC---CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             cCCEEEecCCCCC---ccCCCC---CCCCCEEECcCCcCC----CcChhHhhccccccccccccccccccchhhhhCCCc
Confidence            4566677776666   666654   357788888888877    676666788888888888888888777777888888


Q ss_pred             CcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884          176 LRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY  255 (614)
Q Consensus       176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  255 (614)
                      |++|++++|+++ .+|..   ....++.|++.+|.+. .++...+.....++.++...+.....                
T Consensus        81 L~~L~l~~n~l~-~l~~~---~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~----------------  139 (305)
T d1xkua_          81 LERLYLSKNQLK-ELPEK---MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSS----------------  139 (305)
T ss_dssp             CCEEECCSSCCS-BCCSS---CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGG----------------
T ss_pred             cCEecccCCccC-cCccc---hhhhhhhhhccccchh-hhhhhhhhcccccccccccccccccc----------------
Confidence            888888888887 67653   3356777787777776 33434455555566666555433211                


Q ss_pred             eeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCC
Q 042884          256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN  335 (614)
Q Consensus       256 L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  335 (614)
                                ...+..+..+++|+.+++++|.+. .+|..   ..++|++|++++|......+..|..++.++.|++++|
T Consensus       140 ----------~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n  205 (305)
T d1xkua_         140 ----------GIENGAFQGMKKLSYIRIADTNIT-TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  205 (305)
T ss_dssp             ----------GBCTTGGGGCTTCCEEECCSSCCC-SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             ----------CCCccccccccccCccccccCCcc-ccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccc
Confidence                      111233445566666666666665 44432   2455556666655555555555555555555555555


Q ss_pred             ccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCch
Q 042884          336 NFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEH  393 (614)
Q Consensus       336 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  393 (614)
                      .+. .++...+..+++|++|+|++|+++ .+|.+|..+++|++|++++|+|+ .++..
T Consensus       206 ~l~-~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~  260 (305)
T d1xkua_         206 SIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSN  260 (305)
T ss_dssp             CCC-EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTT
T ss_pred             ccc-ccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChh
Confidence            555 333333333555555555555554 23444555555555555555554 44433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.1e-24  Score=214.21  Aligned_cols=106  Identities=17%  Similarity=0.263  Sum_probs=58.1

Q ss_pred             CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCC--CCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884          277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAG--PFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS  354 (614)
Q Consensus       277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~  354 (614)
                      .++.|++++|.+. .++...+.....+..+....|....  .....+..+++|+.+++++|.+. .+|...   +++|+.
T Consensus       101 ~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~---~~~L~~  175 (305)
T d1xkua_         101 TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTE  175 (305)
T ss_dssp             TCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSE
T ss_pred             hhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc---CCccCE
Confidence            4455555555555 3444445555555566655553322  12233455556666666666665 444332   455666


Q ss_pred             EEccCCcCCCCCccchhccccCcEEEccCCccC
Q 042884          355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLT  387 (614)
Q Consensus       355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  387 (614)
                      |++++|...+..+..|.+++.++.|++++|.+.
T Consensus       176 L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCCCChhHhhcccccccccccccccc
Confidence            666666666555556666666666666666555

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=1.3e-26  Score=228.96  Aligned_cols=230  Identities=29%  Similarity=0.482  Sum_probs=199.4

Q ss_pred             CCCccccCCCCCcEEEccC-CCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhh
Q 042884          267 TFPKFLYHQHDLEYVDLSH-TKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEI  345 (614)
Q Consensus       267 ~~p~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  345 (614)
                      .+|..++.+++|++|++++ |.+.|.+|.. ++.+++|++|++++|++.+..+..+..+..|+.+++++|.+.+.+|..+
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l  145 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             CCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccccccccchhhhcccccccccccccCchhh
Confidence            4678888999999999986 7888889987 7889999999999999998888888889999999999999988888877


Q ss_pred             hhcCCCccEEEccCCcCCCCCccchhccccC-cEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCC
Q 042884          346 GDILPNLISFNISMNALDGSIPSSFGNINLL-KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSL  418 (614)
Q Consensus       346 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~  418 (614)
                      .. ++.++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+ ..+. ...++++++...+.      ..++
T Consensus       146 ~~-l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~-~~l~-~~~l~l~~~~~~~~~~~~~~~~~~  222 (313)
T d1ogqa_         146 SS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             GG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred             cc-Ccccceeeccccccccccccccccccccccccccccccccccccccc-cccc-cccccccccccccccccccccccc
Confidence            66 8999999999999998889888888776 889999999987666654 4444 44788888887653      3578


Q ss_pred             ccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccC
Q 042884          419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAF  498 (614)
Q Consensus       419 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~  498 (614)
                      ++.+++++|.+.+.++ .+..+++|+.|+|++|++++.+|..|+++++|++|+|++|+++|.+|+ +..+++|+.+++++
T Consensus       223 l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN  300 (313)
T ss_dssp             CSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCS
T ss_pred             cccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCC
Confidence            9999999999987655 588899999999999999999999999999999999999999998885 57889999999999


Q ss_pred             CcCc
Q 042884          499 NNLS  502 (614)
Q Consensus       499 N~l~  502 (614)
                      |+..
T Consensus       301 N~~l  304 (313)
T d1ogqa_         301 NKCL  304 (313)
T ss_dssp             SSEE
T ss_pred             Cccc
Confidence            9854

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.2e-26  Score=220.10  Aligned_cols=226  Identities=21%  Similarity=0.247  Sum_probs=116.5

Q ss_pred             EEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc-C
Q 042884          281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS-M  359 (614)
Q Consensus       281 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~-~  359 (614)
                      ++.+++.++ .+|..+   .+.+++|+|++|+++++.+.+|.++++|+.|++++|.+. .++...+..++.++.+... .
T Consensus        16 v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccc
Confidence            344444444 445432   234566666666666555555666666666666666665 3444444445555555543 3


Q ss_pred             CcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccC
Q 042884          360 NALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN  439 (614)
Q Consensus       360 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~  439 (614)
                      +.++...+..|.++++|++|++++|.+. .++...+....+|+.                  +++++|+++++.+.+|..
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~------------------l~l~~N~l~~i~~~~f~~  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQY------------------LYLQDNALQALPDDTFRD  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE------------------EECCSSCCCCCCTTTTTT
T ss_pred             cccccccchhhcccccCCEEecCCcccc-cccccccchhcccch------------------hhhccccccccChhHhcc
Confidence            4455455555666666666666666654 444433333333333                  333333333333444555


Q ss_pred             CCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCccc
Q 042884          440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESS  519 (614)
Q Consensus       440 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~  519 (614)
                      +++|++|++++|+++++.+..|.++++|+.+++++|+++++.|..|..+++|++|++++|++.+..+..+..+.+++.++
T Consensus       152 ~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~  231 (284)
T d1ozna_         152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEE
Confidence            55555555555555555555555555555555555555555555555555555555555555544444444455555555


Q ss_pred             ccCCcCCCCCC
Q 042884          520 YEGNTFLCGLP  530 (614)
Q Consensus       520 ~~~n~~~c~~~  530 (614)
                      +++|||.|+|+
T Consensus       232 l~~N~l~C~C~  242 (284)
T d1ozna_         232 LNDNPWVCDCR  242 (284)
T ss_dssp             CCSSCEECSGG
T ss_pred             ecCCCCCCCcc
Confidence            55555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.4e-25  Score=210.07  Aligned_cols=204  Identities=25%  Similarity=0.260  Sum_probs=134.7

Q ss_pred             CCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEE
Q 042884          301 TKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILD  380 (614)
Q Consensus       301 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  380 (614)
                      ..+.+++.+++.++.+++ .+  .+++++|+|++|.|+ .+|...+..+++|++|+|++|+++.. + .++.+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~~iP~-~l--p~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPP-DL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCSSCCS-CC--CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCCeeCc-Cc--CcCCCEEECcCCcCC-CcCHHHhhcccccccccccccccccc-c-cccccccccccc
Confidence            344445555555554322 11  134555555555554 44444444455555555555555422 1 234455555555


Q ss_pred             ccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcC
Q 042884          381 LSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPST  460 (614)
Q Consensus       381 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  460 (614)
                      +++|+++ ..+.. +.                  .+++|+.|++++|.+.+..+..+..+.++++|++++|.++.+.+..
T Consensus        84 Ls~N~l~-~~~~~-~~------------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~  143 (266)
T d1p9ag_          84 LSHNQLQ-SLPLL-GQ------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL  143 (266)
T ss_dssp             CCSSCCS-SCCCC-TT------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccccccc-ccccc-cc------------------cccccccccccccccceeeccccccccccccccccccccceecccc
Confidence            5555554 22222 22                  2456667777777777677777788888888888888888888888


Q ss_pred             CCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884          461 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       461 ~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      +..+++|+.+++++|++++..++.|..+++|++|+|++|+|+ .+|..+..+..++.++++||||.|+|..
T Consensus       144 ~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            888888888888888888777778888888888888888888 5666666778888888888888888854

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-24  Score=210.02  Aligned_cols=231  Identities=19%  Similarity=0.227  Sum_probs=192.0

Q ss_pred             CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccC-CccccCCChhhhhcCCCccE
Q 042884          276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSN-NNFQGHIPLEIGDILPNLIS  354 (614)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~  354 (614)
                      +++++|+|++|+++ .+|...|.++++|++|++++|.+..+....+.....++.++... +.++ .++...+..+++|++
T Consensus        32 ~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccc-cccchhhcccccCCE
Confidence            57899999999998 67766689999999999999999999999999999999998764 5565 777666777999999


Q ss_pred             EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCC
Q 042884          355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP  434 (614)
Q Consensus       355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~  434 (614)
                      |++++|.+....+..+...++|+.+++++|+++ .+|...|..+++|                  +.|++++|++++..+
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L------------------~~L~l~~N~l~~l~~  170 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNL------------------THLFLHGNRISSVPE  170 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC------------------CEEECCSSCCCEECT
T ss_pred             EecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccch------------------hhcccccCcccccch
Confidence            999999998888888999999999999999998 7777776555544                  455556666666778


Q ss_pred             ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCC
Q 042884          435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFAT  514 (614)
Q Consensus       435 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  514 (614)
                      .+|.++++|+.+++++|+++++.|..|..+++|++|++++|.+.+..|..|..+++|++|++++|++.|.++. ..-...
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~  249 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAW  249 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHH
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHH
Confidence            8999999999999999999999999999999999999999999998889999999999999999999976553 111222


Q ss_pred             cCcccccCCcCCCC
Q 042884          515 FNESSYEGNTFLCG  528 (614)
Q Consensus       515 l~~~~~~~n~~~c~  528 (614)
                      ++......+...|.
T Consensus       250 l~~~~~~~~~~~C~  263 (284)
T d1ozna_         250 LQKFRGSSSEVPCS  263 (284)
T ss_dssp             HHHCCSEECCCBEE
T ss_pred             HHhCcCCCCceEeC
Confidence            33444444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.6e-23  Score=196.66  Aligned_cols=204  Identities=24%  Similarity=0.272  Sum_probs=170.1

Q ss_pred             CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884          274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI  353 (614)
Q Consensus       274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  353 (614)
                      ....+.+++.+++.++ .+|..+   .+++++|+|++|.++++.+..|..+++|++|++++|.++ .++..  ..+++|+
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~   80 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLG   80 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCC
T ss_pred             ccCCCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--ccccccc
Confidence            4556777899998888 677652   257899999999999888888999999999999999997 56542  3489999


Q ss_pred             EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccC
Q 042884          354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHI  433 (614)
Q Consensus       354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~  433 (614)
                      +|++++|+++. .+..+..+++|++|++++|.+. .++...+..+.                  ++++|++++|.++...
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~------------------~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG------------------ELQELYLKGNELKTLP  140 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCT------------------TCCEEECTTSCCCCCC
T ss_pred             ccccccccccc-cccccccccccccccccccccc-eeecccccccc------------------ccccccccccccceec
Confidence            99999999984 4667889999999999999987 66665554444                  4555566666666677


Q ss_pred             CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884          434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI  505 (614)
Q Consensus       434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  505 (614)
                      +..+..+++|+.+++++|++++..++.|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|++.|.+
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            788889999999999999999999999999999999999999999 78888888999999999999998754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=8.8e-19  Score=175.16  Aligned_cols=77  Identities=29%  Similarity=0.421  Sum_probs=48.4

Q ss_pred             CccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEecc
Q 042884          418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA  497 (614)
Q Consensus       418 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~  497 (614)
                      .....++..+.+.+.    ...+++|++|+|++|+++.+ |.   .+++|+.|++++|+|+ .+|+.   +++|++|+++
T Consensus       265 ~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~  332 (353)
T d1jl5a_         265 NLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVE  332 (353)
T ss_dssp             TCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred             hhcccccccCccccc----cccCCCCCEEECCCCccCcc-cc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECc
Confidence            344455555555422    23456778888888877743 33   2567778888888877 45543   3567888888


Q ss_pred             CCcCcccCCc
Q 042884          498 FNNLSGEIPE  507 (614)
Q Consensus       498 ~N~l~~~~~~  507 (614)
                      +|+++ .+|.
T Consensus       333 ~N~L~-~lp~  341 (353)
T d1jl5a_         333 YNPLR-EFPD  341 (353)
T ss_dssp             SSCCS-SCCC
T ss_pred             CCcCC-CCCc
Confidence            88877 4454

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=1.3e-18  Score=173.87  Aligned_cols=312  Identities=25%  Similarity=0.323  Sum_probs=179.4

Q ss_pred             CcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCC
Q 042884          123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIE  202 (614)
Q Consensus       123 ~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  202 (614)
                      ++++|+|+++.++    .+|+    ..++|++|++++|+|+ .+|+.   ..+|+.|++++|+++ .++.  +  .+.|+
T Consensus        39 ~l~~LdLs~~~L~----~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~--l--p~~L~  101 (353)
T d1jl5a_          39 QAHELELNNLGLS----SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD--L--PPLLE  101 (353)
T ss_dssp             TCSEEECTTSCCS----CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS--C--CTTCC
T ss_pred             CCCEEEeCCCCCC----CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh--h--ccccc
Confidence            4455555555554    3333    1344555555555554 33432   234555555555554 3332  1  12355


Q ss_pred             EEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEE
Q 042884          203 ELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVD  282 (614)
Q Consensus       203 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~  282 (614)
                      +|++++|.+. .++  .+..+++|+.++++++.+......       ...+..+.+ ....  ...+..+..++.++.++
T Consensus       102 ~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~~~~~~~~~~-------~~~l~~l~~-~~~~--~~~~~~l~~l~~l~~L~  168 (353)
T d1jl5a_         102 YLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLKKLPDL-------PPSLEFIAA-GNNQ--LEELPELQNLPFLTAIY  168 (353)
T ss_dssp             EEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSCCCCC-------CTTCCEEEC-CSSC--CSSCCCCTTCTTCCEEE
T ss_pred             cccccccccc-ccc--chhhhccceeeccccccccccccc-------cccccchhh-cccc--ccccccccccccceecc
Confidence            5555555544 222  234455555555555544322110       012233332 1111  11223455678888999


Q ss_pred             ccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcC
Q 042884          283 LSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNAL  362 (614)
Q Consensus       283 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l  362 (614)
                      +++|... ..+.    .....+.+...++.+...  ..+..++.++.+++++|... .++.    ...++..+.+..+.+
T Consensus       169 l~~n~~~-~~~~----~~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~  236 (353)
T d1jl5a_         169 ADNNSLK-KLPD----LPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYL  236 (353)
T ss_dssp             CCSSCCS-SCCC----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCC
T ss_pred             ccccccc-cccc----cccccccccccccccccc--cccccccccccccccccccc-cccc----ccccccccccccccc
Confidence            9988876 3332    223456667766665543  23567889999999998876 4443    256788888888887


Q ss_pred             CCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc--cccCCccEEEcCCCcCCccCCccccCC
Q 042884          363 DGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG--KVLSLLSGLDLSCNKLIGHIPPQIGNL  440 (614)
Q Consensus       363 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l  440 (614)
                      ... +.   ....+...++..+.+. .++.    -.......++..+.+.+  ..+++|++|++++|+++ .+|.   .+
T Consensus       237 ~~~-~~---~~~~l~~~~~~~~~~~-~l~~----l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~  303 (353)
T d1jl5a_         237 TDL-PE---LPQSLTFLDVSENIFS-GLSE----LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LP  303 (353)
T ss_dssp             SCC-CC---CCTTCCEEECCSSCCS-EESC----CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CC
T ss_pred             ccc-cc---cccccccccccccccc-cccc----ccchhcccccccCccccccccCCCCCEEECCCCccC-cccc---cc
Confidence            633 22   2456677777776654 2221    12334566777776654  34688999999999998 4454   35


Q ss_pred             CcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEecc
Q 042884          441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA  497 (614)
Q Consensus       441 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~  497 (614)
                      ++|+.|+|++|+|+.+ |..   +++|++|++++|+++ .+|+..   .+|+.|.+.
T Consensus       304 ~~L~~L~L~~N~L~~l-~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         304 PRLERLIASFNHLAEV-PEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             TTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEECC
T ss_pred             CCCCEEECCCCcCCcc-ccc---cCCCCEEECcCCcCC-CCCccc---cccCeeECc
Confidence            7899999999999854 432   468999999999988 566543   356666653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.4e-19  Score=169.19  Aligned_cols=213  Identities=20%  Similarity=0.130  Sum_probs=125.2

Q ss_pred             cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884          279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS  358 (614)
Q Consensus       279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~  358 (614)
                      +.++.++..++ .+|..++   +++++|++++|.++.+.+.+|.++++|++|++++|.+.+.++...+..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56667776666 6665432   4677888888888777777777788888888888877655666666667777777765


Q ss_pred             C-CcCCCCCccchhccccCcEEEccCCccCCcCCc-hhhccCCCCCEEEccCCccccc-------ccCCccEEEcCCCcC
Q 042884          359 M-NALDGSIPSSFGNINLLKILDLSNNQLTGEIPE-HLAVGCVYLDFLALSNNSLEGK-------VLSLLSGLDLSCNKL  429 (614)
Q Consensus       359 ~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~-------~~~~L~~L~L~~n~l  429 (614)
                      . |.+....+..|.++++|+++++++|.+. ..+. .....+..+..+...++.+...       ....++.|++++|++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            4 5666666777778888888888888776 3332 2223333343334444433321       123445555555555


Q ss_pred             CccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEec
Q 042884          430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSL  496 (614)
Q Consensus       430 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l  496 (614)
                      +...+..|....-++.+++++|+++.+.++.|.++++|++|++++|+++.+.+..|.+++.|+.+++
T Consensus       166 ~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            5444433332222223344555555554555556666666666666665444444555555554444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.8e-21  Score=199.16  Aligned_cols=380  Identities=21%  Similarity=0.196  Sum_probs=196.1

Q ss_pred             CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc----Ccccc
Q 042884           96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL----PWCVA  171 (614)
Q Consensus        96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~  171 (614)
                      +|+.||++++.++. ..+.+.+.. ++++++|+|++|.++..........+..+++|++|+|++|+|++..    ...+.
T Consensus         3 ~l~~ld~~~~~i~~-~~~~~l~~~-l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSD-ARWAELLPL-LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCH-HHHHHHHHH-HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCCh-HHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            57788888888764 122333444 7888888888887764222222235677888888888888876422    22222


Q ss_pred             -CCCCCcEEEcccCCCCCc----cCCCCCCCCCCCCEEEcccCcCccccCcccc-----cCCCCccEEEccCCccccccc
Q 042884          172 -NMTSLRILDVSSNQLTGS----IASSPLAHLTSIEELHLSDNHFRIPISLEPL-----FNHSRLKIFDAENNELNAEIT  241 (614)
Q Consensus       172 -~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~  241 (614)
                       ...+|++|++++|++++.    ++ .++..+++|++|++++|.+... ....+     ...............+.....
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~-~~l~~~~~L~~L~L~~N~i~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDA-GLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             cCCCCCCEEECCCCCcccccccccc-chhhccccccccccccccchhh-hhhhhhhcccccccccccccccccccchhhh
Confidence             234688888888877632    12 2356677888888888876521 10111     111112222222221111000


Q ss_pred             ccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC----CChhHHhcCCCccEEEccCCCCCCCC
Q 042884          242 ESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGE----FPNWLLENNTKLKTLFLVNDSLAGPF  317 (614)
Q Consensus       242 ~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~  317 (614)
                      .                        .....+.....++.++++++.....    ....+.........+.+..+.+....
T Consensus       159 ~------------------------~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~  214 (460)
T d1z7xw1         159 E------------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN  214 (460)
T ss_dssp             H------------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred             c------------------------ccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            0                        0001122345566666666554321    11111122234455666555443211


Q ss_pred             C----CCCCCCCccCEEEccCCccccC----CChhhhhcCCCccEEEccCCcCCCC----CccchhccccCcEEEccCCc
Q 042884          318 R----LPIHSHKRLRQLDVSNNNFQGH----IPLEIGDILPNLISFNISMNALDGS----IPSSFGNINLLKILDLSNNQ  385 (614)
Q Consensus       318 ~----~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~  385 (614)
                      .    ..+...+.++.+++++|.+...    ...........++.+++++|.+...    ....+...+.++.+++++|.
T Consensus       215 ~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~  294 (460)
T d1z7xw1         215 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  294 (460)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             hhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1    1122345666777766655321    1112222245677777777766532    22234456667777777776


Q ss_pred             cCCcCCc----hhhccCCCCCEEEccCCccccc----------ccCCccEEEcCCCcCCcc----CCcccc-CCCcCCEE
Q 042884          386 LTGEIPE----HLAVGCVYLDFLALSNNSLEGK----------VLSLLSGLDLSCNKLIGH----IPPQIG-NLTRIQTL  446 (614)
Q Consensus       386 l~~~~~~----~~~~~~~~L~~L~l~~n~l~~~----------~~~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L  446 (614)
                      +.+....    .+......|+.+++++|.++..          ..++|++|+|++|++++.    ++..+. ..+.|++|
T Consensus       295 i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L  374 (460)
T d1z7xw1         295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL  374 (460)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             ccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEE
Confidence            6532211    1222344566777777666542          134577777777776532    222222 34567777


Q ss_pred             ECcCCcCCCC----CCcCCCCCCCCCEEEccCCcCCCCCccc----cc-CCCCCCeEeccCCcCcc
Q 042884          447 NLSHNNLTGL----IPSTFSNLKHIESLDLSYNKLNGKIPHQ----LV-ELKTLEVFSLAFNNLSG  503 (614)
Q Consensus       447 ~L~~n~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~~~~----l~-~l~~L~~L~l~~N~l~~  503 (614)
                      +|++|+++..    +...+...++|++|++++|+|+......    +. ....|+.|++.+|.+..
T Consensus       375 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         375 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             ECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            7777777632    2233455677777777777776422222    22 22357777777777664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=5.3e-19  Score=160.01  Aligned_cols=177  Identities=24%  Similarity=0.279  Sum_probs=126.9

Q ss_pred             cCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCC-CCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEE
Q 042884          327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG-SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLA  405 (614)
Q Consensus       327 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  405 (614)
                      .+.++.++++++ .+|.++   .+++++|+|++|+|++ ..+..|.++++|+.|++++|.+. .++...|..+       
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~-------   77 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGA-------   77 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTC-------
T ss_pred             CCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccc-------
Confidence            356777888887 777655   3578888888888875 44567788888888888888887 5555555444       


Q ss_pred             ccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc
Q 042884          406 LSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  485 (614)
Q Consensus       406 l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l  485 (614)
                                 ++|++|+|++|+++.+.+++|.++++|++|+|++|+|+++.+++|..+++|++|+|++|.+....+ ..
T Consensus        78 -----------~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~~  145 (192)
T d1w8aa_          78 -----------SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LA  145 (192)
T ss_dssp             -----------TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-GH
T ss_pred             -----------cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc-hH
Confidence                       344555555566666777888888999999999999988888888889999999999998874332 21


Q ss_pred             cCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884          486 VELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP  530 (614)
Q Consensus       486 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  530 (614)
                      .-...++.+.+..|.+++..|..   +..++..++..|.+.|.++
T Consensus       146 ~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         146 WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             HHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             HHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCC
Confidence            11234666777788888776753   3455667788888888654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-18  Score=163.71  Aligned_cols=132  Identities=16%  Similarity=0.024  Sum_probs=74.5

Q ss_pred             ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCC-ccCEEEccCCccccCCChhhhhcCC
Q 042884          272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHK-RLRQLDVSNNNFQGHIPLEIGDILP  350 (614)
Q Consensus       272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~  350 (614)
                      +..+++|+++++++|.+....+...+..+..+..+...++.+..+....|.+++ .++.|++++|+++ .++...+. .+
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~-~~  176 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFN-GT  176 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTT-TC
T ss_pred             ccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-cccccccc-ch
Confidence            334455555555555554222222223344444555555555555555555543 5666777777776 55555555 44


Q ss_pred             CccEE-EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEc
Q 042884          351 NLISF-NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLAL  406 (614)
Q Consensus       351 ~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l  406 (614)
                      +++.+ .+++|+++...+..|.++++|++|++++|+++ .+|...|.+++.|+.+++
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSE
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcC
Confidence            44444 45666676555566777777777777777776 666666555555554444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.5e-18  Score=156.94  Aligned_cols=133  Identities=26%  Similarity=0.378  Sum_probs=72.0

Q ss_pred             CcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCC
Q 042884          376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG  455 (614)
Q Consensus       376 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  455 (614)
                      .++++.++++++ .+|..++   +++++|+|++|++++                 ...+..|.++++|++|+|++|.+.+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~-----------------~~~~~~f~~l~~L~~L~L~~N~i~~   68 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGR-----------------ISSDGLFGRLPHLVKLELKRNQLTG   68 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCS-----------------BCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred             CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcc-----------------cccccccCCCceEeeeecccccccc
Confidence            457888888888 8887652   345555555554432                 1223344555555555555555555


Q ss_pred             CCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCC
Q 042884          456 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGL  529 (614)
Q Consensus       456 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~  529 (614)
                      ..++.|..+++|++|++++|+|+++.|+.|.++++|++|+|++|+|++..|.+|..+.+++.+++++|++.|+|
T Consensus        69 ~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            55555555555555555555555444445555555555555555555444444555555555555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=6.2e-18  Score=157.52  Aligned_cols=183  Identities=20%  Similarity=0.317  Sum_probs=92.7

Q ss_pred             cCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcE
Q 042884          299 NNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKI  378 (614)
Q Consensus       299 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  378 (614)
                      .+.+|++|++.+|.++.+  ..+..+++|++|++++|.++ .++.  +..+++++++++++|.++..  ..+.++++|+.
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~  111 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceee-cccc--cccccccccccccccccccc--ccccccccccc
Confidence            344555555555555543  23445555555555555554 2221  22245555555555555422  23445555555


Q ss_pred             EEccCCccCCcCCchhhccCCCCCEEEccCCcccc----cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCC
Q 042884          379 LDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT  454 (614)
Q Consensus       379 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  454 (614)
                      ++++++... .++.  +...+.++.+.++++.+..    ..+++|+.|++++|.+.+.  ..++++++|++|++++|+++
T Consensus       112 l~l~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         112 LDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             EECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc-ccch--hccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccC
Confidence            555555543 1111  1233444444444443322    1234455555555555432  22566666777777777666


Q ss_pred             CCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEecc
Q 042884          455 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA  497 (614)
Q Consensus       455 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~  497 (614)
                      ++  ..++++++|++|++++|+++++.|  +.++++|+.|+++
T Consensus       187 ~l--~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 DI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CC--GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CC--hhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            54  225666667777777776664322  5666667666665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.3e-17  Score=153.63  Aligned_cols=189  Identities=23%  Similarity=0.306  Sum_probs=104.0

Q ss_pred             hcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCC
Q 042884          146 LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSR  225 (614)
Q Consensus       146 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  225 (614)
                      +..+.+|+.|++.+|+|+..  +.+..+++|++|++++|.+. .++.  +..+++|+.+++++|.++ .+  ..+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~~~n~~~-~i--~~l~~l~~  108 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLK-NV--SAIAGLQS  108 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCS-CC--GGGTTCTT
T ss_pred             HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceee-cccc--cccccccccccccccccc-cc--cccccccc
Confidence            34456667777777766643  34666777777777777666 3332  566667777777766654 22  24556666


Q ss_pred             ccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccE
Q 042884          226 LKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKT  305 (614)
Q Consensus       226 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  305 (614)
                      |+.++++++.....                              ..+...+.++.+.++.+.+....+   +..+++|++
T Consensus       109 L~~l~l~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~L~~  155 (227)
T d1h6ua2         109 IKTLDLTSTQITDV------------------------------TPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQY  155 (227)
T ss_dssp             CCEEECTTSCCCCC------------------------------GGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCE
T ss_pred             cccccccccccccc------------------------------chhccccchhhhhchhhhhchhhh---hcccccccc
Confidence            66666665543321                              112234455666666665542222   445566666


Q ss_pred             EEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEcc
Q 042884          306 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLS  382 (614)
Q Consensus       306 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  382 (614)
                      |++++|.+....  ++..+++|+.|++++|+++ .++.  +..+++|++|++++|++++..  .++++++|++|+++
T Consensus       156 L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~-~l~~--l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         156 LSIGNAQVSDLT--PLANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccccccccccch--hhcccccceecccCCCccC-CChh--hcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            666666555422  2455556666666666655 3332  223555666666666555332  25555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.2e-20  Score=191.93  Aligned_cols=68  Identities=18%  Similarity=0.062  Sum_probs=44.1

Q ss_pred             CCccEEEcCCCcCCcc----CCccccCCCcCCEEECcCCcCCCCCCc----CCC-CCCCCCEEEccCCcCCCCCccc
Q 042884          417 SLLSGLDLSCNKLIGH----IPPQIGNLTRIQTLNLSHNNLTGLIPS----TFS-NLKHIESLDLSYNKLNGKIPHQ  484 (614)
Q Consensus       417 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~-~l~~L~~L~ls~N~l~~~~~~~  484 (614)
                      +.|++|+|++|++++.    ++..+..+++|++|+|++|+++.....    .+. +...|+.|++++|.+....+..
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~  445 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  445 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHH
Confidence            4567777777777642    334566678888999998888643211    222 3457999999999887544333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.1e-16  Score=146.68  Aligned_cols=180  Identities=22%  Similarity=0.326  Sum_probs=109.8

Q ss_pred             EccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCc
Q 042884          282 DLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA  361 (614)
Q Consensus       282 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~  361 (614)
                      .+..+.+.+.++.   ..+.+|++|++++|.++.+.  .+..+++|++|++++|.++ .++. + ..+++|++|++++|+
T Consensus        30 ~l~~~~~~~~~~~---~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~-~-~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP-L-ANLKNLGWLFLDENK  101 (210)
T ss_dssp             HTTCSCTTSEECH---HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSC
T ss_pred             HhCcCccCCccCH---HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc-c-ccCcccccccccccc
Confidence            3444555544443   23456666777776666533  3555667777777777666 3442 2 236677777777777


Q ss_pred             CCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCC
Q 042884          362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLT  441 (614)
Q Consensus       362 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  441 (614)
                      +++. + .+..+++|+.|++++|.+. .++.  +..++                  .++.+++++|.+++  +..+..++
T Consensus       102 i~~l-~-~l~~l~~L~~L~l~~~~~~-~~~~--l~~l~------------------~l~~l~~~~n~l~~--~~~~~~l~  156 (210)
T d1h6ta2         102 VKDL-S-SLKDLKKLKSLSLEHNGIS-DING--LVHLP------------------QLESLYLGNNKITD--ITVLSRLT  156 (210)
T ss_dssp             CCCG-G-GGTTCTTCCEEECTTSCCC-CCGG--GGGCT------------------TCCEEECCSSCCCC--CGGGGGCT
T ss_pred             cccc-c-ccccccccccccccccccc-cccc--ccccc------------------cccccccccccccc--cccccccc
Confidence            6642 2 4666677777777777665 3332  23333                  44444444555442  23456677


Q ss_pred             cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccC
Q 042884          442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAF  498 (614)
Q Consensus       442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~  498 (614)
                      +|+++++++|+++++.  .+.++++|++|++++|+|+. +| .+.++++|++|+|++
T Consensus       157 ~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         157 KLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            8888888888887543  37778888888888888874 44 477788888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.5e-16  Score=141.27  Aligned_cols=162  Identities=30%  Similarity=0.404  Sum_probs=75.5

Q ss_pred             cCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcE
Q 042884          299 NNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKI  378 (614)
Q Consensus       299 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  378 (614)
                      .++++++|++++|.+..+  ..+..+++|++|++++|+++ .+++ + ..+++|++|++++|.+....  .+.+++.|+.
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~-l-~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~  110 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADIT--PLANLTNLTG  110 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc-c-cCCccccccccccccccccc--cccccccccc
Confidence            345555555555555542  12344455555555555554 2222 2 22455555555555444221  2444555555


Q ss_pred             EEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCC
Q 042884          379 LDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP  458 (614)
Q Consensus       379 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  458 (614)
                      |++++|... .++.  +..                  +++|+.|++++|++.. + +.+..+++|++|++++|++++.  
T Consensus       111 L~l~~~~~~-~~~~--~~~------------------l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--  165 (199)
T d2omxa2         111 LTLFNNQIT-DIDP--LKN------------------LTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--  165 (199)
T ss_dssp             EECCSSCCC-CCGG--GTT------------------CTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--
T ss_pred             ccccccccc-cccc--cch------------------hhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--
Confidence            555555443 2111  112                  2333334444444332 1 2355555666666666665543  


Q ss_pred             cCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeE
Q 042884          459 STFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF  494 (614)
Q Consensus       459 ~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L  494 (614)
                      ..++++++|++|++++|+++. ++ .+.++++|++|
T Consensus       166 ~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         166 KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            235555666666666666553 22 34555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.6e-16  Score=141.87  Aligned_cols=145  Identities=26%  Similarity=0.336  Sum_probs=81.8

Q ss_pred             HhhccCCcEEeccCccccCCccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCch
Q 042884           65 IASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDR  144 (614)
Q Consensus        65 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~  144 (614)
                      +..+++|+++++++|.+.+ ++   .++.+++|++|++++|.++   .++ .+.. +++|+.|++++|.+.    .++  
T Consensus        64 l~~l~~L~~L~L~~n~i~~-l~---~~~~l~~L~~L~l~~n~i~---~l~-~l~~-l~~L~~L~l~~~~~~----~~~--  128 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD-IK---PLANLKNLGWLFLDENKVK---DLS-SLKD-LKKLKSLSLEHNGIS----DIN--  128 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG---GGTTCTTCCEEECCSSCCC---CGG-GGTT-CTTCCEEECTTSCCC----CCG--
T ss_pred             HhhCCCCCEEeCCCccccC-cc---ccccCcccccccccccccc---ccc-cccc-ccccccccccccccc----ccc--
Confidence            3334444444444443332 22   2445566666666666665   333 3444 666666666666554    222  


Q ss_pred             hhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCC
Q 042884          145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHS  224 (614)
Q Consensus       145 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  224 (614)
                      .+..+++++.+++++|.+++  +..+..+++|+++++++|++. .++.  ++++++|++|++++|.++ .++  .+.+++
T Consensus       129 ~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-~i~~--l~~l~~L~~L~Ls~N~i~-~l~--~l~~l~  200 (210)
T d1h6ta2         129 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHIS-DLR--ALAGLK  200 (210)
T ss_dssp             GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC-BCG--GGTTCT
T ss_pred             cccccccccccccccccccc--ccccccccccccccccccccc-cccc--ccCCCCCCEEECCCCCCC-CCh--hhcCCC
Confidence            35566666666666666653  234556666777777776666 3432  566667777777777665 332  466666


Q ss_pred             CccEEEcc
Q 042884          225 RLKIFDAE  232 (614)
Q Consensus       225 ~L~~L~l~  232 (614)
                      +|++|+++
T Consensus       201 ~L~~L~Ls  208 (210)
T d1h6ta2         201 NLDVLELF  208 (210)
T ss_dssp             TCSEEEEE
T ss_pred             CCCEEEcc
Confidence            77776664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7.3e-16  Score=139.85  Aligned_cols=120  Identities=28%  Similarity=0.370  Sum_probs=68.9

Q ss_pred             CCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccc
Q 042884           91 FPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV  170 (614)
Q Consensus        91 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  170 (614)
                      ++++++|++|++++|.+.   .++ .+.. ++.|+.|+++++...    .++  .+..+++|+.|++++|++.. + +.+
T Consensus        80 l~~l~~L~~L~l~~n~~~---~~~-~l~~-l~~L~~L~l~~~~~~----~~~--~~~~l~~L~~L~l~~n~l~~-~-~~l  146 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQIA---DIT-PLAN-LTNLTGLTLFNNQIT----DID--PLKNLTNLNRLELSSNTISD-I-SAL  146 (199)
T ss_dssp             GTTCTTCCEEECCSSCCC---CCG-GGTT-CTTCSEEECCSSCCC----CCG--GGTTCTTCSEEECCSSCCCC-C-GGG
T ss_pred             ccCCcccccccccccccc---ccc-cccc-ccccccccccccccc----ccc--ccchhhhhHHhhhhhhhhcc-c-ccc
Confidence            455566666666666554   222 2334 666666666666554    222  35566666666666666652 2 346


Q ss_pred             cCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEE
Q 042884          171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF  229 (614)
Q Consensus       171 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  229 (614)
                      ..+++|+.|++.+|+++ .++.  ++++++|++|++++|+++ .+  ..+..+++|+.|
T Consensus       147 ~~~~~L~~L~l~~n~l~-~l~~--l~~l~~L~~L~ls~N~i~-~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQVT-DLKP--LANLTTLERLDISSNKVS-DI--SVLAKLTNLESL  199 (199)
T ss_dssp             TTCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC-CC--GGGGGCTTCSEE
T ss_pred             ccccccccccccccccc-CCcc--ccCCCCCCEEECCCCCCC-CC--ccccCCCCCCcC
Confidence            66666666666666666 3432  566667777777776665 22  235556666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8e-16  Score=147.90  Aligned_cols=218  Identities=20%  Similarity=0.191  Sum_probs=158.3

Q ss_pred             cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884          279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS  358 (614)
Q Consensus       279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~  358 (614)
                      +.+|++++.+.......++.  .....+.+....+..... ......+|++||++++.+++.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            57888888775333333332  234566666655544222 233456899999999988755445566678999999999


Q ss_pred             CCcCCCCCccchhccccCcEEEccCC-ccCCcCCchhhccCCCCCEEEccCCc-ccc--------cccCCccEEEcCCCc
Q 042884          359 MNALDGSIPSSFGNINLLKILDLSNN-QLTGEIPEHLAVGCVYLDFLALSNNS-LEG--------KVLSLLSGLDLSCNK  428 (614)
Q Consensus       359 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~--------~~~~~L~~L~L~~n~  428 (614)
                      +|.+++..+..+..+++|++|++++| .+++..-..+..++++|++|+++++. +++        ...+.|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99988777788888999999999996 45533233445678999999999863 443        235789999999763


Q ss_pred             --CCcc-CCccccCCCcCCEEECcCC-cCCCCCCcCCCCCCCCCEEEccCC-cCCCCCcccccCCCCCCeEeccCC
Q 042884          429 --LIGH-IPPQIGNLTRIQTLNLSHN-NLTGLIPSTFSNLKHIESLDLSYN-KLNGKIPHQLVELKTLEVFSLAFN  499 (614)
Q Consensus       429 --l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~N-~l~~~~~~~l~~l~~L~~L~l~~N  499 (614)
                        +++. +...+.++++|++|++++| .+++.....+..+++|++|++++| .++......+..+++|+.|+++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              4422 2233467899999999987 577666677888999999999995 677666667888999999999987

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1e-15  Score=147.18  Aligned_cols=213  Identities=18%  Similarity=0.181  Sum_probs=129.6

Q ss_pred             CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCC-ccccCCChhhhhcCCCc
Q 042884          274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN-NFQGHIPLEIGDILPNL  352 (614)
Q Consensus       274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L  352 (614)
                      ...+|++||++++.+.+.....++..+++|++|+++++.+.......+..+++|++|+++++ .+++..-..+...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34578889998888775544555778888888888888776544455666777888888774 34321111233446777


Q ss_pred             cEEEccCCc-CCCC-Cccchhc-cccCcEEEccCCc--cCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCC
Q 042884          353 ISFNISMNA-LDGS-IPSSFGN-INLLKILDLSNNQ--LTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN  427 (614)
Q Consensus       353 ~~L~L~~n~-l~~~-~~~~~~~-l~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n  427 (614)
                      ++|++++|. ++.. ....+.. .++|+.|+++++.  +++.....+...+                  ++|++|++++|
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~------------------~~L~~L~L~~~  185 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC------------------PNLVHLDLSDS  185 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC------------------TTCSEEECTTC
T ss_pred             cccccccccccccccchhhhcccccccchhhhccccccccccccccccccc------------------ccccccccccc
Confidence            777777753 3321 1122222 3567777776642  2222122223334                  45555555554


Q ss_pred             -cCCccCCccccCCCcCCEEECcCC-cCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884          428 -KLIGHIPPQIGNLTRIQTLNLSHN-NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI  505 (614)
Q Consensus       428 -~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  505 (614)
                       .+++.....+..+++|++|++++| .+++.....++.+++|+.|+++++.-.+..+.....+|+|   .+..++++...
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~~  262 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIA  262 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCTT
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCCC
Confidence             355555667788899999999996 6766555678889999999999882222222222345554   45677777554


Q ss_pred             Cc
Q 042884          506 PE  507 (614)
Q Consensus       506 ~~  507 (614)
                      +.
T Consensus       263 ~~  264 (284)
T d2astb2         263 RP  264 (284)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.7e-14  Score=122.33  Aligned_cols=111  Identities=18%  Similarity=0.217  Sum_probs=82.1

Q ss_pred             ccEEEcCCCcCCccCCccccCCCcCCEEECcCC-cCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEecc
Q 042884          419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN-NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA  497 (614)
Q Consensus       419 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~  497 (614)
                      .+.++.+++.+. ..|..+.++++|++|++++| .++.+.+++|.++++|+.|++++|+|+.+.|..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344666666665 44566777788888888655 4777777788888888888888888887777788888888888888


Q ss_pred             CCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884          498 FNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL  531 (614)
Q Consensus       498 ~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  531 (614)
                      +|+++...+..+.. ..++.+++++|||.|+|..
T Consensus        89 ~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          89 FNALESLSWKTVQG-LSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             SSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGGG
T ss_pred             CCCCcccChhhhcc-ccccccccCCCcccCCchH
Confidence            88888555554443 3677888888888888754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.1e-14  Score=122.88  Aligned_cols=128  Identities=16%  Similarity=0.144  Sum_probs=106.2

Q ss_pred             ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCC
Q 042884          272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPN  351 (614)
Q Consensus       272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~  351 (614)
                      +.++.++++|+|++|+|+ .++.. +..+++|+.|++++|.++.+  ..+..+++|++|++++|.++ .++..++..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~-~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENL-GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCG-GGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCcc-ccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            446778999999999998 66653 67899999999999999976  35788999999999999998 677777767999


Q ss_pred             ccEEEccCCcCCCCCc-cchhccccCcEEEccCCccCCcCCc---hhhccCCCCCEEE
Q 042884          352 LISFNISMNALDGSIP-SSFGNINLLKILDLSNNQLTGEIPE---HLAVGCVYLDFLA  405 (614)
Q Consensus       352 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~  405 (614)
                      |++|++++|+++.... ..+..+++|++|++++|.++ ..|.   .++..+++|++||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            9999999999985432 56888999999999999997 6664   3556778887776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.3e-14  Score=124.54  Aligned_cols=60  Identities=22%  Similarity=0.192  Sum_probs=27.1

Q ss_pred             ccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCC-cCCCCCCCCCEEEccCCcCC
Q 042884          419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLN  478 (614)
Q Consensus       419 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~  478 (614)
                      |++|++++|+++...+..+..+++|++|++++|+++.... ..+..+++|++|++++|+++
T Consensus        65 L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          65 LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             hhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccc
Confidence            3334444444443333334445555555555555543221 23444555555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1e-13  Score=114.35  Aligned_cols=103  Identities=28%  Similarity=0.461  Sum_probs=55.4

Q ss_pred             CEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEE
Q 042884          125 KYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL  204 (614)
Q Consensus       125 ~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  204 (614)
                      |+|++++|+++    .++  .+..+++|++|++++|+++ .+|..|..+++|+.|++++|.++ .+|.  +..+++|++|
T Consensus         1 R~L~Ls~n~l~----~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLT----VLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCS----SCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEE
T ss_pred             CEEEcCCCCCC----CCc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeE
Confidence            34555555554    232  2455555566666666555 34455555556666666666555 4442  5555666666


Q ss_pred             EcccCcCccccCcccccCCCCccEEEccCCccc
Q 042884          205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELN  237 (614)
Q Consensus       205 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  237 (614)
                      ++++|++........+..+++|+.+++++|.+.
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            666665552222234555566666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=4.3e-14  Score=139.99  Aligned_cols=233  Identities=16%  Similarity=0.170  Sum_probs=127.9

Q ss_pred             ccccCCCCCcEEEccCCCCCCCCChhH---HhcCCCccEEEccCCCCCCCCC----------CCCCCCCccCEEEccCCc
Q 042884          270 KFLYHQHDLEYVDLSHTKMNGEFPNWL---LENNTKLKTLFLVNDSLAGPFR----------LPIHSHKRLRQLDVSNNN  336 (614)
Q Consensus       270 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~---~~~~~~L~~L~l~~n~i~~~~~----------~~~~~l~~L~~L~l~~n~  336 (614)
                      ..+.....++.|+|++|.+.......+   +...++|+.++++++.......          ..+...++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            445566778888888877753322221   3455677777777665443211          113345667777777777


Q ss_pred             cccCCChh---hhhcCCCccEEEccCCcCCCCCccc-------------hhccccCcEEEccCCccCCcCCch---hhcc
Q 042884          337 FQGHIPLE---IGDILPNLISFNISMNALDGSIPSS-------------FGNINLLKILDLSNNQLTGEIPEH---LAVG  397 (614)
Q Consensus       337 i~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~---~~~~  397 (614)
                      ++......   .....++|+.|++++|.+.......             ....+.|+.+++++|.+.......   .+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            65321111   1123567777777777654211111             123456777777777665222111   1244


Q ss_pred             CCCCCEEEccCCcccc-----------cccCCccEEEcCCCcCCcc----CCccccCCCcCCEEECcCCcCCCCCCc---
Q 042884          398 CVYLDFLALSNNSLEG-----------KVLSLLSGLDLSCNKLIGH----IPPQIGNLTRIQTLNLSHNNLTGLIPS---  459 (614)
Q Consensus       398 ~~~L~~L~l~~n~l~~-----------~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~---  459 (614)
                      ++.|+.+++++|+++.           ...+.|+.|++++|.++..    +...+..+++|++|+|++|.+++....   
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            5667777777766643           1235567777777766432    234456667777777777776533111   


Q ss_pred             -CCC--CCCCCCEEEccCCcCCCC----Cccccc-CCCCCCeEeccCCcCc
Q 042884          460 -TFS--NLKHIESLDLSYNKLNGK----IPHQLV-ELKTLEVFSLAFNNLS  502 (614)
Q Consensus       460 -~~~--~l~~L~~L~ls~N~l~~~----~~~~l~-~l~~L~~L~l~~N~l~  502 (614)
                       .+.  ..+.|++|++++|+|...    +...+. ..+.|++|++++|++.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence             111  235677777777776532    122232 3566777777777775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=8.2e-13  Score=108.75  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=43.4

Q ss_pred             EEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccC
Q 042884          280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM  359 (614)
Q Consensus       280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~  359 (614)
                      +|++++|+++ .++.  ++.++.|++|++++|.++.++ ..+..+++|+.|++++|.++ .+|. +. .+++|++|++++
T Consensus         2 ~L~Ls~n~l~-~l~~--l~~l~~L~~L~ls~N~l~~lp-~~~~~l~~L~~L~l~~N~i~-~l~~-~~-~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALE-NVDG-VA-NLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCEEECCS
T ss_pred             EEEcCCCCCC-CCcc--cccCCCCCEEECCCCccCcch-hhhhhhhccccccccccccc-ccCc-cc-cccccCeEECCC
Confidence            4555555554 3332  344445555555555444432 23444444444444444444 3321 21 244444444444


Q ss_pred             CcCCCCC-ccchhccccCcEEEccCCcc
Q 042884          360 NALDGSI-PSSFGNINLLKILDLSNNQL  386 (614)
Q Consensus       360 n~l~~~~-~~~~~~l~~L~~L~l~~n~l  386 (614)
                      |+++... ...+..+++|++|++++|.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            4444221 12344444444444444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=6.5e-15  Score=146.04  Aligned_cols=211  Identities=15%  Similarity=0.164  Sum_probs=120.7

Q ss_pred             ccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCcc---chHHHhhccCCcEEeccCccccCC
Q 042884            9 KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHIS---LLQSIASLFPSLKNLSMSYCEVNG   84 (614)
Q Consensus         9 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~---~~~~~~~l~~l~~l~l~~~~~~~~   84 (614)
                      .+..++...+.+++|+|++|.|.......+. .+...++|+.++++++.....   .+..+..+                
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l----------------   85 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL----------------   85 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH----------------
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHH----------------
Confidence            4556677788888899988887653222233 567778888888887754321   12222111                


Q ss_pred             ccCCCCCCCCCCCCEEeCcCcccCCC--cchhhHhhhcCCCcCEEeccCCcCCCCCCCcCch---------hhcCCCCCC
Q 042884           85 VVRGQGFPHFKSLEHLNMERARIAPN--TSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDR---------GLCSLMHLQ  153 (614)
Q Consensus        85 ~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~---------~~~~l~~L~  153 (614)
                       .  ..+..+++|++|++++|.+...  ..+...+.. .++|+.|++++|.+..........         .....+.|+
T Consensus        86 -~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~  161 (344)
T d2ca6a1          86 -L--QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR  161 (344)
T ss_dssp             -H--HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             -H--HHHhhCCCcccccccccccccccccchhhhhcc-cccchheecccccccccccccccccccccccccccccCcccc
Confidence             0  1244456677777777766531  123333444 677777777776653200000000         113456777


Q ss_pred             eEECcCCcccccc----CccccCCCCCcEEEcccCCCCCc----cCCCCCCCCCCCCEEEcccCcCccc---cCcccccC
Q 042884          154 ELYKVNNDLRGSL----PWCVANMTSLRILDVSSNQLTGS----IASSPLAHLTSIEELHLSDNHFRIP---ISLEPLFN  222 (614)
Q Consensus       154 ~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~~~~~  222 (614)
                      .+++++|.++...    ..++..++.|+.|++++|.+...    +....+..+++|++|++++|.++..   .-...+..
T Consensus       162 ~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             eeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc
Confidence            7777777765432    23345567788888888777521    1122356677788888888776521   01123556


Q ss_pred             CCCccEEEccCCccccc
Q 042884          223 HSRLKIFDAENNELNAE  239 (614)
Q Consensus       223 l~~L~~L~l~~n~~~~~  239 (614)
                      +++|++|++++|.+.+.
T Consensus       242 ~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             CTTCCEEECTTCCCCHH
T ss_pred             cccchhhhhhcCccCch
Confidence            77788888888877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.1e-13  Score=114.52  Aligned_cols=132  Identities=17%  Similarity=0.213  Sum_probs=94.9

Q ss_pred             cCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCC-cCCccCCccccCCCcCCEEECcCCcC
Q 042884          375 LLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNL  453 (614)
Q Consensus       375 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l  453 (614)
                      ..+.++.+++.+. ..|..+ .+                  .++|++|++++| .++.+.+++|.++++|+.|+|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l-~~------------------l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   68 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHL-PG------------------AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL   68 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTS-CS------------------CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC
T ss_pred             CCCeEEecCCCCc-cCcccc-cC------------------ccccCeeecCCCccccccCchhhccccccCcceeecccc
Confidence            3455777777776 556554 23                  345666666554 47767778899999999999999999


Q ss_pred             CCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC-ccccccCCcCcccccCCcCCC
Q 042884          454 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP-EWKAQFATFNESSYEGNTFLC  527 (614)
Q Consensus       454 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~~~~~~n~~~c  527 (614)
                      +.+.+.+|..+++|++|+|++|+|+.+.+..|.. .+|+.|+|++|++.+... .|+..|.......+..+...|
T Consensus        69 ~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C  142 (156)
T d2ifga3          69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQC  142 (156)
T ss_dssp             CEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCC
T ss_pred             CCcccccccccccccceeccCCCCcccChhhhcc-ccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEE
Confidence            9999999999999999999999999666666655 479999999999985332 234444333333333344444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=9.6e-14  Score=124.97  Aligned_cols=131  Identities=21%  Similarity=0.288  Sum_probs=77.7

Q ss_pred             CCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCc
Q 042884          340 HIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLL  419 (614)
Q Consensus       340 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L  419 (614)
                      .++..+.. +++|++|+|++|+|+.. + .+..+++|++|++++|.++ .+|... ..                  ++.|
T Consensus        39 ~l~~sl~~-L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~-~~------------------~~~L   95 (198)
T d1m9la_          39 KMDATLST-LKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLD-AV------------------ADTL   95 (198)
T ss_dssp             CCHHHHHH-TTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHH-HH------------------HHHC
T ss_pred             hhhhHHhc-ccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccc-cc------------------cccc
Confidence            34444444 77777777777777643 2 4677777777777777776 554322 11                  2344


Q ss_pred             cEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCC-cCCCCCCCCCEEEccCCcCCCCCccc----------ccCC
Q 042884          420 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQ----------LVEL  488 (614)
Q Consensus       420 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~~~----------l~~l  488 (614)
                      +.|++++|+++..  ..+..+++|++|++++|+++.... ..+..+++|+.|++++|++....+..          +..+
T Consensus        96 ~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~l  173 (198)
T d1m9la_          96 EELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             CEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHC
T ss_pred             ccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHC
Confidence            4555555555532  236667777777777777764422 35667777777777777665332221          3456


Q ss_pred             CCCCeEe
Q 042884          489 KTLEVFS  495 (614)
Q Consensus       489 ~~L~~L~  495 (614)
                      |+|+.||
T Consensus       174 p~L~~LD  180 (198)
T d1m9la_         174 PNLKKLD  180 (198)
T ss_dssp             SSCCEES
T ss_pred             CCcCEeC
Confidence            6666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.6e-13  Score=123.53  Aligned_cols=130  Identities=23%  Similarity=0.259  Sum_probs=95.3

Q ss_pred             ccEEEccCC--cCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcC
Q 042884          352 LISFNISMN--ALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKL  429 (614)
Q Consensus       352 L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l  429 (614)
                      .+.+++.+.  .+. .++.++..+++|++|++++|+|+ .++.  +.++++|+.|                  ++++|.+
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L------------------~Ls~N~i   82 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRIL------------------SLGRNLI   82 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCCC--HHHHTTCCEE------------------ECCEEEE
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Cccc--ccCCccccCh------------------hhccccc
Confidence            444555443  232 45678899999999999999998 6653  3455555555                  4555555


Q ss_pred             CccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCc-ccccCCCCCCeEeccCCcCcccCC
Q 042884          430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVFSLAFNNLSGEIP  506 (614)
Q Consensus       430 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~  506 (614)
                      + .++..+..+++|++|++++|+++.+  ..+..+++|+.|++++|+|+.... ..+..+++|+.|++++|++....+
T Consensus        83 ~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_          83 K-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             C-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             c-ccccccccccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            4 3455556667899999999999865  457888999999999999985432 468899999999999999875544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.4e-08  Score=87.26  Aligned_cols=71  Identities=28%  Similarity=0.253  Sum_probs=44.1

Q ss_pred             ccccCCCcCCEEECcCCcCCCCC--CcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884          435 PQIGNLTRIQTLNLSHNNLTGLI--PSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI  505 (614)
Q Consensus       435 ~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  505 (614)
                      ..+..+++|++|+|++|+|+...  +..+..+++|+.|++++|.|+...+-.+.....|+.+++++|++.+..
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            34455677777777777776543  233556677777777777777443323334456777777777776543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.9e-06  Score=73.48  Aligned_cols=81  Identities=20%  Similarity=0.157  Sum_probs=40.8

Q ss_pred             CCCcCEEeccCCcCCCCCCCcCc--hhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCC------
Q 042884          121 TPSLKYLSLSDFTLSTNSSRILD--RGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIAS------  192 (614)
Q Consensus       121 l~~L~~L~L~~n~l~~~~~~i~~--~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------  192 (614)
                      +++|++|+|++|.++.    +.+  ..+..+++|+.|++++|+|+...+-.+.....|+.|++++|.+.+....      
T Consensus        64 ~~~L~~L~Ls~N~i~~----l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          64 IPELLSLNLSNNRLYR----LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             CTTCCCCCCCSSCCCC----CSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             CCCCCEeeCCCccccC----CchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            5566666666665552    221  1344556666666666666543332333334566666666665522211      


Q ss_pred             CCCCCCCCCCEEE
Q 042884          193 SPLAHLTSIEELH  205 (614)
Q Consensus       193 ~~~~~l~~L~~L~  205 (614)
                      ..+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            1134566666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.69  E-value=1.6e-05  Score=67.91  Aligned_cols=13  Identities=15%  Similarity=0.015  Sum_probs=6.8

Q ss_pred             CCCCCCEEEcccC
Q 042884          197 HLTSIEELHLSDN  209 (614)
Q Consensus       197 ~l~~L~~L~L~~n  209 (614)
                      ..+.|++|+++.+
T Consensus       129 ~n~sL~~l~l~~~  141 (167)
T d1pgva_         129 ENESLLRVGISFA  141 (167)
T ss_dssp             HCSSCCEEECCCC
T ss_pred             hCCCccEeeCcCC
Confidence            3455555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=9.2e-06  Score=69.45  Aligned_cols=92  Identities=18%  Similarity=0.192  Sum_probs=49.4

Q ss_pred             hhcCCCCCCeEECcCCcccccc----CccccCCCCCcEEEcccCCCCCccC---CCCCCCCCCCCEEEcccCcCcc--c-
Q 042884          145 GLCSLMHLQELYKVNNDLRGSL----PWCVANMTSLRILDVSSNQLTGSIA---SSPLAHLTSIEELHLSDNHFRI--P-  214 (614)
Q Consensus       145 ~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~~~~--~-  214 (614)
                      ++...+.|++|++++|.++...    ...+...+.|++|+|++|.+.+.-.   ..++...++|++|++++|.+..  . 
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            3445555666666666554322    1233344566666666666652100   0124556677777777765431  0 


Q ss_pred             ---cCcccccCCCCccEEEccCCcc
Q 042884          215 ---ISLEPLFNHSRLKIFDAENNEL  236 (614)
Q Consensus       215 ---~~~~~~~~l~~L~~L~l~~n~~  236 (614)
                         .-...+...+.|+.++++.+..
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCCc
Confidence               0112345567888998877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.18  E-value=1.5e-05  Score=68.02  Aligned_cols=46  Identities=15%  Similarity=0.172  Sum_probs=25.2

Q ss_pred             CCCCCCCEEECCC-cccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCcc
Q 042884           15 GSLPSLNTLYLKH-NNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHIS   60 (614)
Q Consensus        15 ~~l~~L~~L~Ls~-n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~   60 (614)
                      .+.+.|++|+|++ +.++......+. .+...++|+.|++++|.+...
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~   61 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP   61 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHH
Confidence            4456777777776 345432211122 455666677777777666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.12  E-value=0.00011  Score=62.48  Aligned_cols=42  Identities=12%  Similarity=0.163  Sum_probs=17.9

Q ss_pred             CCCCCCEEeCcCcccCC--CcchhhHhhhcCCCcCEEeccCCcCC
Q 042884           93 HFKSLEHLNMERARIAP--NTSFLQIIGESTPSLKYLSLSDFTLS  135 (614)
Q Consensus        93 ~l~~L~~L~l~~n~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~  135 (614)
                      ..++|++|++++|.+..  ...+...+.. .+.++.++++++.+.
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~-~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhh-cccchhhhhcccccc
Confidence            34455555555555432  0011122222 445555555554443