Citrus Sinensis ID: 042887

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MVILMILLACLIIVYTGRRKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITLLKVVIPVAVI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccEEEEccccEEEcccHHHHccccccccccccccccccccHHHcccccccccccccccccccccHHcccccccccEEcccccccccccHHHHcccccccEEEEcccEEEccccHHHHHHcccccEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccEEEEcccccccccccccEEEccccEEEEcccHHHcccccccEEEccccEEEccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEcccccccccccccccccccccHHHHccccccccccccccccccccccccccccEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccHHHEEEccccEEEEEEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccccHHHHHccccccccccccccccccccccEEEEEcEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEEccccccccccHHHcccccccEEEEcccccccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHccHHHHHHHHHHEccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHccccccccccEc
Coil and Loop (DISEMBL)
MVILMILLACLIIVYTgrrkhtqkssrtlpmeqqfpmvsyadlskatnnfsasnmigqgsfgfvykgklgetgTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCssidfkgvDFKALIYEYMKcgssedwmhqsndkleagnlGLIQRLNLLKLEmidvgdnqligkfpdfIANFSALEAIDISanmlggripdslcqlrslnylsisennfscklplsiwnISSLEIISLHsnrfegslplnigfnipnvnflsvgqnnftgslphsfsnasnlqvLDVYKNHfsgqvkidfnrlsnlSRLFlsknnlgtestsdlDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVigmgdnqisgtipseiknlvNINAFGveynqltgtiPHAIGELKNLQGLALVRNSlrgtipdtlgnlTLLNRLFLGFnnlqgnvpsslgncqnlmTLSRLLDLSgnllggsiplevgnlrnlaefdlsenhfsneipvtlsaCTTLEYLHlqgnsfsgslplsLKTLKSIKELdlsrnnlsgqIPKYLENLLFLAYLNLSYnhfegevprkgvfgnrtgihlignerlcggleelhlpschfgrpritrITLLKVVIPVAVI
Flexible Loop (DISEMBL)
MVILMILLACLIIVYtgrrkhtqkssrtlpmeqqFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIItvcssidfkGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNnlgtestsdLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSChfgrpritritllkvvipvavi
Low Complexity Region (SEG)
MVILMILLACLIIVYTGRRKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDfnrlsnlsrlflsknnlGtestsdldfltlltNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDtlgnltllnrlflgfnnlQGNVPSSLGNCQNLMTlsrlldlsgnllggsIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKylenllflaylnlsynHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITLLKVVIPVAVI
Disordered region (IsUnstruct)
*VILMILLACLIIVYTGR*********************Y*******NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITLLKVVIPVAV*
Disordered Region (DISOPRED)
MVILMILLACLIIVY********************PMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEE*******************KVVIPVAVI
Disordered Region (DISEMBL)
MVILMILLACLIIVYTG*********RTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITLLKVVIPVAVI
Disordered Region (DISPRO)
MVILMILLACLIIVYTGRRK************QQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITLLKVVIPVAVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVILMILLACLIIVYTGRRKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITLLKVVIPVAVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	628	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.742	0.461	0.407	6e-91
C0LGT6	1031	LRR receptor-like serine/	no	no	0.710	0.432	0.402	9e-87
Q9SD62	1025	Putative receptor-like pr	no	no	0.724	0.443	0.405	2e-82
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.694	0.444	0.346	5e-61
Q9FL28	1173	LRR receptor-like serine/	no	no	0.711	0.381	0.337	2e-58
Q9LHP4	1141	Receptor-like protein kin	no	no	0.684	0.376	0.336	6e-55
C0LGV1	1135	LRR receptor-like serine/	no	no	0.640	0.354	0.344	4e-54
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.675	0.338	0.329	9e-52
P93194	1109	Receptor-like protein kin	N/A	no	0.632	0.357	0.328	6e-51
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.652	0.372	0.318	8e-51

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  335 bits (859), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 200/491 (40%), Positives = 295/491 (60%), Gaps = 25/491 (5%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           +L  L  +++  N + GK P  + N + LE + +S N L G IP  + QL  +  L +  
Sbjct: 160 SLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVA 219

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           NNFS   P +++N+SSL+++ +  N F G L  ++G  +PN+   ++G N FTGS+P + 
Sbjct: 220 NNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTL 279

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
           SN S L+ L + +N+ +G +   F  + NL  LFL  N+LG++S+ DL+FLT LTNC+Q+
Sbjct: 280 SNISTLERLGMNENNLTGSIPT-FGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQL 338

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
           E L +  N+ GG    SIANLSAK+  + +G   ISG+IP +I NL+N+    ++ N L+
Sbjct: 339 ETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLS 398

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQN 459
           G +P ++G+L NL+ L+L  N L G IP  +GN+T+L  L L  N  +G VP+SLGNC +
Sbjct: 399 GPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSH 458

Query: 460 L------------------MTLSRL--LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499
           L                  M + +L  LD+SGN L GS+P ++G L+NL    L +N  S
Sbjct: 459 LLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLS 518

Query: 500 NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559
            ++P TL  C T+E L L+GN F G +P  LK L  +KE+DLS N+LSG IP+Y  +   
Sbjct: 519 GKLPQTLGNCLTMESLFLEGNLFYGDIP-DLKGLVGVKEVDLSNNDLSGSIPEYFASFSK 577

Query: 560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRI--- 616
           L YLNLS+N+ EG+VP KG+F N T + ++GN  LCGG+    L  C    P + +    
Sbjct: 578 LEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCLSQAPSVVKKHSS 637

Query: 617 TLLKVVIPVAV 627
            L KVVI V+V
Sbjct: 638 RLKKVVIGVSV 648

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  321 bits (823), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 188/467 (40%), Positives = 278/467 (59%), Gaps = 21/467 (4%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           +L KL ++D+  N L G FP  + N ++L+ +D + N + G IPD + +L  + +  I+ 
Sbjct: 167 SLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIAL 226

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N+FS   P +++NISSLE +SL  N F G+L  + G+ +PN+  L +G N FTG++P + 
Sbjct: 227 NSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTL 286

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
           +N S+L+  D+  N+ SG + + F +L NL  L +  N+LG  S+S L+F+  + NC+Q+
Sbjct: 287 ANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQL 346

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
           E L +  N+ GG    SIANLS  +T + +G N ISGTIP +I NLV++    +E N L+
Sbjct: 347 EYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLS 406

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQN 459
           G +P + G+L NLQ + L  N++ G IP   GN+T L +L L  N+  G +P SLG C+ 
Sbjct: 407 GELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRY 466

Query: 460 LMTL----SRL----------------LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499
           L+ L    +RL                +DLS N L G  P EVG L  L     S N  S
Sbjct: 467 LLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLS 526

Query: 500 NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559
            ++P  +  C ++E+L +QGNSF G++P  +  L S+K +D S NNLSG+IP+YL +L  
Sbjct: 527 GKMPQAIGGCLSMEFLFMQGNSFDGAIP-DISRLVSLKNVDFSNNNLSGRIPRYLASLPS 585

Query: 560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC 606
           L  LNLS N FEG VP  GVF N T + + GN  +CGG+ E+ L  C
Sbjct: 586 LRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPC 632

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  307 bits (787), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 194/478 (40%), Positives = 289/478 (60%), Gaps = 23/478 (4%)

Query: 170 GDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLS 229
           G N L GKFP  + N ++L+ +D   N + G IP  + +L+ + +  I+ N F+   P  
Sbjct: 185 GRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPP 244

Query: 230 IWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLD 289
           I+N+SSL  +S+  N F G+L  + G  +PN+  L +G N+FTG++P + SN S+L+ LD
Sbjct: 245 IYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLD 304

Query: 290 VYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKF 349
           +  NH +G++ + F RL NL  L L+ N+LG  S+ DLDFL  LTNCSQ++ L +  NK 
Sbjct: 305 IPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKL 364

Query: 350 GGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGEL 409
           GG     IANLS ++T + +G N ISG+IP  I NLV++    +  N LTG +P ++GEL
Sbjct: 365 GGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGEL 424

Query: 410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLS----- 464
             L+ + L  N L G IP +LGN++ L  L+L  N+ +G++PSSLG+C  L+ L+     
Sbjct: 425 SELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNK 484

Query: 465 ---------------RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSAC 509
                           +L++S NLL G +  ++G L+ L   D+S N  S +IP TL+ C
Sbjct: 485 LNGSIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFLLALDVSYNKLSGQIPQTLANC 544

Query: 510 TTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569
            +LE+L LQGNSF G +P  ++ L  ++ LDLS+NNLSG IP+Y+ N   L  LNLS N+
Sbjct: 545 LSLEFLLLQGNSFVGPIP-DIRGLTGLRFLDLSKNNLSGTIPEYMANFSKLQNLNLSLNN 603

Query: 570 FEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITLLKVVIPVAV 627
           F+G VP +GVF N + + + GN  LCGG+  L L  C    PR  R + ++ +I + V
Sbjct: 604 FDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPCSVELPR--RHSSVRKIITICV 659

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  236 bits (602), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 172/497 (34%), Positives = 251/497 (50%), Gaps = 61/497 (12%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANF-SALEAIDISANMLGGRIPDSLCQLRSLNYLSIS 218
           NL  L ++D+  N  +GK P  I +    L+ + +S N+L G IP  L  L  L YL + 
Sbjct: 88  NLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIPQELGLLNRLVYLDLG 147

Query: 219 ENNFSCKLPLSIW---NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSL 275
            N  +  +P+ ++   + SSL+ I L +N   G +PLN   ++  + FL +  N  TG++
Sbjct: 148 SNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTV 207

Query: 276 PHSFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLGTES--TSDLDFLTL 332
           P S SN++NL+ +D+  N  SG++     +++  L  L+LS N+  + +  T+   F   
Sbjct: 208 PSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFAS 267

Query: 333 LTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI---------- 382
           L N S ++ L L  N  GG    S+ +LS  +  I +  N+I G+IP EI          
Sbjct: 268 LANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEISNLLNLTLLN 327

Query: 383 -----------KNLVNINAFGVEY---NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPD 428
                      + L  ++     Y   N LTG IP  +G++  L  L + RN+L G+IPD
Sbjct: 328 LSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPD 387

Query: 429 TLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRN 487
           + GNL+ L RL L  N+L G VP SLG C NL     +LDLS N L G+IP+EV  NLRN
Sbjct: 388 SFGNLSQLRRLLLYGNHLSGTVPQSLGKCINL----EILDLSHNNLTGTIPVEVVSNLRN 443

Query: 488 LAEF-------------------------DLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522
           L  +                         DLS N  S +IP  L +C  LE+L+L  N F
Sbjct: 444 LKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGF 503

Query: 523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
           S +LP SL  L  +KELD+S N L+G IP   +    L +LN S+N   G V  KG F  
Sbjct: 504 SSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSK 563

Query: 583 RTGIHLIGNERLCGGLE 599
            T    +G+  LCG ++
Sbjct: 564 LTIESFLGDSLLCGSIK 580

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  227 bits (578), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 249/489 (50%), Gaps = 42/489 (8%)

Query: 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN 220
           L  LE++ +  N   G+FP  I N   L  + +  N + G +P  L  L +L  LS  +N
Sbjct: 335 LESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDN 394

Query: 221 NFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS 280
             +  +P SI N + L+++ L  N+  G +P   GF   N+ F+S+G+N+FTG +P    
Sbjct: 395 LLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR--GFGRMNLTFISIGRNHFTGEIPDDIF 452

Query: 281 NASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQME 340
           N SNL+ L V  N+ +G +K    +L  L  L +S N+L      ++       N   + 
Sbjct: 453 NCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIG------NLKDLN 506

Query: 341 MLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG 400
           +LYL++N F G   R ++NL+  +  + M  N + G IP E+ ++  ++   +  N+ +G
Sbjct: 507 ILYLHSNGFTGRIPREMSNLTL-LQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSG 565

Query: 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNL 460
            IP    +L++L  L+L  N   G+IP +L +L+LLN   +  N L G +P  L    +L
Sbjct: 566 QIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGEL--LASL 623

Query: 461 MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT---TLEY--- 514
             +   L+ S NLL G+IP E+G L  + E DLS N FS  IP +L AC    TL++   
Sbjct: 624 KNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQN 683

Query: 515 -------------------LHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLE 555
                              L+L  NSFSG +P S   +  +  LDLS NNL+G+IP+ L 
Sbjct: 684 NLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLA 743

Query: 556 NLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEEL-----HLPSCHFG- 609
           NL  L +L L+ N+ +G VP  GVF N     L+GN  LCG  + L        S HF  
Sbjct: 744 NLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCTIKQKSSHFSK 803

Query: 610 RPRITRITL 618
           R R+  I L
Sbjct: 804 RTRVILIIL 812

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  216 bits (549), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 155/460 (33%), Positives = 232/460 (50%), Gaps = 30/460 (6%)

Query: 164 LEMIDVGDNQLI-GKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNF 222
           LE+I +G N+ I G+ P  I + S L  + ++   + G +P SL +L+ L  LSI     
Sbjct: 203 LEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMI 262

Query: 223 SCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNA 282
           S ++P  + N S L  + L+ N   GS+P  IG  +  +  L + QN+  G +P    N 
Sbjct: 263 SGEIPSDLGNCSELVDLFLYENSLSGSIPREIG-QLTKLEQLFLWQNSLVGGIPEEIGNC 321

Query: 283 SNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEML 342
           SNL+++D+  N  SG +     RLS L    +S N             T ++NCS +  L
Sbjct: 322 SNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGS------IPTTISNCSSLVQL 375

Query: 343 YLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTI 402
            L+ N+  G+    +  L+ K+T+     NQ+ G+IP  + +  ++ A  +  N LTGTI
Sbjct: 376 QLDKNQISGLIPSELGTLT-KLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTI 434

Query: 403 PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMT 462
           P  +  L+NL  L L+ NSL G IP  +GN + L RL LGFN + G +PS +G+ + +  
Sbjct: 435 PSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINF 494

Query: 463 LS--------------------RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEI 502
           L                     +++DLS N L GS+P  V +L  L   D+S N FS +I
Sbjct: 495 LDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKI 554

Query: 503 PVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAY 562
           P +L    +L  L L  N FSGS+P SL     ++ LDL  N LSG+IP  L ++  L  
Sbjct: 555 PASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEI 614

Query: 563 -LNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEEL 601
            LNLS N   G++P K    N+  I  + +  L G L  L
Sbjct: 615 ALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLAPL 654

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  213 bits (542), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 143/415 (34%), Positives = 218/415 (52%), Gaps = 13/415 (3%)

Query: 164 LEMIDVGDN-QLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNF 222
           LE I  G N +L GK P+ I N   L+ + ++A  + G +P SL QL  L  LS+     
Sbjct: 204 LESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTML 263

Query: 223 SCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNA 282
           S ++P  + N S L  + L+ N   G+LP  +G  + N+  + + QNN  G +P      
Sbjct: 264 SGEIPKELGNCSELINLFLYDNDLSGTLPKELG-KLQNLEKMLLWQNNLHGPIPEEIGFM 322

Query: 283 SNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEML 342
            +L  +D+  N+FSG +   F  LSNL  L LS NN+     S      +L+NC+++   
Sbjct: 323 KSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPS------ILSNCTKLVQF 376

Query: 343 YLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTI 402
            ++ N+  G+    I  L      +G   N++ G IP E+    N+ A  +  N LTG++
Sbjct: 377 QIDANQISGLIPPEIGLLKELNIFLGW-QNKLEGNIPDELAGCQNLQALDLSQNYLTGSL 435

Query: 403 PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMT 462
           P  + +L+NL  L L+ N++ G IP  +GN T L RL L  N + G +P  +G  QNL  
Sbjct: 436 PAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNL-- 493

Query: 463 LSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522
               LDLS N L G +PLE+ N R L   +LS N     +P++LS+ T L+ L +  N  
Sbjct: 494 --SFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDL 551

Query: 523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK 577
           +G +P SL  L S+  L LS+N+ +G+IP  L +   L  L+LS N+  G +P +
Sbjct: 552 TGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEE 606

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  205 bits (521), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 234/465 (50%), Gaps = 41/465 (8%)

Query: 152 NLGLIQRLNLLK-LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLR 210
           N  L   LN LK L+ +++GDN   G+ P  + +  +++ +++  N L G IP  L +L 
Sbjct: 229 NGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELA 288

Query: 211 SLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNN 270
           +L  L +S NN +  +    W ++ LE + L  NR  GSLP  I  N  ++  L + +  
Sbjct: 289 NLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQ 348

Query: 271 FTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL-GTESTS---- 325
            +G +P   SN  +L++LD+  N  +GQ+     +L  L+ L+L+ N+L GT S+S    
Sbjct: 349 LSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNL 408

Query: 326 -DLDFLTLLTN------------CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDN 372
            +L   TL  N              ++E++YL  N+F G     I N + ++  I    N
Sbjct: 409 TNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCT-RLQEIDWYGN 467

Query: 373 QISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGN 432
           ++SG IPS I  L ++    +  N+L G IP ++G    +  + L  N L G+IP + G 
Sbjct: 468 RLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGF 527

Query: 433 LTLLNRLFLGFNN-LQGNVPSSLGNCQNLM-----------TLSRL--------LDLSGN 472
           LT L  LF+ +NN LQGN+P SL N +NL            ++S L         D++ N
Sbjct: 528 LTAL-ELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTEN 586

Query: 473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKT 532
              G IPLE+G   NL    L +N F+  IP T    + L  L +  NS SG +P+ L  
Sbjct: 587 GFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL 646

Query: 533 LKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK 577
            K +  +DL+ N LSG IP +L  L  L  L LS N F G +P +
Sbjct: 647 CKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTE 691

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  202 bits (514), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 217/459 (47%), Gaps = 62/459 (13%)

Query: 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN 220
           L KL+ + +  N   G+ P  +    ++  + +  N L G IP  L  L  L YL +  N
Sbjct: 307 LTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTN 366

Query: 221 NFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS 280
           N S ++PLSIW I SL+ + L+ N   G LP+++   +  +  L++ +N+FTG +P    
Sbjct: 367 NLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMT-ELKQLVSLALYENHFTGVIPQDLG 425

Query: 281 NASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQME 340
             S+L+VLD+ +N F+G +  +      L RL L  N L     SDL        CS +E
Sbjct: 426 ANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLG------GCSTLE 479

Query: 341 MLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG 400
            L L                          +N + G +P  ++   N+  F +  N  TG
Sbjct: 480 RLILE-------------------------ENNLRGGLPDFVEK-QNLLFFDLSGNNFTG 513

Query: 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNL 460
            IP ++G LKN+  + L  N L G+IP  LG+L  L  L L  N L+G +PS L NC  L
Sbjct: 514 PIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKL 573

Query: 461 MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTL-------------- 506
             L    D S NLL GSIP  +G+L  L +  L EN FS  IP +L              
Sbjct: 574 SEL----DASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIPTSLFQSNKLLNLQLGGN 629

Query: 507 ---------SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL 557
                     A   L  L+L  N  +G LP+ L  LK ++ELD+S NNLSG + + L  +
Sbjct: 630 LLAGDIPPVGALQALRSLNLSSNKLNGQLPIDLGKLKMLEELDVSHNNLSGTL-RVLSTI 688

Query: 558 LFLAYLNLSYNHFEGEVPRK-GVFGNRTGIHLIGNERLC 595
             L ++N+S+N F G VP     F N +     GN  LC
Sbjct: 689 QSLTFINISHNLFSGPVPPSLTKFLNSSPTSFSGNSDLC 727

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  202 bits (513), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 153/481 (31%), Positives = 233/481 (48%), Gaps = 71/481 (14%)

Query: 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN 220
           L +L +I  G N   G  P  I+   +L+ + ++ N+L G +P  L +L++L  L + +N
Sbjct: 186 LRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQN 245

Query: 221 NFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGF-----------------------N 257
             S ++P S+ NIS LE+++LH N F GS+P  IG                        N
Sbjct: 246 RLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGN 305

Query: 258 IPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN 317
           + +   +   +N  TG +P  F +  NL++L +++N   G +  +   L+ L +L LS N
Sbjct: 306 LIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSIN 365

Query: 318 NLGTESTSDLDFLTLLTNCS----QME--------------------------------- 340
            L      +L FL  L +      Q+E                                 
Sbjct: 366 RLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCR 425

Query: 341 -----MLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEY 395
                +L L +NK  G   R +    + +T + +GDNQ++G++P E+ NL N+ A  +  
Sbjct: 426 FQTLILLSLGSNKLSGNIPRDLKTCKS-LTKLMLGDNQLTGSLPIELFNLQNLTALELHQ 484

Query: 396 NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG 455
           N L+G I   +G+LKNL+ L L  N+  G IP  +GNLT +    +  N L G++P  LG
Sbjct: 485 NWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELG 544

Query: 456 NCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYL 515
           +C   +T+ R LDLSGN   G I  E+G L  L    LS+N  + EIP +    T L  L
Sbjct: 545 SC---VTIQR-LDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMEL 600

Query: 516 HLQGNSFSGSLPLSLKTLKSIK-ELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEV 574
            L GN  S ++P+ L  L S++  L++S NNLSG IP  L NL  L  L L+ N   GE+
Sbjct: 601 QLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEI 660

Query: 575 P 575
           P
Sbjct: 661 P 661

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
357484501	1006	Kinase-like protein [Medicago truncatula	0.743	0.464	0.457	1e-109
356529793	922	PREDICTED: probable LRR receptor-like se	0.746	0.508	0.434	1e-107
449441592	1023	PREDICTED: probable LRR receptor-like se	0.740	0.454	0.452	1e-104
449499190	1023	PREDICTED: LOW QUALITY PROTEIN: probable	0.740	0.454	0.452	1e-104
224115346	1017	predicted protein [Populus trichocarpa]	0.737	0.455	0.451	1e-104
359482058	1040	PREDICTED: probable LRR receptor-like se	0.700	0.423	0.448	1e-102
357497603	1027	CCP [Medicago truncatula] gi|355494105|g	0.743	0.454	0.441	1e-102
147853780	1904	hypothetical protein VITISV_030954 [Viti	0.700	0.231	0.445	1e-101
255577438	1028	receptor-kinase, putative [Ricinus commu	0.716	0.437	0.449	1e-101
357461167	1022	Kinase-like protein [Medicago truncatula	0.738	0.454	0.424	1e-100

>gi|357484501|ref|XP_003612538.1| Kinase-like protein [Medicago truncatula] gi|355513873|gb|AES95496.1| Kinase-like protein [Medicago truncatula]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/490 (45%), Positives = 304/490 (62%), Gaps = 23/490 (4%)

Query: 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN 220
           L KL++I+V  N L G FP FI N S+L  I ++ N L G IP  +C L+++  L + EN
Sbjct: 155 LKKLQLINVWGNNLTGGFPSFIGNLSSLIGIAVTYNNLKGEIPQEICNLKNIRRLHVGEN 214

Query: 221 NFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS 280
           N S   P  ++NISSL  +SL  N+F GSLP N+   +PN+N   +G+N F GS+P S  
Sbjct: 215 NLSGMFPSCLYNISSLTQLSLTENKFIGSLPSNLFNTLPNLNMFQIGKNQFFGSMPISIV 274

Query: 281 NASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQME 340
           NAS+LQ+LD+ +N+  GQV     +L +L  L L  N  G  ST DL+FL  LTNCS++E
Sbjct: 275 NASSLQLLDLAQNYLVGQVP-SLEKLQDLYWLNLEDNYFGNNSTIDLEFLKYLTNCSKLE 333

Query: 341 MLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG 400
           ++ +  NKFGG    SI +LS ++T + +G N ISG IP EI NLV +    +++N   G
Sbjct: 334 VVSICNNKFGGSLPNSIGSLSTQLTELCLGGNLISGKIPVEIGNLVELILLAIDFNHFEG 393

Query: 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNL 460
            IP + G+ + +Q LAL  N L G IP  +GNL+ L +L L  N  QGN+P S+ NCQ L
Sbjct: 394 IIPTSFGKFQKMQYLALSGNKLSGYIPPFIGNLSQLFKLDLYRNMFQGNIPPSIENCQKL 453

Query: 461 ---------------------MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499
                                 +LS LL+LS N L GS+P EVG L+N+   D+SENH S
Sbjct: 454 QYLDLSHNKLSGTIPSEIFHIFSLSNLLNLSHNFLSGSLPREVGLLKNIDWLDVSENHLS 513

Query: 500 NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559
            +IP T+  CT LEYLHLQGNSF+G++P SL +L+ ++ LDLSRN LSG IP  ++N+  
Sbjct: 514 GDIPTTIGDCTALEYLHLQGNSFNGTIPSSLASLEGLQHLDLSRNRLSGSIPDVMQNISV 573

Query: 560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHF-GRPRITRITL 618
           L YLN+S+N  EGEVP+ GVFGN T + LIGN +LCGG+  LHLP C   GR        
Sbjct: 574 LEYLNVSFNMLEGEVPKNGVFGNVTKVELIGNNKLCGGILLLHLPPCPIKGRKDTKHHKF 633

Query: 619 LKVVIPVAVI 628
           + V + V+V+
Sbjct: 634 MLVAVIVSVV 643

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529793|ref|XP_003533472.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/497 (43%), Positives = 308/497 (61%), Gaps = 28/497 (5%)

Query: 156 IQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYL 215
           I+ ++L KL+ + +  N+L G+ P FI N S+L  + +  N L G IP  +C+L+SL +L
Sbjct: 142 IEIVSLQKLQYLSISQNKLTGRIPSFIGNLSSLIVLGVGYNNLEGEIPQEICRLKSLKWL 201

Query: 216 SISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSL 275
           S   N  +   P  ++N+SSL +++   N+  G+LP N+   +PN+    +G N  +G +
Sbjct: 202 STGINKLTGTFPSCLYNMSSLTVLAATENQLNGTLPPNMFHTLPNLRVFEIGGNKISGPI 261

Query: 276 PHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTN 335
           P S +N S L +L++   HF GQV     +L NL  L LS NNLG  ST+DL+FL  LTN
Sbjct: 262 PPSITNTSILSILEI-GGHFRGQVP-SLGKLQNLQILNLSPNNLGNNSTNDLEFLNSLTN 319

Query: 336 CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEY 395
           CS++++L +  N FGG    S+ NLS +++ + +G NQISG IP+E+ NL+N+   G+E 
Sbjct: 320 CSKLQVLSIAHNNFGGQLPNSLGNLSTQLSELALGGNQISGKIPTELGNLINLVLLGLEQ 379

Query: 396 NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG 455
           +   G IP A G+ + LQ L L  N L G +P  LGNL+ L  L LG N L+GN+PSS+G
Sbjct: 380 SHFQGIIPSAFGKFQKLQLLELSANKLSGDLPAFLGNLSQLFHLGLGENKLEGNIPSSIG 439

Query: 456 NCQ---------------------NLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLS 494
           NCQ                     NL +L+++LDLS N L GSIP EV NL+N+   D+S
Sbjct: 440 NCQMLQYLYLRQNNLRGTIPLEIFNLSSLTQVLDLSQNSLSGSIPKEVNNLKNINLLDVS 499

Query: 495 ENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYL 554
           ENH S EIP T+  CT LEYL+LQGNS  G +P SL +LKS++ LDLSRN LSG IP  L
Sbjct: 500 ENHLSGEIPGTIRECTMLEYLYLQGNSLQGIIPSSLASLKSLQRLDLSRNRLSGSIPNVL 559

Query: 555 ENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRIT 614
           +N+ FL YLN+S+N  +GEVP +GVF N +G+ + GN +LCGG+ +LHLP C     ++ 
Sbjct: 560 QNMSFLEYLNVSFNMLDGEVPTEGVFQNASGLVVTGNSKLCGGISKLHLPPCPVKGKKLA 619

Query: 615 -----RITLLKVVIPVA 626
                +  L+ V++ V 
Sbjct: 620 KHHNHKFRLIAVIVSVV 636

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441592|ref|XP_004138566.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/488 (45%), Positives = 291/488 (59%), Gaps = 23/488 (4%)

Query: 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN 220
           L KLE+     N+L G+ P+   N S+L     + N   G IP S  QLR+L  L I  N
Sbjct: 175 LTKLEVFQCSSNELFGEIPETFGNLSSLRGFWGTLNNFHGNIPSSFGQLRNLTALVIGAN 234

Query: 221 NFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS 280
             S  +P SI+NISS+ I SL  N+ EG LP N+GF  PN+  L +  N F+G +P + S
Sbjct: 235 KLSGTIPSSIYNISSMRIFSLPVNQLEGGLPTNLGFIFPNLQILKIHTNQFSGPIPFTLS 294

Query: 281 NASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQME 340
           NAS L+   +  N FSG+V        +L    + +NNLG  +  DL+FL  L NC+ + 
Sbjct: 295 NASKLEEFVISNNMFSGKVP-SLASTRHLEVFGIDRNNLGYGNVDDLNFLFPLVNCTNLS 353

Query: 341 MLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG 400
            + ++ N FGG     I+N S K+ +IG G NQI GTIP+EI NL  + A G+E NQLTG
Sbjct: 354 SVVISDNNFGGALPEYISNFSTKLRIIGFGRNQIHGTIPTEIGNLFQLEALGLETNQLTG 413

Query: 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNL 460
           +IP + G+L  L  L L  N L GTIP +LGNL+ L R  L  NNL G +P SLG  Q+L
Sbjct: 414 SIPSSFGKLYKLNDLFLNMNKLSGTIPKSLGNLSALGRCNLRLNNLTGAIPPSLGESQSL 473

Query: 461 M---------------------TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499
           +                     +LS  LDLS N L GSIPLEVG L NL    +S+N  +
Sbjct: 474 LMLALSQNQLSGAIPKELLSISSLSIALDLSENYLTGSIPLEVGKLVNLGYLHISDNMLT 533

Query: 500 NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559
             IP TLSACT+LE L+L GN   G +P SL +L+ I+ELDLSRNNLSG+IP YL+    
Sbjct: 534 GVIPSTLSACTSLEDLYLDGNFLEGPIPESLSSLRGIEELDLSRNNLSGKIPTYLQEFEV 593

Query: 560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITL- 618
           L+YLNLS+N+ EGEVP +GVF N T   ++GN++LC G+ EL+LP C    PR  ++T  
Sbjct: 594 LSYLNLSFNNLEGEVPTQGVFKNTTAFSILGNKKLCNGINELNLPRCRLDYPRKQKLTTK 653

Query: 619 LKVVIPVA 626
           LK++I V 
Sbjct: 654 LKIIISVV 661

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499190|ref|XP_004160745.1| PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/488 (45%), Positives = 291/488 (59%), Gaps = 23/488 (4%)

Query: 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN 220
           L KLE+     N+L G+ P+   N S+L     + N   G IP S  QLR+L  L I  N
Sbjct: 175 LTKLEVFQCSSNELFGEIPETFGNLSSLRGFWGTLNNFHGNIPSSFGQLRNLTALVIGAN 234

Query: 221 NFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS 280
             S  +P SI+NISS+ I SL  N+ EG LP N+GF  PN+  L +  N F+G +P + S
Sbjct: 235 KLSGTIPSSIYNISSMRIFSLPVNQLEGGLPTNLGFIFPNLQILKIHTNQFSGPIPFTLS 294

Query: 281 NASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQME 340
           NAS L+   +  N FSG+V        +L    + +NNLG  +  DL+FL  L NC+ + 
Sbjct: 295 NASKLEEFVISNNMFSGKVP-SLASTRHLEVFGIDRNNLGYGNVDDLNFLFPLVNCTNLS 353

Query: 341 MLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG 400
            + ++ N FGG     I+N S K+ +IG G NQI GTIP+EI NL  + A G+E NQLTG
Sbjct: 354 SVVISDNNFGGALPEYISNFSTKLRIIGFGRNQIHGTIPTEIGNLFQLEALGLETNQLTG 413

Query: 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNL 460
           +IP + G+L  L  L L  N L GTIP +LGNL+ L R  L  NNL G +P SLG  Q+L
Sbjct: 414 SIPSSFGKLYKLNDLFLNMNKLSGTIPKSLGNLSALGRCNLRLNNLTGAIPPSLGESQSL 473

Query: 461 M---------------------TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499
           +                     +LS  LDLS N L GSIPLEVG L NL    +S+N  +
Sbjct: 474 LMLALSQNQLSGAIPKELLSISSLSIALDLSENYLTGSIPLEVGKLVNLGYLHISDNMLT 533

Query: 500 NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559
             IP TLSACT+LE L+L GN   G +P SL +L+ I+ELDLSRNNLSG+IP YL+    
Sbjct: 534 GVIPSTLSACTSLEDLYLDGNFLEGPIPESLSSLRGIEELDLSRNNLSGKIPTYLQEFEV 593

Query: 560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITL- 618
           L+YLNLS+N+ EGEVP +GVF N T   ++GN++LC G+ EL+LP C    PR  ++T  
Sbjct: 594 LSYLNLSFNNLEGEVPTQGVFKNTTAFSILGNKKLCNGINELNLPRCRLDYPRKQKLTTK 653

Query: 619 LKVVIPVA 626
           LK++I V 
Sbjct: 654 LKIIISVV 661

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/487 (45%), Positives = 315/487 (64%), Gaps = 24/487 (4%)

Query: 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSIS 218
           ++L KLE + +  N L G  P FI N ++L +I  +AN   GRIPD+L QL++L  L + 
Sbjct: 173 VSLSKLEKLVIHKNNLSGAIPPFIGNLTSLNSISAAANNFQGRIPDTLGQLKNLESLGLG 232

Query: 219 ENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
            N  S  +PL I+N+S+L I+SL  N+ +G LP +IG ++PN+ ++ +  N F+GS+P S
Sbjct: 233 TNFLSGTIPLPIYNLSTLSILSLSENQLQGYLPSDIGVSLPNLQYIQIRANQFSGSIPLS 292

Query: 279 FSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQ 338
            SN+SNLQVL+   N FSG++ ++F  L +L+ + LS N +G+    +L FL  L NC+ 
Sbjct: 293 ISNSSNLQVLEAGDNSFSGKLSVNFGGLKHLAVVSLSFNKMGSGEPGELSFLDSLINCTS 352

Query: 339 MEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL 398
           +  + +  N F G+   S+ NLS  +T +G+G NQ+ G I S I NL+N+N  G+E+NQL
Sbjct: 353 LYAIDIVGNHFEGMLPNSLGNLSTGLTFLGLGQNQLFGGIHSGIGNLINLNTLGLEFNQL 412

Query: 399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQ 458
           +G IP  IG+L+ LQ  +L  N L G IP ++GNLTLL    L  N LQG +PSS+GNCQ
Sbjct: 413 SGPIPLDIGKLRMLQRFSLSYNRLSGHIPSSIGNLTLLLEFDLQGNQLQGTIPSSIGNCQ 472

Query: 459 N--LMTLSRLLDLSG--------------------NLLGGSIPLEVGNLRNLAEFDLSEN 496
              L+ LSR  +LSG                    N   GS+P E+G+L++LA+ ++S N
Sbjct: 473 KLLLLHLSR-NNLSGNAPKELFAISSLSVSLDLSQNYFNGSLPSEIGSLKSLAKLNVSYN 531

Query: 497 HFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLEN 556
            FS EIP TL++CT+LEYL++Q N F GS+P S  TL+ I++LDLS NNLSGQIPK+L+ 
Sbjct: 532 EFSGEIPSTLASCTSLEYLYMQHNFFQGSIPSSFSTLRGIQKLDLSHNNLSGQIPKFLDT 591

Query: 557 LLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRI 616
              L  LNLS+N FEGEVP KG FGN T I + GN++LCGG+ EL LP C+F + +  +I
Sbjct: 592 FALLT-LNLSFNDFEGEVPTKGAFGNATAISVDGNKKLCGGISELKLPKCNFKKSKKWKI 650

Query: 617 TLLKVVI 623
            L  +++
Sbjct: 651 PLWLILL 657

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/462 (44%), Positives = 294/462 (63%), Gaps = 22/462 (4%)

Query: 172 NQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIW 231
           N L G  PD + N ++++++  + N L G IP +L QL++L ++ +  N FS  +P S++
Sbjct: 187 NNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQALGQLQTLEFMGLGMNGFSGIIPSSVY 246

Query: 232 NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVY 291
           N+SSLE+ SL  N+  GSLP ++ F +PN+  L++G N+FTGSLP S SNASNL   D+ 
Sbjct: 247 NMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNIGNNDFTGSLPSSLSNASNLLEFDIT 306

Query: 292 KNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGG 351
            ++F+G+V IDF  + NL  LFL+ N LG     DL FL  L  C  +++L L+ ++FGG
Sbjct: 307 MSNFTGKVSIDFGGMPNLWGLFLASNPLGKGEADDLSFLNSLMKCRALKVLDLSGSQFGG 366

Query: 352 VFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKN 411
           V   SIANLS ++  + + +NQ+SGTIP  I NLVN+    +  N  TG+IP  IG L+ 
Sbjct: 367 VLPNSIANLSTQLMKLKLDNNQLSGTIPPGIGNLVNLTDLILANNDFTGSIPVLIGNLQM 426

Query: 412 LQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGN--------------- 456
           L  + L RN L G IP +LGN+T L  L L  N+L G +PSS GN               
Sbjct: 427 LGRIDLSRNQLSGHIPSSLGNITRLYSLHLQNNHLSGKIPSSFGNLLYLQELDLSYNSLN 486

Query: 457 ------CQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT 510
                   +L++L+  L+L+ N L G +P EV  L+NL   D+SEN  S EIP  L +C 
Sbjct: 487 GTIPEKVMDLVSLTISLNLARNQLTGLLPSEVRKLKNLGHLDVSENKLSGEIPDGLGSCL 546

Query: 511 TLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHF 570
           TLE+LH++GN F GS+P S  +L+ + +LDLSRNNLSGQIP++L+  L L+ LNLS+N+F
Sbjct: 547 TLEHLHMEGNFFKGSIPPSFISLRGLLDLDLSRNNLSGQIPEFLQQ-LSLSNLNLSFNNF 605

Query: 571 EGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPR 612
           EG++P KGVF N T   + GN +LCGG+ ELHLP+C   +P+
Sbjct: 606 EGQLPTKGVFNNATSTSVAGNNKLCGGIPELHLPACPVTKPK 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497603|ref|XP_003619090.1| CCP [Medicago truncatula] gi|355494105|gb|AES75308.1| CCP [Medicago truncatula]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/491 (44%), Positives = 293/491 (59%), Gaps = 24/491 (4%)

Query: 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN 220
           L KL+ I VG+N L    P FI N S L  +++  N   G+IP  +C L+ L  L +SEN
Sbjct: 179 LKKLQAISVGNNHLTEGIPSFIGNLSCLTRLNLGENNFSGKIPQEICFLKHLTILGVSEN 238

Query: 221 NFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS 280
           N S K+P  ++NISSL  +++  N   GS P N+   +PN+   +   N F+G +P S +
Sbjct: 239 NLSGKIPSCLYNISSLISLTVTQNHLHGSFPPNMFHTLPNIQIFAFAANQFSGPIPTSIA 298

Query: 281 NASNLQVLDVYKN-HFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
           NAS LQ+LD+  N +  GQV      L +LS L L  NNLG  ST DL+FL  LTNCS++
Sbjct: 299 NASALQILDLGNNMNLVGQVP-SLRNLQDLSFLSLEVNNLGNNSTMDLEFLKYLTNCSKL 357

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
            +L ++ N FGG    SI NLS ++  + MG N ISG IP+E+  LV +    +E N   
Sbjct: 358 YVLSISYNNFGGHLPNSIGNLSTELPELYMGGNMISGKIPAELGRLVGLILLTMESNCFE 417

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQN 459
           G IP   G+ + +Q L+L  N L G IP  +GNL+ L  L L  N  QG++P S+GNCQN
Sbjct: 418 GIIPTNFGKFQKMQVLSLRENKLSGGIPPFIGNLSQLYYLELNHNMFQGSIPPSIGNCQN 477

Query: 460 L---------------------MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHF 498
           L                      +LS LL+LS N L GS+P EVG L+N+   D+SENH 
Sbjct: 478 LQSLDLSHNKLRGTIPVEVLNLFSLSILLNLSHNSLSGSLPREVGMLKNIEALDVSENHL 537

Query: 499 SNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558
           S +IP  +  CT+LEY+HLQ NSF+G++P SL  LK ++ LDLSRN LSG IP  ++N+ 
Sbjct: 538 SGDIPREIGECTSLEYIHLQRNSFNGTIPSSLTFLKGLRYLDLSRNQLSGSIPDGMQNIS 597

Query: 559 FLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHF-GRPRITRIT 617
            L YLN+S+N  EGEVP  GVFGN T I LIGN++LCGG+  LHLP C   GR    +  
Sbjct: 598 VLEYLNVSFNMLEGEVPTNGVFGNATQIDLIGNKKLCGGISHLHLPPCPIKGRKHAKQHK 657

Query: 618 LLKVVIPVAVI 628
              + + V+V+
Sbjct: 658 FRLIAVLVSVV 668

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/462 (44%), Positives = 293/462 (63%), Gaps = 22/462 (4%)

Query: 172 NQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIW 231
           N L G  PD + N ++++++  + N L G IP +L QL++L ++ +  N FS  +P S++
Sbjct: 218 NNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQALGQLQTLEFMGLGMNGFSGIIPSSVY 277

Query: 232 NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVY 291
           N+SSLE+ SL  N+  GSLP ++ F +PN+  L++G N+FTG LP S SNASNL   D+ 
Sbjct: 278 NMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNIGNNDFTGPLPSSLSNASNLLEFDIT 337

Query: 292 KNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGG 351
            ++F+G+V IDF  + NL  LFL+ N LG     DL FL  L  C  +++L L+ ++FGG
Sbjct: 338 MSNFTGKVSIDFGGMPNLWGLFLASNPLGKGEADDLSFLNSLMKCRALKVLDLSGSQFGG 397

Query: 352 VFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKN 411
           V   SIANLS ++  + + +NQ+SGTIP  I NLVN+    +  N  TG+IP  IG L+ 
Sbjct: 398 VLPNSIANLSTQLMKLKLDNNQLSGTIPPGIGNLVNLTDLILANNDFTGSIPVLIGNLQM 457

Query: 412 LQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGN--------------- 456
           L  + L RN L G IP +LGN+T L  L L  N+L G +PSS GN               
Sbjct: 458 LGRIDLSRNQLSGHIPSSLGNITRLYSLHLQNNHLSGKIPSSFGNLLYLQELDLSYNSLN 517

Query: 457 ------CQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT 510
                   +L++L+  L+L+ N L G +P EV  L+NL   D+SEN  S EIP  L +C 
Sbjct: 518 GTIPEKVMDLVSLTISLNLARNQLTGLLPSEVRKLKNLGHLDVSENKLSGEIPDGLGSCL 577

Query: 511 TLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHF 570
           TLE+LH++GN F GS+P S  +L+ + +LDLSRNNLSGQIP++L+  L L+ LNLS+N+F
Sbjct: 578 TLEHLHMEGNFFKGSIPPSFISLRGLLDLDLSRNNLSGQIPEFLQQ-LSLSNLNLSFNNF 636

Query: 571 EGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPR 612
           EG++P KGVF N T   + GN +LCGG+ ELHLP+C   +P+
Sbjct: 637 EGQLPTKGVFNNATSTSVAGNNKLCGGIPELHLPACPVTKPK 678

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/472 (44%), Positives = 298/472 (63%), Gaps = 22/472 (4%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           +L KL+M +   N L G+     +N S+LE I  + N   G IP+S+ QL+SL   S+  
Sbjct: 170 SLSKLQMFEFEINYLTGEISPSFSNLSSLEIIYGTRNNFHGEIPNSIGQLKSLQTFSLGG 229

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           +NFS  +P SI+N+SSL I+S+  N+  G+LP ++G ++P +  L +  N F+GS+P + 
Sbjct: 230 SNFSGVIPPSIFNLSSLTILSVPINQLHGNLPPDLGQSLPKLEVLRLYANKFSGSIPPTI 289

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
           SNASNL  LDV +N+F+G+V     RL NLS + + KNNLG     DL FL  L N + +
Sbjct: 290 SNASNLVALDVSQNNFTGKVP-SLARLHNLSYIGIHKNNLGNGEDDDLSFLYTLANNTNL 348

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
           E+L +  N  GGV    ++N S K+  +  G N+I G IPSEI NL+ + A G E N+LT
Sbjct: 349 EILAITENNLGGVLPEMLSNFSTKLVHMAFGRNKIRGRIPSEIDNLIRLEALGFERNELT 408

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQN 459
           G+IP ++G+LKNL  L L  N++ G+IP +LGN+T L+ + L  NNL+G++PSSLGNCQ 
Sbjct: 409 GSIPSSLGKLKNLIKLYLNDNNISGSIPSSLGNITSLSTISLKVNNLEGSIPSSLGNCQQ 468

Query: 460 --LMTLSR-------------------LLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHF 498
             LM LSR                    LDLS N   GS+P+EVG L NL   D+S+N  
Sbjct: 469 MLLMDLSRNNLSGTIPKELISIPSLSISLDLSENQFTGSLPMEVGGLVNLGYLDVSKNKL 528

Query: 499 SNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558
           S EIP +L +CT LE L+LQGN+F G++P+SL +L+ I +L+LS NNL+GQIP +     
Sbjct: 529 SGEIPKSLGSCTRLETLYLQGNAFQGTIPVSLSSLRGINDLNLSHNNLTGQIPNFFAEFK 588

Query: 559 FLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGR 610
            L  L+LSYN FEGEVP +GVF N +   + GN+ LCGG+ E++LP C   +
Sbjct: 589 SLEKLDLSYNDFEGEVPAEGVFKNASAFSISGNKNLCGGIPEINLPRCTLNK 640

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461167|ref|XP_003600865.1| Kinase-like protein [Medicago truncatula] gi|355489913|gb|AES71116.1| Kinase-like protein [Medicago truncatula]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/490 (42%), Positives = 306/490 (62%), Gaps = 26/490 (5%)

Query: 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN 220
           L KL+ +++ +N L  + P  I N ++L  +++ +N L G IP  +C L++L  +S+  N
Sbjct: 171 LRKLQRVNIWNNNLTAEIPPSIENLTSLINLNLGSNNLEGNIPPEICHLKNLATISVGIN 230

Query: 221 NFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS 280
            FS  LPL ++N+SSL ++++  N+F GSLP  +   +PN+  L +G N F+G +P S S
Sbjct: 231 KFSGNLPLCLYNMSSLTLLAVDLNKFNGSLPQKMFHTLPNLKTLFIGGNQFSGPIPTSIS 290

Query: 281 NASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQME 340
           NASNL+  D+ +N F+GQV  +  +L +L  + LS+NNLG+ ST DL+F+  L NCS++ 
Sbjct: 291 NASNLRSFDITQNRFTGQVP-NLGKLKDLQLIGLSQNNLGSNSTKDLEFIKSLVNCSKLY 349

Query: 341 MLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG 400
           ++ ++ N FGG    S+ N+S  +  + +G N I G IP+E+ NL N+    VE N+  G
Sbjct: 350 VVDISYNNFGGPLPNSLGNMS-NLNNLYLGGNHILGKIPAELGNLANLYLLTVENNRFEG 408

Query: 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQ-- 458
            IP   G+ + LQ L L  N L G IP  +GNL+ L  L LG N L+GN+P S+GNCQ  
Sbjct: 409 IIPDTFGKFQKLQVLELSGNRLSGNIPAFIGNLSQLFYLGLGDNILEGNIPLSIGNCQKL 468

Query: 459 -------------------NLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499
                              +L +L+RLLDLSGNLL GS+  EVG L N+ + + SEN+ S
Sbjct: 469 YHLDLSQNNLRGTIPIEVFSLFSLTRLLDLSGNLLSGSLLQEVGRLENIGKLNFSENNLS 528

Query: 500 NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559
            +IP T+  C +LEYL+LQGNSF G +P SL +LK ++ LDLSRN+LSG IPK L+N+ F
Sbjct: 529 GDIPRTIGECVSLEYLYLQGNSFHGVIPTSLASLKGLQHLDLSRNHLSGSIPKGLQNISF 588

Query: 560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITR---I 616
           L Y N+S+N  EGEVP +GVF N + + + GN  LCGG+ +LHLP C     + ++    
Sbjct: 589 LQYFNVSFNMLEGEVPTEGVFQNSSEVAVTGNNNLCGGVSKLHLPPCPLKGEKHSKHRDF 648

Query: 617 TLLKVVIPVA 626
            L+ V++ V 
Sbjct: 649 KLIAVIVSVV 658

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.703	0.431	0.316	1.3e-53
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.617	0.376	0.316	2.6e-52
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.656	0.506	0.294	8.7e-50
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.640	0.398	0.314	4.1e-49
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.652	0.4	0.307	5.6e-49
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.734	0.456	0.287	2.8e-47
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.668	0.369	0.264	7.5e-46
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.732	0.454	0.270	8.5e-45
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.603	0.323	0.313	1.9e-43
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.617	0.395	0.299	2.3e-42

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 563 (203.2 bits), Expect = 1.3e-53, P = 1.3e-53
 Identities = 142/449 (31%), Positives = 201/449 (44%)

Query:   160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
             NL  L+  D+  N+L G  P  +   S+L  +++  N L G IP+S+  L SL   S+ E
Sbjct:   198 NLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRE 257

Query:   220 NNFSCKLPLSIWN-ISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
             N     +P + +  +  LE+I + +NRF G +P ++  N  ++  + +  N F+G +   
Sbjct:   258 NKLGGMIPTNAFKTLHLLEVIDMGTNRFHGKIPASVA-NASHLTVIQIYGNLFSGIITSG 316

Query:   279 FSNASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXNCS- 337
             F    NL  L +++N F  + + D                                N S 
Sbjct:   317 FGRLRNLTELYLWRNLFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLST 376

Query:   338 QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ 397
              +  L L  NK  G   + I NL   +  + + +N   G++PS +  L N+       N 
Sbjct:   377 SLSFLALELNKITGSIPKDIGNLIG-LQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENN 435

Query:   398 LTGTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXXXXXXXXXXXQGNVPSSLGNC 457
             L+G+IP AIG L  L  L L  N   G IP                    G +PS L N 
Sbjct:   436 LSGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNI 495

Query:   458 QNLMTXXXXXXXXXXXXXXXIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHL 517
             Q L                 IP E+G+L+NL EF    N  S +IP TL  C  L YL+L
Sbjct:   496 QTL---SIMINVSKNNLEGSIPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYL 552

Query:   518 QGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKXXXXXXXXXXXXXXXXHFEGEVPRK 577
             Q N  SGS+P +L  LK ++ LDLS NNLSGQIP                  F GEVP  
Sbjct:   553 QNNLLSGSIPSALGQLKGLETLDLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTI 612

Query:   578 GVFGNRTGIHLIGNERLCGGLEELHLPSC 606
             G F   +GI + GN +LCGG+ +LHLP C
Sbjct:   613 GAFAAASGISIQGNAKLCGGIPDLHLPRC 641

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 2.6e-52, P = 2.6e-52
 Identities = 124/392 (31%), Positives = 194/392 (49%)

Query:   160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
             +L KL ++D+  N L G FP  + N ++L+ +D + N + G IPD + +L  + +  I+ 
Sbjct:   167 SLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIAL 226

Query:   220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
             N+FS   P +++NISSLE +SL  N F G+L  + G+ +PN+  L +G N FTG++P + 
Sbjct:   227 NSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTL 286

Query:   280 SNASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXNCSQM 339
             +N S+L+  D+  N+ SG + +                  G              NC+Q+
Sbjct:   287 ANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQL 346

Query:   340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
             E L +  N+ GG    SIANLS  +T + +G N ISGTIP +I NLV++    +E N L+
Sbjct:   347 EYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLS 406

Query:   400 GTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXXXXXXXXXXXQGNVPSSLGNCQN 459
             G +P + G+L NLQ + L  N++ G IP                    G +P SLG C+ 
Sbjct:   407 GELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRY 466

Query:   460 LMTXXXXXXXXXXXXXXXIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQG 519
             L+                IP E+  + +LA  DLS N  +   P  +     L  L    
Sbjct:   467 LLDLWMDTNRLNGT----IPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASY 522

Query:   520 NSFSGSLPLSLKTLKSIKELDLSRNNLSGQIP 551
             N  SG +P ++    S++ L +  N+  G IP
Sbjct:   523 NKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIP 554

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 523 (189.2 bits), Expect = 8.7e-50, P = 8.7e-50
 Identities = 123/417 (29%), Positives = 195/417 (46%)

Query:   160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
             NL  L ++++ +N L G  P  +   + L  + ++ N L G IP S  QLR L++LS++ 
Sbjct:   148 NLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAF 207

Query:   220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
             NN S  +P  IWNISSL I  + SN+  G+LP N   N+P++  + +  N F G +P S 
Sbjct:   208 NNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASI 267

Query:   280 SNASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXNCSQM 339
              NASN+ +  +  N FSG V  +                                NCS +
Sbjct:   268 GNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALTNCSNL 327

Query:   340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
             + + L   KFGGV   S++NLS+ +  + + DN+ISG++P +I NLVN+    +  N LT
Sbjct:   328 QEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLANNSLT 387

Query:   400 GTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXXXXXXXXXXXQGNVPSSLGNCQN 459
             G++P +  +LKNL+ L +  N L G++P                    G +PS+LGN   
Sbjct:   388 GSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTLGN--- 444

Query:   460 LMTXXXXXXXXXXXXXXXIPLEVGNLRNLAEF-DLSENHFSNEIPVTLSACTTLEYLHLQ 518
              +T               IP+E+ ++  L+E  D+S N+    IP  +     +   H  
Sbjct:   445 -LTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKLKNIVEFHAD 503

Query:   519 GNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKXXXXXXXXXXXXXXXXHFEGEVP 575
              N  SG  P ++   + ++ L L  N L+G IP                 +  G++P
Sbjct:   504 SNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQIP 560

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 129/410 (31%), Positives = 201/410 (49%)

Query:   145 NDKLEAGNLG--LIQRL-NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGR 201
             N +L++  LG  +   L +L  L  +++  N + GK P  + N + LE + +S N L G 
Sbjct:   142 NLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGE 201

Query:   202 IPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNV 261
             IP  + QL  +  L +  NNFS   P +++N+SSL+++ +  N F G L  ++G  +PN+
Sbjct:   202 IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNL 261

Query:   262 NFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXXXXGX 321
                ++G N FTGS+P + SN S L+ L + +N+ +G +                    G 
Sbjct:   262 LSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKLLFLHTNSLGS 320

Query:   322 XXXXXXXXXXXXXNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSE 381
                          NC+Q+E L +  N+ GG    SIANLSAK+  + +G   ISG+IP +
Sbjct:   321 DSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYD 380

Query:   382 IKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXXXXXX 441
             I NL+N+    ++ N L+G +P ++G+L NL+ L+L  N L G IP              
Sbjct:   381 IGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDL 440

Query:   442 XXXXXQGNVPSSLGNCQNLMTXXXXXXXXXXXXXXXIPLEVGNLRNLAEFDLSENHFSNE 501
                  +G VP+SLGNC +L+                IPLE+  ++ L   D+S N     
Sbjct:   441 SNNGFEGIVPTSLGNCSHLLELWIGDNKLNGT----IPLEIMKIQQLLRLDMSGNSLIGS 496

Query:   502 IPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIP 551
             +P  + A   L  L L  N  SG LP +L    +++ L L  N   G IP
Sbjct:   497 LPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIP 546

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.6e-49, P = 5.6e-49
 Identities = 128/416 (30%), Positives = 203/416 (48%)

Query:   136 SSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISA 195
             SS   +  S++ LE G    ++  +L KL ++ +G N L GKFP  + N ++L+ +D   
Sbjct:   153 SSLSTLDLSSNHLEQGVP--LEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIY 210

Query:   196 NMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIG 255
             N + G IP  + +L+ + +  I+ N F+   P  I+N+SSL  +S+  N F G+L  + G
Sbjct:   211 NQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFG 270

Query:   256 FNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXX 315
               +PN+  L +G N+FTG++P + SN S+L+ LD+  NH +G++ +              
Sbjct:   271 SLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLN 330

Query:   316 XXXXGXXXXXXXXXXXXXXNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQIS 375
                 G              NCSQ++ L +  NK GG     IANLS ++T + +G N IS
Sbjct:   331 NNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLIS 390

Query:   376 GTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXX 435
             G+IP  I NLV++    +  N LTG +P ++GEL  L+ + L  N L G IP        
Sbjct:   391 GSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISG 450

Query:   436 XXXXXXXXXXXQGNVPSSLGNCQNLMTXXXXXXXXXXXXXXXIPLEVGNLRNLAEFDLSE 495
                        +G++PSSLG+C  L+                IP E+  L +L   ++S 
Sbjct:   451 LTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGS----IPHELMELPSLVVLNVSF 506

Query:   496 NHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIP 551
             N     +   +     L  L +  N  SG +P +L    S++ L L  N+  G IP
Sbjct:   507 NLLVGPLRQDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIP 562

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.8e-47, P = 2.8e-47
 Identities = 136/473 (28%), Positives = 209/473 (44%)

Query:   160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
             NL  L ++++G N L G+ PD IA  S + ++ ++ N   G  P +   L SL  L +  
Sbjct:   184 NLTSLIVLNLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLG 243

Query:   220 NNFSCKLPLSIWNI-SSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
             N FS  L     N+  ++  +SLH N   G++P  +  NI  +    +G+N  TGS+  +
Sbjct:   244 NGFSGNLKPDFGNLLPNIHELSLHGNFLTGAIPTTLA-NISTLEMFGIGKNRMTGSISPN 302

Query:   279 FSNASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXNCS- 337
             F    NL  L++  N        D                                N S 
Sbjct:   303 FGKLENLHYLELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMST 362

Query:   338 QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ 397
             ++ +L L  N   G     I NL    +++ + DN ++G +P+ + NLV +    +  N+
Sbjct:   363 ELTVLNLKGNLIYGSIPHDIGNLIGLQSLL-LADNLLTGPLPTSLGNLVGLGELILFSNR 421

Query:   398 LTGTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXXXXXXXXXXXQGNVPSSLGNC 457
              +G IP  IG L  L  L L  NS  G +P                    G +P  +   
Sbjct:   422 FSGEIPSFIGNLTQLVKLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQI 481

Query:   458 QNLMTXXXXXXXXXXXXXXXIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHL 517
               L+                +P ++G L+NL E  L  N+ S  +P TL  C ++E ++L
Sbjct:   482 PTLV----HLNMESNSLSGSLPNDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSMEVIYL 537

Query:   518 QGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKXXXXXXXXXXXXXXXXHFEGEVPRK 577
             Q N F G++P  +K L  +K +DLS NNLSG I +                +FEG VP +
Sbjct:   538 QENHFDGTIP-DIKGLMGVKNVDLSNNNLSGSISEYFENFSKLEYLNLSDNNFEGRVPTE 596

Query:   578 GVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRI-TRI-TLLK-VVIPVAV 627
             G+F N T + + GN+ LCG ++EL L  C    P + TR  +LLK V I V+V
Sbjct:   597 GIFQNATLVSVFGNKNLCGSIKELKLKPCIAQAPPVETRHPSLLKKVAIGVSV 649

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 7.5e-46, Sum P(2) = 7.5e-46
 Identities = 115/435 (26%), Positives = 198/435 (45%)

Query:   164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
             L+++D+ +N++ G+FP ++ N  +L+ +D+S N+  G IP  +  L+ L  L ++ N+ +
Sbjct:   310 LQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLT 369

Query:   224 CKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNAS 283
              ++P+ I    SL+++    N  +G +P  +G+ +  +  LS+G+N+F+G +P S  N  
Sbjct:   370 GEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGY-MKALKVLSLGRNSFSGYVPSSMVNLQ 428

Query:   284 NLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXNCSQMEMLY 343
              L+ L++ +N+ +G   ++                                N S +  L 
Sbjct:   429 QLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSIS------NLSNLSFLN 482

Query:   344 LNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIP 403
             L+ N F G    S+ NL  K+T + +    +SG +P E+  L N+    ++ N  +G +P
Sbjct:   483 LSGNGFSGEIPASVGNLF-KLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVP 541

Query:   404 HAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXXXXXXXXXXXQGNVPSSLGNCQNLMTX 463
                  L +L+ + L  NS  G IP                    G++P  +GNC  L   
Sbjct:   542 EGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVL 601

Query:   464 XXXXXXXXXXXXXXIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFS 523
                           IP ++  L  L   DL +N+ S EIP  +S  ++L  L L  N  S
Sbjct:   602 ELRSNRLMGH----IPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLS 657

Query:   524 GSLPLSLKTLKSIKELDLSRNNLSGQIPKXXXXXXXXXXXXXXXXH-FEGEVPRK-GVFG 581
             G +P S   L ++ ++DLS NNL+G+IP                 +  +GE+P   G   
Sbjct:   658 GVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRI 717

Query:   582 NRTGIHLIGNERLCG 596
             N T     GN  LCG
Sbjct:   718 NNTS-EFSGNTELCG 731

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 8.5e-45, P = 8.5e-45
 Identities = 128/474 (27%), Positives = 210/474 (44%)

Query:   160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
             NL  L+ +   DN + G+ PD +A  S +  + +S N   G  P ++  L +L  L +  
Sbjct:   184 NLTSLKSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFG 243

Query:   220 NNFSCKLPLSIWNI-SSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
             + FS  L     N+  ++  ++L  N   G++P  +  NI  +    + +N  TG +  +
Sbjct:   244 SGFSGSLKPDFGNLLPNIRELNLGENDLVGAIPTTLS-NISTLQKFGINKNMMTGGIYPN 302

Query:   279 FSNASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXNCSQ 338
             F    +LQ LD+ +N        D                                N S 
Sbjct:   303 FGKVPSLQYLDLSENPLGSYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMST 362

Query:   339 MEMLYLNT--NKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYN 396
              E++ LN   N F G   + I NL   +  + +G N ++G +P+ +  L+ +    +  N
Sbjct:   363 -ELISLNLIGNHFFGSIPQDIGNLIG-LQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSN 420

Query:   397 QLTGTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXXXXXXXXXXXQGNVPSSLGN 456
             +++G IP  IG L  L+ L L  NS  G +P                    G +P  +  
Sbjct:   421 RMSGEIPSFIGNLTQLEILYLSNNSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQ 480

Query:   457 CQNLMTXXXXXXXXXXXXXXXIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLH 516
                L+                +P ++G+L+NL +  L  N FS  +P TL  C  +E L 
Sbjct:   481 IPTLVNLSMEGNSLSGS----LPNDIGSLQNLVKLSLENNKFSGHLPQTLGNCLAMEQLF 536

Query:   517 LQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKXXXXXXXXXXXXXXXXHFEGEVPR 576
             LQGNSF G++P +++ L  ++ +DLS N+LSG IP+                +F G+VP 
Sbjct:   537 LQGNSFDGAIP-NIRGLMGVRRVDLSNNDLSGSIPEYFANFSKLEYLNLSINNFTGKVPS 595

Query:   577 KGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRI-TRIT--LLKVVIPVAV 627
             KG F N T + + GN+ LCGG+++L L  C    P + T+ +  L KV I V++
Sbjct:   596 KGNFQNSTIVFVFGNKNLCGGIKDLKLKPCLAQEPPVETKHSSHLKKVAILVSI 649

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.9e-43, P = 1.9e-43
 Identities = 123/392 (31%), Positives = 184/392 (46%)

Query:   160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
             NLL L+ + + +N L G  P  I N S+L  +++  N L G+IP  L  L  L  L I +
Sbjct:   238 NLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYK 297

Query:   220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
             N  +  +P S++ ++ L  + L  N   G +   IGF + ++  L++  NNFTG  P S 
Sbjct:   298 NKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGF-LESLEVLTLHSNNFTGEFPQSI 356

Query:   280 SNASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXNCSQM 339
             +N  NL VL V  N+ SG++  D                                NC+ +
Sbjct:   357 TNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLL------TGPIPSSISNCTGL 410

Query:   340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
             ++L L+ N+  G   R    ++  +T I +G N  +G IP +I N  N+    V  N LT
Sbjct:   411 KLLDLSHNQMTGEIPRGFGRMN--LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLT 468

Query:   400 GTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXXXXXXXXXXXQGNVPSSLGNCQN 459
             GT+   IG+L+ L+ L +  NSL G IP                    G +P  + N   
Sbjct:   469 GTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSN--- 525

Query:   460 LMTXXXXXXXXXXXXXXXIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQG 519
              +T               IP E+ +++ L+  DLS N FS +IP   S   +L YL LQG
Sbjct:   526 -LTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQG 584

Query:   520 NSFSGSLPLSLKTLKSIKELDLSRNNLSGQIP 551
             N F+GS+P SLK+L  +   D+S N L+G IP
Sbjct:   585 NKFNGSIPASLKSLSLLNTFDISDNLLTGTIP 616

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.3e-42, P = 2.3e-42
 Identities = 120/401 (29%), Positives = 182/401 (45%)

Query:   160 NLLKLEMIDVGDNQLIGKFPDFIANF-SALEAIDISANMLGGRIPDSLCQLRSLNYLSIS 218
             NL  L ++D+  N  +GK P  I +    L+ + +S N+L G IP  L  L  L YL + 
Sbjct:    88 NLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIPQELGLLNRLVYLDLG 147

Query:   219 ENNFSCKLPLSIW---NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSL 275
              N  +  +P+ ++   + SSL+ I L +N   G +PLN   ++  + FL +  N  TG++
Sbjct:   148 SNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTV 207

Query:   276 PHSFSNASNLQVLDVYKNHFSGQVK---IDXXXXXXXXXXXXXXXXXGXXXXXXXXXXXX 332
             P S SN++NL+ +D+  N  SG++    I                               
Sbjct:   208 PSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFAS 267

Query:   333 XXNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFG 392
               N S ++ L L  N  GG    S+ +LS  +  I +  N+I G+IP EI NL+N+    
Sbjct:   268 LANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEISNLLNLTLLN 327

Query:   393 VEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXXXXXXXXXXXQGNVPS 452
             +  N L+G IP  + +L  L+ + L  N L G IP                    G++P 
Sbjct:   328 LSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPD 387

Query:   453 SLGNCQNLMTXXXXXXXXXXXXXXXIPLEVGNLRNLAEFDLSENHFSNEIPV-TLSACTT 511
             S GN   L                 +P  +G   NL   DLS N+ +  IPV  +S    
Sbjct:   388 SFGNLSQLRRLLLYGNHLSGT----VPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRN 443

Query:   512 LE-YLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIP 551
             L+ YL+L  N  SG +PL L  +  +  +DLS N LSG+IP
Sbjct:   444 LKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIP 484

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	628
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-59
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-58
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-57
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-50
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-43
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-30
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	6e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-13
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	9e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-10
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	5e-10
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-10
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-09
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-09
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-09
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	8e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	5e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-07
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	3e-07
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-07
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	5e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	9e-07
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-06
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	3e-06
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	4e-06
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	6e-06
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	9e-06
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-05
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-05
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-05
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	1e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	2e-05
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	3e-05
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	5e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	6e-05
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	6e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	6e-05
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	7e-05
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	7e-05
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	8e-05
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	8e-05
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	9e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	1e-04
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	1e-04
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	2e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	2e-04
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-04
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-04
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	2e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	2e-04
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	2e-04
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	3e-04
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	3e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	3e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	3e-04
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-04
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	3e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	4e-04
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	4e-04
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	5e-04
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	8e-04
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	9e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	9e-04
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	0.001
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	0.001
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	0.001
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	0.001
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	0.001
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	0.001
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	0.002
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	0.002
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.002
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.003
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	0.004
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  213 bits (543), Expect = 5e-59
 Identities = 147/440 (33%), Positives = 223/440 (50%), Gaps = 17/440 (3%)

Query: 136 SSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISA 195
           SS  +++ SN+       G I R ++  LE +D+ +N L G+ P+ I +FS+L+ +D+  
Sbjct: 118 SSLRYLNLSNNNFT----GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173

Query: 196 NMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIG 255
           N+L G+IP+SL  L SL +L+++ N    ++P  +  + SL+ I L  N   G +P  IG
Sbjct: 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233

Query: 256 FNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLS 315
             + ++N L +  NN TG +P S  N  NLQ L +Y+N  SG +      L  L  L LS
Sbjct: 234 -GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQIS 375
            N+L  E         L+     +E+L+L +N F G    ++ +L  ++ V+ +  N+ S
Sbjct: 293 DNSLSGEIPE------LVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFS 345

Query: 376 GTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTL 435
           G IP  +    N+    +  N LTG IP  +    NL  L L  NSL G IP +LG    
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405

Query: 436 LNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSE 495
           L R+ L  N+  G +PS          L   LD+S N L G I     ++ +L    L+ 
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLP----LVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 496 NHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLE 555
           N F   +P        LE L L  N FSG++P  L +L  + +L LS N LSG+IP  L 
Sbjct: 462 NKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 556 NLLFLAYLNLSYNHFEGEVP 575
           +   L  L+LS+N   G++P
Sbjct: 521 SCKKLVSLDLSHNQLSGQIP 540

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  211 bits (539), Expect = 2e-58
 Identities = 151/471 (32%), Positives = 226/471 (47%), Gaps = 61/471 (12%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           NL  LE + +  NQL+G+ P  +    +L+ I +  N L G IP  +  L SLN+L +  
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNV-------NFLS------V 266
           NN +  +P S+ N+ +L+ + L+ N+  G +P +I F++  +       N LS      V
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELV 304

Query: 267 GQ-----------NNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLS 315
            Q           NNFTG +P + ++   LQVL ++ N FSG++  +  + +NL+ L LS
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQIS 375
            NNL  E          L +   +  L L +N   G   +S+    + +  + + DN  S
Sbjct: 365 TNNLTGEIPEG------LCSSGNLFKLILFSNSLEGEIPKSLGACRS-LRRVRLQDNSFS 417

Query: 376 GTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTL 435
           G +PSE   L  +    +  N L G I     ++ +LQ L+L RN   G +PD+ G+  L
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL 477

Query: 436 LNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSE 495
            N                             LDLS N   G++P ++G+L  L +  LSE
Sbjct: 478 EN-----------------------------LDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 496 NHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLE 555
           N  S EIP  LS+C  L  L L  N  SG +P S   +  + +LDLS+N LSG+IPK L 
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Query: 556 NLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC 606
           N+  L  +N+S+NH  G +P  G F       + GN  LCGG     LP C
Sbjct: 569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPC 619

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  208 bits (530), Expect = 3e-57
 Identities = 137/417 (32%), Positives = 214/417 (51%), Gaps = 15/417 (3%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQL-RSLNYLSIS 218
           N  ++  ID+    + GK    I     ++ I++S N L G IPD +     SL YL++S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 219 ENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
            NNF+  +P    +I +LE + L +N   G +P +IG    ++  L +G N   G +P+S
Sbjct: 127 NNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNS 183

Query: 279 FSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQ 338
            +N ++L+ L +  N   GQ+  +  ++ +L  ++L  NNL  E   ++  LT L   + 
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL---NH 240

Query: 339 MEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL 398
           ++++Y   N   G    S+ NL   +  + +  N++SG IP  I +L  + +  +  N L
Sbjct: 241 LDLVY---NNLTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQ 458
           +G IP  + +L+NL+ L L  N+  G IP  L +L  L  L L  N   G +P +LG   
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356

Query: 459 NLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQ 518
           NL     +LDLS N L G IP  + +  NL +  L  N    EIP +L AC +L  + LQ
Sbjct: 357 NLT----VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 519 GNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575
            NSFSG LP     L  +  LD+S NNL G+I     ++  L  L+L+ N F G +P
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  187 bits (476), Expect = 4e-50
 Identities = 124/362 (34%), Positives = 186/362 (51%), Gaps = 37/362 (10%)

Query: 215 LSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS 274
           + +S  N S K+  +I+ +  ++ I+L +N+  G +P +I     ++ +L++  NNFTGS
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 275 LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLT 334
           +P       NL+ LD+  N  SG++  D    S+L  L L  N            L    
Sbjct: 134 IPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-----------VLV--- 177

Query: 335 NCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE 394
                           G    S+ NL+  +  + +  NQ+ G IP E+  + ++    + 
Sbjct: 178 ----------------GKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220

Query: 395 YNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL 454
           YN L+G IP+ IG L +L  L LV N+L G IP +LGNL  L  LFL  N L G +P S+
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Query: 455 GNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEY 514
            + Q L++    LDLS N L G IP  V  L+NL    L  N+F+ +IPV L++   L+ 
Sbjct: 281 FSLQKLIS----LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 515 LHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEV 574
           L L  N FSG +P +L    ++  LDLS NNL+G+IP+ L +   L  L L  N  EGE+
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 575 PR 576
           P+
Sbjct: 397 PK 398

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  167 bits (425), Expect = 1e-43
 Identities = 110/313 (35%), Positives = 164/313 (52%), Gaps = 22/313 (7%)

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLG-------TESTSDLDFLTL 332
           +N+S +  +D+   + SG++     RL  +  + LS N L          ++S L +L L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 333 LTN----------CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI 382
             N             +E L L+ N   G     I + S  + V+ +G N + G IP+ +
Sbjct: 126 SNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPNSL 184

Query: 383 KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442
            NL ++    +  NQL G IP  +G++K+L+ + L  N+L G IP  +G LT LN L L 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEI 502
           +NNL G +PSSLGN +NL    + L L  N L G IP  + +L+ L   DLS+N  S EI
Sbjct: 245 YNNLTGPIPSSLGNLKNL----QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 503 PVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAY 562
           P  +     LE LHL  N+F+G +P++L +L  ++ L L  N  SG+IPK L     L  
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 563 LNLSYNHFEGEVP 575
           L+LS N+  GE+P
Sbjct: 361 LDLSTNNLTGEIP 373

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  138 bits (348), Expect = 6e-34
 Identities = 90/273 (32%), Positives = 142/273 (52%), Gaps = 12/273 (4%)

Query: 304 NRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAK 363
           N  S +  + LS  N+  + +S +  L  +      + + L+ N+  G     I   S+ 
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYI------QTINLSNNQLSGPIPDDIFTTSSS 119

Query: 364 ITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLR 423
           +  + + +N  +G+IP    ++ N+    +  N L+G IP+ IG   +L+ L L  N L 
Sbjct: 120 LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 424 GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG 483
           G IP++L NLT L  L L  N L G +P  LG  ++L    + + L  N L G IP E+G
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL----KWIYLGYNNLSGEIPYEIG 233

Query: 484 NLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSR 543
            L +L   DL  N+ +  IP +L     L+YL L  N  SG +P S+ +L+ +  LDLS 
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 544 NNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR 576
           N+LSG+IP+ +  L  L  L+L  N+F G++P 
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  127 bits (321), Expect = 2e-30
 Identities = 91/262 (34%), Positives = 131/262 (50%), Gaps = 19/262 (7%)

Query: 359 NLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGEL-KNLQGLAL 417
           N S+++  I +    ISG I S I  L  I    +  NQL+G IP  I     +L+ L L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 418 VRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS 477
             N+  G+IP   G++  L  L L  N L G +P+ +G+  +L    ++LDL GN+L G 
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL----KVLDLGGNVLVGK 179

Query: 478 IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIK 537
           IP  + NL +L    L+ N    +IP  L    +L++++L  N+ SG +P  +  L S+ 
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 538 ELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHL-IGNERLCG 596
            LDL  NNL+G IP  L NL  L YL L  N   G +P   +F  +  I L + +  L G
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSG 298

Query: 597 ----------GLEELHLPSCHF 608
                      LE LHL S +F
Sbjct: 299 EIPELVIQLQNLEILHLFSNNF 320

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.6 bits (186), Expect = 3e-14
 Identities = 43/110 (39%), Positives = 69/110 (62%), Gaps = 5/110 (4%)

Query: 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
           I+  G++   L G IP+ I +L++LQ + L  NS+RG IP +LG++T L  L L +N+  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 448 GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGN-LRNLAEFDLSEN 496
           G++P SLG     +T  R+L+L+GN L G +P  +G  L + A F+ ++N
Sbjct: 480 GSIPESLG----QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 71.1 bits (175), Expect = 6e-14
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK-SFVTECEALSNVRHRNLIKIITVC 114
           +G+G FG VY  +  +TG  VA+K++  +   +     + E E L  + H N++K+  V 
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
              +        L+ EY + GS +D + ++  KL 
Sbjct: 61  EDENHLY-----LVMEYCEGGSLKDLLKENEGKLS 90

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 5e-13
 Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 371 DNQ-ISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDT 429
           DNQ + G IP++I  L ++ +  +  N + G IP ++G + +L+ L L  NS  G+IP++
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 430 LGNLTLLNRLFLGFNNLQGNVPSSLG 455
           LG LT L  L L  N+L G VP++LG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 13/116 (11%)

Query: 54  NMIGQGSFGFVYKGKL---GETGTTVAVKVMNL-KQKGAAKSFVTECEALSNVRHRNLIK 109
             +G+G+FG VYKGKL       T VAVK +     +   K F+ E   +  + H N+++
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60

Query: 110 IITVCSSID--FKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLK 163
           ++ VC+  +  +       L+ EYM+ G   D++ +S     +     +   +LL 
Sbjct: 61  LLGVCTEEEPLY-------LVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLS 109

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 5e-12
 Identities = 39/92 (42%), Positives = 55/92 (59%)

Query: 467 LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSL 526
           L L    L G IP ++  LR+L   +LS N     IP +L + T+LE L L  NSF+GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 527 PLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558
           P SL  L S++ L+L+ N+LSG++P  L   L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 65.2 bits (160), Expect = 9e-12
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 56  IGQGSFGFVYKGKL----GETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKI 110
           +G+G+FG VYKG L      T T VAVK +     +   + F+ E   +  + H N++++
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRL 66

Query: 111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
           + VC+    +G     ++ EYM  G   D++ +  +KL
Sbjct: 67  LGVCT----QGEPLY-IVTEYMPGGDLLDFLRKHGEKL 99

Length = 258

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 5e-11
 Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 6/110 (5%)

Query: 502 IPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLA 561
           IP  +S    L+ ++L GNS  G++P SL ++ S++ LDLS N+ +G IP+ L  L  L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 562 YLNLSYNHFEGEVPRK--GVFGNRTGIHLIGNERLCG--GLEEL--HLPS 605
            LNL+ N   G VP    G   +R   +   N  LCG  GL     HL  
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSV 543

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 5e-11
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 414 GLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL 473
           GL L    LRG IP+ +  L  L  + L  N+++GN+P SLG+    +T   +LDLS N 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS----ITSLEVLDLSYNS 477

Query: 474 LGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSA 508
             GSIP  +G L +L   +L+ N  S  +P  L  
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNL-KQKGAAKSFVTECEALSNVRHRNLIKIITVC 114
           +G+GSFG VY  +  +TG  VA+KV+   K K   +  + E + L  ++H N++++  V 
Sbjct: 7   LGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDV- 65

Query: 115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
               F+  D   L+ EY + G   D + +
Sbjct: 66  ----FEDEDKLYLVMEYCEGGDLFDLLKK 90

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 59.9 bits (146), Expect = 5e-10
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 50  FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIK 109
           F     IG+G FG VYK +   TG  VA+KV+ L+ K   +  + E + L   +H N++K
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVK 61

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLK 163
                 S   K  D   ++ E+   GS +D +  +N  L    +  + +  LLK
Sbjct: 62  YYG---SYLKK--DELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCK-ELLK 109

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 49  NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHRN 106
           N+   ++IG+G+FG VYKG   ETG  VA+K ++L   ++ A KS + E + L N++H N
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           ++K I        +  D   +I EY + GS
Sbjct: 61  IVKYIGS-----IETSDSLYIILEYAENGS 85

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 9e-10
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 171 DNQ-LIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLS 229
           DNQ L G  P+ I+    L++I++S N + G IP SL  + SL  L +S N+F+  +P S
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 230 IWNISSLEIISLHSNRFEGSLPLNIG 255
           +  ++SL I++L+ N   G +P  +G
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 55  MIGQGSFGFVYKGKL----GETGTTVAVKVMNL-KQKGAAKSFVTECEALSNVRHRNLIK 109
            +G+G+FG VYKG L          VAVK +     +   + F+ E   +  + H N++K
Sbjct: 6   KLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVK 65

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGS 136
           ++ VC+       +   ++ EYM  G 
Sbjct: 66  LLGVCTE-----EEPLMIVMEYMPGGD 87

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA--AKSFVTECEALSNVRHRNLIKII 111
            ++G+GSFG VY     +TG  +AVK + L        ++   E   LS+++H N+++  
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 112 TVCSSIDFKGVDFKALIYEYMKCGS 136
                 +   ++   +  EY+  GS
Sbjct: 66  GSERDEEKNTLN---IFLEYVSGGS 87

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 57.5 bits (140), Expect = 3e-09
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 55  MIGQGSFGFVYKGKL----GETGTTVAVKVMNL-KQKGAAKSFVTECEALSNVRHRNLIK 109
            +G+G+FG VYKGKL    G+    VAVK +     +   + F+ E   +  + H N++K
Sbjct: 6   KLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVK 65

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
           ++ VC+       +   ++ EYM+ G    ++ ++  KL
Sbjct: 66  LLGVCTE-----EEPLYIVMEYMEGGDLLSYLRKNRPKL 99

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITV 113
           +G GSFG VYK K   TG  VAVK++  +       ++   E   L  + H N++++I  
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDA 66

Query: 114 CSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
                F+  D   L+ EY + G   D++ +  
Sbjct: 67  -----FEDKDHLYLVMEYCEGGDLFDYLSRGG 93

Length = 260

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 5e-08
 Identities = 26/91 (28%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 188 LEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFE 247
           ++ + +    L G IP+ + +LR L  +++S N+    +P S+ +I+SLE++ L  N F 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 248 GSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
           GS+P ++G  + ++  L++  N+ +G +P +
Sbjct: 480 GSIPESLG-QLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 5e-08
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 2/107 (1%)

Query: 342 LYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGT 401
           L L+     G     I+ L   +  I +  N I G IP  + ++ ++    + YN   G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 402 IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG 448
           IP ++G+L +L+ L L  NSL G +P  LG   LL+R    F +  G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR-LLHRASFNFTDNAG 527

Length = 623

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 23/107 (21%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVK------VMNLKQKGAAKSFVTECEALSNVRHRNLIK 109
           IG+G+FG VYKG L +  T VAVK        +LK+K     F+ E E L    H N++K
Sbjct: 3   IGKGNFGDVYKGVL-KGNTEVAVKTCRSTLPPDLKRK-----FLQEAEILKQYDHPNIVK 56

Query: 110 IITVCSSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLEAGNL 153
           +I VC          K  IY   E +  GS   ++ +  ++L    L
Sbjct: 57  LIGVCVQ--------KQPIYIVMELVPGGSLLTFLRKKKNRLTVKKL 95

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.6 bits (131), Expect = 8e-08
 Identities = 75/272 (27%), Positives = 112/272 (41%), Gaps = 21/272 (7%)

Query: 298 QVKIDFNRLSNLSRLF-LSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRS 356
           +++ + + L  L+ L  L  +N        L  L           L L+ NK     L S
Sbjct: 104 RLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKE----LDLSDNKIE--SLPS 157

Query: 357 IANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLA 416
                  +  + +  N +S  +P  + NL N+N   +  N+++  +P  I  L  L+ L 
Sbjct: 158 PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD 215

Query: 417 LVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGG 476
           L  NS+   +  +L NL  L+ L L  NN   ++P S+GN  NL      LDLS N +  
Sbjct: 216 LSNNSII-ELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNL----ETLDLSNNQI-- 267

Query: 477 SIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSI 536
           S    +G+L NL E DLS N  SN +P+       LE   L  N       L LK    +
Sbjct: 268 SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLE---LLLNLLLTLKALELKLNSIL 324

Query: 537 KELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
              ++  N      P+ L  L  L  L    N
Sbjct: 325 LNNNILSNGE-TSSPEALSILESLNNLWTLDN 355

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 24/70 (34%), Positives = 43/70 (61%)

Query: 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN 220
           L  L+ I++  N + G  P  + + ++LE +D+S N   G IP+SL QL SL  L+++ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 221 NFSCKLPLSI 230
           + S ++P ++
Sbjct: 501 SLSGRVPAAL 510

Length = 623

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 53  SNMIGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGAAKS-FVTECEALSNVRHRNL 107
              +G+G FG V   +       TG  VAVK +N   +   +S F  E E L  + H N+
Sbjct: 9   IKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENI 68

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           +K   VC     + +    LI EY+  GS  D++ +  D++    L
Sbjct: 69  VKYKGVCEKPGGRSL---RLIMEYLPSGSLRDYLQRHRDQINLKRL 111

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 15/88 (17%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNL 107
           +G+G+FG V+ G+            VAVK   LK+     A K F  E E L+N +H N+
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKT--LKETASNDARKDFEREAELLTNFQHENI 70

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCG 135
           +K   VC+    +G D   +++EYM+ G
Sbjct: 71  VKFYGVCT----EG-DPPIMVFEYMEHG 93

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITV 113
           IG+G+ G V+K K  ETG TVA+K + L++   G     + E +AL   +H  ++K++ V
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDV 67

Query: 114 CSSIDFKGVDFKALIYEYM 132
                  G  F  L+ EYM
Sbjct: 68  FP----HGSGF-VLVMEYM 81

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 22/79 (27%), Positives = 46/79 (58%), Gaps = 5/79 (6%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITV 113
           IG+G++G VYK +  +TG  VA+K + ++ +  G   + + E + L  +RH N++++  +
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEI 66

Query: 114 CSSIDFKGVDFKALIYEYM 132
            +S     +    +++EYM
Sbjct: 67  VTSKGKGSI---YMVFEYM 82

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 51.4 bits (124), Expect = 5e-07
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 38  VSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECE 97
           VS  D  +   N      IG+G+ G VYK     TG  VA+K M L+++   +  + E  
Sbjct: 12  VSEGDPRELYKNLE---KIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEIL 67

Query: 98  ALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
            + + +H N++       S       +  ++ EYM  GS
Sbjct: 68  IMKDCKHPNIVDYY---DSYLVGDELW--VVMEYMDGGS 101

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 50  FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIK 109
           F+    +G G FG V++G L +    VA+K++        + F  E +AL  +RH++LI 
Sbjct: 8   FTLERKLGSGYFGEVWEG-LWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLIS 66

Query: 110 IITVCSS 116
           +  VCS 
Sbjct: 67  LFAVCSV 73

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG+G FG V  G     G  VAVK +      AA++F+ E   ++ +RH NL++++ V  
Sbjct: 14  IGKGEFGDVMLGDY--RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVV- 69

Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWM 141
            +    +    ++ EYM  GS  D++
Sbjct: 70  -LQGNPL---YIVTEYMAKGSLVDYL 91

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVK--VMNLKQKGAAKSFVTECEALSNVRHR 105
           + +     IGQG+FG V+K +  +T   VA+K  +M  +++G   + + E + L  ++H 
Sbjct: 12  SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHE 71

Query: 106 NLIKIITVCSSIDFKGVDFKALIY 129
           N++ +I +C +       +K   Y
Sbjct: 72  NVVNLIEICRTKATPYNRYKGSFY 95

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 17/86 (19%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-------HRNLI 108
           +G G+FG VY  +  ETG  VA+K M  K+K  +     EC  L  V+       H N++
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKM--KKKFYSWE---ECMNLREVKSLRKLNEHPNIV 61

Query: 109 KIITVCSSIDFKGVDFKALIYEYMKC 134
           K+  V     F+  D    ++EYM+ 
Sbjct: 62  KLKEV-----FRENDELYFVFEYMEG 82

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG G++G VYK +   TG  VA+KV+ L+     +    E   L   RH N++       
Sbjct: 11  IGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFG--- 67

Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLE 165
              +   D   ++ EY   GS +D    +   L    +  + R  L  L 
Sbjct: 68  --SYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLA 115

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITV 113
           IG+G FG V +G+   TG  VAVK  N+K    A++F+ E   ++ + H+NL++++ V
Sbjct: 14  IGEGEFGAVLQGEY--TGQKVAVK--NIKCDVTAQAFLEETAVMTKLHHKNLVRLLGV 67

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 9e-06
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 494 SENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY 553
           S         +T +  + +  + L G + SG +  ++  L  I+ ++LS N LSG IP  
Sbjct: 53  SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD 112

Query: 554 LENLLF-LAYLNLSYNHFEGEVPRKGVFGNRT 584
           +      L YLNLS N+F G +PR  +    T
Sbjct: 113 IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144

Length = 968

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 19/106 (17%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVC 114
           +G G FG V+ G    T T VAVK   LK    + ++F+ E + +  +RH  L+++  VC
Sbjct: 14  LGAGQFGEVWMGTWNGT-TKVAVKT--LKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVC 70

Query: 115 SSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLEAGNLGLIQ 157
           S  +         IY   EYM  GS  D++       E   L L Q
Sbjct: 71  SEEE--------PIYIVTEYMSKGSLLDFLKSG----EGKKLRLPQ 104

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG+G FG V  G     G  VAVK   +K    A++F+ E   ++ +RH NL++++ V  
Sbjct: 14  IGKGEFGDVMLGD--YRGNKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVI- 68

Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWM 141
            ++ KG  +  ++ EYM  GS  D++
Sbjct: 69  -VEEKGGLY--IVTEYMAKGSLVDYL 91

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 13/122 (10%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKS-FVTECEALSNVRHRNLIK 109
           +G+G+FG VYKG+L       + T+VA+K +    +   +  F  E E +S+++H N++ 
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVC 72

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDW--MHQSNDKLEAGNLGLIQRLNLLKLEMI 167
           ++ VC+    K      +++EY+  G   ++   +  +  + A +     + +L   + +
Sbjct: 73  LLGVCT----KEQPT-CMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFL 127

Query: 168 DV 169
            +
Sbjct: 128 HI 129

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITV 113
           IG+G++G VYK +   TG  VA+K + L+   +G  K+ + E + L  + H N+IK++ V
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDV 66

Query: 114 CSSIDFKGVDFKALIYEYMK 133
                F+      L++E+M 
Sbjct: 67  -----FRHKGDLYLVFEFMD 81

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 55  MIGQGSFGFVYKG---KLGET-GTTVAVKVMNLKQKGAAKS---FVTECEALSNVRHRNL 107
           ++G G+FG VYKG     GE     VA+KV  L+++ + K+    + E   +++V H ++
Sbjct: 14  VLGSGAFGTVYKGVWIPEGEKVKIPVAIKV--LREETSPKANKEILDEAYVMASVDHPHV 71

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEA 150
           ++++ +C S          LI + M  G   D++    D + +
Sbjct: 72  VRLLGICLSSQV------QLITQLMPLGCLLDYVRNHKDNIGS 108

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 50  FSASNMIGQGSFGFVYKGKLG-ETGTTVAVKVMNLKQKGAAKS----FVTECEALSNVRH 104
                ++G+G FG V +G+L  + G+ + V V  +K      S    F++E   + +  H
Sbjct: 1   LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDH 60

Query: 105 RNLIKIITVC-SSIDFKGVDFKALIYEYMKCG 135
            N++K+I VC  +   + +    +I  +MK G
Sbjct: 61  PNVMKLIGVCFEASSLQKIPKPMVILPFMKHG 92

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNL-----KQKGAAKSFVTECEALSNVRHRNLI 108
             IG+GSFG VY  +    G    +K ++L     K++  A +   E + L  + H N+I
Sbjct: 6   KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALN---EVKILKKLNHPNII 62

Query: 109 K 109
           K
Sbjct: 63  K 63

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 32/204 (15%)

Query: 55  MIGQGSFGFVYKGKLGETGTT----VAVKVMNLKQKGAAK-SFVTECEALSNVRHRNLIK 109
           ++G G+FG VYKG     G T    VA+K++N      A   F+ E   ++++ H +L++
Sbjct: 14  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVR 73

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSND------------KLEAGNLGLIQ 157
           ++ VC S   +      L+ + M  G   D++H+  D            ++  G + L +
Sbjct: 74  LLGVCLSPTIQ------LVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEE 127

Query: 158 RLNLLKLEMIDVGDNQLIGKFPDF--IANFS---ALEAIDISANMLGGRIPDSLCQLRSL 212
           R    +L   D+    ++ K P+   I +F     LE  +   N  GG++P     L  +
Sbjct: 128 R----RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECI 183

Query: 213 NYLSISENNFSCKLPLSIWNISSL 236
           +Y   +  +      ++IW + + 
Sbjct: 184 HYRKFTHQSDVWSYGVTIWELMTF 207

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL 83
          F+    IG+GSFG VYK     T   VA+KV++L
Sbjct: 3  FTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDL 36

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 8/96 (8%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIIT 112
           + +G G +G VY+G   +   TVAVK   LK+     + F+ E   +  ++H NL++++ 
Sbjct: 12  HKLGGGQYGEVYEGVWKKYSLTVAVKT--LKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 69

Query: 113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
           VC+    +   F  +I E+M  G+  D++ + N + 
Sbjct: 70  VCT----REPPF-YIITEFMTYGNLLDYLRECNRQE 100

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 15/91 (16%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA-AKSFVTECEALSNVRHRNLIKIITVC 114
           +G G FG V++G    T T VAVK   LK      K F+ E + +  +RH  LI++  VC
Sbjct: 14  LGAGQFGEVWEGLWNNT-TPVAVK--TLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVC 70

Query: 115 SSIDFKGVDFKALIY---EYMKCGSSEDWMH 142
           +  +         IY   E MK GS  +++ 
Sbjct: 71  TLEE--------PIYIVTELMKYGSLLEYLQ 93

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+FG VYK K  ETG   A KV+  K +   + ++ E E L+   H  ++K++
Sbjct: 20  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLL 75

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 50  FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHRNL 107
           F     IG+G++G VYK +  +TG  VA+K + L  +++G   + + E + L  + HRN+
Sbjct: 9   FDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNI 68

Query: 108 IKIITVCSSIDFKGVDFKA------LIYEYM 132
           + +  + +      +DFK       L++EYM
Sbjct: 69  VNLKEIVTD-KQDALDFKKDKGAFYLVFEYM 98

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 49  NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHRN 106
           NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H N
Sbjct: 1   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 60

Query: 107 LIKIITVCSS 116
           ++K++ V  +
Sbjct: 61  IVKLLDVIHT 70

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 12/102 (11%)

Query: 56  IGQGSFGFVYKGKLGETG-------TTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLI 108
           +GQG+F  ++KG   E G       T V +KV++   +  ++SF      +S + H++L+
Sbjct: 3   LGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLV 62

Query: 109 KIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEA 150
               VC        D   ++ EY+K GS + ++ ++ + +  
Sbjct: 63  LNYGVCV-----CGDESIMVQEYVKFGSLDTYLKKNKNLINI 99

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 18/130 (13%)

Query: 49  NFSASNMIGQGSFGFVYKGKL----GETG-TTVAVKVMNLKQKGAAKS----FVTECEAL 99
           N      +G+G FG V K       G  G TTVAVK++   ++ A+ S     ++E   L
Sbjct: 1   NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKML---KENASSSELRDLLSEFNLL 57

Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRL 159
             V H ++IK+   CS     G     LI EY K GS   ++ +S  K+    LG     
Sbjct: 58  KQVNHPHVIKLYGACSQ---DGPLL--LIVEYAKYGSLRSFLRESR-KVGPSYLGSDGNR 111

Query: 160 NLLKLEMIDV 169
           N   L+  D 
Sbjct: 112 NSSYLDNPDE 121

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 15/29 (51%), Positives = 23/29 (79%)

Query: 55 MIGQGSFGFVYKGKLGETGTTVAVKVMNL 83
          +IG+G++G VY+GK   TG  VA+K++NL
Sbjct: 8  LIGRGAYGAVYRGKHVPTGRVVALKIINL 36

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+FG VYK +  ETG   A K++ ++ +   + F+ E + LS  +H N++ + 
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLY 68

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 515 LHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEV 574
           L L      G +P  +  L+ ++ ++LS N++ G IP  L ++  L  L+LSYN F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 575 P 575
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 49  NFSASNMIGQGSFGFVYKGKLGETGTTVAVKV--MNLKQKGAAKSFVTECEALSNVRHRN 106
            F   N IG+G++G VY+ +   +G  VA+K   M+ ++ G   S + E   L N+RH N
Sbjct: 8   EFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPN 67

Query: 107 LIKIITV 113
           ++++  V
Sbjct: 68  IVELKEV 74

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 53  SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIK 109
            N IG G+FG VY     +TG  +AVK + ++       K    E + L  ++H NL+K
Sbjct: 5   GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVK 63

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 25/142 (17%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +GQG FG V+ G    T T VA+K +      + ++F+ E + +  +RH  L+++  V S
Sbjct: 14  LGQGCFGEVWMGTWNGT-TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 71

Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE------------AGNLGLIQRLNL-- 161
                  +   ++ EYM  GS  D++     K              A  +  ++R+N   
Sbjct: 72  E------EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH 125

Query: 162 --LKLEMIDVGDNQLIGKFPDF 181
             L+   I VG+N L+ K  DF
Sbjct: 126 RDLRAANILVGEN-LVCKVADF 146

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA-KSFVTECEALSNVRHRNLIKIITVC 114
           +GQGS G VYK +   TG   A+K +++       K  + E + L +     ++K     
Sbjct: 9   LGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVK----- 63

Query: 115 SSIDFKGVDFK----ALIYEYMKCGSSED 139
                 G  +K    +++ EYM  GS  D
Sbjct: 64  ----CYGAFYKEGEISIVLEYMDGGSLAD 88

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 19/92 (20%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSF---VTECEALSNVRHRNLIKIIT 112
           IG GSFG VY  +   T   VA+K M+   K + + +   + E   L  +RH N      
Sbjct: 23  IGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPN------ 76

Query: 113 VCSSIDFKGVDFKA----LIYEYMKC-GSSED 139
              +I++KG   +     L+ EY  C GS+ D
Sbjct: 77  ---TIEYKGCYLREHTAWLVMEY--CLGSASD 103

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITV 113
           IG+G++G VYK +   T  T+A+K + L+Q  +G   + + E   L  ++H N++++  V
Sbjct: 10  IGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDV 69

Query: 114 CSS 116
             S
Sbjct: 70  VHS 72

Length = 294

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNV-RHRNLIKII 111
           IG+GSF  V   K  ET    A+K+++   L ++   K    E E L+ +  H  +IK+ 
Sbjct: 9   IGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLY 68

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK-----SFVTECEALSNVRHRNLIKI 110
           +G+G++  VYK +  ETG  VA+K + L ++  AK     + + E + L  ++H N+I +
Sbjct: 8   LGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGL 67

Query: 111 ITVCSSIDFKGVDFKALIYEYM 132
           + V     F       L++E+M
Sbjct: 68  LDV-----FGHKSNINLVFEFM 84

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 55  MIGQGSFGFVYKGK---LGE-TGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKI 110
            +G+G+FG V   +   L + TG  VAVK +        + F  E E L +++H N++K 
Sbjct: 11  QLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKY 70

Query: 111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
             VC S   + +    L+ EY+  GS  D++ +  ++L+   L
Sbjct: 71  KGVCYSAGRRNL---RLVMEYLPYGSLRDYLQKHRERLDHRKL 110

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVM--NLKQKGAAKSFVTECEALSNVRHRNLIKIIT 112
           ++G+G+FG V+KG L +  T VAVK    +L Q+   K F++E   L    H N++K+I 
Sbjct: 2   LLGKGNFGEVFKGTLKDK-TPVAVKTCKEDLPQELKIK-FLSEARILKQYDHPNIVKLIG 59

Query: 113 VCS 115
           VC+
Sbjct: 60  VCT 62

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 18/92 (19%)

Query: 54  NMIGQGSFGFVYKGKL------GETGTTVAVKVMNLKQKGAA----KSFVTECEALSNVR 103
           N +G G+FG VY+G        G     VAVK +   +KGA     K F+ E   +SN  
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTL---RKGATDQEKKEFLKEAHLMSNFN 57

Query: 104 HRNLIKIITVCSSIDFKGVDFKALIYEYMKCG 135
           H N++K++ VC        + + +I E M+ G
Sbjct: 58  HPNIVKLLGVCLL-----NEPQYIIMELMEGG 84

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 9/82 (10%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITV 113
           +G+G++G VYK +  +TG  VA+K + L  +  G   + + E   L  ++H N++K++ V
Sbjct: 7   LGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDV 66

Query: 114 CSSIDFKGVDFK-ALIYEYMKC 134
             +        K  L++EY   
Sbjct: 67  IHTER------KLYLVFEYCDM 82

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+FG VYK +  ETG   A KV++ K +   + ++ E + L++  H N++K++
Sbjct: 13  LGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLL 68

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA-AKSFVTECEA----LSNVRHRNLIK 109
           ++G GSFG VY+G   + G   AVK ++L   G   +  V + E     LS ++H N+++
Sbjct: 7   LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITV 113
           IG+G++G VYKG+  +TG  VA+K + L+  ++G   + + E   L  ++H N++ +  V
Sbjct: 8   IGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDV 67

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHRNLIKIITV 113
           IG G++G V       TG  VA+K ++        AK  + E + L ++RH N+I ++ +
Sbjct: 8   IGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDI 67

Query: 114 CSSIDFKGVDFKAL--IYEYM 132
                    DF  +  + E M
Sbjct: 68  --LRPPSPEDFNDVYIVTELM 86

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVM--NLKQKGAAKSFVTECEALSNVRHRNLIKIIT 112
           ++G+GS+G V K K  ETG  VA+K    +   K   K  + E   L  +RH NL+ +I 
Sbjct: 8   LVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIE 67

Query: 113 VC 114
           V 
Sbjct: 68  VF 69

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 20/121 (16%)

Query: 56  IGQGSFGFVYKGKLGETGTT-----VAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKI 110
           +G+G+FG V+  +      T     VAVK +      A K F  E E L+N++H +++K 
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 72

Query: 111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMH----------QSNDKLEAGNLGLIQRLN 160
             VC        D   +++EYMK G    ++               +   G LGL Q L+
Sbjct: 73  YGVCGD-----GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLH 127

Query: 161 L 161
           +
Sbjct: 128 I 128

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 11/66 (16%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVM------NLKQKGAAKSFVTECEALSNVRHRNLIK 109
           IG+G+FG V+ G+L    T VAVK        +LK K     F+ E   L    H N+++
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAK-----FLQEARILKQYSHPNIVR 57

Query: 110 IITVCS 115
           +I VC+
Sbjct: 58  LIGVCT 63

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK 84
          L   T  F    +IG+G++G VYK +  +TG  VA+K+M++ 
Sbjct: 1  LPDPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDII 42

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 21/110 (19%)

Query: 54  NMIGQGSFGFVYKGKLGETG---TTVAVKVMNLKQKGAAKS---FVTECEALSNVRHRNL 107
            +IG G FG V +G+L   G     VA+K   LK   + K    F+TE   +    H N+
Sbjct: 10  KVIGGGEFGEVCRGRLKLPGKKEIDVAIKT--LKAGSSDKQRLDFLTEASIMGQFDHPNI 67

Query: 108 IKIITVCSSIDFKGVDFKA----LIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           I++          GV  K+    +I EYM+ GS + ++ +++ K   G L
Sbjct: 68  IRLE---------GVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQL 108

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 53/166 (31%), Positives = 72/166 (43%), Gaps = 5/166 (3%)

Query: 431 GNLTLLNRLFLGFNNLQGN-VPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLA 489
           G+  LLN L L   +L  N + S++     L T    LDL  N +    PL      NL 
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELLEL-TNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 490 EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQ 549
           E DLS+N     +P  L     L+ L L  N  S  LP  L  L ++  LDLS N +S  
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 550 IPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLC 595
           +P  +E L  L  L+LS N     +       N +G+ L  N+   
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED 246

Length = 394

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 15/97 (15%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G+GS+G VYK    ETG  VA+KV+ +  +   +  + E   L       ++K      
Sbjct: 11  LGEGSYGSVYKAIHKETGQVVAIKVVPV--EEDLQEIIKEISILKQCDSPYIVK------ 62

Query: 116 SIDFKGVDFKA----LIYEYMKCGSSEDWMHQSNDKL 148
              + G  FK     ++ EY   GS  D M  +N  L
Sbjct: 63  ---YYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTL 96

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 56  IGQGSFGFVYKGK-LGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+FG V KG  L ++G  V V V  LKQ       K F+ E   ++ + H  ++++I
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 112 TVC 114
            VC
Sbjct: 63  GVC 65

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 41.2 bits (96), Expect = 9e-04
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 48  NNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNV 102
           +N      +G+G+FG V+  +       +    VAVK +      A K F  E E L+N+
Sbjct: 5   HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL 64

Query: 103 RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCG 135
           +H +++K   VC     +G D   +++EYMK G
Sbjct: 65  QHEHIVKFYGVC----VEG-DPLIMVFEYMKHG 92

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 19/120 (15%)

Query: 56  IGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKI 110
           +G+G+FG V+  +       +    VAVK +    + A + F  E E L+ ++H+++++ 
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWM--HQSNDKLEA-------GNLGLIQRLNL 161
             VC+           +++EYM+ G    ++  H  + K+ A       G L L Q L +
Sbjct: 73  YGVCTE-----GRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAI 127

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 49  NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL-KQKGAAKSFVTECEALSNVRHRNL 107
           NF     +G+G++  VYKG+   TG  VA+K ++L  ++G   + + E   +  ++H N+
Sbjct: 1   NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENI 60

Query: 108 IKIITVCSSIDFKGVDFKALIYEYM 132
           +++  V  + + K +    L++EYM
Sbjct: 61  VRLHDVIHTEN-KLM----LVFEYM 80

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 55  MIGQGSFGFVYKG---KLGETGTTVAVKVMNLKQKGAAKS-FVTECEALSNVRHRNLIKI 110
            IG+G FG VY+G           VAVK        + +  F+ E   +    H +++K+
Sbjct: 13  CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKL 72

Query: 111 ITVCS 115
           I V +
Sbjct: 73  IGVIT 77

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 20/123 (16%)

Query: 48  NNFSASNMIGQGSFGFVYKGKL---GETGTTVAVKVMNL----KQKGAAKSFVTECEALS 100
           ++ +   +IG G FG V++G L   G     VA+K +      KQ+   + F++E   + 
Sbjct: 5   SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQR---QDFLSEASIMG 61

Query: 101 NVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLN 160
              H N+I++  V +   FK      +I EYM+ G+ + ++   +     G     Q + 
Sbjct: 62  QFSHHNIIRLEGVVTK--FKPA---MIITEYMENGALDKYLRDHD-----GEFSSYQLVG 111

Query: 161 LLK 163
           +L+
Sbjct: 112 MLR 114

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 25/142 (17%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G G FG V+ G      T VAVK +      + +SF+ E + +  +RH  L+++  V S
Sbjct: 14  LGNGQFGEVWMGTWNGN-TKVAVKTLK-PGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS 71

Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSND---KLE---------AGNLGLIQRLNLLK 163
                      ++ EYM  GS  D++        KL          A  +  I+R+N + 
Sbjct: 72  EEPI------YIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIH 125

Query: 164 LEM----IDVGDNQLIGKFPDF 181
            ++    I VGD  L+ K  DF
Sbjct: 126 RDLRSANILVGDG-LVCKIADF 146

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 15/88 (17%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAA---KSFVTECEALSNVRHRNL 107
           IGQG+FG V++ +       E  T VAVK+  LK++ +A     F  E   ++   H N+
Sbjct: 13  IGQGAFGRVFQARAPGLLPYEPFTMVAVKM--LKEEASADMQADFQREAALMAEFDHPNI 70

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCG 135
           +K++ VC+     G     L++EYM  G
Sbjct: 71  VKLLGVCA----VGKPM-CLLFEYMAYG 93

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 512 LEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHF 570
           L+ L L  N  +     + K L ++K LDLS NNL+   P+    L  L  L+LS N+ 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVK-VMNLKQK-GAAKSFVTECEALSNVR 103
              ++     +G+G+FG VYK +  +TG  VA+K ++   +K G   + + E + L  ++
Sbjct: 6   KLRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLK 65

Query: 104 HRNLIKII 111
           H N++ +I
Sbjct: 66  HPNVVPLI 73

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITV 113
           IG+G++G V+K K  ET   VA+K + L    +G   S + E   L  ++H+N++++  V
Sbjct: 8   IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDV 67

Query: 114 CSS 116
             S
Sbjct: 68  LHS 70

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 231 WNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDV 290
           W I  L    L +    G +P +I   + ++  +++  N+  G++P S  + ++L+VLD+
Sbjct: 418 WFIDGL---GLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL 473

Query: 291 YKNHFSGQVKIDFNRLSNLSRLFLSKNNL 319
             N F+G +     +L++L  L L+ N+L
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 53  SNMIGQGSFGFVYKGKLGETGTTVAVK--VMNLKQKGAAKSFVTECEALSNVR---HRNL 107
              IG+G++G VYK +   TG  VA+K   + L ++G   S + E   L  +    H N+
Sbjct: 4   LAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNI 63

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKC 134
           ++++ VC            L++E++  
Sbjct: 64  VRLLDVCHGPRTDRELKLTLVFEHVDQ 90

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITV 113
           IG+G++G VYK +   TG  VA+K + L+   +G   + + E   L  + H N+++++ V
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDV 66

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 30/168 (17%)

Query: 31  MEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK 90
           +E+   +VS  D  K    F     IGQG+ G VY      TG  VA+K MNL+Q+   +
Sbjct: 5   LEKLRTIVSVGDPKKKYTRFEK---IGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKE 61

Query: 91  SFVTECEALSNVRHRNLIKIIT---VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
             + E   +   +H N++  +    V   +         ++ EY+  GS  D + ++   
Sbjct: 62  LIINEILVMRENKHPNIVNYLDSYLVGDEL--------WVVMEYLAGGSLTDVVTET--C 111

Query: 148 LEAGNLGLIQRLNLLKLEMI--------DV-GDNQLIG-----KFPDF 181
           ++ G +  + R  L  LE +        D+  DN L+G     K  DF
Sbjct: 112 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 44/217 (20%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA---KSFVTECEALSNV-RHRNLIK 109
           ++IG+G+FG V +  + + G  +   +  LK+  +    + F  E E L  +  H N+I 
Sbjct: 8   DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIIN 67

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQS----NDKL---EAGNLGLIQRLNLL 162
           ++  C +   +G  + A+  EY   G+  D++ +S     D     E G    +    LL
Sbjct: 68  LLGACEN---RGYLYIAI--EYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLL 122

Query: 163 KLEM-----------------------IDVGDNQLIGKFPDFIANFSALEAIDISANMLG 199
           +                          + VG+N L  K  DF    S  E + +   M  
Sbjct: 123 QFASDVATGMQYLSEKQFIHRDLAARNVLVGEN-LASKIADF--GLSRGEEVYVKKTM-- 177

Query: 200 GRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL 236
           GR+P     + SLNY   +  +      + +W I SL
Sbjct: 178 GRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSL 214

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 411 NLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLS 470
           NL+ L L  N L          L  L  L L  NNL    P +     +L    R LDLS
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSL----RSLDLS 56

Query: 471 GNLL 474
           GN L
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 31  MEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK 90
           +E+   +VS  D  K    F     IGQG+ G VY      TG  VA++ MNL+Q+   +
Sbjct: 6   LEKLRSIVSVGDPKKKYTRFEK---IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKE 62

Query: 91  SFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEA 150
             + E   +   ++ N++  +       +   D   ++ EY+  GS  D + ++   ++ 
Sbjct: 63  LIINEILVMRENKNPNIVNYLD-----SYLVGDELWVVMEYLAGGSLTDVVTETC--MDE 115

Query: 151 GNLGLIQRLNLLKLEMIDVGDNQLIGK 177
           G +  + R  L  LE +    NQ+I +
Sbjct: 116 GQIAAVCRECLQALEFLH--SNQVIHR 140

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 14/89 (15%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKV-----MNLKQKGAAKSFVTECEALSNVRHRNLIKI 110
           IG+GSFG V K +    G  +  K      M  K+K   +  V+E   L  ++H N   I
Sbjct: 8   IGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEK---QQLVSEVNILRELKHPN---I 61

Query: 111 ITVCSSIDFKGVDFKALIYEYMKCGSSED 139
           +     I  +       +Y  M+     D
Sbjct: 62  VRYYDRIIDRS---NQTLYIVMEYCEGGD 87

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGA-AKSFVTECEALSNVRHRNLIKI 110
           +G+G FG V    Y  +   TG  VAVK +  +  G        E E L N+ H N++K 
Sbjct: 12  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 71

Query: 111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
             +C+     G+    LI E++  GS ++++ ++ +K+
Sbjct: 72  KGICTEDGGNGIK---LIMEFLPSGSLKEYLPRNKNKI 106

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	628
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.69
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.51
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.48
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.45
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.41
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.4
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.4
KOG0605	550	consensus NDR and related serine/threonine kinases	99.39
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.39
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.39
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.38
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.37
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.37
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.36
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.36
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.34
PLN03150	623	hypothetical protein; Provisional	99.33
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.33
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.31
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.31
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.3
KOG3653	534	consensus Transforming growth factor beta/activin	99.3
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.29
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.28
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.27
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.27
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.27
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.27
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.24
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.24
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.23
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.23
PLN03150	623	hypothetical protein; Provisional	99.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.21
KOG0586	596	consensus Serine/threonine protein kinase [General	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.19
KOG0610	459	consensus Putative serine/threonine protein kinase	99.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.18
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.18
KOG0198	313	consensus MEKK and related serine/threonine protei	99.18
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.17
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.17
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.17
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.16
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.15
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.14
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.14
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.14
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.14
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.14
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.14
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.13
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.13
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.13
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.13
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.13
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.12
KOG0589	426	consensus Serine/threonine protein kinase [General	99.12
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.12
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.12
KOG0578	550	consensus p21-activated serine/threonine protein k	99.12
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.1
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.1
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.1
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.09
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.09
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.08
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.08
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.08
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.08
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.08
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.07
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.07
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.07
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.07
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.06
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.06
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.06
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.05
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.05
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.05
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.04
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.04
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.04
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.04
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.04
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.04
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.04
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.04
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.03
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.03
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.03
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.02
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.02
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.02
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.02
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.01
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.01
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.01
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.01
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.01
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	98.99
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	98.99
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	98.99
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	98.99
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	98.99
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	98.99
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	98.98
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.98
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	98.98
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	98.98
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	98.98
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	98.98
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	98.97
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	98.97
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	98.97
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	98.97
PRK09188	365	serine/threonine protein kinase; Provisional	98.97
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	98.96
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.96
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	98.96
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	98.96
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	98.96
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	98.96
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	98.95
PTZ00267	478	NIMA-related protein kinase; Provisional	98.95
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	98.95
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	98.94
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	98.94
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	98.94
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	98.94
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	98.94
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	98.94
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	98.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	98.93
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	98.93
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	98.93
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	98.93
PHA02988	283	hypothetical protein; Provisional	98.93
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	98.93
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	98.93
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	98.93
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	98.93
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	98.92
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	98.92
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	98.92
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	98.92
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	98.92
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	98.92
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	98.92
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	98.92
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	98.92
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	98.92
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	98.91
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	98.91
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	98.91
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	98.91
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	98.91
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	98.91
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	98.91
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	98.91
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	98.9
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	98.9
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	98.9
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	98.9
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	98.9
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	98.9
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	98.9
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	98.9
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	98.9
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	98.9
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	98.89
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	98.89
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	98.89
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	98.89
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	98.89
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	98.89
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	98.89
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	98.89
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.89
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	98.89
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	98.89
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	98.89
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	98.89
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	98.88
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	98.88
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	98.88
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	98.88
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	98.88
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	98.88
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	98.88
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	98.88
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	98.87
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	98.87
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	98.87
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	98.87
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	98.87
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	98.87
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	98.87
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	98.87
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.87
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	98.87
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	98.87
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	98.87
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	98.86
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	98.86
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	98.86
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	98.86
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	98.86
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	98.86
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	98.86
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	98.86
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	98.86
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	98.86
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	98.85
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	98.85
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	98.85
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	98.85
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	98.85
PTZ00283	496	serine/threonine protein kinase; Provisional	98.84
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	98.84
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	98.84
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	98.84
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	98.84
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	98.84
KOG1152	772	consensus Signal transduction serine/threonine kin	98.84
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	98.84
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	98.84
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	98.84
PHA03212	391	serine/threonine kinase US3; Provisional	98.84
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	98.84
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	98.83
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	98.83
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	98.83
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	98.83
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	98.82
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.82
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	98.82
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	98.82
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	98.82
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	98.82
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	98.82
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	98.82
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	98.82
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	98.81
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	98.81
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	98.81
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	98.81
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	98.81
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	98.81
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	98.81
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	98.81
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	98.8
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	98.8
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	98.8
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	98.8
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	98.8
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	98.8
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	98.8
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	98.8
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	98.79
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	98.79
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	98.79
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	98.79
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	98.78
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	98.78
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	98.78
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	98.78
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	98.78
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	98.78
PTZ00036	440	glycogen synthase kinase; Provisional	98.78
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	98.77
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	98.77
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	98.77
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	98.77
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	98.76
KOG4721	904	consensus Serine/threonine protein kinase, contain	98.76
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	98.76
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	98.76
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	98.76
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	98.76
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	98.76
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	98.76
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	98.75
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	98.75
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	98.75
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	98.74
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	98.74
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	98.74
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	98.74
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	98.74
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	98.74
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	98.73
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	98.73
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	98.73
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	98.73
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	98.73
PLN00009	294	cyclin-dependent kinase A; Provisional	98.72
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	98.72
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	98.72
PHA03209	357	serine/threonine kinase US3; Provisional	98.72
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	98.72
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	98.72
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	98.71
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	98.71
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	98.71
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	98.71
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.71
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	98.71
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	98.71
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	98.7
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	98.7
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	98.7
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	98.7
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	98.7
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	98.7
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	98.7
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	98.69
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	98.69
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	98.69
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	98.69
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	98.69
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	98.68
PHA03211	461	serine/threonine kinase US3; Provisional	98.68
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	98.68
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	98.68
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	98.68
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	98.68
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	98.67
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	98.67
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	98.67
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.67
KOG0696	683	consensus Serine/threonine protein kinase [Signal	98.66
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	98.66
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	98.66
PTZ00024	335	cyclin-dependent protein kinase; Provisional	98.66
PRK10345	210	hypothetical protein; Provisional	98.66
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	98.66
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	98.65
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	98.65
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	98.65
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	98.65
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	98.64
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	98.63
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	98.63
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	98.62
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	98.6
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	98.6
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.6
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	98.59
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	98.59
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	98.59
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.58
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	98.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.58
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	98.58
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.57
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	98.57
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	98.57
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	98.56
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	98.56
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.55
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	98.55
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	98.55
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	98.54
KOG0584	632	consensus Serine/threonine protein kinase [General	98.54
PTZ00284	467	protein kinase; Provisional	98.53
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	98.51
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	98.51
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	98.51
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.51
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	98.5
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.5
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	98.49
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.47
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	98.47
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	98.47
PHA03207	392	serine/threonine kinase US3; Provisional	98.46
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.46
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	98.44
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.44
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	98.44
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.44
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.42
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	98.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.35
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	98.34
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.3
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.29
PHA03210	501	serine/threonine kinase US3; Provisional	98.26
KOG0596	677	consensus Dual specificity; serine/threonine and t	98.26
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.24
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	98.22
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.2
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.19
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.18
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.13
PRK14879	211	serine/threonine protein kinase; Provisional	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.09
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.08
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.03
smart00090	237	RIO RIO-like kinase.	98.03
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.02
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.01
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	97.99
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	97.97
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.95
KOG1290	590	consensus Serine/threonine protein kinase [Signal	97.94
PRK15386	426	type III secretion protein GogB; Provisional	97.92
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	97.9
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	97.88
KOG1167	418	consensus Serine/threonine protein kinase of the C	97.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.8
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	97.77
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	97.75
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	97.69
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	97.67
KOG1027	903	consensus Serine/threonine protein kinase and endo	97.65
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	97.62
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	97.6
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	97.6
PHA02882	294	putative serine/threonine kinase; Provisional	97.59
PRK12274	218	serine/threonine protein kinase; Provisional	97.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.46
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	97.45
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.42
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	97.26
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	97.25
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	97.21
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.05
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.0
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	96.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.88
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.68
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	96.58
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	96.5
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	96.31
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	96.01
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	95.98
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	95.98
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	95.74
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.46
KOG4341	483	consensus F-box protein containing LRR [General fu	95.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.32
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.27
KOG4341	483	consensus F-box protein containing LRR [General fu	95.08
KOG4308	478	consensus LRR-containing protein [Function unknown	95.06
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.85

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.6e-54  Score=494.55  Aligned_cols=441  Identities=34%  Similarity=0.565  Sum_probs=279.5

Q ss_pred             CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      +++++|++||+++|.+.+..|..++++++|++|+|++|.+.+..|..++.+++|++|+|++|.+++.+|..++++++|++
T Consensus       161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  240 (968)
T PLN00113        161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH  240 (968)
T ss_pred             hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence            34444555555555544444444445555555555555444444444445555555555555444444444445555555


Q ss_pred             EEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc
Q 042887          239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN  318 (628)
Q Consensus       239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~  318 (628)
                      |++++|.+++.+|..+. .+++|+.|++++|++++..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus       241 L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        241 LDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             EECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence            55555544444444333 24455555555554444444444444555555555554444444444444555555555544


Q ss_pred             CCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccc
Q 042887          319 LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL  398 (628)
Q Consensus       319 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  398 (628)
                      +.+.      .+..+..+++|+.|++++|.+.+..+..+..+. +|+.|++++|++.+..|..+..+++|+.+++++|.+
T Consensus       320 ~~~~------~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l  392 (968)
T PLN00113        320 FTGK------IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL  392 (968)
T ss_pred             cCCc------CChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence            4331      122344455556666666655555555555443 555555555555555555555444555555555554


Q ss_pred             cccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchh-----------------
Q 042887          399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLM-----------------  461 (628)
Q Consensus       399 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-----------------  461 (628)
                      .+..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..|..+..+++|.                 
T Consensus       393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~  472 (968)
T PLN00113        393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF  472 (968)
T ss_pred             cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence            444444444555555555555555544454454455555555554444444443333332221                 


Q ss_pred             ---cccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCE
Q 042887          462 ---TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKE  538 (628)
Q Consensus       462 ---~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  538 (628)
                         .+ +.|++++|++.+..|..+.++++|++|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.
T Consensus       473 ~~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  551 (968)
T PLN00113        473 GSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ  551 (968)
T ss_pred             ccccc-eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence               11 77899999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCcccCCCCCCCCCCC
Q 042887          539 LDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHF  608 (628)
Q Consensus       539 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~l~l~~c~~  608 (628)
                      |+|++|++++.+|..+.++++|+.|++++|+++|.+|..+.+.++....+.||+.+|++.+....++|..
T Consensus       552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~  621 (968)
T PLN00113        552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKR  621 (968)
T ss_pred             EECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCcc
Confidence            9999999999999999999999999999999999999999999888899999999998766556778864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.4e-51  Score=470.06  Aligned_cols=427  Identities=34%  Similarity=0.544  Sum_probs=384.7

Q ss_pred             ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL  236 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L  236 (628)
                      +.+.+++|++|||++|.+.+..|..++++++|++|++++|.+.+..|..|+++++|++|+|++|.+.+..|..++++++|
T Consensus       135 p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (968)
T PLN00113        135 PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL  214 (968)
T ss_pred             CccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence            44568899999999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             CEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccC
Q 042887          237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK  316 (628)
Q Consensus       237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  316 (628)
                      ++|++++|.+++.+|..+. .+++|++|++++|++++..|..++++++|++|++++|++++..|..+..+++|++|++++
T Consensus       215 ~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             cEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence            9999999999988998876 499999999999999999999999999999999999999998999999999999999999


Q ss_pred             CcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccc
Q 042887          317 NNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYN  396 (628)
Q Consensus       317 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  396 (628)
                      |.+.+      ..+..+.++++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus       294 n~l~~------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        294 NSLSG------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             Ceecc------CCChhHcCCCCCcEEECCCCccCCcCChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence            99876      3445677889999999999999999888888887 8999999999999999999999999999999999


Q ss_pred             cccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCcc
Q 042887          397 QLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGG  476 (628)
Q Consensus       397 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~  476 (628)
                      ++.+..|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|    +.|++++|.+.+
T Consensus       367 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L----~~L~Ls~N~l~~  442 (968)
T PLN00113        367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV----YFLDISNNNLQG  442 (968)
T ss_pred             eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC----CEEECcCCcccC
Confidence            9999999999999999999999999999999999999999999999999999999999998888    777888888776


Q ss_pred             ccchhhhccC-----------------------CCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCC
Q 042887          477 SIPLEVGNLR-----------------------NLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTL  533 (628)
Q Consensus       477 ~~~~~~~~l~-----------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  533 (628)
                      ..+..+..++                       +|+.|++++|++++..|..+..+++|+.|++++|++.+.+|..+..+
T Consensus       443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  522 (968)
T PLN00113        443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC  522 (968)
T ss_pred             ccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence            6665544444                       45556666666666777777888889999999999998899999999


Q ss_pred             CCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCC-CCCCCCCcccccCCCCCc
Q 042887          534 KSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK-GVFGNRTGIHLIGNERLC  595 (628)
Q Consensus       534 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c  595 (628)
                      ++|++|+|++|.+++.+|..|..+++|+.||+++|++++.+|.. ..+.+++.+++++|+..+
T Consensus       523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999999999999999999999999999999999888753 456788899999997654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2e-44  Score=354.19  Aligned_cols=374  Identities=22%  Similarity=0.244  Sum_probs=259.9

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887          164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS  243 (628)
Q Consensus       164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~  243 (628)
                      .+.||+|+|++....+..|.++++|+++++.+|.++ .+|.-.....+|+.|+|.+|.|+.+..+.+..++.|+.||||.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            344555555555555555555555555555555554 3444333344455555555555544444455555555555555


Q ss_pred             ccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcC
Q 042887          244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTES  323 (628)
Q Consensus       244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  323 (628)
                      |.|+ ++|...|-.-.++++|+|++|.|+....+.|.++.+|.+|.|+.|+|+..++..|.++++|+.|+|..|+|    
T Consensus       159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i----  233 (873)
T KOG4194|consen  159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI----  233 (873)
T ss_pred             chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce----
Confidence            5554 44444443344455555555555544445555555555555555555544444455555555555555544    


Q ss_pred             CCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCC
Q 042887          324 TSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIP  403 (628)
Q Consensus       324 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  403 (628)
                                                .....-.|..+. +++.|.+..|.+...-...|-.+.++++|+|+.|++.....
T Consensus       234 --------------------------rive~ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~  286 (873)
T KOG4194|consen  234 --------------------------RIVEGLTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE  286 (873)
T ss_pred             --------------------------eeehhhhhcCch-hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence                                      333333334443 56666666666666666778888999999999999988888


Q ss_pred             cCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhh
Q 042887          404 HAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG  483 (628)
Q Consensus       404 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~  483 (628)
                      .++.++++|+.|++|+|.|...-++++...++|+.|+|++|+|+...+..|..+..|    +.|+|++|++...-...|.
T Consensus       287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L----e~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL----EELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh----hhhcccccchHHHHhhHHH
Confidence            889999999999999999998888899999999999999999998888888888888    7889999999977778899


Q ss_pred             ccCCCCEeeCcCCcCcccCC---ccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCC
Q 042887          484 NLRNLAEFDLSENHFSNEIP---VTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFL  560 (628)
Q Consensus       484 ~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  560 (628)
                      .+++|++|||++|.++..+.   ..|.++++|+.|++.+|++..+...+|.++++|++|||.+|.|..+-|++|..+ .|
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L  441 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL  441 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hh
Confidence            99999999999999886543   457789999999999999997777889999999999999999998889999998 89


Q ss_pred             CeEeccCCcCcccCC
Q 042887          561 AYLNLSYNHFEGEVP  575 (628)
Q Consensus       561 ~~L~ls~N~l~~~~p  575 (628)
                      ++|-++.-.|-.+..
T Consensus       442 k~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  442 KELVMNSSSFLCDCQ  456 (873)
T ss_pred             hhhhhcccceEEecc
Confidence            998887665554433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-44  Score=351.14  Aligned_cols=396  Identities=22%  Similarity=0.248  Sum_probs=294.8

Q ss_pred             ccEEEccCCccccccchhhhCC--CCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          164 LEMIDVGDNQLIGKFPDFIANF--SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       164 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      -..||.+++.+.......+.++  +.-+.||+|+|++..+.+..|.++++|+.+++..|.++ .+|.......+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            3456777766654333333322  23334555555555555555555555555555555555 44544444444555555


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT  321 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~  321 (628)
                      .+|.|+                         .+....++.++.|+.|||+.|.|+.+....|..-.++++|+|++|+|+.
T Consensus       133 ~~N~I~-------------------------sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~  187 (873)
T KOG4194|consen  133 RHNLIS-------------------------SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT  187 (873)
T ss_pred             eccccc-------------------------cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc
Confidence            555554                         4444444445555555555555555544455555555555555555555


Q ss_pred             cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccccc
Q 042887          322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGT  401 (628)
Q Consensus       322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  401 (628)
                      +..+.|      ..+.+|..|.|+.|+++...+..|..++ .|+.|++..|+|.-.-...|.++++|+.|.+..|+|...
T Consensus       188 l~~~~F------~~lnsL~tlkLsrNrittLp~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL  260 (873)
T KOG4194|consen  188 LETGHF------DSLNSLLTLKLSRNRITTLPQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL  260 (873)
T ss_pred             cccccc------cccchheeeecccCcccccCHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence            444332      2233455555566666666666777666 899999999999866567899999999999999999988


Q ss_pred             CCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchh
Q 042887          402 IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE  481 (628)
Q Consensus       402 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~  481 (628)
                      -..+|..+.++++|+|+.|++...--.++.+++.|+.|++|+|.|+...++.+..+++|    ++|+|++|+|+...+..
T Consensus       261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL----~~LdLs~N~i~~l~~~s  336 (873)
T KOG4194|consen  261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL----KELDLSSNRITRLDEGS  336 (873)
T ss_pred             cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc----eeEeccccccccCChhH
Confidence            88899999999999999999998888999999999999999999999999999999999    89999999999888999


Q ss_pred             hhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCc---cccCCCCCCEEECCCCcccccCchhhhccc
Q 042887          482 VGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPL---SLKTLKSIKELDLSRNNLSGQIPKYLENLL  558 (628)
Q Consensus       482 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  558 (628)
                      |..+..|++|+|++|.+...-...|.++++|++|||++|.++..+.+   .|.++++|+.|++.+|+|..+...+|.+++
T Consensus       337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~  416 (873)
T KOG4194|consen  337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE  416 (873)
T ss_pred             HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCc
Confidence            99999999999999999977778899999999999999999976543   588899999999999999988888999999


Q ss_pred             CCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCcc
Q 042887          559 FLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCG  596 (628)
Q Consensus       559 ~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~  596 (628)
                      .|++|||.+|.|-..-|..-.-..++.+.+..-.++|.
T Consensus       417 ~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD  454 (873)
T KOG4194|consen  417 ALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCD  454 (873)
T ss_pred             ccceecCCCCcceeecccccccchhhhhhhcccceEEe
Confidence            99999999999987666432223677777777777884

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.9e-42  Score=324.03  Aligned_cols=412  Identities=27%  Similarity=0.404  Sum_probs=299.6

Q ss_pred             ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL  236 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L  236 (628)
                      .+.++..+++|++++|++. ..|.+++.+..++.|+.++|++. .+|..+..+.+|+.|+.++|.+. ..|+.++.+..|
T Consensus        63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l  139 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL  139 (565)
T ss_pred             hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence            3456677788888888877 56667778888888888888877 67777888888888888888877 577777888888


Q ss_pred             CEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccC
Q 042887          237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK  316 (628)
Q Consensus       237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  316 (628)
                      +.|+..+|+++ ..|.+++. +.+|..+++.+|+++...|..+. ++.|++||..+|-++ ..|..++.+.+|..|++..
T Consensus       140 ~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  140 EDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRR  215 (565)
T ss_pred             hhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhh
Confidence            88888888887 67777765 77777778888877754444444 777788887777776 4455677777777777777


Q ss_pred             CcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccc
Q 042887          317 NNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYN  396 (628)
Q Consensus       317 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  396 (628)
                      |++...        ..|..|+.|++++++.|++.........++. ++.+||+.+|++. ..|+.+.-+.+|..||+++|
T Consensus       216 Nki~~l--------Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~-~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  216 NKIRFL--------PEFPGCSLLKELHVGENQIEMLPAEHLKHLN-SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNN  285 (565)
T ss_pred             cccccC--------CCCCccHHHHHHHhcccHHHhhHHHHhcccc-cceeeeccccccc-cCchHHHHhhhhhhhcccCC
Confidence            777543        2455666677777777766555444444444 6667777777776 55666666677777777777


Q ss_pred             cccccCCcCCCCCCCCCeEecccCcccc----------------------------------------------------
Q 042887          397 QLTGTIPHAIGELKNLQGLALVRNSLRG----------------------------------------------------  424 (628)
Q Consensus       397 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------------------------------------  424 (628)
                      .|+ ..|..++++ +|+.|-+.+|.++.                                                    
T Consensus       286 ~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~  363 (565)
T KOG0472|consen  286 DIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT  363 (565)
T ss_pred             ccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence            776 345566666 66666666665541                                                    


Q ss_pred             ------------ccCccccCCC---CCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCC
Q 042887          425 ------------TIPDTLGNLT---LLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLA  489 (628)
Q Consensus       425 ------------~~~~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~  489 (628)
                                  .+|+....-.   -....+++.|++. ..|..+..+..+.   +.+.+++|.++ .+|..++.+++|.
T Consensus       364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv---T~l~lsnn~is-fv~~~l~~l~kLt  438 (565)
T KOG0472|consen  364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV---TDLVLSNNKIS-FVPLELSQLQKLT  438 (565)
T ss_pred             hhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH---HHHHhhcCccc-cchHHHHhhhcce
Confidence                        1111111111   1334444555554 4444433333332   34667777776 6777889999999


Q ss_pred             EeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCc
Q 042887          490 EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH  569 (628)
Q Consensus       490 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~  569 (628)
                      .|+|++|.+. .+|..++.+..|+.|++++|++. ..|.....+..|+.+-.++|++....|+.+.+|..|..||+.+|.
T Consensus       439 ~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd  516 (565)
T KOG0472|consen  439 FLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND  516 (565)
T ss_pred             eeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence            9999999987 78888999999999999999998 788888888889999889999998888889999999999999999


Q ss_pred             CcccCCCCCCCCCCCcccccCCCCC
Q 042887          570 FEGEVPRKGVFGNRTGIHLIGNERL  594 (628)
Q Consensus       570 l~~~~p~~~~~~~l~~~~~~~n~~~  594 (628)
                      +...+|..|.+.+++++.+.|||+-
T Consensus       517 lq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  517 LQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhCChhhccccceeEEEecCCccC
Confidence            9999999999999999999999875

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.8e-40  Score=310.64  Aligned_cols=429  Identities=27%  Similarity=0.376  Sum_probs=351.7

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH  242 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~  242 (628)
                      .++.+++++|.+.. ..+.+.++..|.+|++++|++. ..|.+++.+..++.|+.++|+++ .+|..++.+.+|..|+.+
T Consensus        46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            47889999999985 4456889999999999999998 78889999999999999999998 899999999999999999


Q ss_pred             cccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCc
Q 042887          243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTE  322 (628)
Q Consensus       243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  322 (628)
                      +|.+. ++|++++. +-.++.++..+|+++ ..|.++..+.+|..+++.+|++....+.... ++.|++||...|.++.+
T Consensus       123 ~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tl  198 (565)
T KOG0472|consen  123 SNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETL  198 (565)
T ss_pred             cccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcC
Confidence            99999 89999986 999999999999999 6788899999999999999999977776665 99999999999999875


Q ss_pred             CCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccC
Q 042887          323 STSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTI  402 (628)
Q Consensus       323 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  402 (628)
                      ++       .++.+.+|+.|++..|++...+  .|++.. .+.+++++.|++.-...+..+++.++.+||+..|+++ ..
T Consensus       199 P~-------~lg~l~~L~~LyL~~Nki~~lP--ef~gcs-~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~  267 (565)
T KOG0472|consen  199 PP-------ELGGLESLELLYLRRNKIRFLP--EFPGCS-LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV  267 (565)
T ss_pred             Ch-------hhcchhhhHHHHhhhcccccCC--CCCccH-HHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence            54       4777889999999999997654  555554 7899999999998444445669999999999999998 78


Q ss_pred             CcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccC-------------------------------
Q 042887          403 PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP-------------------------------  451 (628)
Q Consensus       403 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------------  451 (628)
                      |+.++-+.+|.+||+|+|.++ ..|.+++++ +|+.|.+.+|.+...--                               
T Consensus       268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e  345 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE  345 (565)
T ss_pred             chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence            999999999999999999999 578889999 99999999998742100                               


Q ss_pred             -------CcccCCcchh-------------------------cccceEEcCCCcCccccchhhhccCCCCE-eeCcCCcC
Q 042887          452 -------SSLGNCQNLM-------------------------TLSRLLDLSGNLLGGSIPLEVGNLRNLAE-FDLSENHF  498 (628)
Q Consensus       452 -------~~~~~l~~L~-------------------------~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l  498 (628)
                             ..+.......                         ......+++.|++. .+|..+..+..+.+ +++++|.+
T Consensus       346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence                   0010000000                         11134666667666 45655555544443 44555555


Q ss_pred             cccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC-C
Q 042887          499 SNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR-K  577 (628)
Q Consensus       499 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~-~  577 (628)
                      . .+|..++.+++|..|+|++|.+. .+|..++.+..|+.||+|+|++. ..|+.+..+..|+.+-.++|++....|. .
T Consensus       425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l  501 (565)
T KOG0472|consen  425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL  501 (565)
T ss_pred             c-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence            4 78888899999999999999987 78888999999999999999998 7888888888888888888998765555 4


Q ss_pred             CCCCCCCcccccCCC--------CCcccCCCCCCCCCCCCCCCcce
Q 042887          578 GVFGNRTGIHLIGNE--------RLCGGLEELHLPSCHFGRPRITR  615 (628)
Q Consensus       578 ~~~~~l~~~~~~~n~--------~~c~~~~~l~l~~c~~~~~~~~~  615 (628)
                      ..+.+++++++..|.        ..|.++.+|.+.+++|+.||-..
T Consensus       502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~i  547 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQI  547 (565)
T ss_pred             hhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCHHHH
Confidence            668889999998874        33567889999999999887543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=5e-38  Score=311.26  Aligned_cols=366  Identities=24%  Similarity=0.377  Sum_probs=249.0

Q ss_pred             cCcccEEEccCCccc-cccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEE
Q 042887          161 LLKLEMIDVGDNQLI-GKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEII  239 (628)
Q Consensus       161 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L  239 (628)
                      ++-++-.|+++|.++ +..|+....++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-+.+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            445678899999998 678899999999999999998887 78999999999999999999987 577788889999999


Q ss_pred             EeecccCcc-cCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc
Q 042887          240 SLHSNRFEG-SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN  318 (628)
Q Consensus       240 ~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~  318 (628)
                      ++..|++.. -+|.++|. +..|+.||||+|+++ ..|..+...+++-.|+|++|+|..++...|.+++.|-.||||+|+
T Consensus        84 ~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            999998853 57888885 999999999999998 778889999999999999999998888888899999999999999


Q ss_pred             CCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccc
Q 042887          319 LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL  398 (628)
Q Consensus       319 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  398 (628)
                      +...++       ....+..|++|.|++|.+.......++.+. +|++|.+++.+-+                       
T Consensus       162 Le~LPP-------Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt-sL~vLhms~TqRT-----------------------  210 (1255)
T KOG0444|consen  162 LEMLPP-------QIRRLSMLQTLKLSNNPLNHFQLRQLPSMT-SLSVLHMSNTQRT-----------------------  210 (1255)
T ss_pred             hhhcCH-------HHHHHhhhhhhhcCCChhhHHHHhcCccch-hhhhhhcccccch-----------------------
Confidence            876543       355667788888888876544444333333 4444444443322                       


Q ss_pred             cccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCcccc
Q 042887          399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSI  478 (628)
Q Consensus       399 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~  478 (628)
                      ..-+|..+..+.+|..+|+|+|.+. ..|+.+-++++|+.|+||+|+|+ ......+...++    +.|++|.|+++ .+
T Consensus       211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l----EtLNlSrNQLt-~L  283 (1255)
T KOG0444|consen  211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL----ETLNLSRNQLT-VL  283 (1255)
T ss_pred             hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh----hhhccccchhc-cc
Confidence            1123444555555555555555554 45555555555555555555555 233333334444    44555555555 45


Q ss_pred             chhhhccCCCCEeeCcCCcCcc-cCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcc
Q 042887          479 PLEVGNLRNLAEFDLSENHFSN-EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL  557 (628)
Q Consensus       479 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  557 (628)
                      |..+..+++|+.|++.+|+++- -+|..++.+..|+.+..++|.+. ..|+.+..+..|+.|.|++|++. ..|+.+.-+
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL  361 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLL  361 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhc
Confidence            5555555555555555555542 24555555555555555555554 55555555555555555555554 455555555


Q ss_pred             cCCCeEeccCCcC
Q 042887          558 LFLAYLNLSYNHF  570 (628)
Q Consensus       558 ~~L~~L~ls~N~l  570 (628)
                      +.|+.||+..|+=
T Consensus       362 ~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  362 PDLKVLDLRENPN  374 (1255)
T ss_pred             CCcceeeccCCcC
Confidence            5555555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=315.23  Aligned_cols=403  Identities=28%  Similarity=0.397  Sum_probs=291.0

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH  242 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~  242 (628)
                      +|++||+|+|++. ..|..+..+.+|+.|+++.|.|. ..|.+...+.+|++|.|.+|.+. ..|..+..+.+|++|+++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            3899999999986 68888999999999999999998 67888999999999999999887 789999999999999999


Q ss_pred             cccCcccCChhhhhCCCCCcEEecccC-------------------cccccccccccCCCCCCEEEcccccceeeccccc
Q 042887          243 SNRFEGSLPLNIGFNIPNVNFLSVGQN-------------------NFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDF  303 (628)
Q Consensus       243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N-------------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  303 (628)
                      +|++. .+|..+.. +..++.+..++|                   .+.+.++.....++.  .|+|++|.+.   ...+
T Consensus       123 ~N~f~-~~Pl~i~~-lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dl  195 (1081)
T KOG0618|consen  123 FNHFG-PIPLVIEV-LTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDL  195 (1081)
T ss_pred             hhccC-CCchhHHh-hhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhh
Confidence            99997 78877764 666666666666                   222222222222222  3455555443   1123


Q ss_pred             ccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhh
Q 042887          304 NRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIK  383 (628)
Q Consensus       304 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  383 (628)
                      ..+++|+.|....|++..+..          .-++++.|+.++|.+.......   .+.+++.+++++|++++ +|+++.
T Consensus       196 s~~~~l~~l~c~rn~ls~l~~----------~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~-lp~wi~  261 (1081)
T KOG0618|consen  196 SNLANLEVLHCERNQLSELEI----------SGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSN-LPEWIG  261 (1081)
T ss_pred             hhccchhhhhhhhcccceEEe----------cCcchheeeeccCcceeecccc---ccccceeeecchhhhhc-chHHHH
Confidence            334444444444444433211          1245566666666655332221   22367777777777774 347777


Q ss_pred             ccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcch---
Q 042887          384 NLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNL---  460 (628)
Q Consensus       384 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---  460 (628)
                      .+.+|+.++..+|.+. ..|..+....+|+.|++.+|.+. -+|+....+++|++|+|..|+|. ..|+.+....+.   
T Consensus       262 ~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~  338 (1081)
T KOG0618|consen  262 ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLN  338 (1081)
T ss_pred             hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHH
Confidence            7777777777777775 55666666677777777777776 45555666777777777777776 333322111110   


Q ss_pred             -------------------hcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCce
Q 042887          461 -------------------MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS  521 (628)
Q Consensus       461 -------------------~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  521 (628)
                                         ...++.|.+.+|.+++..-+.+.++.+|+.|+|++|++.......+.+++.|+.|+||+|+
T Consensus       339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk  418 (1081)
T KOG0618|consen  339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK  418 (1081)
T ss_pred             HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence                               0112678899999998888889999999999999999986666778899999999999999


Q ss_pred             eeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcc-cCCCCCCCCCCCcccccCCCCCc
Q 042887          522 FSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG-EVPRKGVFGNRTGIHLIGNERLC  595 (628)
Q Consensus       522 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~~~l~~~~~~~n~~~c  595 (628)
                      ++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++. .+|.....++++.++++||++.-
T Consensus       419 L~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  419 LT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             hh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence            99 88899999999999999999998 566 78899999999999999986 45555445899999999999744

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=9.7e-36  Score=295.10  Aligned_cols=367  Identities=23%  Similarity=0.360  Sum_probs=269.3

Q ss_pred             CCCCCEEecccCcCc-ccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcE
Q 042887          185 FSALEAIDISANMLG-GRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNF  263 (628)
Q Consensus       185 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  263 (628)
                      ++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+. .++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhHH
Confidence            344455566666665 345555666666666666666555 45666666666666666666555 3333333 2555555


Q ss_pred             EecccCcccc-cccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCcee
Q 042887          264 LSVGQNNFTG-SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEML  342 (628)
Q Consensus       264 L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L  342 (628)
                      +.+.+|++.. -+|..+-.+..|+.|||++|++. ..|..+....++-.|+||+|+|.+                     
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Iet---------------------  140 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIET---------------------  140 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcccc---------------------
Confidence            5555555542 23444444555555555555554 234444444445555555555444                     


Q ss_pred             ecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCcc
Q 042887          343 YLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSL  422 (628)
Q Consensus       343 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  422 (628)
                               ++-..+.++. .|-.||+++|++. .+|..+..+..|++|.+++|.+.-.--..+..+++|++|++++.+-
T Consensus       141 ---------IPn~lfinLt-DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  141 ---------IPNSLFINLT-DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             ---------CCchHHHhhH-hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence                     4334444444 5677778888776 6677889999999999999987533233455678899999998654


Q ss_pred             c-cccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCccc
Q 042887          423 R-GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNE  501 (628)
Q Consensus       423 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  501 (628)
                      + .-+|.++..+.+|..+|+|.|.+. ..|+.+..+.+|    +.|+||+|+|+ .+....+...+|++|+||.|+++ .
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L----rrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~  282 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL----RRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-V  282 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh----heeccCcCcee-eeeccHHHHhhhhhhccccchhc-c
Confidence            4 357889999999999999999998 899999999999    88999999998 45556666789999999999999 8


Q ss_pred             CCccccCCCCCCeEECcCceeee-ecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCC
Q 042887          502 IPVTLSACTTLEYLHLQGNSFSG-SLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVF  580 (628)
Q Consensus       502 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~  580 (628)
                      .|..+..+++|+.|++.+|+++- -+|..++.+.+|+.+..++|.+. ..|+.+..+..|+.|.|++|++.+.+..+..+
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL  361 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLL  361 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhc
Confidence            99999999999999999999873 57899999999999999999998 89999999999999999999999877788889


Q ss_pred             CCCCcccccCCCCCc
Q 042887          581 GNRTGIHLIGNERLC  595 (628)
Q Consensus       581 ~~l~~~~~~~n~~~c  595 (628)
                      +.+..+++..||.+-
T Consensus       362 ~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  362 PDLKVLDLRENPNLV  376 (1255)
T ss_pred             CCcceeeccCCcCcc
Confidence            999999999998654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=4.8e-33  Score=288.54  Aligned_cols=413  Identities=25%  Similarity=0.356  Sum_probs=328.3

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH  242 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~  242 (628)
                      .++.|+++.|-+....-+...+..+|+.||+++|++. ..|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|.|.
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            3888999999887544455666667999999999997 88999999999999999999998 789999999999999999


Q ss_pred             cccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccc-------------------cceeeccccc
Q 042887          243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKN-------------------HFSGQVKIDF  303 (628)
Q Consensus       243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-------------------~i~~~~~~~~  303 (628)
                      .|.+. .+|..+.. +.+|+.|+++.|++. ..|..+..++.++.+..++|                   .+.+......
T Consensus       100 ~n~l~-~lP~~~~~-lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i  176 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISE-LKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI  176 (1081)
T ss_pred             cchhh-cCchhHHh-hhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence            99998 89998875 999999999999998 56666666666666666655                   3333333333


Q ss_pred             ccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhh
Q 042887          304 NRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIK  383 (628)
Q Consensus       304 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  383 (628)
                      ..++.  .|+|++|.+..         ..+.++.+|+.+....|++......     .++++.|+.++|.+....+.  .
T Consensus       177 ~~l~~--~ldLr~N~~~~---------~dls~~~~l~~l~c~rn~ls~l~~~-----g~~l~~L~a~~n~l~~~~~~--p  238 (1081)
T KOG0618|consen  177 YNLTH--QLDLRYNEMEV---------LDLSNLANLEVLHCERNQLSELEIS-----GPSLTALYADHNPLTTLDVH--P  238 (1081)
T ss_pred             hhhhe--eeecccchhhh---------hhhhhccchhhhhhhhcccceEEec-----CcchheeeeccCcceeeccc--c
Confidence            33333  47777777652         2355667778888888776543321     13788899999988844322  2


Q ss_pred             ccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcc
Q 042887          384 NLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTL  463 (628)
Q Consensus       384 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l  463 (628)
                      .-.+|+++++++|++.+ .|++++.+.+|+.++..+|+++ ..|..+...++|+.|.+..|.+. .+|....++..|   
T Consensus       239 ~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL---  312 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL---  312 (1081)
T ss_pred             ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee---
Confidence            23578999999999985 5699999999999999999996 78888899999999999999998 777788888888   


Q ss_pred             cceEEcCCCcCccccchhhh-------------------------ccCCCCEeeCcCCcCcccCCccccCCCCCCeEECc
Q 042887          464 SRLLDLSGNLLGGSIPLEVG-------------------------NLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQ  518 (628)
Q Consensus       464 ~~~L~Ls~N~l~~~~~~~~~-------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  518 (628)
                       +.|+|..|+|....+..+.                         .++.|+.|++.+|.+++..-..+.+++.|+.|+|+
T Consensus       313 -~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs  391 (1081)
T KOG0618|consen  313 -RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS  391 (1081)
T ss_pred             -eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence             8899999999843222111                         13457788999999998777788899999999999


Q ss_pred             CceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCc---
Q 042887          519 GNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLC---  595 (628)
Q Consensus       519 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c---  595 (628)
                      +|++.......+.+++.|++|+||+|+++ .+|+.+..+..|++|...+|++.. .|+....+.++.+|++.|.-.-   
T Consensus       392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fPe~~~l~qL~~lDlS~N~L~~~~l  469 (1081)
T KOG0618|consen  392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FPELAQLPQLKVLDLSCNNLSEVTL  469 (1081)
T ss_pred             ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-chhhhhcCcceEEecccchhhhhhh
Confidence            99998555556889999999999999999 788999999999999999999984 5588889999999999874221   


Q ss_pred             ------ccCCCCCCCCCC
Q 042887          596 ------GGLEELHLPSCH  607 (628)
Q Consensus       596 ------~~~~~l~l~~c~  607 (628)
                            ..+++|+++++.
T Consensus       470 ~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  470 PEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhCCCcccceeeccCCc
Confidence                  456777887765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.95  E-value=4.8e-30  Score=242.33  Aligned_cols=277  Identities=18%  Similarity=0.194  Sum_probs=174.0

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeeccc-ccCcccCCcCccCCCCCCEEEe
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE-NNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      +...++|..|+|+.+.|.+|+.+++|++||||+|.|+.+.|++|.++++|..|-+.+ |+|+....+.|.+|..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            467788888888888888888888888888888888888888888888877776666 8888766677888888888888


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccce------------eecccccccCCCC
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFS------------GQVKIDFNRLSNL  309 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~------------~~~~~~~~~l~~L  309 (628)
                      .-|++. .++.+.++.+++|..|.+-+|.+..+--.+|..+..++++.+..|.+-            ...+..++..+..
T Consensus       148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            888887 788888888888888888888888555557888888888888877632            1122223333333


Q ss_pred             CEEEccCCcCCCcCCCCccccccccCCCCCc-eeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCc
Q 042887          310 SRLFLSKNNLGTESTSDLDFLTLLTNCSQME-MLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNI  388 (628)
Q Consensus       310 ~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L  388 (628)
                      .-..+.++++..+....|..     ....+. .+....+.........|..++ +|+.|++++|+++++-+.+|..+..+
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c-----~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~a~l  300 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLC-----SLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGAAEL  300 (498)
T ss_pred             chHHHHHHHhcccchhhhhh-----hHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcchhhh
Confidence            33333333333322221110     000110 111112222222333444444 55556666666655555556555666


Q ss_pred             CeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccc
Q 042887          389 NAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNL  446 (628)
Q Consensus       389 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  446 (628)
                      ++|.+..|++..+....|.++..|+.|+|++|+|+...|.+|..+.+|.+|++-.|.+
T Consensus       301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            6666666655544445555555666666666666555555555555555555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.94  E-value=8.9e-29  Score=233.77  Aligned_cols=301  Identities=19%  Similarity=0.205  Sum_probs=239.0

Q ss_pred             EEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec-cc
Q 042887          167 IDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS-NR  245 (628)
Q Consensus       167 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~-n~  245 (628)
                      .|=++-.++ .+|..+.  ..-.+++|..|.|+.+.|.+|+.+++|+.||||+|+|+.+.|++|.++++|.+|-+.+ |+
T Consensus        51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            444555555 4554332  3678899999999999999999999999999999999999999999999998888777 99


Q ss_pred             CcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCC
Q 042887          246 FEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTS  325 (628)
Q Consensus       246 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  325 (628)
                      |+ .+|...|.++..|+.|.+..|++..+..+.|..+++|..|.+.+|.+..+....|..+..++.+.+..|.+.....-
T Consensus       128 I~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  128 IT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             hh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence            99 99999999999999999999999999999999999999999999999988888999999999999999974332110


Q ss_pred             C------ccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCc-hhhhccCCcCeeeeccccc
Q 042887          326 D------LDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIP-SEIKNLVNINAFGVEYNQL  398 (628)
Q Consensus       326 ~------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l  398 (628)
                      .      ...+..++...-.....+.+.++..+....+......+..--.+.+...+..| ..|..+++|+.+++++|+|
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence            0      01112233333444555666666666655554432222111122222222333 4699999999999999999


Q ss_pred             cccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCc
Q 042887          399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLG  475 (628)
Q Consensus       399 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~  475 (628)
                      +++-+.+|.++.++++|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+..|    ..|+|-.|.+.
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l----~~l~l~~Np~~  359 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL----STLNLLSNPFN  359 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee----eeeehccCccc
Confidence            99999999999999999999999998778889999999999999999999999999888888    67788777664

>PLN03210 Resistant to P

Probab=99.93  E-value=2.9e-24  Score=249.11  Aligned_cols=341  Identities=18%  Similarity=0.236  Sum_probs=257.2

Q ss_pred             ccchhhhCCCCCCEEecccCc------CcccccccccCCC-CCCEeecccccCcccCCcCccCCCCCCEEEeecccCccc
Q 042887          177 KFPDFIANFSALEAIDISANM------LGGRIPDSLCQLR-SLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGS  249 (628)
Q Consensus       177 ~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~-~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~  249 (628)
                      ..+++|.++++|+.|.+..+.      +...+|..|..++ +|+.|++.++.++ .+|..| ...+|++|++++|.+. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            456789999999999997654      3334677777775 6999999999987 678777 5789999999999998 7


Q ss_pred             CChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc-CCCcCCCCcc
Q 042887          250 LPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN-LGTESTSDLD  328 (628)
Q Consensus       250 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  328 (628)
                      ++..+. .+++|+.|+|+++.....+| .++.+++|++|++++|......|..+..+++|+.|++++|. +..++.    
T Consensus       626 L~~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~----  699 (1153)
T PLN03210        626 LWDGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT----  699 (1153)
T ss_pred             cccccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC----
Confidence            877765 59999999999876554566 48889999999999987666778889999999999999864 443322    


Q ss_pred             ccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccc-------cc
Q 042887          329 FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT-------GT  401 (628)
Q Consensus       329 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-------~~  401 (628)
                         . .++++|+.|++++|......    +....+++.|++++|.+. .+|..+ .+++|+.|++.++...       ..
T Consensus       700 ---~-i~l~sL~~L~Lsgc~~L~~~----p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l  769 (1153)
T PLN03210        700 ---G-INLKSLYRLNLSGCSRLKSF----PDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPL  769 (1153)
T ss_pred             ---c-CCCCCCCEEeCCCCCCcccc----ccccCCcCeeecCCCccc-cccccc-cccccccccccccchhhcccccccc
Confidence               1 25788999999988643332    233458899999999986 445544 5677888877764321       11


Q ss_pred             CCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchh
Q 042887          402 IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE  481 (628)
Q Consensus       402 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~  481 (628)
                      .+..+...++|+.|++++|...+.+|..+.++++|+.|++++|..-+.+|..+ ++++|    +.|++++|.....+|..
T Consensus       770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL----~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL----ESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc----CEEECCCCCcccccccc
Confidence            12223345689999999988777788889999999999998875444666655 56666    78899987654444432


Q ss_pred             hhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCc
Q 042887          482 VGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNN  545 (628)
Q Consensus       482 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  545 (628)
                         .++|++|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       845 ---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 ---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence               367889999999987 678888889999999998854434677778888899999988885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=9.1e-24  Score=244.97  Aligned_cols=341  Identities=19%  Similarity=0.246  Sum_probs=258.2

Q ss_pred             cccccccCCCCCCEeeccccc------CcccCCcCccCCC-CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccc
Q 042887          201 RIPDSLCQLRSLNYLSISENN------FSCKLPLSIWNIS-SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTG  273 (628)
Q Consensus       201 ~~~~~~~~l~~L~~L~Ls~N~------i~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  273 (628)
                      ..+.+|.++++|+.|.+..+.      +...+|..|..++ +|+.|++.++.++ .+|..+  ...+|+.|++++|++. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence            346679999999999997664      3335677777764 6999999999998 888876  3789999999999998 


Q ss_pred             cccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCccccc
Q 042887          274 SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVF  353 (628)
Q Consensus       274 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  353 (628)
                      ..+..+..+++|+.|+++++......| .+..+++|++|++++|....      ..+..+.++++|+.|++++|..-...
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~------~lp~si~~L~~L~~L~L~~c~~L~~L  697 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV------ELPSSIQYLNKLEDLDMSRCENLEIL  697 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc------ccchhhhccCCCCEEeCCCCCCcCcc
Confidence            567778899999999999876444445 47889999999999875432      34456778889999999987543333


Q ss_pred             chHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccc-------ccc
Q 042887          354 LRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLR-------GTI  426 (628)
Q Consensus       354 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~  426 (628)
                      +..+ .+ .+|+.|++++|...+.+|..   .++|+.|++++|.+. .+|..+ .+++|+.|++.++...       ...
T Consensus       698 p~~i-~l-~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~  770 (1153)
T PLN03210        698 PTGI-NL-KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLT  770 (1153)
T ss_pred             CCcC-CC-CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccc
Confidence            3333 33 37899999998765555543   467889999999887 455544 5788888888774322       122


Q ss_pred             CccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccc
Q 042887          427 PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTL  506 (628)
Q Consensus       427 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  506 (628)
                      +..+...++|+.|++++|.....+|..++++++|    +.|++++|...+.+|..+ ++++|+.|++++|.....+|.. 
T Consensus       771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L----~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-  844 (1153)
T PLN03210        771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL----EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-  844 (1153)
T ss_pred             hhhhhccccchheeCCCCCCccccChhhhCCCCC----CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-
Confidence            2233345789999999998777889889888888    889999875444666655 6889999999998655445443 


Q ss_pred             cCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC-cccccCchhhhcccCCCeEeccCCc
Q 042887          507 SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN-NLSGQIPKYLENLLFLAYLNLSYNH  569 (628)
Q Consensus       507 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ls~N~  569 (628)
                        .++|+.|+|++|.++ .+|.++..+++|+.|++++| ++. .+|..+..+++|+.+++++|.
T Consensus       845 --~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 --STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             --ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence              368999999999998 68888999999999999984 455 567777888899999998885

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.89  E-value=1.4e-22  Score=218.12  Aligned_cols=267  Identities=28%  Similarity=0.365  Sum_probs=141.1

Q ss_pred             CCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEe
Q 042887          186 SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLS  265 (628)
Q Consensus       186 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  265 (628)
                      ..-..|+++.|.++ .+|..+.  ++|+.|++++|+++ .+|..   .++|++|++++|+++ .+|..    .++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc----ccccceee
Confidence            34556777777776 4555554  36777777777776 34532   356666666666666 45531    34555666


Q ss_pred             cccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecc
Q 042887          266 VGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLN  345 (628)
Q Consensus       266 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~  345 (628)
                      +++|.++. +|..   .++|+.|++++|+++.+..    ..++|+.|++++|+++.++.                     
T Consensus       269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~---------------------  319 (788)
T PRK15387        269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA---------------------  319 (788)
T ss_pred             ccCCchhh-hhhc---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCC---------------------
Confidence            66665552 2221   1334455555555543221    12344444444444432110                     


Q ss_pred             cCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccc
Q 042887          346 TNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGT  425 (628)
Q Consensus       346 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  425 (628)
                                    .+..+                        +.|++++|++++ +|..   ..+|+.|++++|++++ 
T Consensus       320 --------------lp~~L------------------------~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-  356 (788)
T PRK15387        320 --------------LPSEL------------------------CKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-  356 (788)
T ss_pred             --------------Ccccc------------------------cccccccCcccc-cccc---ccccceEecCCCccCC-
Confidence                          01122                        333344444432 2211   1245556666665553 


Q ss_pred             cCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCcc
Q 042887          426 IPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVT  505 (628)
Q Consensus       426 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  505 (628)
                      +|..   ..+|+.|++++|+|+. +|...   .+|    +.|++++|++++ +|..   .++|+.|++++|+++. +|..
T Consensus       357 LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~L----~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l  420 (788)
T PRK15387        357 LPTL---PSELYKLWAYNNRLTS-LPALP---SGL----KELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML  420 (788)
T ss_pred             CCCC---Ccccceehhhcccccc-Ccccc---ccc----ceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc
Confidence            3322   2345555666666552 33322   223    556666666663 3322   2457777777777763 4432


Q ss_pred             ccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhc
Q 042887          506 LSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLEN  556 (628)
Q Consensus       506 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  556 (628)
                         ..+|+.|++++|+|+ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus       421 ---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        421 ---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             ---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence               235667777777776 56777777777777777777777666665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.89  E-value=1.4e-22  Score=217.98  Aligned_cols=265  Identities=25%  Similarity=0.309  Sum_probs=174.9

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      .+-..||+++|.++ .+|+.+.  ++|+.|++++|+++. +|.   .+++|++|++++|+++ .+|..   .++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence            45678999999998 5677665  489999999999984 554   3589999999999999 45643   468999999


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT  321 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~  321 (628)
                      ++|.++ .+|..    ..+|+.|++++|+++. +|..   .++|+.|++++|+++++.. .   ..+|+.|++++|.++.
T Consensus       270 s~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~Lp~-l---p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        270 FSNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA-L---PSELCKLWAYNNQLTS  336 (788)
T ss_pred             cCCchh-hhhhc----hhhcCEEECcCCcccc-cccc---ccccceeECCCCccccCCC-C---cccccccccccCcccc
Confidence            999998 67652    5689999999999994 4542   4789999999999986533 2   2468888999998875


Q ss_pred             cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccccc
Q 042887          322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGT  401 (628)
Q Consensus       322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  401 (628)
                      ++..          ..+|+.|++++|+++..                          |..   ..+|+.|++++|++.. 
T Consensus       337 LP~l----------p~~Lq~LdLS~N~Ls~L--------------------------P~l---p~~L~~L~Ls~N~L~~-  376 (788)
T PRK15387        337 LPTL----------PSGLQELSVSDNQLASL--------------------------PTL---PSELYKLWAYNNRLTS-  376 (788)
T ss_pred             cccc----------ccccceEecCCCccCCC--------------------------CCC---Ccccceehhhcccccc-
Confidence            4320          02455555555555432                          211   1234445555555552 


Q ss_pred             CCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchh
Q 042887          402 IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE  481 (628)
Q Consensus       402 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~  481 (628)
                      +|..   ..+|+.|++++|.+++ +|..   .++|+.|++++|++++ +|...   .+|    +.|++++|+|+ .+|..
T Consensus       377 LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L----~~L~Ls~NqLt-~LP~s  440 (788)
T PRK15387        377 LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGL----LSLSVYRNQLT-RLPES  440 (788)
T ss_pred             Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhh----hhhhhccCccc-ccChH
Confidence            3322   2356666666666663 3322   2456666666666653 34322   123    45566666665 45666


Q ss_pred             hhccCCCCEeeCcCCcCcccCCccc
Q 042887          482 VGNLRNLAEFDLSENHFSNEIPVTL  506 (628)
Q Consensus       482 ~~~l~~L~~L~Ls~N~l~~~~~~~~  506 (628)
                      +.++++|+.|+|++|++++..+..+
T Consensus       441 l~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        441 LIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             HhhccCCCeEECCCCCCCchHHHHH
Confidence            6666666666666666665544444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=1.7e-20  Score=203.45  Aligned_cols=119  Identities=20%  Similarity=0.366  Sum_probs=72.5

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH  242 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~  242 (628)
                      +...|+++++.++. +|..+.  ++|+.|+|++|+++ .+|..+.  .+|++|++++|+++ .+|..+.  .+|+.|+|+
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            45677777777773 454443  46777777777777 3444443  46777777777776 4555443  357777777


Q ss_pred             cccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccccccee
Q 042887          243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG  297 (628)
Q Consensus       243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  297 (628)
                      +|.++ .+|..+.   .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++.
T Consensus       250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence            77776 6665542   45666666666666 3444332  355666666665553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=2.4e-20  Score=202.39  Aligned_cols=247  Identities=23%  Similarity=0.368  Sum_probs=133.4

Q ss_pred             CCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEe
Q 042887          186 SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLS  265 (628)
Q Consensus       186 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  265 (628)
                      .+...|+++++.++ .+|..+.  ++|+.|+|++|+++ .+|..+.  ++|++|++++|.++ .+|..+   .++|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEEE
Confidence            35667777777777 4455443  46777777777777 4555443  46777777777776 666654   24677777


Q ss_pred             cccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecc
Q 042887          266 VGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLN  345 (628)
Q Consensus       266 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~  345 (628)
                      |++|+++ .+|..+.  ++|+.|++++|+++.+ |..+.  ++|+.|++++|+++.++..       +  .++|+.|+++
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l~--~sL~~L~Ls~N~Lt~LP~~-------l--p~sL~~L~Ls  312 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKISCL-PENLP--EELRYLSVYDNSIRTLPAH-------L--PSGITHLNVQ  312 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccCcc-ccccC--CCCcEEECCCCccccCccc-------c--hhhHHHHHhc
Confidence            7777776 4454443  4677777777776643 33332  3566666666666543211       0  0133344444


Q ss_pred             cCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccc
Q 042887          346 TNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGT  425 (628)
Q Consensus       346 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  425 (628)
                      +|                         .++. +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .
T Consensus       313 ~N-------------------------~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~  360 (754)
T PRK15370        313 SN-------------------------SLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-V  360 (754)
T ss_pred             CC-------------------------cccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-c
Confidence            44                         4432 12211  1345555555555553 333332  45666666666665 3


Q ss_pred             cCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhh----hccCCCCEeeCcCCcCc
Q 042887          426 IPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV----GNLRNLAEFDLSENHFS  499 (628)
Q Consensus       426 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~Ls~N~l~  499 (628)
                      +|..+.  ++|+.|++++|+++ .+|..+.  ..|    +.|++++|++. .+|..+    +.++.+..|++.+|.++
T Consensus       361 LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL----~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        361 LPETLP--PTITTLDVSRNALT-NLPENLP--AAL----QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CChhhc--CCcCEEECCCCcCC-CCCHhHH--HHH----HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            444332  45666666666665 2333322  122    45566666665 233322    22355555666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=3.8e-20  Score=187.18  Aligned_cols=88  Identities=23%  Similarity=0.220  Sum_probs=43.6

Q ss_pred             EEecccCccc-ccccccccCCCCCCEEEcccccceee----cccccccCCCCCEEEccCCcCCCcCCCCccccccccCCC
Q 042887          263 FLSVGQNNFT-GSLPHSFSNASNLQVLDVYKNHFSGQ----VKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCS  337 (628)
Q Consensus       263 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~  337 (628)
                      .|+|..+.++ ......+..+.+|+.|+++++.++..    .+..+...+++++++++++.+...+.........+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4566666665 23334455666677777777766432    222334455566666666655421111011122333344


Q ss_pred             CCceeecccCCcc
Q 042887          338 QMEMLYLNTNKFG  350 (628)
Q Consensus       338 ~L~~L~l~~n~~~  350 (628)
                      +|+.|++++|.+.
T Consensus        82 ~L~~L~l~~~~~~   94 (319)
T cd00116          82 GLQELDLSDNALG   94 (319)
T ss_pred             ceeEEEccCCCCC
Confidence            5555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.78  E-value=4.6e-21  Score=161.15  Aligned_cols=179  Identities=27%  Similarity=0.410  Sum_probs=118.6

Q ss_pred             CCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCC
Q 042887          408 ELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRN  487 (628)
Q Consensus       408 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~  487 (628)
                      .+.+++.|.+|+|+++ ..|+.+..+.+|+.|++++|+|+ ..|..++.+++|    +.|+++-|++. ..|..|+.++.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~kl----r~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKL----RILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhh----hheecchhhhh-cCccccCCCch
Confidence            3455566666666666 45556666666666666666666 566666666666    66666666665 56667777777


Q ss_pred             CCEeeCcCCcCcc-cCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEecc
Q 042887          488 LAEFDLSENHFSN-EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLS  566 (628)
Q Consensus       488 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  566 (628)
                      |+.|||++|++.. ..|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+..|.+- ..|..+..++.|++|.+.
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence            7777777777654 35666666777777777777776 66777777777777777777776 566777777777777777


Q ss_pred             CCcCcccCCCCCCCC---CCCcccccCCCCCc
Q 042887          567 YNHFEGEVPRKGVFG---NRTGIHLIGNERLC  595 (628)
Q Consensus       567 ~N~l~~~~p~~~~~~---~l~~~~~~~n~~~c  595 (628)
                      +|+++-.+|+.+.+.   +-+...+..|||.-
T Consensus       182 gnrl~vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  182 GNRLTVLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             cceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            777776666654432   22334455666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=5.7e-20  Score=185.84  Aligned_cols=285  Identities=22%  Similarity=0.282  Sum_probs=155.7

Q ss_pred             EEEeecccCcccCChhhhhCCCCCcEEecccCccccc----ccccccCCCCCCEEEccccccee------ecccccccCC
Q 042887          238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS----LPHSFSNASNLQVLDVYKNHFSG------QVKIDFNRLS  307 (628)
Q Consensus       238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~------~~~~~~~~l~  307 (628)
                      .|+|..+.+++.--..++..+.+|+.|+++++.++..    ++..+...++|++++++++.+.+      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            5778888887444445555688899999999988542    45556677889999999988762      2234566788


Q ss_pred             CCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhcc-C
Q 042887          308 NLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNL-V  386 (628)
Q Consensus       308 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-~  386 (628)
                      +|++|++++|.+.......+  ...... ++|+.|++++|++++.....+                     ...+..+ +
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~--~~l~~~-~~L~~L~ls~~~~~~~~~~~l---------------------~~~l~~~~~  137 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVL--ESLLRS-SSLQELKLNNNGLGDRGLRLL---------------------AKGLKDLPP  137 (319)
T ss_pred             ceeEEEccCCCCChhHHHHH--HHHhcc-CcccEEEeeCCccchHHHHHH---------------------HHHHHhCCC
Confidence            99999999998864221111  111111 446667776666553222111                     1122233 4


Q ss_pred             CcCeeeecccccccc----CCcCCCCCCCCCeEecccCccccc----cCccccCCCCCCeEecCCcccccccCCcccCCc
Q 042887          387 NINAFGVEYNQLTGT----IPHAIGELKNLQGLALVRNSLRGT----IPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQ  458 (628)
Q Consensus       387 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  458 (628)
                      +|+.|++++|.+++.    .+..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++...       
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------  210 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-------  210 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-------
Confidence            444555555444421    112233344455555555544421    11222223344444444444331110       


Q ss_pred             chhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCcccc-----CCCCCCeEECcCceeee----ecCcc
Q 042887          459 NLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLS-----ACTTLEYLHLQGNSFSG----SLPLS  529 (628)
Q Consensus       459 ~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~  529 (628)
                                       ..+...+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.++.    .+...
T Consensus       211 -----------------~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~  273 (319)
T cd00116         211 -----------------SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV  273 (319)
T ss_pred             -----------------HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence                             01222344556677777777766642222221     23677777777777752    22334


Q ss_pred             ccCCCCCCEEECCCCccccc----Cchhhhcc-cCCCeEeccCCcC
Q 042887          530 LKTLKSIKELDLSRNNLSGQ----IPKYLENL-LFLAYLNLSYNHF  570 (628)
Q Consensus       530 ~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~ls~N~l  570 (628)
                      +..+++|+++++++|.++..    ....+... +.|+++++.+|++
T Consensus       274 ~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         274 LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            55567788888888888744    23333334 5677888877764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=1.5e-20  Score=158.14  Aligned_cols=161  Identities=26%  Similarity=0.458  Sum_probs=145.5

Q ss_pred             CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      .++..++.|.||+|+++ .+|..++.+.+|++|++++|+|+ ..|.+++++++|+.|+++-|++. +.|..|+.++-|+.
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            35667888999999998 56667999999999999999998 78999999999999999999998 89999999999999


Q ss_pred             EEeecccCcc-cCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887          239 ISLHSNRFEG-SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN  317 (628)
Q Consensus       239 L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n  317 (628)
                      |||++|++.. .+|..+|. +..|+.|+|++|.+. .+|..++++++|+.|.+..|.+- ..|..++.+++|++|++.+|
T Consensus       107 ldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            9999999963 57888876 999999999999999 88999999999999999999987 46778999999999999999


Q ss_pred             cCCCcCCC
Q 042887          318 NLGTESTS  325 (628)
Q Consensus       318 ~l~~~~~~  325 (628)
                      +++.++++
T Consensus       184 rl~vlppe  191 (264)
T KOG0617|consen  184 RLTVLPPE  191 (264)
T ss_pred             eeeecChh
Confidence            99876643

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.69  E-value=2.7e-17  Score=157.67  Aligned_cols=95  Identities=29%  Similarity=0.575  Sum_probs=85.5

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ...+|.+.+.||+|+||+||+|++++++..||||.+.+.  .+...+-...|+.+|++++|||||++++++     ++.+
T Consensus         8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~-----~~~~   82 (429)
T KOG0595|consen    8 VVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCI-----EDDD   82 (429)
T ss_pred             ccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEE-----ecCC
Confidence            356899999999999999999999999999999999776  445567788999999999999999999995     4588


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +.|+|||||.||||.+|++..+
T Consensus        83 ~i~lVMEyC~gGDLs~yi~~~~  104 (429)
T KOG0595|consen   83 FIYLVMEYCNGGDLSDYIRRRG  104 (429)
T ss_pred             eEEEEEEeCCCCCHHHHHHHcC
Confidence            9999999999999999998776

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=2.4e-14  Score=137.54  Aligned_cols=95  Identities=25%  Similarity=0.433  Sum_probs=80.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-------chhhhHHHHHHHHhhcCCCCcccccceeeecc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-------GAAKSFVTECEALSNVRHRNLIKIITVCSSID  118 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~  118 (628)
                      ..+.|.+.+.+|+|+||.|-+|..+++|+.||||++++...       .......+|+++|+++.|||||+++++     
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~-----  244 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDF-----  244 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeee-----
Confidence            34668889999999999999999999999999999976421       112335799999999999999999999     


Q ss_pred             ccccceeeeeecccccCCchhhhhccc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      |+..+..||||||++||+|.+++-.+.
T Consensus       245 f~~~ds~YmVlE~v~GGeLfd~vv~nk  271 (475)
T KOG0615|consen  245 FEVPDSSYMVLEYVEGGELFDKVVANK  271 (475)
T ss_pred             eecCCceEEEEEEecCccHHHHHHhcc
Confidence            556888899999999999999986554

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=1.3e-13  Score=138.97  Aligned_cols=107  Identities=46%  Similarity=0.740  Sum_probs=92.5

Q ss_pred             CCCcccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccce
Q 042887           34 QFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITV  113 (628)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~  113 (628)
                      ..+.+++.++..++++|.....||+|+||.||+|... +|+.||||.+........++|.+|++++.+++|||+|+++++
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~-~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGy  139 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLS-DGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGY  139 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEEC-CCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEE
Confidence            4667899999999999999999999999999999994 458999998765443214569999999999999999999999


Q ss_pred             eeeccccccc-eeeeeecccccCCchhhhhcccc
Q 042887          114 CSSIDFKGVD-FKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       114 ~~~~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      |.+     .. ...+|+|||++|+|++++.....
T Consensus       140 C~e-----~~~~~~LVYEym~nGsL~d~L~~~~~  168 (361)
T KOG1187|consen  140 CLE-----GGEHRLLVYEYMPNGSLEDHLHGKKG  168 (361)
T ss_pred             Eec-----CCceEEEEEEccCCCCHHHHhCCCCC
Confidence            975     34 58999999999999999987654

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=1.4e-13  Score=139.22  Aligned_cols=101  Identities=21%  Similarity=0.370  Sum_probs=89.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ..|...+.||+||||.||.+++..+|+.||+|++.+.   .....+...+||++++.++|||||+++++     |++...
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~-----FEDs~n   92 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHF-----FEDSNN   92 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeE-----eecCCc
Confidence            5699999999999999999999999999999999874   45567889999999999999999999999     677999


Q ss_pred             eeeeecccccCCchhhhhccccccccccCC
Q 042887          125 KALIYEYMKCGSSEDWMHQSNDKLEAGNLG  154 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~  154 (628)
                      .|||.|+|+.|+|.++++ .++.+++..+.
T Consensus        93 VYivLELC~~~sL~el~K-rrk~ltEpEar  121 (592)
T KOG0575|consen   93 VYIVLELCHRGSLMELLK-RRKPLTEPEAR  121 (592)
T ss_pred             eEEEEEecCCccHHHHHH-hcCCCCcHHHH
Confidence            999999999999999988 55566655443

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.43  E-value=8.5e-14  Score=128.42  Aligned_cols=89  Identities=26%  Similarity=0.431  Sum_probs=76.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      +++|+....+|+|+||+||+|+++.+|+.||||.+....  ....+-..||+++|++++|||+|.++++     |...+.
T Consensus         1 MekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEV-----Frrkrk   75 (396)
T KOG0593|consen    1 MEKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEV-----FRRKRK   75 (396)
T ss_pred             CcHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHH-----HHhcce
Confidence            367888899999999999999999999999999996543  3444567999999999999999999999     556899


Q ss_pred             eeeeecccccCCchhh
Q 042887          125 KALIYEYMKCGSSEDW  140 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~  140 (628)
                      .++|+|||+..-|++.
T Consensus        76 lhLVFE~~dhTvL~eL   91 (396)
T KOG0593|consen   76 LHLVFEYCDHTVLHEL   91 (396)
T ss_pred             eEEEeeecchHHHHHH
Confidence            9999999987555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.41  E-value=1.1e-14  Score=145.24  Aligned_cols=190  Identities=28%  Similarity=0.460  Sum_probs=138.9

Q ss_pred             EEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcc
Q 042887          366 VIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNN  445 (628)
Q Consensus       366 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  445 (628)
                      ..|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++.+..|+.|||+.|+++ ..|..++.++ |+.|-+++|+
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            4455566655 55667777777777777788776 67777888888888888888887 6677777765 7778888888


Q ss_pred             cccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeee
Q 042887          446 LQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGS  525 (628)
Q Consensus       446 l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  525 (628)
                      ++ ..|..++....|    ..||.+.|.+. .+|..++++.+|+.|.+..|++. ..|..+..+ .|..||+|+|+++ .
T Consensus       155 l~-~lp~~ig~~~tl----~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~  225 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTL----AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y  225 (722)
T ss_pred             cc-cCCcccccchhH----HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence            87 677777766666    56788888887 57777888888888888888887 566666644 4788888888887 7


Q ss_pred             cCccccCCCCCCEEECCCCcccccCchhhhccc---CCCeEeccCCc
Q 042887          526 LPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL---FLAYLNLSYNH  569 (628)
Q Consensus       526 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---~L~~L~ls~N~  569 (628)
                      +|-.|..|+.|++|-|.+|.++ .+|..+...-   =.++|+..-++
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            8888888888888888888887 4555543222   23556666553

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.41  E-value=3.1e-13  Score=122.60  Aligned_cols=95  Identities=29%  Similarity=0.538  Sum_probs=82.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      +.|...+.+|+|.||+||+|++.++|+.||||.++...  .+......||+..|++++|+||++++++     |...+..
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~-----F~~~~~l   76 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDV-----FPHKSNL   76 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhh-----ccCCCce
Confidence            46888899999999999999999999999999998753  3455678999999999999999999999     5568889


Q ss_pred             eeeecccccCCchhhhhcccccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      .+|+||++. +|+..+++....+
T Consensus        77 ~lVfEfm~t-dLe~vIkd~~i~l   98 (318)
T KOG0659|consen   77 SLVFEFMPT-DLEVVIKDKNIIL   98 (318)
T ss_pred             EEEEEeccc-cHHHHhccccccc
Confidence            999999985 8988887766444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.40  E-value=6.5e-15  Score=146.76  Aligned_cols=177  Identities=31%  Similarity=0.470  Sum_probs=159.0

Q ss_pred             ccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcc
Q 042887          384 NLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTL  463 (628)
Q Consensus       384 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l  463 (628)
                      .+..-...|++.|++. .+|..++.+..|+.+.|++|.+. .+|..+.++..|+++|++.|+++ ..|..++.|+ |   
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-L---  145 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-L---  145 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-c---
Confidence            4455567899999998 78888899999999999999999 78899999999999999999998 7888888876 3   


Q ss_pred             cceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCC
Q 042887          464 SRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSR  543 (628)
Q Consensus       464 ~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  543 (628)
                       +.|-+++|+++ .+|..++.++.|..||.+.|.+. ..|..++++.+|+.|.+..|++. .+|..+..|+ |..||+|.
T Consensus       146 -kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfSc  220 (722)
T KOG0532|consen  146 -KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSC  220 (722)
T ss_pred             -eeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeeccc
Confidence             78999999998 78889999999999999999998 67888999999999999999998 6777777654 99999999


Q ss_pred             CcccccCchhhhcccCCCeEeccCCcCccc
Q 042887          544 NNLSGQIPKYLENLLFLAYLNLSYNHFEGE  573 (628)
Q Consensus       544 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  573 (628)
                      |+++ .+|-.|.+|+.|++|-|.+|+++..
T Consensus       221 Nkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  221 NKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             Ccee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            9999 7899999999999999999999854

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.40  E-value=1.9e-13  Score=136.15  Aligned_cols=93  Identities=26%  Similarity=0.420  Sum_probs=83.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--chhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      +++|.+.+.||+|+||+||+|+.+.+.+.||+|.+.+..+  ...+...+|++++++++|||||.++++     |++...
T Consensus         1 me~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~es-----fEt~~~   75 (808)
T KOG0597|consen    1 MEQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLES-----FETSAH   75 (808)
T ss_pred             CcchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHh-----hcccce
Confidence            3678899999999999999999999999999999987643  455678999999999999999999999     788999


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +++|+|||.| +|++++.++.
T Consensus        76 ~~vVte~a~g-~L~~il~~d~   95 (808)
T KOG0597|consen   76 LWVVTEYAVG-DLFTILEQDG   95 (808)
T ss_pred             EEEEehhhhh-hHHHHHHhcc
Confidence            9999999997 9999997765

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.39  E-value=4.4e-13  Score=133.37  Aligned_cols=95  Identities=23%  Similarity=0.420  Sum_probs=85.6

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..++|+++++||+|+||.||.|+-+.+|+.||+|++++..   ....+.+..|-++|....+|+||+++.+     |++.
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYs-----FQD~  213 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYS-----FQDK  213 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEE-----ecCC
Confidence            4578999999999999999999999999999999998763   5667788899999999999999999988     6779


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ...|+||||.+|||+..++.+.+
T Consensus       214 ~~LYLiMEylPGGD~mTLL~~~~  236 (550)
T KOG0605|consen  214 EYLYLIMEYLPGGDMMTLLMRKD  236 (550)
T ss_pred             CeeEEEEEecCCccHHHHHHhcC
Confidence            99999999999999999886554

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.39  E-value=3.3e-13  Score=128.64  Aligned_cols=96  Identities=26%  Similarity=0.439  Sum_probs=86.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.++||+|+||+||.++.+.+++.||+|++++.   .....+...+|..+|.+++||.||+++..     |++..
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ys-----FQt~~   98 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYS-----FQTEE   98 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEe-----cccCC
Confidence            46899999999999999999999999999999999875   34456778899999999999999999988     78899


Q ss_pred             eeeeeecccccCCchhhhhccccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      ..|+|+||+.||+|..++.+.+..
T Consensus        99 kLylVld~~~GGeLf~hL~~eg~F  122 (357)
T KOG0598|consen   99 KLYLVLDYLNGGELFYHLQREGRF  122 (357)
T ss_pred             eEEEEEeccCCccHHHHHHhcCCc
Confidence            999999999999999999866643

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.39  E-value=1.2e-13  Score=131.95  Aligned_cols=94  Identities=22%  Similarity=0.415  Sum_probs=84.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ...|++.+.+|+|.||+|-+|.....|+.||||.+++.   ++++.-.+.||++||..+.||||++++++     |+..+
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEV-----FENkd  126 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEV-----FENKD  126 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhh-----hcCCc
Confidence            45789999999999999999999899999999999765   34556678999999999999999999999     78899


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ...+||||..+|+|++|+.+.+
T Consensus       127 KIvivMEYaS~GeLYDYiSer~  148 (668)
T KOG0611|consen  127 KIVIVMEYASGGELYDYISERG  148 (668)
T ss_pred             eEEEEEEecCCccHHHHHHHhc
Confidence            9999999999999999998765

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.38  E-value=1.8e-13  Score=130.50  Aligned_cols=114  Identities=25%  Similarity=0.347  Sum_probs=93.9

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc-eee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD-FKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~-~~~  126 (628)
                      +.+..+.||+|..|+||+++|+.+++.+|+|.+... +....+++.+|++++.+.+||+||++++++.+     .. ..+
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~-----~~~~is  154 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYS-----NGEEIS  154 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEe-----CCceEE
Confidence            566778999999999999999999999999999654 34566889999999999999999999999764     44 699


Q ss_pred             eeecccccCCchhhhhccccccccccCCccccCCcCcccEEE
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMID  168 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  168 (628)
                      ++||||.+|+|+...+.. +.+++..++.+..+-++.|.+|+
T Consensus       155 I~mEYMDgGSLd~~~k~~-g~i~E~~L~~ia~~VL~GL~YLh  195 (364)
T KOG0581|consen  155 ICMEYMDGGSLDDILKRV-GRIPEPVLGKIARAVLRGLSYLH  195 (364)
T ss_pred             eehhhcCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988765 45666666665555555565555

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=8.7e-13  Score=128.10  Aligned_cols=100  Identities=25%  Similarity=0.427  Sum_probs=80.8

Q ss_pred             ccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc--CCCCcccccceee
Q 042887           38 VSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV--RHRNLIKIITVCS  115 (628)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l--~h~nIv~l~~~~~  115 (628)
                      .++-.......+..+.+.||+|.||.||+|.|  .|+.||||++...+   .+.+.||.++.+..  +|+||+.++++-.
T Consensus       201 lplLVQRTiarqI~L~e~IGkGRyGEVwrG~w--rGe~VAVKiF~srd---E~SWfrEtEIYqTvmLRHENILgFIaaD~  275 (513)
T KOG2052|consen  201 LPLLVQRTIARQIVLQEIIGKGRFGEVWRGRW--RGEDVAVKIFSSRD---ERSWFRETEIYQTVMLRHENILGFIAADN  275 (513)
T ss_pred             chhHhHHhhhheeEEEEEecCccccceeeccc--cCCceEEEEecccc---hhhhhhHHHHHHHHHhccchhhhhhhccc
Confidence            34445566677888999999999999999999  78999999997543   36778888887654  8999999998754


Q ss_pred             eccccccceeeeeecccccCCchhhhhc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      .. -......|+|.+|.+.|+|++|+.+
T Consensus       276 ~~-~gs~TQLwLvTdYHe~GSL~DyL~r  302 (513)
T KOG2052|consen  276 KD-NGSWTQLWLVTDYHEHGSLYDYLNR  302 (513)
T ss_pred             cC-CCceEEEEEeeecccCCcHHHHHhh
Confidence            21 1334689999999999999999976

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.37  E-value=6.3e-13  Score=135.01  Aligned_cols=106  Identities=25%  Similarity=0.408  Sum_probs=87.8

Q ss_pred             cHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCc---E-EEEEEeecc---ccchhhhHHHHHHHHhhcCCCCccccc
Q 042887           39 SYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGT---T-VAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKII  111 (628)
Q Consensus        39 ~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~---~-~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~  111 (628)
                      +-..|+...++..+.+.||+|+||.||+|.....+.   . ||+|.....   .+.....|.+|+++|++++|||||+++
T Consensus       148 ~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~y  227 (474)
T KOG0194|consen  148 PRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFY  227 (474)
T ss_pred             cccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            344566667777888999999999999999875432   3 899998752   355678899999999999999999999


Q ss_pred             ceeeeccccccceeeeeecccccCCchhhhhccccccc
Q 042887          112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       112 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      +++..     ....|+|||+|+||+|.+++++..+.++
T Consensus       228 GVa~~-----~~Pl~ivmEl~~gGsL~~~L~k~~~~v~  260 (474)
T KOG0194|consen  228 GVAVL-----EEPLMLVMELCNGGSLDDYLKKNKKSLP  260 (474)
T ss_pred             EEEcC-----CCccEEEEEecCCCcHHHHHHhCCCCCC
Confidence            99765     7789999999999999999988776443

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=3e-13  Score=142.18  Aligned_cols=98  Identities=24%  Similarity=0.484  Sum_probs=83.6

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccccc-hhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVCSSI  117 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~  117 (628)
                      ..++.+.+..+.||+|+||+||+|+...     ....||||.++..... ...+|.||++.|+.++|||||+++++|.. 
T Consensus       482 ~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~-  560 (774)
T KOG1026|consen  482 EIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCRE-  560 (774)
T ss_pred             EechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEcc-
Confidence            3456677778899999999999999642     2356999999876544 67889999999999999999999999986 


Q ss_pred             cccccceeeeeecccccCCchhhhhcccc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                          .+.++||+|||..|||.+|++....
T Consensus       561 ----~~P~~MvFEYm~~GDL~eFLra~sP  585 (774)
T KOG1026|consen  561 ----GDPLCMVFEYMDHGDLHEFLRARSP  585 (774)
T ss_pred             ----CCeeEEEEEecccccHHHHHHhhCC
Confidence                7889999999999999999986653

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=5.6e-13  Score=131.51  Aligned_cols=100  Identities=28%  Similarity=0.449  Sum_probs=82.4

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..+.|+..+.||+|.||.||+|++..+|+.||+|.+....  .+......|||.+|+++.||||+++.+..++   ....
T Consensus       115 ~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~---~~~~  191 (560)
T KOG0600|consen  115 RADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTS---KLSG  191 (560)
T ss_pred             chHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEe---cCCc
Confidence            3467888899999999999999999999999999998754  4455667899999999999999999998765   2357


Q ss_pred             eeeeeecccccCCchhhhhccccccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      .+|||+|||+. ||..++...+-+++
T Consensus       192 siYlVFeYMdh-DL~GLl~~p~vkft  216 (560)
T KOG0600|consen  192 SIYLVFEYMDH-DLSGLLSSPGVKFT  216 (560)
T ss_pred             eEEEEEecccc-hhhhhhcCCCcccC
Confidence            89999999985 77777655444443

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.35  E-value=7.3e-13  Score=136.90  Aligned_cols=98  Identities=27%  Similarity=0.468  Sum_probs=83.9

Q ss_pred             CCCcCceeecCCceeEEEEEECCCC---cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETG---TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~---~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ...+.++||.|.||.|++|+.+.-|   ..||||.++... +.....|..|+.||.+.+||||+++.++.+.     .+.
T Consensus       630 ~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTk-----s~P  704 (996)
T KOG0196|consen  630 CVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTK-----SKP  704 (996)
T ss_pred             heEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEec-----Cce
Confidence            4467889999999999999987655   469999998763 4567889999999999999999999999554     788


Q ss_pred             eeeeecccccCCchhhhhccccccccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSNDKLEAG  151 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~~~~~~  151 (628)
                      .++|.|||++|+|+.|++.+.+.++..
T Consensus       705 vMIiTEyMENGsLDsFLR~~DGqftvi  731 (996)
T KOG0196|consen  705 VMIITEYMENGSLDSFLRQNDGQFTVI  731 (996)
T ss_pred             eEEEhhhhhCCcHHHHHhhcCCceEee
Confidence            899999999999999999888666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.34  E-value=1.4e-12  Score=135.65  Aligned_cols=178  Identities=33%  Similarity=0.519  Sum_probs=86.3

Q ss_pred             cccEEEccCCcceeeCchhhhccC-CcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEec
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLV-NINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFL  441 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  441 (628)
                      .++.+++.+|.++. ++.....+. +|+.|++++|++. .+|..+..+++|+.|++++|++. ..|......+.|+.|++
T Consensus       117 ~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            45555555555552 233333332 5555555555555 23344555555555555555555 23333334555555555


Q ss_pred             CCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCce
Q 042887          442 GFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS  521 (628)
Q Consensus       442 ~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  521 (628)
                      ++|+++ .+|........|    +.+++++|.+. ..+..+..+.++..+.+++|++. ..+..+..++++++|++++|.
T Consensus       194 s~N~i~-~l~~~~~~~~~L----~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         194 SGNKIS-DLPPEIELLSAL----EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             cCCccc-cCchhhhhhhhh----hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccc
Confidence            555555 333332222233    44455555322 23444455555555555555554 224444555555555555555


Q ss_pred             eeeecCccccCCCCCCEEECCCCcccccCch
Q 042887          522 FSGSLPLSLKTLKSIKELDLSRNNLSGQIPK  552 (628)
Q Consensus       522 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  552 (628)
                      ++.. +. +..+.+++.|++++|.+...+|.
T Consensus       267 i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         267 ISSI-SS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccc-cc-ccccCccCEEeccCccccccchh
Confidence            5522 22 45555555555555555544333

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=2.1e-12  Score=140.33  Aligned_cols=118  Identities=34%  Similarity=0.546  Sum_probs=92.8

Q ss_pred             CCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEecc
Q 042887          487 NLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLS  566 (628)
Q Consensus       487 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  566 (628)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+.++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcCcccCCCC--CCCCCCCcccccCCCCCcccCCCCCCCCCC
Q 042887          567 YNHFEGEVPRK--GVFGNRTGIHLIGNERLCGGLEELHLPSCH  607 (628)
Q Consensus       567 ~N~l~~~~p~~--~~~~~l~~~~~~~n~~~c~~~~~l~l~~c~  607 (628)
                      +|+++|.+|..  ....++..+++.+|+.+|+. +.  ++.|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~--l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PG--LRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCC-CC--CCCCc
Confidence            88888888753  22334567888999999974 32  46675

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=1.3e-13  Score=125.94  Aligned_cols=94  Identities=22%  Similarity=0.356  Sum_probs=79.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ..+|++.+.||+|+||.||++.+..+|+.+|.|.++-.  +.........|+.+|++++|||||++++...   .++..-
T Consensus        18 l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f---~~~~ev   94 (375)
T KOG0591|consen   18 LADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSF---IEDNEV   94 (375)
T ss_pred             HHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhh---hccchh
Confidence            45688999999999999999999999999999998743  3445677899999999999999999988432   123444


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .++|||||.+|||.++++.
T Consensus        95 lnivmE~c~~GDLsqmIk~  113 (375)
T KOG0591|consen   95 LNIVMELCDAGDLSQMIKH  113 (375)
T ss_pred             hHHHHHhhcccCHHHHHHH
Confidence            8999999999999998853

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.31  E-value=8.7e-13  Score=131.88  Aligned_cols=97  Identities=27%  Similarity=0.459  Sum_probs=82.3

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      .+.+...++.+.+.+.||+|.||.||.|.+. ....||+|.++... ...+.|.+|+.+|++++|++||+++++|..   
T Consensus       198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~-~~~~vavk~ik~~~-m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~---  272 (468)
T KOG0197|consen  198 RDPWEIPREELKLIRELGSGQFGEVWLGKWN-GSTKVAVKTIKEGS-MSPEAFLREAQIMKKLRHEKLVKLYGVCTK---  272 (468)
T ss_pred             cCCeeecHHHHHHHHHhcCCccceEEEEEEc-CCCcccceEEeccc-cChhHHHHHHHHHHhCcccCeEEEEEEEec---
Confidence            4556666677788899999999999999993 23479999997653 345789999999999999999999999874   


Q ss_pred             cccceeeeeecccccCCchhhhhc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                        ....|||||||+.|+|.+|+++
T Consensus       273 --~~piyIVtE~m~~GsLl~yLr~  294 (468)
T KOG0197|consen  273 --QEPIYIVTEYMPKGSLLDYLRT  294 (468)
T ss_pred             --CCceEEEEEecccCcHHHHhhh
Confidence              4579999999999999999987

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.31  E-value=3.6e-13  Score=125.99  Aligned_cols=103  Identities=23%  Similarity=0.425  Sum_probs=81.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .+.|+...+|++|+||.||+|+++++++.||+|+++...  .+-.=...|||.++.+.+|||||.+.++...   ...+.
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG---~~~d~  151 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVG---SNMDK  151 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEec---cccce
Confidence            457888999999999999999999999999999997653  2333356899999999999999999887653   33567


Q ss_pred             eeeeecccccCCchhhhhccccccccccC
Q 042887          125 KALIYEYMKCGSSEDWMHQSNDKLEAGNL  153 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~  153 (628)
                      +|||||||+. ||...|..-...+..+.+
T Consensus       152 iy~VMe~~Eh-DLksl~d~m~q~F~~~ev  179 (419)
T KOG0663|consen  152 IYIVMEYVEH-DLKSLMETMKQPFLPGEV  179 (419)
T ss_pred             eeeeHHHHHh-hHHHHHHhccCCCchHHH
Confidence            9999999985 787777655544443333

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=1.2e-12  Score=117.13  Aligned_cols=94  Identities=26%  Similarity=0.371  Sum_probs=83.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.+|+|.||.||.|+.++++-.||+|++.+..   .+...++.||+++-++++||||+++++.     |.+..
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~-----fhd~~   95 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGY-----FHDSK   95 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhh-----eeccc
Confidence            578999999999999999999999999999999997653   4556789999999999999999999999     55689


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+++||.++|++...+....
T Consensus        96 riyLilEya~~gel~k~L~~~~  117 (281)
T KOG0580|consen   96 RIYLILEYAPRGELYKDLQEGR  117 (281)
T ss_pred             eeEEEEEecCCchHHHHHHhcc
Confidence            9999999999999998887544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.30  E-value=3.1e-12  Score=133.10  Aligned_cols=147  Identities=29%  Similarity=0.428  Sum_probs=67.6

Q ss_pred             EEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCC-CCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887          166 MIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLR-SLNYLSISENNFSCKLPLSIWNISSLEIISLHSN  244 (628)
Q Consensus       166 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n  244 (628)
                      .++++.|.+.. ....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            34444444432 2222334455555555555554 3333444442 5555555555554 33444555555555555555


Q ss_pred             cCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcC
Q 042887          245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL  319 (628)
Q Consensus       245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l  319 (628)
                      +++ .+|.... .+++|+.|++++|+++ .+|........|++|.+++|++. ..+..+..+.++..+.+.+|++
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee
Confidence            554 4444332 2455555555555555 33333333444555555555322 1222344444444444444444

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.30  E-value=2.1e-12  Score=126.41  Aligned_cols=93  Identities=27%  Similarity=0.405  Sum_probs=73.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHH--HhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEA--LSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~--l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ....++.+.||+|.||+||+|..  +++.||||++...+.   +.|..|-++  +-.++|+||++++++....+-. ...
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL--~~~~VAVKifp~~~k---qs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~-~~e  282 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQL--DNRLVAVKIFPEQEK---QSFQNEKNIYSLPGMKHENILQFIGAEKRGTAD-RME  282 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhc--cCceeEEEecCHHHH---HHHHhHHHHHhccCccchhHHHhhchhccCCcc-ccc
Confidence            44567778999999999999999  779999999976543   556666555  4566899999999986553322 457


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .++|+||.+.|+|.+|++.+-
T Consensus       283 ywLVt~fh~kGsL~dyL~~nt  303 (534)
T KOG3653|consen  283 YWLVTEFHPKGSLCDYLKANT  303 (534)
T ss_pred             eeEEeeeccCCcHHHHHHhcc
Confidence            899999999999999997654

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.29  E-value=3e-12  Score=128.24  Aligned_cols=91  Identities=35%  Similarity=0.594  Sum_probs=76.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcE-EEEEEeeccccc--hhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTT-VAVKVMNLKQKG--AAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~-~avK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..+....+.+|+|+||+||+|.+  .|+. ||+|++......  ..++|.+|+.+|.+++|||||+++++|.+     ..
T Consensus        40 ~~~l~~~~~iG~G~~g~V~~~~~--~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~-----~~  112 (362)
T KOG0192|consen   40 PDELPIEEVLGSGSFGTVYKGKW--RGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTS-----PP  112 (362)
T ss_pred             hHHhhhhhhcccCCceeEEEEEe--CCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC-----CC
Confidence            34455667799999999999999  5666 999999765422  25689999999999999999999999875     33


Q ss_pred             -eeeeeecccccCCchhhhhcc
Q 042887          124 -FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 -~~~lv~e~~~~g~L~~~l~~~  144 (628)
                       ...+||||+++|+|.+++...
T Consensus       113 ~~~~iVtEy~~~GsL~~~l~~~  134 (362)
T KOG0192|consen  113 GSLCIVTEYMPGGSLSVLLHKK  134 (362)
T ss_pred             CceEEEEEeCCCCcHHHHHhhc
Confidence             689999999999999999774

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.28  E-value=1.1e-13  Score=127.28  Aligned_cols=115  Identities=20%  Similarity=0.308  Sum_probs=93.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .+-|.+.+.+|+|+||.||+|.++++|+.+|||.+....  +.+.+..|+.+|++.+.|+||++++.+     ......|
T Consensus        32 EEVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s--DLQEIIKEISIMQQC~S~yVVKYYGSY-----FK~sDLW  104 (502)
T KOG0574|consen   32 EEVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT--DLQEIIKEISIMQQCKSKYVVKYYGSY-----FKHSDLW  104 (502)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc--hHHHHHHHHHHHHHcCCchhhhhhhhh-----ccCCceE
Confidence            345777889999999999999999999999999987643  457789999999999999999999984     4477899


Q ss_pred             eeecccccCCchhhhhccccccccccCCccccCCcCcccEEE
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMID  168 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  168 (628)
                      +|||||-.|+..+.++.+++.+.+-....+-...++.|++|+
T Consensus       105 IVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH  146 (502)
T KOG0574|consen  105 IVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLH  146 (502)
T ss_pred             eehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHH
Confidence            999999999999999888877765444444333444455443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=6.6e-13  Score=128.70  Aligned_cols=194  Identities=21%  Similarity=0.235  Sum_probs=136.9

Q ss_pred             ccCCcCcccEEEccCCccccccc-hhhhCCCCCCEEecccCcCccccc--ccccCCCCCCEeecccccCcccCCcC-ccC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFP-DFIANFSALEAIDISANMLGGRIP--DSLCQLRSLNYLSISENNFSCKLPLS-IWN  232 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~i~~~~p~~-~~~  232 (628)
                      .-.++.+|+.+.|.+..+..... .....+++++.||||.|-++...+  .-...|++|+.|+|+.|.+....... -..
T Consensus       116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            34678889999999888753222 467789999999999998874432  33568999999999999987433222 236


Q ss_pred             CCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeec-ccccccCCCCCE
Q 042887          233 ISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQV-KIDFNRLSNLSR  311 (628)
Q Consensus       233 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~  311 (628)
                      +++|+.|.|+.|.++..--..+...+|+|+.|+|.+|............+..|++|||++|++-... -...+.++.|..
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            7889999999999874333333446899999999999644455556677888999999999886433 134567888888


Q ss_pred             EEccCCcCCCcCCCCccccccccCCCCCceeecccCCcc
Q 042887          312 LFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFG  350 (628)
Q Consensus       312 L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  350 (628)
                      |+++.+.+.++...+.+.......+++|++|+++.|++.
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            999988887765444333333445566666666666553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.28  E-value=3.2e-12  Score=113.52  Aligned_cols=129  Identities=22%  Similarity=0.296  Sum_probs=44.0

Q ss_pred             hhCCCCCCEEecccCcCccccccccc-CCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCC
Q 042887          182 IANFSALEAIDISANMLGGRIPDSLC-QLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPN  260 (628)
Q Consensus       182 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  260 (628)
                      +.+..++++|+|++|.|+.+  +.++ .+.+|+.|+|++|.|+. ++ .+..+++|++|++++|.++ .++..+...+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            33455677777777777633  2344 46777777777777773 32 4667777777777777777 565544434777


Q ss_pred             CcEEecccCccccccc-ccccCCCCCCEEEcccccceeec---ccccccCCCCCEEEcc
Q 042887          261 VNFLSVGQNNFTGSLP-HSFSNASNLQVLDVYKNHFSGQV---KIDFNRLSNLSRLFLS  315 (628)
Q Consensus       261 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~l~~L~~L~L~  315 (628)
                      |++|++++|+|..... ..++.+++|+.|++.+|.++...   ...+..+|+|+.||-.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            7777777777764322 34666777777777777775331   1134566777777643

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.27  E-value=1.8e-12  Score=133.31  Aligned_cols=101  Identities=26%  Similarity=0.409  Sum_probs=82.7

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecc-cccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~~~~~  125 (628)
                      ..|...+.+|+||||-||+|+++++|+.||||..+.. ....+++..+|+++|++++|||||+++++..... ....+..
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~   92 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLP   92 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccc
Confidence            3466678999999999999999999999999999764 3456678999999999999999999999854310 1124567


Q ss_pred             eeeecccccCCchhhhhcccccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      .++||||+||||...+.+..+.+
T Consensus        93 vlvmEyC~gGsL~~~L~~PEN~~  115 (732)
T KOG4250|consen   93 VLVMEYCSGGSLRKVLNSPENAY  115 (732)
T ss_pred             eEEEeecCCCcHHHHhcCccccc
Confidence            88999999999999998766443

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.27  E-value=4.6e-12  Score=116.85  Aligned_cols=94  Identities=23%  Similarity=0.321  Sum_probs=83.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|+..+.+|.|+||+|..++.+.+|.+||+|++++..   ..+.+....|..+|+.+.||.++++.+.+     .+.+
T Consensus        43 l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~-----~d~~  117 (355)
T KOG0616|consen   43 LQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTF-----KDNS  117 (355)
T ss_pred             hhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEee-----ccCC
Confidence            457889999999999999999999999999999998753   34567788999999999999999999884     5589


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..||||||++||.+..++++.+
T Consensus       118 ~lymvmeyv~GGElFS~Lrk~~  139 (355)
T KOG0616|consen  118 NLYMVMEYVPGGELFSYLRKSG  139 (355)
T ss_pred             eEEEEEeccCCccHHHHHHhcC
Confidence            9999999999999999998765

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=7.8e-12  Score=126.52  Aligned_cols=99  Identities=25%  Similarity=0.410  Sum_probs=83.5

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc----cc-chhhhHHHHHHHHhhcC-CCCcccccceeeeccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK----QK-GAAKSFVTECEALSNVR-HRNLIKIITVCSSIDF  119 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~----~~-~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~  119 (628)
                      ..+.|.+.+.||+|+||+|+.|.+..+|+.||+|+++..    .. ...+.+.||+.+++.++ ||||++++++.     
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~-----   89 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVF-----   89 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEE-----
Confidence            457899999999999999999999999999999987653    11 23456778999999999 99999999994     


Q ss_pred             cccceeeeeecccccCCchhhhhcccccccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSNDKLEA  150 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~  150 (628)
                      .+....|+|||||.||+|.+++.+ .+.+.+
T Consensus        90 ~t~~~~~ivmEy~~gGdL~~~i~~-~g~l~E  119 (370)
T KOG0583|consen   90 ATPTKIYIVMEYCSGGDLFDYIVN-KGRLKE  119 (370)
T ss_pred             ecCCeEEEEEEecCCccHHHHHHH-cCCCCh
Confidence            457779999999999999999988 444433

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.27  E-value=1.5e-12  Score=110.94  Aligned_cols=99  Identities=23%  Similarity=0.457  Sum_probs=83.6

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|.-.+.||+|.||+||+|+..++++.||+|.++..+  ++......||+.++++++|.|||+++++     .+.++..-
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dv-----lhsdkklt   77 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDV-----LHSDKKLT   77 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhh-----hccCceeE
Confidence            4666678999999999999999999999999998753  4566788999999999999999999999     55688999


Q ss_pred             eeecccccCCchhhhhccccccccccC
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKLEAGNL  153 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~~~~~  153 (628)
                      +|+|||.. ++..|+..-++.++....
T Consensus        78 lvfe~cdq-dlkkyfdslng~~d~~~~  103 (292)
T KOG0662|consen   78 LVFEFCDQ-DLKKYFDSLNGDLDPEIV  103 (292)
T ss_pred             EeHHHhhH-HHHHHHHhcCCcCCHHHH
Confidence            99999974 788888777766654433

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.26  E-value=2.6e-12  Score=129.28  Aligned_cols=101  Identities=24%  Similarity=0.447  Sum_probs=90.1

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      ++.|+..+.+..+...+|-|.||.||.|.|++....||||.++... ...+.|..|+.+|+.++|||+|+++++|+.   
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt-MeveEFLkEAAvMKeikHpNLVqLLGVCT~---  334 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTH---  334 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcc-hhHHHHHHHHHHHHhhcCccHHHHhhhhcc---
Confidence            4678777888888899999999999999999999999999987543 356889999999999999999999999986   


Q ss_pred             cccceeeeeecccccCCchhhhhcccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                        ...+|+|+|||..|.|.+|+++.+.
T Consensus       335 --EpPFYIiTEfM~yGNLLdYLRecnr  359 (1157)
T KOG4278|consen  335 --EPPFYIITEFMCYGNLLDYLRECNR  359 (1157)
T ss_pred             --CCCeEEEEecccCccHHHHHHHhch
Confidence              6789999999999999999987653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=5.3e-13  Score=125.93  Aligned_cols=133  Identities=23%  Similarity=0.377  Sum_probs=76.0

Q ss_pred             CCCCeEecccCccccc----cCccccCCCCCCeEecCCccccccc----CCcccCCcchhcccceEEcCCCcCccc----
Q 042887          410 KNLQGLALVRNSLRGT----IPDTLGNLTLLNRLFLGFNNLQGNV----PSSLGNCQNLMTLSRLLDLSGNLLGGS----  477 (628)
Q Consensus       410 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~l~~~L~Ls~N~l~~~----  477 (628)
                      +.|+++...+|++...    +...|...+.|+.+.++.|.|....    ...+..+++|    +.|||.+|-++..    
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~L----evLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHL----EVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcc----eeeecccchhhhHHHHH
Confidence            4566666666655421    2233455566666666666654221    1234455555    6666666666532    


Q ss_pred             cchhhhccCCCCEeeCcCCcCcccCCccc-----cCCCCCCeEECcCceeee----ecCccccCCCCCCEEECCCCcc
Q 042887          478 IPLEVGNLRNLAEFDLSENHFSNEIPVTL-----SACTTLEYLHLQGNSFSG----SLPLSLKTLKSIKELDLSRNNL  546 (628)
Q Consensus       478 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l  546 (628)
                      +...++.+++|++|++++|.+...-...+     ...|+|+.|.+.+|.|+.    .+..++...+.|+.|+|++|.+
T Consensus       233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            23445566777777777777765433332     235677777777777763    2223344567777777777777

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.24  E-value=1.3e-11  Score=121.06  Aligned_cols=94  Identities=24%  Similarity=0.329  Sum_probs=78.9

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---------c-----chhhhHHHHHHHHhhcCCCCccc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---------K-----GAAKSFVTECEALSNVRHRNLIK  109 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---------~-----~~~~~~~~E~~~l~~l~h~nIv~  109 (628)
                      ....++|++.+.||+|.||+|-+|+...+++.||||++.+..         .     ...+...+||.+|+++.|||||+
T Consensus        93 ~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~  172 (576)
T KOG0585|consen   93 RKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVK  172 (576)
T ss_pred             ceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeE
Confidence            345678999999999999999999999999999999997632         1     12357899999999999999999


Q ss_pred             ccceeeeccccccceeeeeecccccCCchhh
Q 042887          110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDW  140 (628)
Q Consensus       110 l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~  140 (628)
                      ++++-.+   .....+|||+|||..|.+.+.
T Consensus       173 LiEvLDD---P~s~~~YlVley~s~G~v~w~  200 (576)
T KOG0585|consen  173 LIEVLDD---PESDKLYLVLEYCSKGEVKWC  200 (576)
T ss_pred             EEEeecC---cccCceEEEEEeccCCccccC
Confidence            9998554   346789999999999987643

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.24  E-value=1.5e-12  Score=127.59  Aligned_cols=106  Identities=26%  Similarity=0.418  Sum_probs=88.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..++|.+.+.+|.|+||.||+|+...+|+.||||.++... .+..-.-.||+..|+++. |||||++.++..+    ...
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d----~~~   83 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRD----NDR   83 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhc----cCc
Confidence            4578999999999999999999999999999999997653 444455689999999998 9999999999643    233


Q ss_pred             eeeeeecccccCCchhhhhccccccccccCCcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLI  156 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~  156 (628)
                      ..|+|||||++ .|++.|+++++.+++..+-.+
T Consensus        84 ~L~fVfE~Md~-NLYqLmK~R~r~fse~~irni  115 (538)
T KOG0661|consen   84 ILYFVFEFMDC-NLYQLMKDRNRLFSESDIRNI  115 (538)
T ss_pred             eEeeeHHhhhh-hHHHHHhhcCCcCCHHHHHHH
Confidence            89999999986 799999998777666555443

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.23  E-value=7.4e-12  Score=116.48  Aligned_cols=87  Identities=21%  Similarity=0.384  Sum_probs=80.7

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccceeeeeeccc
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      +.+|+|+||.|-.++...+|..||||++.+.......++.||++++...+ |+||++++++     |+++..+|+|||-|
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLief-----FEdd~~FYLVfEKm  158 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEF-----FEDDTRFYLVFEKM  158 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHH-----hcccceEEEEEecc
Confidence            67999999999999999999999999999887778889999999999996 9999999999     77899999999999


Q ss_pred             ccCCchhhhhccc
Q 042887          133 KCGSSEDWMHQSN  145 (628)
Q Consensus       133 ~~g~L~~~l~~~~  145 (628)
                      .||.+..+|.++.
T Consensus       159 ~GGplLshI~~~~  171 (463)
T KOG0607|consen  159 RGGPLLSHIQKRK  171 (463)
T ss_pred             cCchHHHHHHHhh
Confidence            9999999987654

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.23  E-value=1.5e-11  Score=124.32  Aligned_cols=94  Identities=23%  Similarity=0.384  Sum_probs=83.7

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc---chhhhHHHHHHHHhhcC-CCCcccccceeeeccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---GAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~  121 (628)
                      ....|++.+.+|+|.||.||+|+.+.+|+.+|+|.+.+...   ...+.+.+|+.+|+++. |||||+++++     |++
T Consensus        33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~-----~e~  107 (382)
T KOG0032|consen   33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDA-----FED  107 (382)
T ss_pred             ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEE-----EEc
Confidence            45679999999999999999999999999999999976543   23468899999999998 9999999999     566


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ....++|||+|.||+|.+.+...
T Consensus       108 ~~~~~lvmEL~~GGeLfd~i~~~  130 (382)
T KOG0032|consen  108 PDSVYLVMELCEGGELFDRIVKK  130 (382)
T ss_pred             CCeEEEEEEecCCchHHHHHHHc
Confidence            88999999999999999998765

>PLN03150 hypothetical protein; Provisional

Probab=99.22  E-value=2.3e-11  Score=132.24  Aligned_cols=107  Identities=28%  Similarity=0.496  Sum_probs=73.4

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887          164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS  243 (628)
Q Consensus       164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~  243 (628)
                      ++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..++++++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            66677777777777777777777777777777777767777777777777777777777766777777777777777777


Q ss_pred             ccCcccCChhhhhCCCCCcEEecccCc
Q 042887          244 NRFEGSLPLNIGFNIPNVNFLSVGQNN  270 (628)
Q Consensus       244 n~l~~~~~~~~~~~l~~L~~L~L~~N~  270 (628)
                      |.+++.+|..+.....++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            777766666655433445555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.21  E-value=1.4e-12  Score=123.20  Aligned_cols=68  Identities=19%  Similarity=0.364  Sum_probs=36.6

Q ss_pred             hhhhCCCCCCEEecccCcCcccc----cccccCCCCCCEeeccccc---CcccCCcC-------ccCCCCCCEEEeeccc
Q 042887          180 DFIANFSALEAIDISANMLGGRI----PDSLCQLRSLNYLSISENN---FSCKLPLS-------IWNISSLEIISLHSNR  245 (628)
Q Consensus       180 ~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~---i~~~~p~~-------~~~l~~L~~L~L~~n~  245 (628)
                      +....+..++.++||+|.+...-    ...+.+.++|+..++|+--   ....+|.+       +...++|++||||.|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            34556677777777777775332    2334556677777766431   11122322       2334456666666665


Q ss_pred             Cc
Q 042887          246 FE  247 (628)
Q Consensus       246 l~  247 (628)
                      +.
T Consensus       104 ~G  105 (382)
T KOG1909|consen  104 FG  105 (382)
T ss_pred             cC
Confidence            54

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.21  E-value=1.9e-11  Score=124.00  Aligned_cols=100  Identities=23%  Similarity=0.349  Sum_probs=86.9

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--chhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ......|.+.+.||+|.||+|..|++..++..||||.+++..-  .....+.+|+++|+.+.|||||+++.+     .++
T Consensus        52 ~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v-----~~t  126 (596)
T KOG0586|consen   52 SNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSV-----IET  126 (596)
T ss_pred             cccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeee-----eee
Confidence            3446789999999999999999999999999999999987642  233458999999999999999999999     566


Q ss_pred             cceeeeeecccccCCchhhhhcccccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      ....|+||||+.+|++++|+..++...
T Consensus       127 ~~~lylV~eya~~ge~~~yl~~~gr~~  153 (596)
T KOG0586|consen  127 EATLYLVMEYASGGELFDYLVKHGRMK  153 (596)
T ss_pred             cceeEEEEEeccCchhHHHHHhcccch
Confidence            899999999999999999998776443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=1.6e-11  Score=109.11  Aligned_cols=126  Identities=27%  Similarity=0.252  Sum_probs=39.0

Q ss_pred             CCCCCCeEecCCcccccccCCccc-CCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccc-cCC
Q 042887          432 NLTLLNRLFLGFNNLQGNVPSSLG-NCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTL-SAC  509 (628)
Q Consensus       432 ~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l  509 (628)
                      +...+++|+|++|.|+..  +.++ .+.+|    +.|++++|.|+..  ..+..+++|++|++++|+|+.. ...+ ..+
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L----~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~l   87 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKL----EVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNL   87 (175)
T ss_dssp             ---------------------S--TT-TT------EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-
T ss_pred             cccccccccccccccccc--cchhhhhcCC----CEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhC
Confidence            334556666666666521  1222 23334    5566666666532  2355566777777777777633 2223 346


Q ss_pred             CCCCeEECcCceeeeecC-ccccCCCCCCEEECCCCcccccC---chhhhcccCCCeEecc
Q 042887          510 TTLEYLHLQGNSFSGSLP-LSLKTLKSIKELDLSRNNLSGQI---PKYLENLLFLAYLNLS  566 (628)
Q Consensus       510 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~ls  566 (628)
                      ++|++|++++|+|..... ..+..+++|+.|+|.+|+++...   ...+..+|+|+.||-.
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            677777777777663211 34556777777777777776321   1135667777777643

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.19  E-value=1.3e-11  Score=123.84  Aligned_cols=96  Identities=28%  Similarity=0.475  Sum_probs=83.0

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      +.++....+.+.||+|.||.|..|+. ..+..||+|+++... ......|.+|+++|.+++|||||+++++|..     +
T Consensus       534 EfPRs~L~~~ekiGeGqFGEVhLCev-eg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~-----D  607 (807)
T KOG1094|consen  534 EFPRSRLRFKEKIGEGQFGEVHLCEV-EGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQ-----D  607 (807)
T ss_pred             hcchhheehhhhhcCcccceeEEEEe-cCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeec-----C
Confidence            34556677889999999999999998 346899999998764 3445889999999999999999999999985     7


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +...+++|||++|+|.+|+..+.
T Consensus       608 ePicmI~EYmEnGDLnqFl~ahe  630 (807)
T KOG1094|consen  608 DPLCMITEYMENGDLNQFLSAHE  630 (807)
T ss_pred             CchHHHHHHHhcCcHHHHHHhcc
Confidence            78899999999999999997764

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.19  E-value=1.8e-11  Score=118.13  Aligned_cols=97  Identities=27%  Similarity=0.325  Sum_probs=84.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      +.|++.+.+|.|.-|.||+++...++..+|+|++.+..   +....+...|.+||+.++||.++.++..     |++.++
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~-----fet~~~  151 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYAS-----FETDKY  151 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhhe-----eeccce
Confidence            46778899999999999999999999999999998753   4445677889999999999999999998     677999


Q ss_pred             eeeeecccccCCchhhhhccccccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      .+++||||+||+|+....+...++.
T Consensus       152 ~cl~meyCpGGdL~~LrqkQp~~~f  176 (459)
T KOG0610|consen  152 SCLVMEYCPGGDLHSLRQKQPGKRF  176 (459)
T ss_pred             eEEEEecCCCccHHHHHhhCCCCcc
Confidence            9999999999999988876665543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=6.9e-12  Score=115.70  Aligned_cols=136  Identities=27%  Similarity=0.236  Sum_probs=99.0

Q ss_pred             ccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCC
Q 042887          430 LGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSAC  509 (628)
Q Consensus       430 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  509 (628)
                      ...+..|+.+||++|.|+ .+.++..-++.+    +.|++|+|+|..  ...+..+++|+.||||+|.++ .+..+-..+
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pki----r~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KL  351 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKL----RRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKL  351 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccce----eEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhh
Confidence            344567888888888887 555666666666    788888888873  234777888888888888887 344444567


Q ss_pred             CCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccC-chhhhcccCCCeEeccCCcCcccCC
Q 042887          510 TTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQI-PKYLENLLFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       510 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~p  575 (628)
                      -+++.|.|++|.|.  .-..+..+-+|..||+++|+|.... -..++++|.|+++.|.+|++.+.+.
T Consensus       352 GNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  352 GNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             cCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            78888888888875  2345677788888888888887432 2357788888888888888876554

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.19  E-value=3.5e-11  Score=124.02  Aligned_cols=92  Identities=22%  Similarity=0.350  Sum_probs=80.0

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||||++....   ......+.+|+++++.++||||+++++++     .+...
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~-----~~~~~   75 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSF-----QDENY   75 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEE-----EcCCe
Confidence            47899999999999999999999999999999997542   23445678899999999999999999884     45788


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+|||||++|+|.+++...
T Consensus        76 ~~lv~E~~~~g~L~~~l~~~   95 (364)
T cd05599          76 LYLIMEYLPGGDMMTLLMKK   95 (364)
T ss_pred             EEEEECCCCCcHHHHHHHHc
Confidence            99999999999999998654

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=4.6e-12  Score=116.87  Aligned_cols=130  Identities=25%  Similarity=0.276  Sum_probs=78.5

Q ss_pred             cCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhccc
Q 042887          385 LVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLS  464 (628)
Q Consensus       385 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~  464 (628)
                      ...|+++|+++|.|+ .+.++..-+|.++.|++|+|.++..  +.+..+++|+.|||++|.++ ....+-..+-+.    
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI----  354 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI----  354 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE----
Confidence            344556666666665 3444555566666666666666622  23566666667777766665 233333333344    


Q ss_pred             ceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccC-CccccCCCCCCeEECcCceeee
Q 042887          465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEI-PVTLSACTTLEYLHLQGNSFSG  524 (628)
Q Consensus       465 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~  524 (628)
                      +.|.|++|.|..  -..+..+-+|..||+++|+|.... ...++++|.|+.+.|.+|.+.+
T Consensus       355 KtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  355 KTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            566777776652  224555667777777777776422 3456777888888888888773

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.18  E-value=4.6e-11  Score=118.88  Aligned_cols=93  Identities=20%  Similarity=0.302  Sum_probs=79.9

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|++....   ....+.+.+|+.++++++||||+++++.+     .+...
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~~   75 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTE-----HDQRF   75 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhh-----ccCCe
Confidence            46889999999999999999999899999999997532   23446688999999999999999999884     45788


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+||||+++|+|.+++....
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~   96 (291)
T cd05612          76 LYMLMEYVPGGELFSYLRNSG   96 (291)
T ss_pred             EEEEEeCCCCCCHHHHHHHcC
Confidence            999999999999999986543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.18  E-value=4.8e-11  Score=123.50  Aligned_cols=92  Identities=20%  Similarity=0.302  Sum_probs=79.7

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|++++++++||||+++++++     .+...
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~-----~~~~~   75 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSF-----QDAQY   75 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEE-----EcCCe
Confidence            47889999999999999999999999999999986532   23446788999999999999999999984     45788


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+||||+++|+|.+++...
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~   95 (377)
T cd05629          76 LYLIMEFLPGGDLMTMLIKY   95 (377)
T ss_pred             eEEEEeCCCCCcHHHHHHhc
Confidence            99999999999999988643

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.18  E-value=4.9e-11  Score=115.84  Aligned_cols=104  Identities=30%  Similarity=0.437  Sum_probs=85.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..+|...+.||+|+||.||++.+.++|+.+|||.+........+.+.+|+.+|.+++|||||++++....   ......+
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~---~~~~~~~   92 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSS---RENDEYN   92 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCcccc---ccCeeeE
Confidence            4457888999999999999999998899999999987643336778999999999999999999997432   1114789


Q ss_pred             eeecccccCCchhhhhccccccccccC
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKLEAGNL  153 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~~~~~  153 (628)
                      +.|||+++|++.+++.+.++.+++..+
T Consensus        93 i~mEy~~~GsL~~~~~~~g~~l~E~~v  119 (313)
T KOG0198|consen   93 IFMEYAPGGSLSDLIKRYGGKLPEPLV  119 (313)
T ss_pred             eeeeccCCCcHHHHHHHcCCCCCHHHH
Confidence            999999999999999887755554433

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.17  E-value=1.9e-11  Score=123.45  Aligned_cols=109  Identities=25%  Similarity=0.415  Sum_probs=91.7

Q ss_pred             CCCCcccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccc
Q 042887           33 QQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKI  110 (628)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l  110 (628)
                      ......+..+|....+.+.+..+||+|+||+||+|+|-.+   ||||++....  ....+.|..|+.++++.+|.||+-+
T Consensus       377 ~r~~s~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whGd---VAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLF  453 (678)
T KOG0193|consen  377 NRQASDSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHGD---VAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLF  453 (678)
T ss_pred             cccCCccccccccCHHHhhccceeccccccceeecccccc---eEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheee
Confidence            3445556678888888999999999999999999999544   9999997653  4467889999999999999999999


Q ss_pred             cceeeeccccccceeeeeecccccCCchhhhhcccccccc
Q 042887          111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEA  150 (628)
Q Consensus       111 ~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~  150 (628)
                      .++|+.      ..+.+|+.+|+|.+|+.+++....+++.
T Consensus       454 MG~~~~------p~~AIiTqwCeGsSLY~hlHv~etkfdm  487 (678)
T KOG0193|consen  454 MGACMN------PPLAIITQWCEGSSLYTHLHVQETKFDM  487 (678)
T ss_pred             ehhhcC------CceeeeehhccCchhhhhccchhhhhhH
Confidence            999873      4448999999999999999887766654

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.17  E-value=5.6e-11  Score=123.08  Aligned_cols=91  Identities=18%  Similarity=0.238  Sum_probs=79.4

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .|+..+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.+++.++||||+++++++.     +....
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~-----~~~~~   76 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQ-----DKDNL   76 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEe-----cCCEE
Confidence            5888899999999999999999999999999997542   334567889999999999999999999854     47789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      |+||||+++|+|.+++...
T Consensus        77 ~lv~E~~~gg~L~~~l~~~   95 (381)
T cd05626          77 YFVMDYIPGGDMMSLLIRM   95 (381)
T ss_pred             EEEEecCCCCcHHHHHHhc
Confidence            9999999999999988654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=2.6e-11  Score=123.69  Aligned_cols=96  Identities=21%  Similarity=0.363  Sum_probs=85.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .+.|++++.+|+|+.|+|-.|++.+||+.+|||++.+..   ......+.+|+-+|+-+.||||++++++     |++..
T Consensus        11 iGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydV-----we~~~   85 (786)
T KOG0588|consen   11 IGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDV-----WENKQ   85 (786)
T ss_pred             ccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeee-----eccCc
Confidence            467999999999999999999999999999999997652   3345678999999999999999999999     56789


Q ss_pred             eeeeeecccccCCchhhhhccccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      ..|+|.||+++|.|++++.+++..
T Consensus        86 ~lylvlEyv~gGELFdylv~kG~l  109 (786)
T KOG0588|consen   86 HLYLVLEYVPGGELFDYLVRKGPL  109 (786)
T ss_pred             eEEEEEEecCCchhHHHHHhhCCC
Confidence            999999999999999999877643

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.16  E-value=6.4e-11  Score=122.57  Aligned_cols=92  Identities=18%  Similarity=0.253  Sum_probs=79.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .+|++.+.||+|+||.||+|++..+++.||+|++....   ......+.+|++++++++||||+++++.+     .....
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~-----~~~~~   75 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSF-----QDKDN   75 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEE-----EcCCE
Confidence            36899999999999999999999999999999986532   23446688999999999999999999884     45789


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+|||||++|+|.+++.+.
T Consensus        76 ~~lv~E~~~~g~L~~~i~~~   95 (376)
T cd05598          76 LYFVMDYIPGGDMMSLLIRL   95 (376)
T ss_pred             EEEEEeCCCCCcHHHHHHhc
Confidence            99999999999999998654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.15  E-value=6.9e-11  Score=119.79  Aligned_cols=93  Identities=18%  Similarity=0.303  Sum_probs=80.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.++++++||||+++++++.     ..+
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~   91 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQ-----DEN   91 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEE-----cCC
Confidence            467999999999999999999999999999999997542   234467889999999999999999999854     478


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+||||+++|+|.+++...
T Consensus        92 ~~~lv~e~~~~~~L~~~l~~~  112 (329)
T PTZ00263         92 RVYFLLEFVVGGELFTHLRKA  112 (329)
T ss_pred             EEEEEEcCCCCChHHHHHHHc
Confidence            899999999999999988654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=4.4e-12  Score=123.08  Aligned_cols=232  Identities=18%  Similarity=0.142  Sum_probs=153.6

Q ss_pred             EEccCCccccccchhh----hCCCCCCEEecccCcCccccc--ccccCCCCCCEeecccccCcccC--CcCccCCCCCCE
Q 042887          167 IDVGDNQLIGKFPDFI----ANFSALEAIDISANMLGGRIP--DSLCQLRSLNYLSISENNFSCKL--PLSIWNISSLEI  238 (628)
Q Consensus       167 L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~i~~~~--p~~~~~l~~L~~  238 (628)
                      +.+++-++...--+.+    +++++|++..|.+.... ..+  .....+++++.||||+|-+....  ..-...+++|+.
T Consensus        98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~  176 (505)
T KOG3207|consen   98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLEN  176 (505)
T ss_pred             hhhcCceeEEecHHHHHHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchh
Confidence            3444444444433333    47889999999998876 333  36778999999999999877432  233567999999


Q ss_pred             EEeecccCcccCChhhhhCCCCCcEEecccCcccccc-cccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887          239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSL-PHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN  317 (628)
Q Consensus       239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n  317 (628)
                      |+|+.|.+..-........++.|+.|.|+.|.++... ......+++|+.|+|..|....+......-+..|++|||++|
T Consensus       177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N  256 (505)
T KOG3207|consen  177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN  256 (505)
T ss_pred             cccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence            9999999974333334445899999999999998533 234567899999999999644455556667889999999999


Q ss_pred             cCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccc
Q 042887          318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ  397 (628)
Q Consensus       318 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  397 (628)
                      ++-+.+     .......++.|+.|.++.+.+..+......       .            -+-....++|++|++..|+
T Consensus       257 ~li~~~-----~~~~~~~l~~L~~Lnls~tgi~si~~~d~~-------s------------~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  257 NLIDFD-----QGYKVGTLPGLNQLNLSSTGIASIAEPDVE-------S------------LDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cccccc-----cccccccccchhhhhccccCcchhcCCCcc-------c------------hhhhcccccceeeecccCc
Confidence            987643     334567778888888888877543211110       0            0012334555666666665


Q ss_pred             cccc-CCcCCCCCCCCCeEecccCccc
Q 042887          398 LTGT-IPHAIGELKNLQGLALVRNSLR  423 (628)
Q Consensus       398 l~~~-~~~~~~~l~~L~~L~L~~n~l~  423 (628)
                      |.+. .-..+..+++|+.|.+..|.+.
T Consensus       313 I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  313 IRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccccccchhhccchhhhhhccccccc
Confidence            5321 1122344555666666666655

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.15  E-value=8.6e-11  Score=119.44  Aligned_cols=92  Identities=24%  Similarity=0.406  Sum_probs=79.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+++.||+|+++...   ......+.+|++++..++||||+++++++.     ....
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~-----~~~~   75 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQ-----DDEY   75 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEE-----cCCE
Confidence            36899999999999999999999999999999997542   234567889999999999999999998854     4778


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+||||+++|+|.+++...
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~   95 (333)
T cd05600          76 LYLAMEYVPGGDFRTLLNNL   95 (333)
T ss_pred             EEEEEeCCCCCCHHHHHHHc
Confidence            99999999999999998643

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.14  E-value=9e-11  Score=120.72  Aligned_cols=92  Identities=21%  Similarity=0.287  Sum_probs=79.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....   ......+.+|+.++.+++||+|+++++.+     ++...
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~-----~~~~~   75 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSF-----QDKLN   75 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEE-----ecCCe
Confidence            47899999999999999999999999999999997542   23345678899999999999999999884     45778


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+|||||++|+|.+++.+.
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~   95 (363)
T cd05628          76 LYLIMEFLPGGDMMTLLMKK   95 (363)
T ss_pred             EEEEEcCCCCCcHHHHHHhc
Confidence            99999999999999998654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.14  E-value=1e-10  Score=118.73  Aligned_cols=93  Identities=23%  Similarity=0.337  Sum_probs=80.0

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+++.||+|++.+.   .....+.+.+|+.++..++|+||+++++++     ++...
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~-----~~~~~   75 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAF-----QDENN   75 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEE-----ecCCe
Confidence            4789999999999999999999999999999999753   223445688899999999999999999984     45788


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+||||+++|+|.+++.+..
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~   96 (331)
T cd05597          76 LYLVMDYYVGGDLLTLLSKFE   96 (331)
T ss_pred             EEEEEecCCCCcHHHHHHHhc
Confidence            999999999999999986543

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.14  E-value=2.6e-11  Score=119.66  Aligned_cols=98  Identities=22%  Similarity=0.322  Sum_probs=85.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--chhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      +.+-|.+.+.||+|.|++|-.|++.-+|+.||||++.+..-  .....+.+|++.|+-++|||||++|++     .++..
T Consensus        16 IAGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEV-----iDTQT   90 (864)
T KOG4717|consen   16 IAGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEV-----IDTQT   90 (864)
T ss_pred             eeeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeeh-----hcccc
Confidence            34668999999999999999999999999999999987643  334568899999999999999999999     66788


Q ss_pred             eeeeeecccccCCchhhhhcccccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      ..|+|.|...+|++++||-++...+
T Consensus        91 KlyLiLELGD~GDl~DyImKHe~Gl  115 (864)
T KOG4717|consen   91 KLYLILELGDGGDLFDYIMKHEEGL  115 (864)
T ss_pred             eEEEEEEecCCchHHHHHHhhhccc
Confidence            9999999999999999998776544

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.14  E-value=5.3e-11  Score=123.24  Aligned_cols=100  Identities=20%  Similarity=0.398  Sum_probs=82.4

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCC-----CcEEEEEEeeccc-cchhhhHHHHHHHHhhcC-CCCccccccee
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGET-----GTTVAVKVMNLKQ-KGAAKSFVTECEALSNVR-HRNLIKIITVC  114 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~-----~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~  114 (628)
                      .+..+.++|.+.+.||+|+||.||+|.+...     +..||+|++.... ....+.+.+|+.+++++. ||||+++++++
T Consensus        31 ~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~  110 (400)
T cd05105          31 RWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGAC  110 (400)
T ss_pred             ceeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEE
Confidence            4556678999999999999999999987433     3469999996543 334467899999999996 99999999996


Q ss_pred             eeccccccceeeeeecccccCCchhhhhcccc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      .     .....|+|||||++|+|.+++.+...
T Consensus       111 ~-----~~~~~~lv~Ey~~~g~L~~~l~~~~~  137 (400)
T cd05105         111 T-----KSGPIYIITEYCFYGDLVNYLHKNRD  137 (400)
T ss_pred             c-----cCCceEEEEEecCCCcHHHHHHHhhh
Confidence            4     36789999999999999999976543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.14  E-value=5.3e-11  Score=126.03  Aligned_cols=98  Identities=22%  Similarity=0.331  Sum_probs=81.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecc-ccc-cc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSID-FKG-VD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~-~~~-~~  123 (628)
                      ..++++.+.|.+|||+.||.|.....|..||+|++-..++...+.+.+|+++|+.|+ |+|||.+++...... ... .-
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            456788899999999999999998877999999997777777888999999999997 999999999533211 112 35


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .+.+.||||.||.|-++|...
T Consensus       116 EvllLmEyC~gg~Lvd~mn~R  136 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTR  136 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHH
Confidence            678899999999999999744

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.14  E-value=8.7e-11  Score=121.81  Aligned_cols=91  Identities=16%  Similarity=0.257  Sum_probs=79.2

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .|+..+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|++++++++||||+++++.+.     +....
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~-----~~~~~   76 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQ-----DKDNL   76 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEE-----eCCEE
Confidence            5888999999999999999999999999999997542   334567889999999999999999999854     47789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      |+|||||++|+|.+++.+.
T Consensus        77 ~lv~E~~~gg~L~~~l~~~   95 (382)
T cd05625          77 YFVMDYIPGGDMMSLLIRM   95 (382)
T ss_pred             EEEEeCCCCCcHHHHHHhc
Confidence            9999999999999988654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.13  E-value=3.6e-11  Score=119.95  Aligned_cols=96  Identities=25%  Similarity=0.427  Sum_probs=83.9

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhc-CCCCcccccceeeecccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~  120 (628)
                      ....+|.+++.||+|+|++|++|+.+++++.||||++.+.   .+.-.+-+.+|-.+|..| .||.||+++..     |+
T Consensus        70 k~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~T-----FQ  144 (604)
T KOG0592|consen   70 KTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFT-----FQ  144 (604)
T ss_pred             CChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEE-----ee
Confidence            3457899999999999999999999999999999999764   233455677899999999 79999999988     67


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +....|+|+||+++|+|.++|++-+
T Consensus       145 D~~sLYFvLe~A~nGdll~~i~K~G  169 (604)
T KOG0592|consen  145 DEESLYFVLEYAPNGDLLDLIKKYG  169 (604)
T ss_pred             cccceEEEEEecCCCcHHHHHHHhC
Confidence            7999999999999999999998765

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.13  E-value=5.5e-11  Score=130.09  Aligned_cols=94  Identities=27%  Similarity=0.499  Sum_probs=80.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCc-----EEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGT-----TVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~-----~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      +...+..+.||+|+||.||+|.+.....     .||+|.+++. +.+....|.+|+.+|++++|||||+++++|.+    
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~----  766 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD----  766 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecC----
Confidence            4566778899999999999999864332     3999998765 45677899999999999999999999999864    


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       ....++++|||++|||..|+++.+
T Consensus       767 -~~~~~i~leyM~gGDL~sflr~~r  790 (1025)
T KOG1095|consen  767 -SGPPLILLEYMEGGDLLSFLRESR  790 (1025)
T ss_pred             -CCCcEEEehhcccCcHHHHHHhcc
Confidence             677899999999999999998775

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.13  E-value=6.1e-11  Score=122.36  Aligned_cols=99  Identities=22%  Similarity=0.383  Sum_probs=81.2

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEE-----CCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVC  114 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~-----~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~  114 (628)
                      ++..+.++|++.+.||+|+||.||+|.+     ..++..||+|+++... ....+.+.+|+.+++.+ +||||+++++++
T Consensus        29 ~~~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~  108 (375)
T cd05104          29 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGAC  108 (375)
T ss_pred             ccccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeee
Confidence            3445567899999999999999999974     3456789999986532 33456789999999999 799999999986


Q ss_pred             eeccccccceeeeeecccccCCchhhhhccc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .     .....++|||||++|+|.+++....
T Consensus       109 ~-----~~~~~~lv~E~~~~g~L~~~l~~~~  134 (375)
T cd05104         109 T-----VGGPTLVITEYCCYGDLLNFLRRKR  134 (375)
T ss_pred             c-----cCCcceeeehhccCCcHHHHHHhcc
Confidence            4     4678899999999999999997654

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.13  E-value=8.9e-12  Score=134.14  Aligned_cols=109  Identities=18%  Similarity=0.288  Sum_probs=92.9

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeee
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSS  116 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~  116 (628)
                      ..+....+++|++.++||+|+||.|..++++.+++.||+|++++.   .+....-|..|-++|..-..+.||+++.+   
T Consensus        67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyA---  143 (1317)
T KOG0612|consen   67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYA---  143 (1317)
T ss_pred             HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHH---
Confidence            344555678999999999999999999999999999999999874   34455667888889999999999999999   


Q ss_pred             ccccccceeeeeecccccCCchhhhhccccccccccCC
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLG  154 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~  154 (628)
                        |++....||||||++|||+...|.+.. .+++.|..
T Consensus       144 --FQD~~~LYlVMdY~pGGDlltLlSk~~-~~pE~~Ar  178 (1317)
T KOG0612|consen  144 --FQDERYLYLVMDYMPGGDLLTLLSKFD-RLPEDWAR  178 (1317)
T ss_pred             --hcCccceEEEEecccCchHHHHHhhcC-CChHHHHH
Confidence              777999999999999999999998776 66655443

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.13  E-value=4.6e-11  Score=121.73  Aligned_cols=98  Identities=20%  Similarity=0.390  Sum_probs=79.3

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceeee
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCSS  116 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~  116 (628)
                      ..+.++|++.+.||+|+||.||+|.+.     .+++.||+|++.... ....+.+.+|+.++..+ +||||+++++++..
T Consensus         3 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~   82 (338)
T cd05102           3 EFPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTK   82 (338)
T ss_pred             ccchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecC
Confidence            345678999999999999999999852     345689999986532 23456789999999999 89999999998642


Q ss_pred             ccccccceeeeeecccccCCchhhhhccc
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                          .....+++|||+++|+|.+++....
T Consensus        83 ----~~~~~~lv~ey~~~g~L~~~l~~~~  107 (338)
T cd05102          83 ----PNGPLMVIVEFCKYGNLSNFLRAKR  107 (338)
T ss_pred             ----CCCceEEEEecCCCCcHHHHHHhcc
Confidence                3456899999999999999997654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.12  E-value=1.6e-10  Score=117.31  Aligned_cols=93  Identities=18%  Similarity=0.277  Sum_probs=81.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|.+..+++.+|+|.+.... ....+.+.+|++++++++||||+++++++.+     .+..
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~   78 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DGEI   78 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEE-----CCEE
Confidence            468999999999999999999999899999999987642 3345678999999999999999999999654     6789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|+|.+++...
T Consensus        79 ~lv~e~~~~~~L~~~l~~~   97 (333)
T cd06650          79 SICMEHMDGGSLDQVLKKA   97 (333)
T ss_pred             EEEEecCCCCcHHHHHHHc
Confidence            9999999999999998653

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.12  E-value=4.8e-11  Score=119.08  Aligned_cols=94  Identities=18%  Similarity=0.332  Sum_probs=81.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|...+++|+|+||+++.++++.+++.|++|.+....  ....+...+|+.++++++|||||.+.+.+     ...+.
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~-----~~~~~   77 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSF-----EEDGQ   77 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccch-----hcCCc
Confidence            468999999999999999999999999999999997653  33445678999999999999999999995     44666


Q ss_pred             -eeeeecccccCCchhhhhccc
Q 042887          125 -KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 -~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       .++||+||+||++.+.+.+..
T Consensus        78 ~l~Ivm~Y~eGg~l~~~i~~~k   99 (426)
T KOG0589|consen   78 LLCIVMEYCEGGDLAQLIKEQK   99 (426)
T ss_pred             eEEEEEeecCCCCHHHHHHHHh
Confidence             999999999999999997666

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.12  E-value=9.7e-11  Score=114.20  Aligned_cols=97  Identities=20%  Similarity=0.286  Sum_probs=84.6

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-chhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      +....++|++.++||.|.-+.||+|++..+++.||||++....- .....+.+|+..|+.++||||++++..+.     .
T Consensus        21 ~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFv-----v   95 (516)
T KOG0582|consen   21 FPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFV-----V   95 (516)
T ss_pred             CCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEE-----e
Confidence            33456789999999999999999999999999999999987542 33678999999999999999999988854     4


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .+..|.||.||.+|++.+.++..
T Consensus        96 ~~~LWvVmpfMa~GS~ldIik~~  118 (516)
T KOG0582|consen   96 DSELWVVMPFMAGGSLLDIIKTY  118 (516)
T ss_pred             cceeEEeehhhcCCcHHHHHHHH
Confidence            88999999999999999988654

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.12  E-value=1.7e-10  Score=117.13  Aligned_cols=93  Identities=18%  Similarity=0.257  Sum_probs=81.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|++..+|..||+|.+.... ....+.+.+|++++++++||||+++++++..     ....
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~   78 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DGEI   78 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----CCEE
Confidence            468999999999999999999999999999999997642 3345679999999999999999999998643     6789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|+|.+++...
T Consensus        79 ~lv~e~~~~~~L~~~l~~~   97 (331)
T cd06649          79 SICMEHMDGGSLDQVLKEA   97 (331)
T ss_pred             EEEeecCCCCcHHHHHHHc
Confidence            9999999999999998653

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.12  E-value=1.7e-11  Score=123.25  Aligned_cols=116  Identities=24%  Similarity=0.376  Sum_probs=96.1

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      +...|..-..||+|+-|.||.|....+++.||||.+........+-+..|+.+|+..+|+|||.+++.+.     ..+..
T Consensus       271 P~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Syl-----v~deL  345 (550)
T KOG0578|consen  271 PRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYL-----VGDEL  345 (550)
T ss_pred             hhhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhc-----cccee
Confidence            4567888889999999999999999999999999998876666677899999999999999999999854     46889


Q ss_pred             eeeecccccCCchhhhhccccccccccCCccccCCcCcccEEE
Q 042887          126 ALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMID  168 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  168 (628)
                      |.||||++||+|.+.+...  .++++....+|+.-+..|+.|+
T Consensus       346 WVVMEym~ggsLTDvVt~~--~~~E~qIA~Icre~l~aL~fLH  386 (550)
T KOG0578|consen  346 WVVMEYMEGGSLTDVVTKT--RMTEGQIAAICREILQGLKFLH  386 (550)
T ss_pred             EEEEeecCCCchhhhhhcc--cccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888644  3566666666665555555444

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.10  E-value=1.2e-10  Score=114.19  Aligned_cols=94  Identities=19%  Similarity=0.416  Sum_probs=78.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..+|++.+.||+|+||.||+|.+.   ..+..||+|.++... ......+.+|+.++++++||||+++++.+.     ..
T Consensus         4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~   78 (266)
T cd05064           4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVIT-----RG   78 (266)
T ss_pred             hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEe-----cC
Confidence            356889999999999999999875   345689999987642 334467899999999999999999999854     46


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ...++||||+++|++.+++....
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~~  101 (266)
T cd05064          79 NTMMIVTEYMSNGALDSFLRKHE  101 (266)
T ss_pred             CCcEEEEEeCCCCcHHHHHHhCC
Confidence            78999999999999999987643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.10  E-value=1.3e-10  Score=119.41  Aligned_cols=93  Identities=16%  Similarity=0.312  Sum_probs=80.2

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++.+..   ....+.+.+|+.+++.++||||+++++++     ...
T Consensus        41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~-----~~~  115 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAF-----QDD  115 (370)
T ss_pred             CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEE-----EcC
Confidence            4578999999999999999999999999999999997532   23345678899999999999999999884     457


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...|+|||||++|+|.+++..
T Consensus       116 ~~~~lv~Ey~~gg~L~~~l~~  136 (370)
T cd05621         116 KYLYMVMEYMPGGDLVNLMSN  136 (370)
T ss_pred             CEEEEEEcCCCCCcHHHHHHh
Confidence            889999999999999998864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.10  E-value=1.9e-10  Score=116.70  Aligned_cols=93  Identities=20%  Similarity=0.310  Sum_probs=79.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||++++..+++.||+|++....   ......+.+|+.++..++|++|+++++++     ++...
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~-----~~~~~   75 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAF-----QDENY   75 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----EcCCE
Confidence            47899999999999999999999999999999987532   23345578889999999999999999884     45788


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+||||+++|+|.+++.+..
T Consensus        76 ~~lv~Ey~~gg~L~~~l~~~~   96 (331)
T cd05624          76 LYLVMDYYVGGDLLTLLSKFE   96 (331)
T ss_pred             EEEEEeCCCCCcHHHHHHHhc
Confidence            999999999999999997643

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.09  E-value=6.4e-11  Score=115.31  Aligned_cols=93  Identities=27%  Similarity=0.363  Sum_probs=81.9

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..|...+.||+|+||.||+|.+.++++.||+|++.... +...+.+.+|+.++..++++||.++++++..     ....+
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~-----g~~Lw   87 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLK-----GTKLW   87 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheee-----cccHH
Confidence            45677789999999999999999999999999998764 4556889999999999999999999999654     77899


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||.||++.+.++...
T Consensus        88 iiMey~~gGsv~~lL~~~~  106 (467)
T KOG0201|consen   88 IIMEYCGGGSVLDLLKSGN  106 (467)
T ss_pred             HHHHHhcCcchhhhhccCC
Confidence            9999999999999886554

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.09  E-value=1.4e-10  Score=114.89  Aligned_cols=96  Identities=22%  Similarity=0.388  Sum_probs=83.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      +.++|++.+.||+|+||.||+|.+..+++.||+|..........+.+.+|++++++++||||+++++.+.     .....
T Consensus         3 ~~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~   77 (280)
T cd06611           3 PNDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYF-----YENKL   77 (280)
T ss_pred             chhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEe-----cCCeE
Confidence            3567999999999999999999998889999999997665555678999999999999999999999854     47788


Q ss_pred             eeeecccccCCchhhhhcccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      |+||||++++++.+++.+...
T Consensus        78 ~lv~e~~~~~~L~~~~~~~~~   98 (280)
T cd06611          78 WILIEFCDGGALDSIMLELER   98 (280)
T ss_pred             EEEeeccCCCcHHHHHHHhcC
Confidence            999999999999999876443

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.08  E-value=1.6e-10  Score=118.79  Aligned_cols=92  Identities=24%  Similarity=0.400  Sum_probs=80.2

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhc-CCCCcccccceeeecccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~  120 (628)
                      ...++|.+.+++|+|+||+|+.|..+.+++.||||++++.   .+.+++....|.+++.-. +||.+++++..     |+
T Consensus       365 ~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~-----fQ  439 (694)
T KOG0694|consen  365 LTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSC-----FQ  439 (694)
T ss_pred             ccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccc-----cc
Confidence            3457899999999999999999999999999999999875   356778888999888777 59999999998     78


Q ss_pred             ccceeeeeecccccCCchhhh
Q 042887          121 GVDFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l  141 (628)
                      +..+.|+||||+.|||+..+.
T Consensus       440 T~~~l~fvmey~~Ggdm~~~~  460 (694)
T KOG0694|consen  440 TKEHLFFVMEYVAGGDLMHHI  460 (694)
T ss_pred             cCCeEEEEEEecCCCcEEEEE
Confidence            899999999999999954333

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.08  E-value=1.8e-10  Score=118.68  Aligned_cols=99  Identities=18%  Similarity=0.308  Sum_probs=83.3

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeee
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSS  116 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~  116 (628)
                      ..+.....++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.+++.++||||+++++++  
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~--  112 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAF--  112 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEE--
Confidence            3344455689999999999999999999999999999999986532   23345678899999999999999999885  


Q ss_pred             ccccccceeeeeecccccCCchhhhhc
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                         ......|+|||||++|+|.+++..
T Consensus       113 ---~~~~~~~lv~Ey~~gg~L~~~~~~  136 (371)
T cd05622         113 ---QDDRYLYMVMEYMPGGDLVNLMSN  136 (371)
T ss_pred             ---EcCCEEEEEEcCCCCCcHHHHHHh
Confidence               447889999999999999998864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.08  E-value=2.5e-10  Score=117.33  Aligned_cols=92  Identities=21%  Similarity=0.307  Sum_probs=79.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|+..+.||+|+||.||+|++..+++.||+|++....   ......+.+|+.++..++||+|+++++.+     ++...
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~-----~~~~~   75 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSF-----QDKRN   75 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEE-----EcCCE
Confidence            46888999999999999999999999999999997532   33456788899999999999999999884     45788


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+|||||++|+|.+++.+.
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~   95 (360)
T cd05627          76 LYLIMEFLPGGDMMTLLMKK   95 (360)
T ss_pred             EEEEEeCCCCccHHHHHHhc
Confidence            99999999999999998654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.08  E-value=1.4e-10  Score=119.42  Aligned_cols=93  Identities=17%  Similarity=0.322  Sum_probs=79.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.+++.++||||+++++++     ++.
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~-----~~~  115 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAF-----QDD  115 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEE-----ecC
Confidence            3467999999999999999999999999999999997532   23345578899999999999999999884     457


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...|+||||+++|+|.+++..
T Consensus       116 ~~~~lv~Ey~~gg~L~~~l~~  136 (370)
T cd05596         116 KYLYMVMEYMPGGDLVNLMSN  136 (370)
T ss_pred             CEEEEEEcCCCCCcHHHHHHh
Confidence            889999999999999998864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.08  E-value=4e-10  Score=110.70  Aligned_cols=93  Identities=23%  Similarity=0.334  Sum_probs=80.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|+...........+.+|+.++++++||||+++++.+.     .....+
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~-----~~~~~~   82 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYL-----SREKLW   82 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEE-----eCCEEE
Confidence            467999999999999999999998899999999997654444567889999999999999999999854     367889


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +||||+++++|.+++.+.
T Consensus        83 iv~e~~~~~~L~~~~~~~  100 (267)
T cd06646          83 ICMEYCGGGSLQDIYHVT  100 (267)
T ss_pred             EEEeCCCCCcHHHHHHhc
Confidence            999999999999988643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.07  E-value=1.4e-10  Score=120.14  Aligned_cols=99  Identities=21%  Similarity=0.437  Sum_probs=81.6

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcC-CCCccccccee
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVR-HRNLIKIITVC  114 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~  114 (628)
                      .+..+.++|.+.+.||+|+||.||+|.+.     ..++.||+|+++... ....+.+.+|+.+|..+. |||||++++++
T Consensus        31 ~~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~  110 (401)
T cd05107          31 AWEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGAC  110 (401)
T ss_pred             cceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence            35566778999999999999999999964     344679999997543 233457889999999997 99999999986


Q ss_pred             eeccccccceeeeeecccccCCchhhhhccc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..     .+..++|||||++|+|.+++....
T Consensus       111 ~~-----~~~~~iv~E~~~~g~L~~~l~~~~  136 (401)
T cd05107         111 TK-----GGPIYIITEYCRYGDLVDYLHRNK  136 (401)
T ss_pred             cc-----CCCcEEEEeccCCCcHHHHHHhcc
Confidence            53     567899999999999999997654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.07  E-value=2.3e-10  Score=116.30  Aligned_cols=94  Identities=17%  Similarity=0.297  Sum_probs=78.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCC-cEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETG-TTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~-~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..++|++.+.||+|+||.||+|.+..++ ..||+|.+....   ....+.+.+|+.+++.++||||+++++++.     +
T Consensus        28 ~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~-----~  102 (340)
T PTZ00426         28 KYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFK-----D  102 (340)
T ss_pred             ChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEE-----e
Confidence            3457999999999999999999976554 689999986532   334567889999999999999999999854     4


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ....|+||||+++|+|.+++...
T Consensus       103 ~~~~~lv~Ey~~~g~L~~~i~~~  125 (340)
T PTZ00426        103 ESYLYLVLEFVIGGEFFTFLRRN  125 (340)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHc
Confidence            77899999999999999998654

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.07  E-value=3e-10  Score=115.33  Aligned_cols=96  Identities=23%  Similarity=0.308  Sum_probs=81.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||+|+++...   ....+.+.+|+.+++.++||||+++++++     .....
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~-----~~~~~   75 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAF-----QDKDN   75 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEE-----ecCCe
Confidence            46899999999999999999999999999999997642   23445688899999999999999999884     34678


Q ss_pred             eeeeecccccCCchhhhhcccccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      .|+||||+++|+|.+++.+....+
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~~~l   99 (330)
T cd05601          76 LYLVMEYQPGGDLLSLLNRYEDQF   99 (330)
T ss_pred             EEEEECCCCCCCHHHHHHHhcCCC
Confidence            999999999999999997653333

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.07  E-value=3.8e-12  Score=114.03  Aligned_cols=91  Identities=19%  Similarity=0.370  Sum_probs=79.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .+.|++.++||+|.|+.||++.+..+|+.+|+|++...  +....+.+.+|+++.+.++|||||++.+.     +...++
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~t-----i~~~~~   84 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDS-----IQEESF   84 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhh-----hcccce
Confidence            35788889999999999999999999999999999653  34467889999999999999999999998     455899


Q ss_pred             eeeeecccccCCchhhhh
Q 042887          125 KALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~  142 (628)
                      .|+|+|+|.|+++..-|-
T Consensus        85 ~ylvFe~m~G~dl~~eIV  102 (355)
T KOG0033|consen   85 HYLVFDLVTGGELFEDIV  102 (355)
T ss_pred             eEEEEecccchHHHHHHH
Confidence            999999999999965543

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.06  E-value=2.7e-10  Score=114.17  Aligned_cols=93  Identities=27%  Similarity=0.463  Sum_probs=76.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECC----------------CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGE----------------TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIK  109 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~----------------~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~  109 (628)
                      .++|++.+.||+|+||.||+|.+..                ++..||+|.+.... ......|.+|+.++.+++||||++
T Consensus         4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~   83 (304)
T cd05096           4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIR   83 (304)
T ss_pred             hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeE
Confidence            4678999999999999999998632                33479999987542 334567999999999999999999


Q ss_pred             ccceeeeccccccceeeeeecccccCCchhhhhcc
Q 042887          110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       110 l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      +++++.+     ....+++|||+++|+|.+++...
T Consensus        84 ~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~  113 (304)
T cd05096          84 LLGVCVD-----EDPLCMITEYMENGDLNQFLSSH  113 (304)
T ss_pred             EEEEEec-----CCceEEEEecCCCCcHHHHHHhc
Confidence            9998643     56789999999999999998654

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.06  E-value=3.2e-10  Score=116.23  Aligned_cols=92  Identities=22%  Similarity=0.374  Sum_probs=80.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||+|++....   ......+.+|++++..++||||+++++++     .....
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~-----~~~~~   75 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSF-----QDEEH   75 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhhe-----ecCCe
Confidence            46899999999999999999999999999999997542   24456788999999999999999999884     45788


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||+++|+|.+++...
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~   95 (350)
T cd05573          76 LYLVMEYMPGGDLMNLLIRK   95 (350)
T ss_pred             EEEEEcCCCCCCHHHHHHHc
Confidence            99999999999999998755

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.06  E-value=1.9e-11  Score=127.30  Aligned_cols=85  Identities=24%  Similarity=0.269  Sum_probs=37.4

Q ss_pred             cCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCC
Q 042887          231 WNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLS  310 (628)
Q Consensus       231 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  310 (628)
                      ..+..++.++++.|.+. .+-..+. .+.+|+.|++.+|+|..+. ..+..+++|++|++++|+|+.+.+  +..++.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~~~l~-~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~  143 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KILNHLS-KLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLK  143 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhhcccc-cccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchh
Confidence            34455555555555554 2111121 2455555555555555221 113444445555555555443322  23333444


Q ss_pred             EEEccCCcCC
Q 042887          311 RLFLSKNNLG  320 (628)
Q Consensus       311 ~L~L~~n~l~  320 (628)
                      .|++++|.|+
T Consensus       144 ~L~l~~N~i~  153 (414)
T KOG0531|consen  144 ELNLSGNLIS  153 (414)
T ss_pred             hheeccCcch
Confidence            4444444443

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.05  E-value=4.6e-10  Score=111.54  Aligned_cols=93  Identities=22%  Similarity=0.477  Sum_probs=78.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|.++... ......+.+|+.++++++||||+++++++     ......
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~-----~~~~~~   78 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDII-----HTERCL   78 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEE-----cCCCeE
Confidence            467999999999999999999999999999999987543 23345678999999999999999999984     446789


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||+++ ++.+++....
T Consensus        79 ~lv~e~~~~-~l~~~l~~~~   97 (288)
T cd07871          79 TLVFEYLDS-DLKQYLDNCG   97 (288)
T ss_pred             EEEEeCCCc-CHHHHHHhcC
Confidence            999999985 8888886543

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.05  E-value=4.7e-10  Score=112.63  Aligned_cols=92  Identities=17%  Similarity=0.236  Sum_probs=79.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++|++.+.||+|+||.||+|.+..++..+|+|.+.... .....++.+|++++++++||||+++++++.     ..+..+
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~   75 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFY-----SDGEIS   75 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----eCCEEE
Confidence            36899999999999999999999999999999987542 233456889999999999999999999854     478899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||+++++|.+++...
T Consensus        76 lv~ey~~~~~L~~~l~~~   93 (308)
T cd06615          76 ICMEHMDGGSLDQVLKKA   93 (308)
T ss_pred             EEeeccCCCcHHHHHHhc
Confidence            999999999999998654

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.05  E-value=4.5e-10  Score=123.79  Aligned_cols=91  Identities=19%  Similarity=0.305  Sum_probs=79.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||+|++....   ....+++.+|++++++++||||+++++++.+     .+.
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d-----~~~   76 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSD-----GDP   76 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEee-----CCE
Confidence            57999999999999999999999999999999986532   2334679999999999999999999998643     678


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .|++|||++||+|.+++..
T Consensus        77 lyLVMEY~eGGSL~~lL~s   95 (932)
T PRK13184         77 VYYTMPYIEGYTLKSLLKS   95 (932)
T ss_pred             EEEEEEcCCCCCHHHHHHH
Confidence            8999999999999998864

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.04  E-value=4.8e-10  Score=113.33  Aligned_cols=86  Identities=24%  Similarity=0.323  Sum_probs=73.8

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeec
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      +.||+|+||.||+|++..+|+.||+|+++...   ......+.+|+.++++++||||+++++++     ......|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~-----~~~~~~~lv~e   75 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSF-----QTHDRLCFVME   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEE-----EcCCEEEEEEe
Confidence            46999999999999999999999999997542   23445678999999999999999999884     45788999999


Q ss_pred             ccccCCchhhhhcc
Q 042887          131 YMKCGSSEDWMHQS  144 (628)
Q Consensus       131 ~~~~g~L~~~l~~~  144 (628)
                      |+++|++.+++...
T Consensus        76 ~~~~~~L~~~l~~~   89 (323)
T cd05571          76 YANGGELFFHLSRE   89 (323)
T ss_pred             CCCCCcHHHHHHHc
Confidence            99999999888654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.04  E-value=4.9e-10  Score=113.25  Aligned_cols=86  Identities=26%  Similarity=0.335  Sum_probs=73.4

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeec
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      +.||+|+||.||+|++..+|+.||+|++...   .......+.+|+.+++.++||||+++++++     ......|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~-----~~~~~~~lv~E   75 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAF-----QTHDRLCFVME   75 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEE-----ecCCEEEEEEe
Confidence            4699999999999999999999999999754   223445678899999999999999999884     44778999999


Q ss_pred             ccccCCchhhhhcc
Q 042887          131 YMKCGSSEDWMHQS  144 (628)
Q Consensus       131 ~~~~g~L~~~l~~~  144 (628)
                      |+++|++.+++...
T Consensus        76 ~~~~~~L~~~l~~~   89 (323)
T cd05595          76 YANGGELFFHLSRE   89 (323)
T ss_pred             CCCCCcHHHHHHHc
Confidence            99999998887654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.04  E-value=4.6e-10  Score=111.36  Aligned_cols=90  Identities=21%  Similarity=0.300  Sum_probs=76.3

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .|+..+.||+|+||.||+|.+..+|+.||+|.+....   ......+.+|+.++++++|++|+++.+++     .+.+..
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~-----~~~~~~   75 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAY-----ETKDAL   75 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEE-----ccCCeE
Confidence            3777899999999999999999999999999986532   22334678999999999999999999885     346789


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      ++||||+++|++.+++..
T Consensus        76 ~lv~e~~~~g~L~~~~~~   93 (285)
T cd05631          76 CLVLTIMNGGDLKFHIYN   93 (285)
T ss_pred             EEEEEecCCCcHHHHHHh
Confidence            999999999999887754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.04  E-value=5.2e-10  Score=110.99  Aligned_cols=91  Identities=21%  Similarity=0.299  Sum_probs=76.8

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .|++.+.||+|+||.||++.+..+++.||+|.+....   ......+.+|+.+++.++||||+++++.+     ......
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----~~~~~~   75 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAY-----ETKDAL   75 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeee-----cCCCeE
Confidence            4788899999999999999998899999999986532   22335578899999999999999999884     446789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|++.+++...
T Consensus        76 ~lv~e~~~~~~L~~~~~~~   94 (285)
T cd05605          76 CLVLTLMNGGDLKFHIYNM   94 (285)
T ss_pred             EEEEeccCCCcHHHHHHhc
Confidence            9999999999999887543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.04  E-value=1.9e-11  Score=127.20  Aligned_cols=247  Identities=24%  Similarity=0.276  Sum_probs=155.3

Q ss_pred             cCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHh
Q 042887          280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIAN  359 (628)
Q Consensus       280 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~  359 (628)
                      ..+..++.+++..|.+.. ....+..+++|+.|++.+|.|..+...       +..++                      
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-------l~~~~----------------------  118 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL-------LSSLV----------------------  118 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc-------hhhhh----------------------
Confidence            344555556666666653 222345556666666666666542210       22233                      


Q ss_pred             ccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccC-ccccCCCCCCe
Q 042887          360 LSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTLGNLTLLNR  438 (628)
Q Consensus       360 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  438 (628)
                         +|++|++++|.|+..  ..+..++.|+.|++++|.|...  ..+..++.|+.+++++|.+....+ . ...+.+++.
T Consensus       119 ---~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~  190 (414)
T KOG0531|consen  119 ---NLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEE  190 (414)
T ss_pred             ---cchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHH
Confidence               455555555555533  3456666788899999988743  456668888999999998885444 2 467788888


Q ss_pred             EecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccC--CCCEeeCcCCcCcccCCccccCCCCCCeEE
Q 042887          439 LFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLR--NLAEFDLSENHFSNEIPVTLSACTTLEYLH  516 (628)
Q Consensus       439 L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  516 (628)
                      ++++.|.+...  ..+..+..+    ..+++..|.++...+  +..+.  .|+.+++++|++. ..+..+..+..+..|+
T Consensus       191 l~l~~n~i~~i--~~~~~~~~l----~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~  261 (414)
T KOG0531|consen  191 LDLGGNSIREI--EGLDLLKKL----VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLD  261 (414)
T ss_pred             HhccCCchhcc--cchHHHHHH----HHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccc
Confidence            88888888632  223333333    445788888874322  22222  3788888888887 3335667778888888


Q ss_pred             CcCceeeeecCccccCCCCCCEEECCCCccccc---Cchh-hhcccCCCeEeccCCcCcccCC
Q 042887          517 LQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQ---IPKY-LENLLFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       517 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-~~~l~~L~~L~ls~N~l~~~~p  575 (628)
                      +.+|++...  ..+...+.+..+....|.+...   .... ....+.++.+++..|++....+
T Consensus       262 ~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  262 LSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            888888632  2345567777888888887622   1121 4556778888888888776544

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.04  E-value=2.3e-10  Score=109.07  Aligned_cols=99  Identities=22%  Similarity=0.334  Sum_probs=83.4

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeec--cccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~--~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ....|...+.||+|+||.|+.|.+..+|+.||||.+..  ...-.+++..||+..++.++|+||+.+.++......+...
T Consensus        20 i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~   99 (359)
T KOG0660|consen   20 IPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFN   99 (359)
T ss_pred             ccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccc
Confidence            34566667899999999999999999999999999973  3455678899999999999999999999987654455678


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+|+|+|+ .||++.++...
T Consensus       100 DvYiV~elMe-tDL~~iik~~~  120 (359)
T KOG0660|consen  100 DVYLVFELME-TDLHQIIKSQQ  120 (359)
T ss_pred             eeEEehhHHh-hHHHHHHHcCc
Confidence            8999999995 58888887654

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.04  E-value=3e-10  Score=115.90  Aligned_cols=96  Identities=21%  Similarity=0.403  Sum_probs=78.4

Q ss_pred             HhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceeeecc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCSSID  118 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~  118 (628)
                      +.++|++.+.||+|+||.||+|.+.     .+++.||||+++... ......+.+|+.++.++ +||||+++++++..  
T Consensus         5 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~--   82 (343)
T cd05103           5 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK--   82 (343)
T ss_pred             chhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeec--
Confidence            4568999999999999999999852     457889999997543 23345788999999999 58999999998643  


Q ss_pred             ccccceeeeeecccccCCchhhhhccc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                        .....+++||||++|+|.+++....
T Consensus        83 --~~~~~~lv~ey~~~g~L~~~i~~~~  107 (343)
T cd05103          83 --PGGPLMVIVEFCKFGNLSNYLRSKR  107 (343)
T ss_pred             --CCCceEEEEeccCCCcHHHHHHhcC
Confidence              3457889999999999999997654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.04  E-value=1.1e-10  Score=105.08  Aligned_cols=98  Identities=19%  Similarity=0.251  Sum_probs=86.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|.+.+.+|+|||+.||.++...+++.||+|++......+.+...+|++..++++||||+++++.+....-+..+..|
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence            46799999999999999999999999999999999877766778899999999999999999999987653344567899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++++|...|++.+.+...
T Consensus       100 ll~Pyy~~Gsl~d~i~~~  117 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIERL  117 (302)
T ss_pred             EEeehhccccHHHHHHHH
Confidence            999999999999988543

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.03  E-value=6e-10  Score=111.62  Aligned_cols=93  Identities=25%  Similarity=0.505  Sum_probs=77.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++.... ......+.+|+.+++.++||||+++++++     ......
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~-----~~~~~~   78 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDII-----HTKETL   78 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEE-----ecCCeE
Confidence            468999999999999999999999899999999987543 22345678999999999999999999985     447789


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||+. +++.+++....
T Consensus        79 ~lv~e~~~-~~l~~~~~~~~   97 (303)
T cd07869          79 TLVFEYVH-TDLCQYMDKHP   97 (303)
T ss_pred             EEEEECCC-cCHHHHHHhCC
Confidence            99999996 57777776543

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.03  E-value=5.3e-10  Score=113.50  Aligned_cols=93  Identities=20%  Similarity=0.300  Sum_probs=79.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||++++..+++.||+|++.+..   ......+.+|+.++..++|++|+++++++     .+...
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~-----~~~~~   75 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAF-----QDENN   75 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEE-----ecCCE
Confidence            47899999999999999999999999999999986532   23344578899999999999999999885     44788


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+||||+++|+|.+++.+..
T Consensus        76 ~~lv~ey~~~g~L~~~l~~~~   96 (332)
T cd05623          76 LYLVMDYYVGGDLLTLLSKFE   96 (332)
T ss_pred             EEEEEeccCCCcHHHHHHHhc
Confidence            999999999999999997643

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.03  E-value=4e-10  Score=115.46  Aligned_cols=89  Identities=28%  Similarity=0.333  Sum_probs=76.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|+..+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+++++.++|+||+++++++     ...+..
T Consensus        73 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----~~~~~~  147 (353)
T PLN00034         73 LSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMF-----DHNGEI  147 (353)
T ss_pred             HHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEe-----ccCCeE
Confidence            456888899999999999999999899999999986543 23456789999999999999999999984     457889


Q ss_pred             eeeecccccCCchhh
Q 042887          126 ALIYEYMKCGSSEDW  140 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~  140 (628)
                      |+||||+++|++.+.
T Consensus       148 ~lv~e~~~~~~L~~~  162 (353)
T PLN00034        148 QVLLEFMDGGSLEGT  162 (353)
T ss_pred             EEEEecCCCCccccc
Confidence            999999999998653

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.02  E-value=6.1e-10  Score=110.48  Aligned_cols=95  Identities=29%  Similarity=0.485  Sum_probs=79.6

Q ss_pred             CCCCcCceeecCCceeEEEEEE----CCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~----~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .+|++.+.||+|+||.||+|.+    ..+++.||+|.+........+.+.+|+++++.++||||+++++++..   .+..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---~~~~   80 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGRR   80 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEcc---CCCC
Confidence            4788899999999999999984    35688999999876655556788999999999999999999987643   2345


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..++|+||+++|+|.+++.+..
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~  102 (284)
T cd05081          81 NLRLVMEYLPYGSLRDYLQKHR  102 (284)
T ss_pred             ceEEEEEecCCCCHHHHHHhcC
Confidence            6899999999999999986544

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.02  E-value=2.9e-11  Score=121.35  Aligned_cols=120  Identities=26%  Similarity=0.311  Sum_probs=93.7

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc---chhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      -|+-.+.||.|+||-||.|++..+.+.||||.+.-..+   .....+..|+..|.+++|||+|.+.+++..     ....
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLr-----e~Ta  101 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLR-----EHTA  101 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeec-----cchH
Confidence            45666789999999999999999999999999975433   233568999999999999999999999654     7889


Q ss_pred             eeeecccccCCchhhhhccccccccccCCccccCCcCcccEEEccCCccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLI  175 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  175 (628)
                      |+|||||-| +-.+.+.-..+.+.+.....++.+.+..|.+|+ |.|.|.
T Consensus       102 WLVMEYClG-SAsDlleVhkKplqEvEIAAi~~gaL~gLaYLH-S~~~IH  149 (948)
T KOG0577|consen  102 WLVMEYCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLH-SHNRIH  149 (948)
T ss_pred             HHHHHHHhc-cHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH-HhhHHh
Confidence            999999975 666677666666665555556666666777666 555554

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.02  E-value=2.6e-10  Score=117.51  Aligned_cols=99  Identities=21%  Similarity=0.395  Sum_probs=81.1

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCC-----cEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETG-----TTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVC  114 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~-----~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~  114 (628)
                      .|....++|++.+.||+|+||.||+|++...|     +.||+|+++... ....+.+.+|+.+++.+ +|+|||++++++
T Consensus        32 ~~~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~  111 (374)
T cd05106          32 KWEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGAC  111 (374)
T ss_pred             cccccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEe
Confidence            34556678999999999999999999864433     579999997543 33456788999999999 799999999986


Q ss_pred             eeccccccceeeeeecccccCCchhhhhccc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .     .....++|||||++|+|.+++....
T Consensus       112 ~-----~~~~~~lv~ey~~~g~L~~~l~~~~  137 (374)
T cd05106         112 T-----HGGPVLVITEYCCYGDLLNFLRKKA  137 (374)
T ss_pred             c-----CCCCeEEeHhhccCCcHHHHHHhhh
Confidence            4     4678899999999999999997544

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.02  E-value=6.7e-10  Score=111.72  Aligned_cols=84  Identities=18%  Similarity=0.267  Sum_probs=72.6

Q ss_pred             eecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           56 IGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        56 iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      ||+|+||.||+|++..+++.||+|++...   .......+.+|+.++++++||||+++++.+.     .....|+||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~lv~e~~   75 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQ-----SPEKLYLVLAFI   75 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEe-----cCCeEEEEEcCC
Confidence            69999999999999999999999999753   2334567889999999999999999998853     478899999999


Q ss_pred             ccCCchhhhhcc
Q 042887          133 KCGSSEDWMHQS  144 (628)
Q Consensus       133 ~~g~L~~~l~~~  144 (628)
                      ++|+|.+++...
T Consensus        76 ~~g~L~~~l~~~   87 (312)
T cd05585          76 NGGELFHHLQRE   87 (312)
T ss_pred             CCCcHHHHHHhc
Confidence            999999988654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.01  E-value=3.9e-10  Score=110.75  Aligned_cols=93  Identities=25%  Similarity=0.357  Sum_probs=80.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|.++.........+.+|+.+++.++||||+++++.+.     .....|
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~-----~~~~~~   82 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYL-----RRDKLW   82 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEE-----eCCEEE
Confidence            457888899999999999999999899999999987655445567889999999999999999999854     367889


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||+++++|.+++...
T Consensus        83 lv~e~~~~~~L~~~~~~~  100 (267)
T cd06645          83 ICMEFCGGGSLQDIYHVT  100 (267)
T ss_pred             EEEeccCCCcHHHHHHhc
Confidence            999999999999988643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.01  E-value=3.9e-10  Score=107.74  Aligned_cols=98  Identities=22%  Similarity=0.485  Sum_probs=81.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCC-cccccceeeecc-cccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRN-LIKIITVCSSID-FKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~n-Iv~l~~~~~~~~-~~~~  122 (628)
                      +..|+..+.+|+|+||+||+|+.+.+|+.||+|.+....  ++......||+.++++++|+| ||.+++++.... +...
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~   89 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI   89 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence            456777788999999999999999999999999998764  345667899999999999999 999999976521 2233


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ...++|+||+.. ++..++....
T Consensus        90 ~~l~lvfe~~d~-DL~~ymd~~~  111 (323)
T KOG0594|consen   90 GKLYLVFEFLDR-DLKKYMDSLP  111 (323)
T ss_pred             ceEEEEEEeecc-cHHHHHHhcc
Confidence            589999999974 8999987655

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.01  E-value=6.4e-10  Score=110.42  Aligned_cols=104  Identities=22%  Similarity=0.375  Sum_probs=85.8

Q ss_pred             ccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeee
Q 042887           38 VSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSS  116 (628)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~  116 (628)
                      +.++....+.++|++.+.||+|+||.||+|.+..+++.+|+|....... ....+.+|+.+++++ +||||+++++.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD-IDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc-hHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            4455566678899999999999999999999999999999998764322 335678899999999 69999999998754


Q ss_pred             ccccccceeeeeecccccCCchhhhh
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~  142 (628)
                      .........++||||+++|+|.+++.
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~  112 (286)
T cd06638          87 KDVKNGDQLWLVLELCNGGSVTDLVK  112 (286)
T ss_pred             cccCCCCeEEEEEeecCCCCHHHHHH
Confidence            33445678999999999999998875

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.01  E-value=9e-10  Score=111.54  Aligned_cols=86  Identities=23%  Similarity=0.336  Sum_probs=73.6

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeec
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      +.||+|+||.||+|++..+|+.||+|++...   .......+.+|+.+++.++||||+++++.+     ......++|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~~~~lv~E   75 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSF-----QTKDRLCFVME   75 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEE-----EcCCEEEEEEe
Confidence            4699999999999999999999999999754   233456788999999999999999998884     45788999999


Q ss_pred             ccccCCchhhhhcc
Q 042887          131 YMKCGSSEDWMHQS  144 (628)
Q Consensus       131 ~~~~g~L~~~l~~~  144 (628)
                      |+++|++.+++...
T Consensus        76 y~~~g~L~~~l~~~   89 (328)
T cd05593          76 YVNGGELFFHLSRE   89 (328)
T ss_pred             CCCCCCHHHHHHhc
Confidence            99999998887543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.01  E-value=6.5e-11  Score=119.62  Aligned_cols=102  Identities=28%  Similarity=0.488  Sum_probs=82.1

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECC--CCc--EEEEEEeec-cccchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGE--TGT--TVAVKVMNL-KQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~--~~~--~~avK~~~~-~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .++.....+.||+|-||.||+|.+..  .|+  -||||.-+. +.....+.|.+|+.+|++++|||||+++++|.     
T Consensus       387 ~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~-----  461 (974)
T KOG4257|consen  387 RRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCV-----  461 (974)
T ss_pred             ehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeee-----
Confidence            34445566789999999999999742  233  388888765 34556788999999999999999999999987     


Q ss_pred             ccceeeeeecccccCCchhhhhccccccccccC
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL  153 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~  153 (628)
                       ....|+|||.++.|+|..|+......++.+.+
T Consensus       462 -e~P~WivmEL~~~GELr~yLq~nk~sL~l~tL  493 (974)
T KOG4257|consen  462 -EQPMWIVMELAPLGELREYLQQNKDSLPLRTL  493 (974)
T ss_pred             -ccceeEEEecccchhHHHHHHhccccchHHHH
Confidence             46789999999999999999887776654433

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.00  E-value=9.3e-12  Score=125.64  Aligned_cols=118  Identities=20%  Similarity=0.303  Sum_probs=98.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      +.+.|.++..+|.|+||+||+|..++++-..|.|++...+....+.|.-||+||...+||+||+++++++     .....
T Consensus        30 P~d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy-----~enkL  104 (1187)
T KOG0579|consen   30 PRDHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYY-----FENKL  104 (1187)
T ss_pred             HHHHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHh-----ccCce
Confidence            4556778888999999999999999998889999998877778899999999999999999999999854     36788


Q ss_pred             eeeecccccCCchhhhhccccccccccCCccccCCcCcccEEE
Q 042887          126 ALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMID  168 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  168 (628)
                      ||+.|||.||.+...|..-+..+++.....+|..-+..|.+|+
T Consensus       105 wiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LH  147 (1187)
T KOG0579|consen  105 WILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLH  147 (1187)
T ss_pred             EEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHh
Confidence            9999999999999888777777776666555655555555443

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.00  E-value=8.4e-10  Score=109.64  Aligned_cols=89  Identities=21%  Similarity=0.367  Sum_probs=75.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....  ....+.+.+|+.+++.++||||+++++++     ...+..
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----~~~~~~   75 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAF-----RRRGKL   75 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhE-----ecCCEE
Confidence            36899999999999999999999999999999987542  23456788999999999999999999985     447789


Q ss_pred             eeeecccccCCchhhh
Q 042887          126 ALIYEYMKCGSSEDWM  141 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l  141 (628)
                      |+||||++++.+..+.
T Consensus        76 ~lv~e~~~~~~l~~~~   91 (287)
T cd07848          76 YLVFEYVEKNMLELLE   91 (287)
T ss_pred             EEEEecCCCCHHHHHH
Confidence            9999999987765443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.00  E-value=1.9e-10  Score=84.03  Aligned_cols=60  Identities=40%  Similarity=0.546  Sum_probs=33.9

Q ss_pred             CCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcC
Q 042887          511 TLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHF  570 (628)
Q Consensus       511 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l  570 (628)
                      +|++|++++|+++...+..|.++++|++|++++|+++...++.|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555544445555555555555555555555555555555555555555543

...

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.00  E-value=6.7e-10  Score=123.06  Aligned_cols=99  Identities=19%  Similarity=0.335  Sum_probs=83.5

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      +.....++|++.+.||+|+||.||+|.+..+++.||+|.+...  .......+.+|+.+++.++|||||++++++..   
T Consensus         7 ~ge~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~d---   83 (1021)
T PTZ00266          7 DGESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLN---   83 (1021)
T ss_pred             CCccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEe---
Confidence            3344567899999999999999999999999999999998753  23345678999999999999999999998643   


Q ss_pred             cccceeeeeecccccCCchhhhhc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      .....+|+||||+++|+|.+++..
T Consensus        84 e~~~~lyIVMEY~~gGSL~~lL~k  107 (1021)
T PTZ00266         84 KANQKLYILMEFCDAGDLSRNIQK  107 (1021)
T ss_pred             cCCCEEEEEEeCCCCCcHHHHHHH
Confidence            335678999999999999998865

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.99  E-value=1.5e-10  Score=108.08  Aligned_cols=96  Identities=24%  Similarity=0.342  Sum_probs=83.5

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..+++|...+++|+|.||+|..++.+.+|+.||+|++++.   .+..+..-..|-++|+..+||.+..+...     |++
T Consensus       165 vTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYs-----FQt  239 (516)
T KOG0690|consen  165 VTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYS-----FQT  239 (516)
T ss_pred             eccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhh-----hcc
Confidence            3568899999999999999999999999999999999764   34445566788999999999999988777     788


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .++.++||||+.||+|..++.+..
T Consensus       240 ~drlCFVMeyanGGeLf~HLsrer  263 (516)
T KOG0690|consen  240 QDRLCFVMEYANGGELFFHLSRER  263 (516)
T ss_pred             CceEEEEEEEccCceEeeehhhhh
Confidence            999999999999999998886543

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=98.99  E-value=1.1e-09  Score=109.23  Aligned_cols=92  Identities=26%  Similarity=0.352  Sum_probs=81.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..+|++.+.||+|+||.||+|....+++.||+|.+........+.+.+|+.+++.++||||+++++.+.     ..+..|
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~-----~~~~~~   92 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL-----VGDELW   92 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCEEE
Confidence            468999999999999999999998899999999997655445567889999999999999999999854     467899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +||||++++++.+++.+
T Consensus        93 lv~e~~~~~~L~~~~~~  109 (297)
T cd06656          93 VVMEYLAGGSLTDVVTE  109 (297)
T ss_pred             EeecccCCCCHHHHHHh
Confidence            99999999999998854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=98.99  E-value=1.2e-09  Score=111.47  Aligned_cols=95  Identities=21%  Similarity=0.340  Sum_probs=77.3

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||+|++..+|+.||+|.+...  ......++.+|+.++++++||||+++++++...........|
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            488889999999999999999999999999998643  223345688999999999999999999987543333345689


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +|||||. +++.+++...
T Consensus        81 lv~e~~~-~~L~~~l~~~   97 (338)
T cd07859          81 VVFELME-SDLHQVIKAN   97 (338)
T ss_pred             EEEecCC-CCHHHHHHhc
Confidence            9999996 6888887643

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=98.99  E-value=7.3e-10  Score=110.02  Aligned_cols=92  Identities=21%  Similarity=0.312  Sum_probs=79.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|.+... .......+.+|+.++++++||||+++++.+.     .....|
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~-----~~~~~~   75 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFF-----IEGAVY   75 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhhee-----cCCeEE
Confidence            4688999999999999999999889999999988653 2333467899999999999999999999854     478899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +||||++++++.+++...
T Consensus        76 lv~e~~~~~~l~~~~~~~   93 (286)
T cd06622          76 MCMEYMDAGSLDKLYAGG   93 (286)
T ss_pred             EEEeecCCCCHHHHHHhc
Confidence            999999999999888653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=98.99  E-value=7e-10  Score=110.53  Aligned_cols=95  Identities=24%  Similarity=0.377  Sum_probs=82.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      +.+.|++.+.||+|+||.||+|++..+++.||+|..........+.+.+|+.+++.++||||+++++.+.     .....
T Consensus        10 ~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~   84 (292)
T cd06644          10 PNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFY-----WDGKL   84 (292)
T ss_pred             cchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEE-----eCCeE
Confidence            4467999999999999999999999999999999997765556678899999999999999999999854     36789


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||++++++..++.+..
T Consensus        85 ~lv~e~~~~~~l~~~~~~~~  104 (292)
T cd06644          85 WIMIEFCPGGAVDAIMLELD  104 (292)
T ss_pred             EEEEecCCCCcHHHHHHhhc
Confidence            99999999999988876543

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=98.99  E-value=3.3e-10  Score=110.82  Aligned_cols=93  Identities=28%  Similarity=0.470  Sum_probs=80.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      +..+|++.+.||+|+||.||+|.+.. ++.+|+|.+..........+.+|+.+++.++||||+++++.+.     .....
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~   77 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCS-----VGEPV   77 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecC-CCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEe-----cCCCe
Confidence            45679999999999999999999976 8899999987665545677899999999999999999999854     46788


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      +++|||+++|+|.+++.+.
T Consensus        78 ~lv~e~~~~~~L~~~~~~~   96 (261)
T cd05148          78 YIITELMEKGSLLAFLRSP   96 (261)
T ss_pred             EEEEeecccCCHHHHHhcC
Confidence            9999999999999999754

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=98.98  E-value=7.4e-10  Score=116.73  Aligned_cols=116  Identities=23%  Similarity=0.382  Sum_probs=93.5

Q ss_pred             ccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeee
Q 042887           38 VSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSS  116 (628)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~  116 (628)
                      +.+.....+.+.|++.++||+|.||.||++..+++++.+|+|+....... .+....|..+++.. .|||++.+++++.-
T Consensus         9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~-deEiE~eynil~~~~~hpnv~~fyg~~~k   87 (953)
T KOG0587|consen    9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDE-EEEIELEYNMLKKYSHHPNVATFYGAFIK   87 (953)
T ss_pred             cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccc-cHHHHHHHHHHHhccCCCCcceEEEEEEE
Confidence            44566667788999999999999999999999999999999998776443 35567788888877 49999999999876


Q ss_pred             ccccccceeeeeecccccCCchhhhhcc-ccccccccCC
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMHQS-NDKLEAGNLG  154 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~  154 (628)
                      .+--..+..|+|||||.+|+..+.++.- +..+.+.+..
T Consensus        88 ~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~Ia  126 (953)
T KOG0587|consen   88 KDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIA  126 (953)
T ss_pred             ecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHH
Confidence            5555678999999999999999998644 3445544444

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=98.98  E-value=9.5e-10  Score=111.28  Aligned_cols=89  Identities=22%  Similarity=0.400  Sum_probs=73.0

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHH---hhcCCCCcccccceeeeccccccc
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEAL---SNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l---~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      |++.+.||+|+||.||+|.+..+|+.||+|+++...   ....+.+.+|++++   +.++||||+++++++     ....
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~-----~~~~   75 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACF-----QTED   75 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEE-----EcCC
Confidence            677889999999999999999999999999997542   23345677776654   566799999999984     4478


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..|+||||+++|++..++..
T Consensus        76 ~~~lv~E~~~~~~L~~~~~~   95 (324)
T cd05589          76 HVCFVMEYAAGGDLMMHIHT   95 (324)
T ss_pred             EEEEEEcCCCCCcHHHHhhc
Confidence            89999999999999887753

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.98  E-value=3.3e-10  Score=82.73  Aligned_cols=59  Identities=39%  Similarity=0.616  Sum_probs=34.6

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeeccccc
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENN  221 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  221 (628)
                      +|++|++++|+++...++.|.++++|++|++++|.++.+.+++|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45556666666655555555566666666666666655555555666666666665554

...

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=98.98  E-value=1.3e-09  Score=110.51  Aligned_cols=86  Identities=20%  Similarity=0.231  Sum_probs=72.7

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+++.||+|+++...   ......+.+|+.++..+ +||||+++++++     ......|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~-----~~~~~~~lv~   75 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCF-----QTESRLFFVI   75 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEE-----EcCCEEEEEE
Confidence            46999999999999999999999999997642   23345678899999988 699999999984     4478899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      |||++|+|.+++...
T Consensus        76 e~~~~g~L~~~~~~~   90 (329)
T cd05588          76 EFVSGGDLMFHMQRQ   90 (329)
T ss_pred             eCCCCCCHHHHHHHc
Confidence            999999998887644

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=98.98  E-value=1.4e-09  Score=106.83  Aligned_cols=91  Identities=20%  Similarity=0.363  Sum_probs=78.3

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc------cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ------KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~------~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      +|+..+.||+|+||.||+|....+++.||+|.+....      ....+.+.+|+.++++++|+||+++++.+.     ..
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~   75 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATC-----ED   75 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceec-----cC
Confidence            4788899999999999999999999999999987532      123567899999999999999999999854     46


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...++|+||+++++|.+++.+.
T Consensus        76 ~~~~~v~e~~~~~~L~~~l~~~   97 (268)
T cd06630          76 SHFNLFVEWMAGGSVSHLLSKY   97 (268)
T ss_pred             CeEEEEEeccCCCcHHHHHHHh
Confidence            7889999999999999988643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=98.98  E-value=1.3e-09  Score=110.30  Aligned_cols=86  Identities=26%  Similarity=0.313  Sum_probs=73.1

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeec
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      +.||+|+||.||+|.+..+|+.||+|++....   ......+.+|+++++.++||||+++++++     ......|+|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~-----~~~~~~~lv~E   75 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSF-----QTHDRLCFVME   75 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEE-----EcCCEEEEEEe
Confidence            46999999999999999999999999997542   23445678899999999999999998884     44788999999


Q ss_pred             ccccCCchhhhhcc
Q 042887          131 YMKCGSSEDWMHQS  144 (628)
Q Consensus       131 ~~~~g~L~~~l~~~  144 (628)
                      |+++|++.+++...
T Consensus        76 ~~~~~~L~~~l~~~   89 (325)
T cd05594          76 YANGGELFFHLSRE   89 (325)
T ss_pred             CCCCCcHHHHHHhc
Confidence            99999998887643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.98  E-value=1.9e-10  Score=117.83  Aligned_cols=90  Identities=24%  Similarity=0.437  Sum_probs=75.9

Q ss_pred             CCCCcCceeecCCceeEEEEEECCC-Cc--EEEEEEeeccccc-hhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGET-GT--TVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~-~~--~~avK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ++..+.+.||+|+||+|++|.|..- |+  .||||++...... ....|.+|+.+|.+|+|||+|++|++..      +.
T Consensus       110 e~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl------~q  183 (1039)
T KOG0199|consen  110 EQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVL------DQ  183 (1039)
T ss_pred             HHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeec------cc
Confidence            4455668899999999999999643 33  4899999776543 6788999999999999999999999943      36


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...||||.+++|+|.+.+++
T Consensus       184 p~mMV~ELaplGSLldrLrk  203 (1039)
T KOG0199|consen  184 PAMMVFELAPLGSLLDRLRK  203 (1039)
T ss_pred             hhhHHhhhcccchHHHHHhh
Confidence            78899999999999999987

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=98.97  E-value=1.7e-09  Score=107.86  Aligned_cols=92  Identities=25%  Similarity=0.357  Sum_probs=81.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..+|++.+.||+|+||.||+|++..+++.||+|.+........+.+.+|+.+++.+.||||+++++.+.     .....+
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~-----~~~~~~   93 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL-----VGDELW   93 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEE-----eCCEEE
Confidence            467999999999999999999998899999999997765555677899999999999999999999854     367899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +||||++++++.+++.+
T Consensus        94 lv~e~~~~~~L~~~~~~  110 (296)
T cd06654          94 VVMEYLAGGSLTDVVTE  110 (296)
T ss_pred             EeecccCCCCHHHHHHh
Confidence            99999999999998854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=98.97  E-value=9e-10  Score=109.27  Aligned_cols=93  Identities=22%  Similarity=0.322  Sum_probs=80.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|++.... ....+.+.+|+++++.++||||+++++.+.     .....
T Consensus         4 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~   78 (284)
T cd06620           4 NEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFL-----NENNI   78 (284)
T ss_pred             HHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEe-----cCCEE
Confidence            356888899999999999999998899999999886543 334567899999999999999999999864     36789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|++.+++...
T Consensus        79 ~lv~e~~~~~~L~~~~~~~   97 (284)
T cd06620          79 CMCMEFMDCGSLDRIYKKG   97 (284)
T ss_pred             EEEEecCCCCCHHHHHHhc
Confidence            9999999999999888653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=98.97  E-value=1.3e-09  Score=107.06  Aligned_cols=93  Identities=19%  Similarity=0.316  Sum_probs=79.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++.......||+|+||.||+|.+..+++.||+|.+........+.+.+|+.+++.++|+||+++++++.     .....+
T Consensus         7 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~~~~   81 (268)
T cd06624           7 YDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDS-----ENGFFK   81 (268)
T ss_pred             cccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeec-----cCCEEE
Confidence            444555578999999999999998899999999987665556678999999999999999999999854     367899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +++||+++++|.+++...
T Consensus        82 lv~e~~~~~~L~~~l~~~   99 (268)
T cd06624          82 IFMEQVPGGSLSALLRSK   99 (268)
T ss_pred             EEEecCCCCCHHHHHHHh
Confidence            999999999999998754

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=98.97  E-value=1.4e-09  Score=108.19  Aligned_cols=92  Identities=22%  Similarity=0.325  Sum_probs=79.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+....   ....+.+.+|++++++++||||+++++.+.     ....
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~   75 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQ-----DDSN   75 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEE-----cCCe
Confidence            46889999999999999999999999999999986532   234567889999999999999999999854     4778


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||++++++.+++...
T Consensus        76 ~~~v~e~~~~~~L~~~~~~~   95 (290)
T cd05580          76 LYLVMEYVPGGELFSHLRKS   95 (290)
T ss_pred             EEEEEecCCCCCHHHHHHHc
Confidence            99999999999999998654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.97  E-value=1.2e-09  Score=109.71  Aligned_cols=88  Identities=17%  Similarity=0.198  Sum_probs=69.4

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECC-CCcEEEEEEeecc-----ccchhhhHHHHHHHHhhcCCCCcccccceeee
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGE-TGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIKIITVCSS  116 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~-~~~~~avK~~~~~-----~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~  116 (628)
                      .....++|.+.+.||+|+||+||+|++.. +++.||||.....     .....+.|.+|+++|++++|+|++..+..   
T Consensus        13 ~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---   89 (365)
T PRK09188         13 IPALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---   89 (365)
T ss_pred             cccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---
Confidence            34456789999999999999999999876 6778899987532     12234568999999999999999853322   


Q ss_pred             ccccccceeeeeecccccCCch
Q 042887          117 IDFKGVDFKALIYEYMKCGSSE  138 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~  138 (628)
                           ....|+||||++|++|.
T Consensus        90 -----~~~~~LVmE~~~G~~L~  106 (365)
T PRK09188         90 -----TGKDGLVRGWTEGVPLH  106 (365)
T ss_pred             -----cCCcEEEEEccCCCCHH
Confidence                 23469999999999986

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=98.96  E-value=1.4e-09  Score=106.50  Aligned_cols=94  Identities=27%  Similarity=0.379  Sum_probs=82.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.+|+|+||.||+|.+..+++.+|+|.+........+.+.+|++++++++||||+++++.+.     .....+
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~-----~~~~~~   76 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYL-----RRDKLW   76 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEE-----eCCEEE
Confidence            468999999999999999999998889999999998765555678899999999999999999998854     467899


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++|||++++++.+++....
T Consensus        77 l~~e~~~~~~l~~~~~~~~   95 (262)
T cd06613          77 IVMEYCGGGSLQDIYQVTR   95 (262)
T ss_pred             EEEeCCCCCcHHHHHHhhc
Confidence            9999999999999887653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.96  E-value=6.1e-11  Score=120.87  Aligned_cols=93  Identities=26%  Similarity=0.388  Sum_probs=83.6

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++++|+...++|.|+||.||+|++..+++..|+|+++.....+.....+|+-+++..+|||||.+++.+.     ..+.
T Consensus        12 nP~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsyl-----r~dk   86 (829)
T KOG0576|consen   12 NPQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYL-----RRDK   86 (829)
T ss_pred             CCccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhh-----hhcC
Confidence            45688999999999999999999999999999999999887777788889999999999999999999854     4788


Q ss_pred             eeeeecccccCCchhhhh
Q 042887          125 KALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~  142 (628)
                      .++.||||.+|++.+...
T Consensus        87 lwicMEycgggslQdiy~  104 (829)
T KOG0576|consen   87 LWICMEYCGGGSLQDIYH  104 (829)
T ss_pred             cEEEEEecCCCcccceee
Confidence            999999999999987543

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=98.96  E-value=1.3e-09  Score=105.88  Aligned_cols=87  Identities=26%  Similarity=0.467  Sum_probs=73.9

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      +.||+|+||.||+|.+..+++.||+|.+.... ......+.+|++++++++||||+++++++.     .....++||||+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~lv~e~~   75 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCT-----QKQPIYIVMELV   75 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-----CCCCeEEEEeec
Confidence            46999999999999998899999999876432 334567899999999999999999999864     367789999999


Q ss_pred             ccCCchhhhhccc
Q 042887          133 KCGSSEDWMHQSN  145 (628)
Q Consensus       133 ~~g~L~~~l~~~~  145 (628)
                      +++++.+++....
T Consensus        76 ~~~~L~~~~~~~~   88 (252)
T cd05084          76 QGGDFLTFLRTEG   88 (252)
T ss_pred             cCCcHHHHHHhCC
Confidence            9999999986543

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=98.96  E-value=1.3e-09  Score=106.53  Aligned_cols=91  Identities=24%  Similarity=0.376  Sum_probs=79.5

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      +|++.+.||.|+||.||+|.+..+++.||+|.+....   ....+.+.+|++++++++||||+++++.     +.+....
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~-----~~~~~~~   75 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYS-----FQDEENM   75 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHh-----hcCCCeE
Confidence            4888899999999999999998899999999997542   2345778999999999999999999988     4457889


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|+||+++++|.+++...
T Consensus        76 ~lv~e~~~~~~L~~~l~~~   94 (258)
T cd05578          76 YLVVDLLLGGDLRYHLSQK   94 (258)
T ss_pred             EEEEeCCCCCCHHHHHHhc
Confidence            9999999999999998654

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=98.96  E-value=2.1e-09  Score=105.47  Aligned_cols=94  Identities=23%  Similarity=0.350  Sum_probs=77.9

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .+|++.+.||+|+||.||.|.+..+|+.||+|.+....     ....+.+.+|+.++++++||||+++++.+.+   ...
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~   78 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRD---PME   78 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEecc---CCC
Confidence            57899999999999999999999999999999886421     2234678899999999999999999987542   123


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...+++|||+++++|.+++...
T Consensus        79 ~~~~~v~e~~~~~~L~~~l~~~  100 (265)
T cd06652          79 RTLSIFMEHMPGGSIKDQLKSY  100 (265)
T ss_pred             ceEEEEEEecCCCcHHHHHHHc
Confidence            5788999999999999988643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=98.96  E-value=2.3e-09  Score=105.97  Aligned_cols=88  Identities=24%  Similarity=0.277  Sum_probs=75.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++|++.+.||+|+||.||+|++..+++.||+|.+.... ....+.+.+|+.++++++||||+++++.+..     ....+
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~   75 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFV-----ENRIS   75 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEE-----CCEEE
Confidence            46888899999999999999999999999999986542 3344678899999999999999999998653     67889


Q ss_pred             eeecccccCCchhh
Q 042887          127 LIYEYMKCGSSEDW  140 (628)
Q Consensus       127 lv~e~~~~g~L~~~  140 (628)
                      +||||+++|++..+
T Consensus        76 lv~e~~~~~~l~~~   89 (279)
T cd06619          76 ICTEFMDGGSLDVY   89 (279)
T ss_pred             EEEecCCCCChHHh
Confidence            99999999988654

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=98.95  E-value=1.6e-09  Score=109.55  Aligned_cols=91  Identities=21%  Similarity=0.279  Sum_probs=75.5

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCC-Ccccccceeeeccccccce
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHR-NLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~-nIv~l~~~~~~~~~~~~~~  124 (628)
                      +|++.+.||+|+||.||+|++..+++.||+|++...   .....+.+.+|++++..+.|+ +|+++++++     .....
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~-----~~~~~   75 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----QTMDR   75 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEE-----EcCCE
Confidence            588899999999999999999999999999999754   233456788899999999765 577787774     34678


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+||||+++|+|.+++...
T Consensus        76 ~~lv~E~~~~g~L~~~~~~~   95 (324)
T cd05587          76 LYFVMEYVNGGDLMYHIQQV   95 (324)
T ss_pred             EEEEEcCCCCCcHHHHHHHc
Confidence            99999999999999888644

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.95  E-value=1.1e-09  Score=116.61  Aligned_cols=91  Identities=19%  Similarity=0.236  Sum_probs=78.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCC-CcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGET-GTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~-~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..|.+.+.||+|+||.||+|....+ ++.||+|.+..........+.+|+.+++.++|||||++++.+.     ..+..|
T Consensus        67 ~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~-----~~~~~~  141 (478)
T PTZ00267         67 HMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFK-----SDDKLL  141 (478)
T ss_pred             eeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEE-----ECCEEE
Confidence            3489999999999999999999877 7889999876555445566788999999999999999999854     478899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +||||+++|+|.+++.+
T Consensus       142 lv~E~~~gg~L~~~l~~  158 (478)
T PTZ00267        142 LIMEYGSGGDLNKQIKQ  158 (478)
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            99999999999988764

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=98.95  E-value=2.6e-10  Score=118.97  Aligned_cols=93  Identities=27%  Similarity=0.477  Sum_probs=77.3

Q ss_pred             CcCceeecCCceeEEEEEECCCCc----EEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           51 SASNMIGQGSFGFVYKGKLGETGT----TVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        51 ~~~~~iG~G~~g~V~~~~~~~~~~----~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .-.++||+|+||+||+|.+.-.|+    +||+|++... ......++..|+-+|.+++|||+++++++|..      +..
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~------s~~  772 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCML------STL  772 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhccc------chH
Confidence            345789999999999999865554    4888887554 34456789999999999999999999999873      448


Q ss_pred             eeeecccccCCchhhhhccccccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      .+|++|+++|.|.+|++.+++.+.
T Consensus       773 qlvtq~mP~G~LlDyvr~hr~~ig  796 (1177)
T KOG1025|consen  773 QLVTQLMPLGCLLDYVREHRDNIG  796 (1177)
T ss_pred             HHHHHhcccchHHHHHHHhhcccc
Confidence            899999999999999998876664

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=98.94  E-value=1.1e-09  Score=106.85  Aligned_cols=88  Identities=30%  Similarity=0.554  Sum_probs=71.5

Q ss_pred             cCceeecCCceeEEEEEEC----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           52 ASNMIGQGSFGFVYKGKLG----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        52 ~~~~iG~G~~g~V~~~~~~----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +.+.||.|+||.||+|.+.    ..+..|+||.++... ....+.|.+|++.+++++||||+++++++..     ....+
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~-----~~~~~   77 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIE-----NEPLF   77 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEES-----SSSEE
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccc-----ccccc
Confidence            4578999999999999997    335679999996543 3346789999999999999999999999763     55689


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +|+|||++|+|.+++...
T Consensus        78 lv~e~~~~g~L~~~L~~~   95 (259)
T PF07714_consen   78 LVMEYCPGGSLDDYLKSK   95 (259)
T ss_dssp             EEEE--TTEBHHHHHHHT
T ss_pred             cccccccccccccccccc
Confidence            999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=98.94  E-value=1.5e-09  Score=105.84  Aligned_cols=91  Identities=23%  Similarity=0.450  Sum_probs=75.7

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      ++|++.+.||+|+||.||+|.+. ++..+|+|.+.... ...+.+.+|+.++++++||||+++++++.     .....++
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~-~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~i   76 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWR-AQIKVAIKAINEGA-MSEEDFIEEAKVMMKLSHPKLVQLYGVCT-----QQKPLYI   76 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEec-cCceEEEEecccCC-ccHHHHHHHHHHHHHCCCCCceeEEEEEc-----cCCCEEE
Confidence            45888899999999999999885 45689999876432 23467889999999999999999999854     4677899


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      +|||+++|++.+++....
T Consensus        77 v~e~~~~~~L~~~~~~~~   94 (256)
T cd05114          77 VTEFMENGCLLNYLRQRQ   94 (256)
T ss_pred             EEEcCCCCcHHHHHHhCc
Confidence            999999999999886543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=98.94  E-value=2.2e-09  Score=105.30  Aligned_cols=91  Identities=24%  Similarity=0.369  Sum_probs=79.1

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|.++..   .....+.+.+|++++++++|++|+++++.+.     ..+.
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~-----~~~~   76 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFI-----ENNE   76 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeee-----cCCe
Confidence            5799999999999999999999889999999988643   2334567899999999999999999999854     4678


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .+++|||+++|+|.+++..
T Consensus        77 ~~lv~e~~~~~~L~~~l~~   95 (267)
T cd08224          77 LNIVLELADAGDLSRMIKH   95 (267)
T ss_pred             EEEEEecCCCCCHHHHHHH
Confidence            8999999999999988864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=98.94  E-value=1.7e-09  Score=106.17  Aligned_cols=94  Identities=26%  Similarity=0.452  Sum_probs=78.0

Q ss_pred             CCCCcCceeecCCceeEEEEEECCC---CcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGET---GTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ++|++.+.||+|+||.||+|.+..+   ...||+|.++... ......|.+|+.++++++||||+++++.+.     ...
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~   78 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVT-----KSR   78 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEe-----cCC
Confidence            5688999999999999999998644   4579999986543 334567899999999999999999999854     467


Q ss_pred             eeeeeecccccCCchhhhhcccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ..+++|||+++++|.+++.....
T Consensus        79 ~~~iv~e~~~~~~L~~~~~~~~~  101 (266)
T cd05033          79 PVMIITEYMENGSLDKFLRENDG  101 (266)
T ss_pred             ceEEEEEcCCCCCHHHHHHhccC
Confidence            78999999999999999876443

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=98.94  E-value=1.3e-09  Score=107.09  Aligned_cols=93  Identities=25%  Similarity=0.464  Sum_probs=78.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCc---EEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGT---TVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~---~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .+|++.+.||+|+||.||+|.+..+++   .||+|.+... .....+.|.+|+.+++.++||||+++++.+     ....
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~-----~~~~   78 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVV-----TKSR   78 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEE-----CCCC
Confidence            458888999999999999999876665   5999998754 334457899999999999999999999884     3467


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..++||||+++|++.+++....
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~  100 (269)
T cd05065          79 PVMIITEFMENGALDSFLRQND  100 (269)
T ss_pred             ceEEEEecCCCCcHHHHHhhCC
Confidence            7899999999999999987544

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=98.94  E-value=2e-09  Score=105.62  Aligned_cols=91  Identities=23%  Similarity=0.332  Sum_probs=78.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+++.||+|.+....   ......+.+|+++++.++||||+++++.+.     ..+.
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~   76 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFI-----EDNE   76 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEE-----ECCe
Confidence            57899999999999999999999899999999886432   234457889999999999999999999854     3678


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .++++||+++|++.+++..
T Consensus        77 ~~~v~e~~~~~~L~~~~~~   95 (267)
T cd08228          77 LNIVLELADAGDLSQMIKY   95 (267)
T ss_pred             EEEEEEecCCCcHHHHHHH
Confidence            8999999999999988753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=98.94  E-value=2.4e-09  Score=106.63  Aligned_cols=92  Identities=27%  Similarity=0.382  Sum_probs=80.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|....+++.||+|.+........+.+.+|+.++++++||||+++++.+..     ....|
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-----~~~~~   92 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLV-----GDELW   92 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeee-----CCcEE
Confidence            4689999999999999999999988899999999876554455778999999999999999999998543     67889


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +|+||++++++.+++.+
T Consensus        93 lv~e~~~~~~L~~~~~~  109 (293)
T cd06647          93 VVMEYLAGGSLTDVVTE  109 (293)
T ss_pred             EEEecCCCCcHHHHHhh
Confidence            99999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=3.2e-10  Score=125.99  Aligned_cols=131  Identities=19%  Similarity=0.238  Sum_probs=77.8

Q ss_pred             CcCcccEEEccCCccccccchhhhCCCCCCEEecccCc--CcccccccccCCCCCCEeecccccCcccCCcCccCCCCCC
Q 042887          160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANM--LGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE  237 (628)
Q Consensus       160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~  237 (628)
                      +....+...+-+|.+. .++... ..++|+.|-+..|.  +..+..+.|..++.|++|||++|.=-+.+|..++++.+|+
T Consensus       521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            3445555666566554 222222 23356666666664  4433344466677777777776654446677777777777


Q ss_pred             EEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccccc
Q 042887          238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH  294 (628)
Q Consensus       238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  294 (628)
                      +|++++..+. .+|..+.. +.+|.+|++..+.-....|.....+++|++|.+....
T Consensus       599 yL~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            7777777766 66666654 6666666666665544445555566666666665543

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=98.93  E-value=2.4e-09  Score=106.18  Aligned_cols=90  Identities=21%  Similarity=0.310  Sum_probs=76.0

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .|+..+.||+|+||.||+|.+..+++.||+|.+....   ......+.+|+.++++++|++|+.+++.+.     .....
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~-----~~~~~   75 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYE-----TKDAL   75 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEe-----cCCEE
Confidence            3677789999999999999999999999999986542   222345788999999999999999988854     46789


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      ++||||+++|+|.+++..
T Consensus        76 ~lv~e~~~g~~L~~~l~~   93 (285)
T cd05630          76 CLVLTLMNGGDLKFHIYH   93 (285)
T ss_pred             EEEEEecCCCcHHHHHHH
Confidence            999999999999988854

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=98.93  E-value=2.6e-09  Score=104.09  Aligned_cols=90  Identities=18%  Similarity=0.276  Sum_probs=78.0

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      +|++.+.||+|+||.||++.+..+++.||+|.++.. .....+.+.+|+.+++.++||||+++++.+.     +....|+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~l   75 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFE-----ADGHLYI   75 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEE-----ECCEEEE
Confidence            478889999999999999999999999999998653 2334567889999999999999999999854     4788999


Q ss_pred             eecccccCCchhhhhc
Q 042887          128 IYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~  143 (628)
                      +|||+++|++.+++..
T Consensus        76 v~e~~~~~~l~~~~~~   91 (255)
T cd08219          76 VMEYCDGGDLMQKIKL   91 (255)
T ss_pred             EEeeCCCCcHHHHHHh
Confidence            9999999999988864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=98.93  E-value=1.7e-09  Score=106.27  Aligned_cols=93  Identities=25%  Similarity=0.468  Sum_probs=76.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCC---cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETG---TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~---~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ++|++.+.||+|+||.||+|++..++   ..+|+|.++... ....+.+.+|+.++++++||||+++++.+.     ...
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~   78 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVT-----KSK   78 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEe-----cCC
Confidence            46888999999999999999986444   369999886542 234567899999999999999999999854     467


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..+++|||+++|+|.+++....
T Consensus        79 ~~~lv~e~~~~~~L~~~~~~~~  100 (267)
T cd05066          79 PVMIVTEYMENGSLDAFLRKHD  100 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHhcC
Confidence            8899999999999999987544

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=98.93  E-value=2.4e-09  Score=107.66  Aligned_cols=93  Identities=22%  Similarity=0.455  Sum_probs=77.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|.+.+.||+|+||.||+|++..+++.||+|.++... ......+.+|+.++++++||||+++++++.     ..+..
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~   79 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVH-----TDKSL   79 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEe-----eCCeE
Confidence            467999999999999999999999899999999987543 233456789999999999999999999854     46789


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||+++ ++.+++....
T Consensus        80 ~lv~e~~~~-~l~~~~~~~~   98 (309)
T cd07872          80 TLVFEYLDK-DLKQYMDDCG   98 (309)
T ss_pred             EEEEeCCCC-CHHHHHHhcC
Confidence            999999985 7877776543

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>PHA02988 hypothetical protein; Provisional

Probab=98.93  E-value=2.3e-09  Score=106.20  Aligned_cols=88  Identities=20%  Similarity=0.308  Sum_probs=72.7

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccccc---hhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeec
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG---AAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~---~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      ..||+|++|.||+|.+  +|+.||+|.++.....   ..+.|.+|+.+|++++||||+++++++.+. .+.....++|||
T Consensus        26 ~~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~-~~~~~~~~lv~E  102 (283)
T PHA02988         26 VLIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDI-VDDLPRLSLILE  102 (283)
T ss_pred             eEEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEec-ccCCCceEEEEE
Confidence            5799999999999999  7899999999764322   246788999999999999999999986531 123457899999


Q ss_pred             ccccCCchhhhhcc
Q 042887          131 YMKCGSSEDWMHQS  144 (628)
Q Consensus       131 ~~~~g~L~~~l~~~  144 (628)
                      |+++|+|.+++...
T Consensus       103 y~~~g~L~~~l~~~  116 (283)
T PHA02988        103 YCTRGYLREVLDKE  116 (283)
T ss_pred             eCCCCcHHHHHhhC
Confidence            99999999998754

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=98.93  E-value=2.1e-09  Score=106.33  Aligned_cols=83  Identities=22%  Similarity=0.292  Sum_probs=70.5

Q ss_pred             eecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           56 IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        56 iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      ||+|+||.||+|.+..+|+.||+|.+....   ....+.+..|+++++.++||||+++.+++     ......++||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~-----~~~~~~~lv~e~~   75 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAF-----QTKTDLCLVMTIM   75 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEE-----cCCCeEEEEEeCC
Confidence            699999999999999999999999986542   22345678899999999999999998884     4577899999999


Q ss_pred             ccCCchhhhhc
Q 042887          133 KCGSSEDWMHQ  143 (628)
Q Consensus       133 ~~g~L~~~l~~  143 (628)
                      ++|+|.+++..
T Consensus        76 ~~g~L~~~~~~   86 (280)
T cd05608          76 NGGDLRYHIYN   86 (280)
T ss_pred             CCCCHHHHHHh
Confidence            99999887753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=98.93  E-value=2.5e-09  Score=107.98  Aligned_cols=86  Identities=22%  Similarity=0.305  Sum_probs=71.3

Q ss_pred             ceeecCCceeEEEEEEC---CCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887           54 NMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      +.||+|+||.||+++..   .+|+.||+|++....  ......+.+|++++++++||||+++++++     ......|+|
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~-----~~~~~~~lv   76 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAF-----QTEGKLYLI   76 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEE-----EcCCEEEEE
Confidence            57999999999998863   578999999997643  22345677899999999999999999885     447889999


Q ss_pred             ecccccCCchhhhhcc
Q 042887          129 YEYMKCGSSEDWMHQS  144 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~  144 (628)
                      |||+++|+|.+++.+.
T Consensus        77 ~e~~~~~~L~~~l~~~   92 (318)
T cd05582          77 LDFLRGGDLFTRLSKE   92 (318)
T ss_pred             EcCCCCCcHHHHHHHc
Confidence            9999999999888543

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=98.93  E-value=2.5e-09  Score=107.63  Aligned_cols=86  Identities=22%  Similarity=0.313  Sum_probs=71.4

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+++.||+|+++...   ....+.+..|..++... +||||+++++++.     +.+..|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~-----~~~~~~lv~   75 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQ-----TKENLFFVM   75 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEE-----eCCEEEEEE
Confidence            46999999999999999999999999997642   23345667788888765 8999999998854     477899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|+|.+++...
T Consensus        76 ey~~~g~L~~~l~~~   90 (316)
T cd05619          76 EYLNGGDLMFHIQSC   90 (316)
T ss_pred             eCCCCCcHHHHHHHc
Confidence            999999999988653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=1e-09  Score=122.11  Aligned_cols=207  Identities=17%  Similarity=0.207  Sum_probs=133.2

Q ss_pred             CCCCCCEEecccCcCcccccccccCCCCCCEeeccccc--CcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCC
Q 042887          184 NFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENN--FSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNV  261 (628)
Q Consensus       184 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  261 (628)
                      +....+...+-+|.+. .++.+.. .++|++|-+..|.  +....++.|..++.|++|||++|.=-+.+|..++. +-+|
T Consensus       521 ~~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~L  597 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHL  597 (889)
T ss_pred             chhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhh
Confidence            4467788888888876 3444333 3379999999986  55455556788999999999988765689999985 9999


Q ss_pred             cEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCce
Q 042887          262 NFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEM  341 (628)
Q Consensus       262 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~  341 (628)
                      ++|++++..++ .+|..++++..|.+|++..+.-....+.....+++|++|.+..-....    +......+.++.+|+.
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~----~~~~l~el~~Le~L~~  672 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN----DKLLLKELENLEHLEN  672 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc----chhhHHhhhcccchhh
Confidence            99999999999 789999999999999999887655667777779999999987765211    1123334455555555


Q ss_pred             eecccCCccc-ccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccc
Q 042887          342 LYLNTNKFGG-VFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT  399 (628)
Q Consensus       342 L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  399 (628)
                      +......... ........+....+.+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus       673 ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  673 LSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             heeecchhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence            5543322100 001111111111222222222221 23345566666666666666654

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=98.93  E-value=2.5e-09  Score=106.13  Aligned_cols=90  Identities=20%  Similarity=0.292  Sum_probs=76.0

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      |+..+.||+|+||.||+|.+..+++.||+|.+....   ......+.+|+++++.++|++|+.+.+.+     ...+..+
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~-----~~~~~~~   76 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAY-----ETKDALC   76 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEE-----ecCCEEE
Confidence            667788999999999999999999999999986542   22345578899999999999999998884     3477899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||+++|++.+++...
T Consensus        77 lv~e~~~~~~L~~~~~~~   94 (285)
T cd05632          77 LVLTIMNGGDLKFHIYNM   94 (285)
T ss_pred             EEEEeccCccHHHHHHHh
Confidence            999999999999888643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=98.93  E-value=2.4e-09  Score=108.02  Aligned_cols=86  Identities=28%  Similarity=0.371  Sum_probs=72.3

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+++.||+|++...   .....+.+.+|..++..+ +||||+++++++     ......|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~-----~~~~~~~iv~   75 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCF-----QTPDRLFFVM   75 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEE-----EcCCEEEEEE
Confidence            4699999999999999999999999999753   233456678888888877 699999999984     4578899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|+|.+++.+.
T Consensus        76 Ey~~~g~L~~~i~~~   90 (320)
T cd05590          76 EFVNGGDLMFHIQKS   90 (320)
T ss_pred             cCCCCchHHHHHHHc
Confidence            999999999888654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=98.92  E-value=2.5e-09  Score=108.03  Aligned_cols=91  Identities=21%  Similarity=0.267  Sum_probs=74.6

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccce
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      +|+..+.||+|+||.||+|++..+|+.||+|++....   ....+.+..|..++..+. |++|+++++++     .+...
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~-----~~~~~   75 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCF-----QTVDR   75 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEE-----ecCCE
Confidence            3677899999999999999999999999999997542   234456788999988886 57777888774     44778


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+||||+++|+|.+++...
T Consensus        76 ~~lv~Ey~~~g~L~~~i~~~   95 (323)
T cd05615          76 LYFVMEYVNGGDLMYHIQQV   95 (323)
T ss_pred             EEEEEcCCCCCcHHHHHHHc
Confidence            99999999999999888653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=98.92  E-value=2.7e-09  Score=103.97  Aligned_cols=91  Identities=21%  Similarity=0.262  Sum_probs=79.3

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|+..+.||+|+||.||.++...+++.+++|.+....  ......+.+|++++++++|+||+++++.+.     .....+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~-----~~~~~~   75 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFM-----DDNTLL   75 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEe-----cCCeEE
Confidence            4888999999999999999999999999999986542  344567889999999999999999999954     467899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||+++|++.+++.+.
T Consensus        76 ~~~e~~~~~~L~~~~~~~   93 (256)
T cd08221          76 IEMEYANGGTLYDKIVRQ   93 (256)
T ss_pred             EEEEecCCCcHHHHHHhc
Confidence            999999999999998754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=98.92  E-value=3e-09  Score=105.71  Aligned_cols=93  Identities=19%  Similarity=0.262  Sum_probs=78.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++|+..+.||.|+||.||+|.+..+++.+|+|.+.... .....++.+|+++++.++||||+++++.+.+   ......+
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---~~~~~~~   77 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLD---ESSSSIG   77 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEc---cCCCeEE
Confidence            36788899999999999999998899999999987543 2345678999999999999999999998653   2345789


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +||||+++++|.+++..
T Consensus        78 lv~e~~~~~~L~~~l~~   94 (287)
T cd06621          78 IAMEYCEGGSLDSIYKK   94 (287)
T ss_pred             EEEEecCCCCHHHHHHH
Confidence            99999999999888753

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=98.92  E-value=3.4e-09  Score=103.41  Aligned_cols=91  Identities=26%  Similarity=0.405  Sum_probs=77.8

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      +|+..+.||+|+||.||+|....+++.||+|.+....     ....+.+.+|+.+++.++|+||+++++.+.     ...
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~-----~~~   75 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTER-----EED   75 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEe-----cCC
Confidence            4777899999999999999998889999999986543     224567899999999999999999999854     467


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++++||++++++.+++.+.
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~   96 (258)
T cd06632          76 NLYIFLELVPGGSLAKLLKKY   96 (258)
T ss_pred             eEEEEEEecCCCcHHHHHHhc
Confidence            889999999999999998653

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=98.92  E-value=2.7e-09  Score=107.92  Aligned_cols=87  Identities=22%  Similarity=0.337  Sum_probs=71.8

Q ss_pred             ceeecCCceeEEEEEEC---CCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           54 NMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +.||+|+||.||+++..   .+++.||+|+++...    ......+.+|+.+|+.++||||+++++++.     ..+..|
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~-----~~~~~~   76 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQ-----TGGKLY   76 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEe-----cCCeEE
Confidence            67999999999999864   468899999997532    223456788999999999999999998854     477899


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +||||+++|+|.+++....
T Consensus        77 lv~e~~~~~~L~~~~~~~~   95 (323)
T cd05584          77 LILEYLSGGELFMHLEREG   95 (323)
T ss_pred             EEEeCCCCchHHHHHHHcC
Confidence            9999999999999886543

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=98.92  E-value=3e-09  Score=107.76  Aligned_cols=86  Identities=21%  Similarity=0.243  Sum_probs=71.8

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+++.||+|++....   ......+.+|+.++.++ +||||+++++++.     .....|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~-----~~~~~~lv~   75 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQ-----TESRLFFVI   75 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEE-----eCCEEEEEE
Confidence            46999999999999999999999999997642   23345677888888777 7999999999854     478899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|++..++...
T Consensus        76 E~~~~~~L~~~~~~~   90 (329)
T cd05618          76 EYVNGGDLMFHMQRQ   90 (329)
T ss_pred             eCCCCCCHHHHHHHc
Confidence            999999998887543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=98.92  E-value=1.4e-09  Score=108.07  Aligned_cols=96  Identities=23%  Similarity=0.405  Sum_probs=77.5

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSID  118 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~  118 (628)
                      ...++|++.+.||+|+||.||+|....     .+..||+|.+.... ......+.+|+.+++.++||||+++++.+.   
T Consensus         3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~---   79 (288)
T cd05061           3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVS---   79 (288)
T ss_pred             ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEc---
Confidence            346789999999999999999997642     34579999886443 223346889999999999999999999854   


Q ss_pred             ccccceeeeeecccccCCchhhhhccc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                        .....++||||+++|+|.+++....
T Consensus        80 --~~~~~~lv~e~~~~g~L~~~l~~~~  104 (288)
T cd05061          80 --KGQPTLVVMELMAHGDLKSYLRSLR  104 (288)
T ss_pred             --CCCCcEEEEeCCCCCCHHHHHHHhc
Confidence              3567899999999999999997543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=98.92  E-value=2.9e-09  Score=107.23  Aligned_cols=86  Identities=21%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+++.||+|+++...   ....+.+..|..++... +||||+++++++     ......|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~-----~~~~~~~lv~   75 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTF-----QTKEHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEE-----EcCCEEEEEE
Confidence            46999999999999999999999999997542   23345566777777655 799999999884     4477899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|+|.+++...
T Consensus        76 e~~~gg~L~~~~~~~   90 (316)
T cd05592          76 EYLNGGDLMFHIQSS   90 (316)
T ss_pred             cCCCCCcHHHHHHHc
Confidence            999999999888654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=98.92  E-value=1.7e-09  Score=107.07  Aligned_cols=94  Identities=29%  Similarity=0.524  Sum_probs=79.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccccc-hhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .++|.+.+.||+|+||.||+|.+..     +++.||+|.+...... ..+.+.+|+++++.++||||+++++.+.     
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----   78 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCT-----   78 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEe-----
Confidence            3568888999999999999998743     3578999998765433 4578999999999999999999999854     


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .....+++|||+++|+|.+++...+
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~i~~~~  103 (280)
T cd05049          79 EGDPPIMVFEYMEHGDLNKFLRSHG  103 (280)
T ss_pred             cCCCeEEEEecCCCCCHHHHHHhcC
Confidence            3678999999999999999997654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=98.92  E-value=3.2e-09  Score=103.44  Aligned_cols=91  Identities=21%  Similarity=0.345  Sum_probs=79.1

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||+|.+..+++.||+|.+...  .......+.+|++++++++||||+++++.+.     ..+..+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~   75 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFL-----DKGKLN   75 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeec-----cCCEEE
Confidence            478889999999999999999999999999998653  2345567899999999999999999999854     467899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||++++++.+++...
T Consensus        76 lv~e~~~~~~L~~~l~~~   93 (256)
T cd08529          76 IVMEYAENGDLHKLLKMQ   93 (256)
T ss_pred             EEEEeCCCCcHHHHHHHh
Confidence            999999999999998754

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=98.91  E-value=9.1e-10  Score=105.26  Aligned_cols=91  Identities=27%  Similarity=0.414  Sum_probs=71.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      -.|...+++|.|+||.||+|...++++.||||.+-...+    ---+|+.+|+.++|||||++..++.+..-.+.-...+
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r----~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnl   99 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR----YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNL   99 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC----cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHH
Confidence            346777899999999999999999999999998854332    2248999999999999999988876521112335667


Q ss_pred             eecccccCCchhhhhc
Q 042887          128 IYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~  143 (628)
                      ||||++. +|.+.++.
T Consensus       100 VleymP~-tL~~~~r~  114 (364)
T KOG0658|consen  100 VLEYMPE-TLYRVIRH  114 (364)
T ss_pred             HHHhchH-HHHHHHHH
Confidence            9999995 88888864

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=98.91  E-value=2.9e-09  Score=107.56  Aligned_cols=86  Identities=24%  Similarity=0.310  Sum_probs=72.0

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+++.||+|++....   ....+.+..|.+++..+ +||||+++++++     ......|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~-----~~~~~~~lv~   75 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCF-----QTKDRLFFVM   75 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEE-----EcCCeEEEEE
Confidence            46999999999999999999999999997542   33445677898888876 799999999985     4477899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|++..++...
T Consensus        76 E~~~~~~L~~~l~~~   90 (321)
T cd05591          76 EYVNGGDLMFQIQRS   90 (321)
T ss_pred             eCCCCCcHHHHHHHc
Confidence            999999999888654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.91  E-value=3.9e-09  Score=103.34  Aligned_cols=92  Identities=26%  Similarity=0.433  Sum_probs=78.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ++|++.+.||+|+||.||.|....+++.||+|.+....     ......+.+|+.++++++||||+++++.+     +..
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~-----~~~   76 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCL-----RDD   76 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEE-----ccC
Confidence            46899999999999999999998899999999986532     12345688999999999999999999985     446


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...++++||++++++.+++...
T Consensus        77 ~~~~~v~e~~~~~~l~~~~~~~   98 (263)
T cd06625          77 ETLSIFMEYMPGGSVKDQLKAY   98 (263)
T ss_pred             CeEEEEEEECCCCcHHHHHHHh
Confidence            7999999999999999988653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=98.91  E-value=3.2e-09  Score=106.29  Aligned_cols=93  Identities=22%  Similarity=0.470  Sum_probs=78.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+.... ......+.+|+.+++.++||||+++++++.     .....
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~-----~~~~~   79 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-----TEKSL   79 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEe-----cCCeE
Confidence            467999999999999999999998899999999987543 233456789999999999999999999854     46789


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||++ +++.+++.+..
T Consensus        80 ~lv~e~~~-~~l~~~l~~~~   98 (301)
T cd07873          80 TLVFEYLD-KDLKQYLDDCG   98 (301)
T ss_pred             EEEEeccc-cCHHHHHHhcC
Confidence            99999998 58888876543

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=98.91  E-value=2.9e-09  Score=106.02  Aligned_cols=105  Identities=22%  Similarity=0.324  Sum_probs=85.0

Q ss_pred             ccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeee
Q 042887           38 VSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSS  116 (628)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~  116 (628)
                      +.+.+...+.++|++.+.||+|+||.||+|....+++.+|+|.+..... ....+.+|+.+++++ +|||++++++.+..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD-VDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccccc-HHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            3445555668899999999999999999999999999999999865432 345678899999999 79999999998764


Q ss_pred             ccccccceeeeeecccccCCchhhhhc
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      .+.......++||||+++|++.+++..
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~  117 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKG  117 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHH
Confidence            322234578999999999999988753

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=98.91  E-value=2.5e-09  Score=104.46  Aligned_cols=88  Identities=28%  Similarity=0.550  Sum_probs=75.9

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccc--hhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG--AAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      |++.+.||+|+||.||+|....+++.||+|.+......  ......+|+.++++++||||+++++++..     ....++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~~~   75 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQD-----DNYLYI   75 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEE-----SSEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccc-----cccccc
Confidence            67789999999999999999999999999999876432  22334669999999999999999999543     788899


Q ss_pred             eecccccCCchhhhh
Q 042887          128 IYEYMKCGSSEDWMH  142 (628)
Q Consensus       128 v~e~~~~g~L~~~l~  142 (628)
                      +|||++++++.+++.
T Consensus        76 v~~~~~~~~L~~~l~   90 (260)
T PF00069_consen   76 VMEYCPGGSLQDYLQ   90 (260)
T ss_dssp             EEEEETTEBHHHHHH
T ss_pred             ccccccccccccccc
Confidence            999999999999987

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=98.91  E-value=3.5e-09  Score=104.63  Aligned_cols=91  Identities=27%  Similarity=0.371  Sum_probs=77.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +-|+..+.||+|+||.||+|.+..+++.||+|...... ....+.+.+|+..+++++||||+++++.+.     .....+
T Consensus         4 ~~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~~~~   78 (277)
T cd06641           4 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYL-----KDTKLW   78 (277)
T ss_pred             HhhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEE-----eCCeEE
Confidence            45778889999999999999998889999999886543 234467889999999999999999999854     477899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +||||++++++.+++..
T Consensus        79 lv~e~~~~~~l~~~i~~   95 (277)
T cd06641          79 IIMEYLGGGSALDLLEP   95 (277)
T ss_pred             EEEEeCCCCcHHHHHhc
Confidence            99999999999988853

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.91  E-value=1.5e-09  Score=106.96  Aligned_cols=87  Identities=22%  Similarity=0.385  Sum_probs=70.2

Q ss_pred             eeecCCceeEEEEEECCC------------------------CcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccc
Q 042887           55 MIGQGSFGFVYKGKLGET------------------------GTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKI  110 (628)
Q Consensus        55 ~iG~G~~g~V~~~~~~~~------------------------~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l  110 (628)
                      .||+|+||.||+|....+                        ...||+|.+..........+.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            599999999999985321                        13488888866544455678899999999999999999


Q ss_pred             cceeeeccccccceeeeeecccccCCchhhhhcccc
Q 042887          111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       111 ~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ++++.+     ....++||||+++|++..++.....
T Consensus        82 ~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~~~  112 (274)
T cd05076          82 HGVCVR-----GSENIMVEEFVEHGPLDVCLRKEKG  112 (274)
T ss_pred             EEEEEe-----CCceEEEEecCCCCcHHHHHHhcCC
Confidence            999754     6688999999999999988865443

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=98.90  E-value=1.7e-09  Score=107.89  Aligned_cols=93  Identities=27%  Similarity=0.467  Sum_probs=76.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCC--------------cEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETG--------------TTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKII  111 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~--------------~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~  111 (628)
                      .++|++.+.||+|+||.||+|++..++              ..||+|.++.. .......|.+|++++++++|||+++++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~   83 (295)
T cd05097           4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLL   83 (295)
T ss_pred             hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence            357999999999999999999875432              35899998654 233456789999999999999999999


Q ss_pred             ceeeeccccccceeeeeecccccCCchhhhhcc
Q 042887          112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       112 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      +.+.     .....++||||++++++.+++...
T Consensus        84 ~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~  111 (295)
T cd05097          84 GVCV-----SDDPLCMITEYMENGDLNQFLSQR  111 (295)
T ss_pred             EEEc-----CCCccEEEEecCCCCcHHHHHHhc
Confidence            9854     467889999999999999998653

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=98.90  E-value=2.9e-09  Score=105.45  Aligned_cols=91  Identities=24%  Similarity=0.402  Sum_probs=78.8

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      -|++.+.||+|+||.||+|.+..++..+|+|.+........+.+.+|+++++.++||||+++++.+.     .....++|
T Consensus         6 ~~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~-----~~~~~~~v   80 (282)
T cd06643           6 FWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY-----YENNLWIL   80 (282)
T ss_pred             HHHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEe-----eCCEEEEE
Confidence            3677889999999999999999899999999987655555677899999999999999999999864     36788999


Q ss_pred             ecccccCCchhhhhcc
Q 042887          129 YEYMKCGSSEDWMHQS  144 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~  144 (628)
                      +||+++|++.+++...
T Consensus        81 ~e~~~~~~l~~~~~~~   96 (282)
T cd06643          81 IEFCAGGAVDAVMLEL   96 (282)
T ss_pred             EEecCCCcHHHHHHhc
Confidence            9999999998887653

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=98.90  E-value=3.6e-09  Score=106.15  Aligned_cols=92  Identities=17%  Similarity=0.342  Sum_probs=79.0

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||++.+..+++.||+|.+....   ......+.+|+.+++.++||||+++++.+     .....
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~-----~~~~~   75 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSF-----ETKRH   75 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEE-----ecCCE
Confidence            36888999999999999999999999999999987543   23345788999999999999999999884     34778


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||++++++.+++...
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~   95 (305)
T cd05609          76 LCMVMEYVEGGDCATLLKNI   95 (305)
T ss_pred             EEEEEecCCCCcHHHHHHHc
Confidence            89999999999999998654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=98.90  E-value=3.7e-09  Score=106.66  Aligned_cols=86  Identities=26%  Similarity=0.335  Sum_probs=72.4

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+++.||+|+++...   ......+.+|+.++..+ +||||+++++++     ......|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~-----~~~~~~~lv~   75 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCF-----QTKDRLFFVM   75 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEE-----EcCCEEEEEE
Confidence            46999999999999999999999999997542   23445678899999888 699999999985     4477899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|+|.+++.+.
T Consensus        76 e~~~~~~L~~~~~~~   90 (318)
T cd05570          76 EYVNGGDLMFHIQRS   90 (318)
T ss_pred             cCCCCCCHHHHHHHc
Confidence            999999999888654

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=98.90  E-value=2.9e-09  Score=107.39  Aligned_cols=92  Identities=25%  Similarity=0.462  Sum_probs=76.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcE----EEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTT----VAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~----~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .+|+..+.||+|+||.||+|++..+++.    ||+|.++... ....+.+.+|+.+++.++||||+++++++.      .
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~------~   80 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICL------T   80 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEc------C
Confidence            4699999999999999999998666554    8999986543 334567889999999999999999999864      2


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ...++++||+++|++.+++....
T Consensus        81 ~~~~~v~e~~~~g~l~~~l~~~~  103 (316)
T cd05108          81 STVQLITQLMPFGCLLDYVREHK  103 (316)
T ss_pred             CCceeeeecCCCCCHHHHHHhcc
Confidence            35679999999999999987654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=98.90  E-value=3.4e-09  Score=104.62  Aligned_cols=84  Identities=23%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             eecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           56 IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        56 iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      ||+|+||.||+++...+|+.||+|.+....   ......+..|++++++++||||+++++.+     +.....++||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~-----~~~~~~~lv~e~~   75 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAF-----ESKTHLCLVMSLM   75 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEE-----ecCCeEEEEEecC
Confidence            699999999999999999999999986432   22234566799999999999999998884     4577899999999


Q ss_pred             ccCCchhhhhcc
Q 042887          133 KCGSSEDWMHQS  144 (628)
Q Consensus       133 ~~g~L~~~l~~~  144 (628)
                      ++|++.+++...
T Consensus        76 ~g~~L~~~~~~~   87 (277)
T cd05607          76 NGGDLKYHIYNV   87 (277)
T ss_pred             CCCCHHHHHHhc
Confidence            999998887543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=98.90  E-value=1.8e-09  Score=106.72  Aligned_cols=95  Identities=25%  Similarity=0.418  Sum_probs=77.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      ..++|++.+.||+|+||.||+|.+..     .++.||+|.+.... ......+.+|+.+++.++||||+++++.+.    
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~----   79 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS----   79 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEc----
Confidence            45779999999999999999998642     34679999886432 233456889999999999999999998853    


Q ss_pred             cccceeeeeecccccCCchhhhhccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       .....++||||+++|+|.+++.+..
T Consensus        80 -~~~~~~lv~e~~~~~~L~~~~~~~~  104 (277)
T cd05062          80 -QGQPTLVIMELMTRGDLKSYLRSLR  104 (277)
T ss_pred             -CCCCeEEEEecCCCCCHHHHHHHcC
Confidence             4678899999999999999986544

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=98.90  E-value=3.1e-09  Score=107.65  Aligned_cols=88  Identities=19%  Similarity=0.242  Sum_probs=74.5

Q ss_pred             cCceeecC--CceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           52 ASNMIGQG--SFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        52 ~~~~iG~G--~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      +.++||+|  +|++||++.+..+|+.||+|.++...  ....+.+.+|+++++.++||||+++++++.     .....++
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~-----~~~~~~l   76 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFI-----ADNELWV   76 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEE-----ECCEEEE
Confidence            45789999  67899999999999999999997542  234456778999999999999999999864     3678999


Q ss_pred             eecccccCCchhhhhcc
Q 042887          128 IYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~  144 (628)
                      ||||+++|++.+++...
T Consensus        77 v~e~~~~~~l~~~~~~~   93 (327)
T cd08227          77 VTSFMAYGSAKDLICTH   93 (327)
T ss_pred             EEeccCCCcHHHHHHhh
Confidence            99999999999998653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=98.90  E-value=3.9e-09  Score=104.77  Aligned_cols=91  Identities=29%  Similarity=0.446  Sum_probs=79.0

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||+|.+..+|+.||+|.+....  ....+.+.+|+.++++++||||+++++++.     .....+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~-----~~~~~~   75 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFP-----HGSGFV   75 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEe-----cCCeeE
Confidence            4888899999999999999998899999999987643  344567899999999999999999999854     478899


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +|+||+ ++++.+++....
T Consensus        76 ~v~e~~-~~~L~~~~~~~~   93 (286)
T cd07832          76 LVMEYM-PSDLSEVLRDEE   93 (286)
T ss_pred             EEeccc-CCCHHHHHHhcC
Confidence            999999 999999886544

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=98.90  E-value=1.7e-09  Score=105.98  Aligned_cols=92  Identities=25%  Similarity=0.499  Sum_probs=79.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..+|++.+.||+|+||.||+|.+.++++.||+|.+.... .....+.+|+++++.++||||+++++++.     .....+
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~   78 (263)
T cd05052           5 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCT-----REPPFY   78 (263)
T ss_pred             hHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEc-----CCCCcE
Confidence            456888899999999999999999889999999986543 33567899999999999999999999854     367789


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||++++++.+++...
T Consensus        79 lv~e~~~~~~L~~~~~~~   96 (263)
T cd05052          79 IITEFMTYGNLLDYLREC   96 (263)
T ss_pred             EEEEeCCCCcHHHHHHhC
Confidence            999999999999998653

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=98.89  E-value=4.2e-09  Score=103.86  Aligned_cols=92  Identities=29%  Similarity=0.357  Sum_probs=79.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++|++.+.||.|+||.||+|.+..+++.||+|.+.... ......+.+|+++++.++|+||+++++.+.     +....|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~   75 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFL-----KGSKLW   75 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEE-----ECCeEE
Confidence            36888899999999999999999999999999987543 334567889999999999999999999854     367899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +|+||++++++.+++...
T Consensus        76 ~v~e~~~~~~L~~~~~~~   93 (274)
T cd06609          76 IIMEYCGGGSCLDLLKPG   93 (274)
T ss_pred             EEEEeeCCCcHHHHHhhc
Confidence            999999999999998754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=98.89  E-value=4e-09  Score=104.18  Aligned_cols=91  Identities=27%  Similarity=0.373  Sum_probs=78.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..|+..+.||+|+||.||+|.+..+++.||+|.+.... ......+.+|+.+++++.||||+++++.+.+     ....+
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~   78 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----GTKLW   78 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CCEEE
Confidence            45777889999999999999998889999999987543 3445678999999999999999999998643     67899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +||||+++|++.+++..
T Consensus        79 lv~e~~~~~~L~~~i~~   95 (277)
T cd06640          79 IIMEYLGGGSALDLLRA   95 (277)
T ss_pred             EEEecCCCCcHHHHHhc
Confidence            99999999999998864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=98.89  E-value=3.6e-09  Score=105.51  Aligned_cols=92  Identities=23%  Similarity=0.364  Sum_probs=80.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..+|++.+.||.|+||.||+|.+..+|+.||+|.+........+.+.+|+.+++.++||||+++++.+.     .....|
T Consensus        18 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~~~~   92 (296)
T cd06655          18 KKKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFL-----VGDELF   92 (296)
T ss_pred             cceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEe-----cCceEE
Confidence            356999999999999999999998999999999997655445677889999999999999999999854     467899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +|+||++++++.+++.+
T Consensus        93 lv~e~~~~~~L~~~~~~  109 (296)
T cd06655          93 VVMEYLAGGSLTDVVTE  109 (296)
T ss_pred             EEEEecCCCcHHHHHHh
Confidence            99999999999998854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=98.89  E-value=4.1e-09  Score=106.70  Aligned_cols=86  Identities=26%  Similarity=0.351  Sum_probs=69.8

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHH-HHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECE-ALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~-~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+|+.||+|++....   ......+.+|.. +++.++||||+++++.+     ......|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~-----~~~~~~~lv~   75 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSF-----QTTEKLYFVL   75 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEE-----ecCCEEEEEE
Confidence            46999999999999999999999999997542   233445666665 46778999999999884     4478899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|++.+++...
T Consensus        76 e~~~~~~L~~~l~~~   90 (325)
T cd05604          76 DFVNGGELFFHLQRE   90 (325)
T ss_pred             cCCCCCCHHHHHHHc
Confidence            999999998887643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=98.89  E-value=4.1e-09  Score=106.59  Aligned_cols=86  Identities=29%  Similarity=0.384  Sum_probs=69.8

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHH-HHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECE-ALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~-~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+|+.||+|++....   ......+.+|.. +++.++||||+++++.+     ......|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~-----~~~~~~~lv~   75 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSF-----QTADKLYFVL   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEE-----EeCCEEEEEE
Confidence            46999999999999999999999999997542   223345566655 46788999999999884     4477899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|++.+++...
T Consensus        76 e~~~~g~L~~~l~~~   90 (323)
T cd05575          76 DYVNGGELFFHLQRE   90 (323)
T ss_pred             cCCCCCCHHHHHHhc
Confidence            999999999888653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=98.89  E-value=4e-09  Score=104.98  Aligned_cols=93  Identities=25%  Similarity=0.511  Sum_probs=78.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|....+++.||+|.+.... ......+.+|+++++.++|+||+++++++.     .....
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~   78 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIH-----TKKTL   78 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEe-----cCCeE
Confidence            367999999999999999999998899999999987543 223355778999999999999999999854     47789


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||+.+ ++.+++.+..
T Consensus        79 ~lv~e~~~~-~L~~~~~~~~   97 (291)
T cd07844          79 TLVFEYLDT-DLKQYMDDCG   97 (291)
T ss_pred             EEEEecCCC-CHHHHHHhCC
Confidence            999999985 8988876544

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=98.89  E-value=3.1e-09  Score=105.54  Aligned_cols=91  Identities=29%  Similarity=0.444  Sum_probs=77.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+....  ....+.+.+|+++++.++||||+++++++     ......
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----~~~~~~   75 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVF-----RRKKRL   75 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhc-----ccCCeE
Confidence            46888999999999999999998889999999886532  22345688999999999999999999995     457889


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      |+|+||++++++.++...
T Consensus        76 ~lv~e~~~~~~l~~~~~~   93 (286)
T cd07846          76 YLVFEFVDHTVLDDLEKY   93 (286)
T ss_pred             EEEEecCCccHHHHHHhc
Confidence            999999999888877643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=98.89  E-value=5e-09  Score=108.22  Aligned_cols=94  Identities=19%  Similarity=0.260  Sum_probs=75.2

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||+|.+..+|+.||+|.+...  .....+++.+|+++++.++||||+++++++...+.......|
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            478889999999999999999889999999998653  223456788999999999999999999986542222223789


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +||||+. +++.+++..
T Consensus        81 lv~e~~~-~~l~~~~~~   96 (372)
T cd07853          81 VVTELMQ-SDLHKIIVS   96 (372)
T ss_pred             EEeeccc-cCHHHHHhc
Confidence            9999997 577776643

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.89  E-value=3.2e-09  Score=117.34  Aligned_cols=93  Identities=23%  Similarity=0.338  Sum_probs=79.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|.+.+.||+|+||.||+|++..+++.||+|+++...   ......+.+|+.+++.++||||+++++.+.     ...
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~-----~~~   77 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQ-----SAN   77 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEE-----ECC
Confidence            468999999999999999999999899999999997542   233467889999999999999999998754     467


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+||||+.+++|.+++...
T Consensus        78 ~~~lVmEy~~g~~L~~li~~~   98 (669)
T cd05610          78 NVYLVMEYLIGGDVKSLLHIY   98 (669)
T ss_pred             EEEEEEeCCCCCCHHHHHHhc
Confidence            899999999999999988643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=98.89  E-value=4.2e-09  Score=106.11  Aligned_cols=86  Identities=19%  Similarity=0.286  Sum_probs=71.4

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+|+.||+|.++...   ....+.+..|..++... +||+|+++++++     ...+..|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~-----~~~~~~~lv~   75 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTF-----QTKEHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEE-----EeCCEEEEEE
Confidence            46999999999999999999999999997642   23345667788888765 799999999884     4478999999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|+|.+++...
T Consensus        76 E~~~~g~L~~~i~~~   90 (316)
T cd05620          76 EFLNGGDLMFHIQDK   90 (316)
T ss_pred             CCCCCCcHHHHHHHc
Confidence            999999999888654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=98.89  E-value=4.6e-09  Score=102.34  Aligned_cols=91  Identities=20%  Similarity=0.367  Sum_probs=78.9

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|+..+.||+|+||.||+|....+++.+|+|.+....  ....+.+.+|+++++.++||||+++++.+     ......+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~-----~~~~~~~   75 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENF-----LEDKALM   75 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeE-----ecCCEEE
Confidence            5888899999999999999999899999999987542  33456789999999999999999999874     3477899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +||||++++++.+++.+.
T Consensus        76 lv~e~~~~~~L~~~~~~~   93 (256)
T cd08220          76 IVMEYAPGGTLAEYIQKR   93 (256)
T ss_pred             EEEecCCCCCHHHHHHHh
Confidence            999999999999998654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=98.89  E-value=3.7e-09  Score=104.10  Aligned_cols=91  Identities=24%  Similarity=0.440  Sum_probs=76.4

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc----------chhhhHHHHHHHHhhcCCCCcccccceeeecc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK----------GAAKSFVTECEALSNVRHRNLIKIITVCSSID  118 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~  118 (628)
                      +|...+.||+|+||.||+|....+|+.||+|.+.....          ...+.+.+|+.+++.++|||++++++.+.   
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~---   78 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFET---   78 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEec---
Confidence            47788999999999999999988999999998864211          12346788999999999999999999854   


Q ss_pred             ccccceeeeeecccccCCchhhhhcc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                        .....++||||+++|++.+++...
T Consensus        79 --~~~~~~lv~e~~~~~~L~~~l~~~  102 (272)
T cd06629          79 --TEEYLSIFLEYVPGGSIGSCLRTY  102 (272)
T ss_pred             --cCCceEEEEecCCCCcHHHHHhhc
Confidence              467889999999999999988654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.89  E-value=5.8e-09  Score=102.21  Aligned_cols=94  Identities=24%  Similarity=0.390  Sum_probs=78.4

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-----ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-----~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .+|++.+.||+|+||.||+|.+..+++.||+|.+...     .......+.+|++++++++||||+++++.+.+   ...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~---~~~   78 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRD---PEE   78 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEc---CCC
Confidence            5789999999999999999999999999999987532     12344678899999999999999999998643   224


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...++++||++++++.+++...
T Consensus        79 ~~~~~v~e~~~~~~L~~~~~~~  100 (264)
T cd06653          79 KKLSIFVEYMPGGSIKDQLKAY  100 (264)
T ss_pred             CEEEEEEEeCCCCcHHHHHHHc
Confidence            5788999999999999888643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=98.88  E-value=5e-09  Score=102.14  Aligned_cols=90  Identities=21%  Similarity=0.312  Sum_probs=78.1

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||.+....+|+.||+|.+...  .....+.+.+|+.++++++||||+++++.+     ......+
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~-----~~~~~~~   75 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESF-----EENGNLY   75 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeee-----cCCCeEE
Confidence            488889999999999999999999999999998653  233446789999999999999999999884     4577899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +|+||++++++.+++..
T Consensus        76 lv~e~~~~~~l~~~~~~   92 (256)
T cd08218          76 IVMDYCEGGDLYKKINA   92 (256)
T ss_pred             EEEecCCCCcHHHHHHh
Confidence            99999999999988865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=98.88  E-value=4.6e-09  Score=106.15  Aligned_cols=86  Identities=26%  Similarity=0.366  Sum_probs=69.6

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHH-HHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECE-ALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~-~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+|+.||+|++....   ......+.+|.. +++.++||||+++++.+     ......|+||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~-----~~~~~~~lv~   75 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSF-----QTAEKLYFVL   75 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEE-----EcCCEEEEEE
Confidence            46999999999999999999999999997532   223345666654 57888999999999884     4477899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|++.+++...
T Consensus        76 e~~~~~~L~~~l~~~   90 (321)
T cd05603          76 DYVNGGELFFHLQRE   90 (321)
T ss_pred             cCCCCCCHHHHHHHc
Confidence            999999998877543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=98.88  E-value=5.3e-09  Score=102.65  Aligned_cols=91  Identities=25%  Similarity=0.445  Sum_probs=76.8

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc---------chhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      +|.+.+.||+|+||.||+|.+..+++.||+|.+.....         ...+.+.+|+.++++++||||+++++.+.    
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~----   76 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSL----   76 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEE----
Confidence            47788999999999999999988899999998865321         12356889999999999999999999854    


Q ss_pred             cccceeeeeecccccCCchhhhhcc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                       .....+++|||++++++.+++...
T Consensus        77 -~~~~~~lv~e~~~~~~L~~~l~~~  100 (267)
T cd06628          77 -DADHLNIFLEYVPGGSVAALLNNY  100 (267)
T ss_pred             -eCCccEEEEEecCCCCHHHHHHhc
Confidence             367889999999999999998654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=98.88  E-value=6.9e-09  Score=101.82  Aligned_cols=94  Identities=23%  Similarity=0.389  Sum_probs=78.1

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .+|+..+.||+|+||.||+|.+..+++.||+|.+....     ....+.+.+|+.+++.++||||+++++.+..   ...
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~   78 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRD---RAE   78 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEc---CCC
Confidence            36889999999999999999999999999999986432     1234568899999999999999999987542   234


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...++++||+++++|.+++...
T Consensus        79 ~~~~l~~e~~~~~~L~~~l~~~  100 (266)
T cd06651          79 KTLTIFMEYMPGGSVKDQLKAY  100 (266)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHc
Confidence            6789999999999999988643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=98.88  E-value=4.3e-09  Score=102.62  Aligned_cols=91  Identities=30%  Similarity=0.508  Sum_probs=78.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|..  .|+.||+|.+..... ..+++.+|+.++++++|+||+++++.+.     .....+
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~~   76 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDY--RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVL-----QGNPLY   76 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEe--cCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEc-----CCCCeE
Confidence            45788999999999999999998  478999999876543 4578999999999999999999999854     367889


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +||||++++++.+++....
T Consensus        77 ~v~e~~~~~~L~~~~~~~~   95 (256)
T cd05039          77 IVTEYMAKGSLVDYLRSRG   95 (256)
T ss_pred             EEEEecCCCcHHHHHHhcC
Confidence            9999999999999986543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=98.88  E-value=4.6e-09  Score=106.22  Aligned_cols=91  Identities=20%  Similarity=0.266  Sum_probs=75.0

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccce
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      +|++.+.||+|+||.||+|++..+++.||+|.+....   ....+.+..|..++..+ .|++|+++++++     ...+.
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~-----~~~~~   75 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCF-----QTMDR   75 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEE-----ecCCE
Confidence            4788899999999999999999999999999997542   23345567788888877 488999998884     44778


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+||||+++|+|.+++...
T Consensus        76 ~~lv~E~~~~g~L~~~~~~~   95 (323)
T cd05616          76 LYFVMEYVNGGDLMYQIQQV   95 (323)
T ss_pred             EEEEEcCCCCCCHHHHHHHc
Confidence            99999999999999888643

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=98.88  E-value=3.4e-09  Score=106.12  Aligned_cols=94  Identities=29%  Similarity=0.517  Sum_probs=77.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcE--EEEEEeecc-ccchhhhHHHHHHHHhhc-CCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTT--VAVKVMNLK-QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~--~avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|++.+.||+|+||.||+|.+..++..  +|+|..+.. .....+.+.+|++++.++ +||||+++++++.     ..
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~-----~~   80 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACE-----HR   80 (303)
T ss_pred             hhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEEC-----CC
Confidence            35788899999999999999999777764  577766543 233456788999999999 7999999999854     46


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ...|++|||+++|++.+++....
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~  103 (303)
T cd05088          81 GYLYLAIEYAPHGNLLDFLRKSR  103 (303)
T ss_pred             CCceEEEEeCCCCcHHHHHHhcc
Confidence            78999999999999999997654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=98.88  E-value=5.8e-09  Score=102.13  Aligned_cols=91  Identities=27%  Similarity=0.421  Sum_probs=79.5

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||+|....+++.||+|.++....  ...+.+.+|+.+++.++|+||+++++.+.     .....+
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~-----~~~~~~   75 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEV-----HREKVY   75 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEe-----cCCEEE
Confidence            47888999999999999999988999999999976543  35678999999999999999999999853     467899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +|+||++++++.+++...
T Consensus        76 lv~e~~~~~~L~~~~~~~   93 (264)
T cd06626          76 IFMEYCSGGTLEELLEHG   93 (264)
T ss_pred             EEEecCCCCcHHHHHhhc
Confidence            999999999999988653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=98.87  E-value=2.2e-09  Score=106.04  Aligned_cols=91  Identities=27%  Similarity=0.379  Sum_probs=77.4

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +.|+..+.||+|+||.||+|.+..+++.||+|.+.... ....+.+.+|+.++++++||||+++++.+     ......|
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----~~~~~~~   78 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSY-----LKGTKLW   78 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhccc-----ccCCceE
Confidence            34667788999999999999998889999999987543 33456789999999999999999999985     4477899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +||||++++++.+++..
T Consensus        79 lv~e~~~~~~L~~~~~~   95 (277)
T cd06642          79 IIMEYLGGGSALDLLKP   95 (277)
T ss_pred             EEEEccCCCcHHHHhhc
Confidence            99999999999988753

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=98.87  E-value=3.5e-09  Score=104.44  Aligned_cols=94  Identities=21%  Similarity=0.459  Sum_probs=78.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccccc-hhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .++|+..+.||+|+||.||+|+...     +.+.||+|........ ..+.+.+|++++++++||||+++++.+.     
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----   78 (275)
T cd05046           4 RSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCR-----   78 (275)
T ss_pred             hHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEEC-----
Confidence            3678899999999999999999753     3467999988654433 4567999999999999999999999854     


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .....++||||+++|+|.+++....
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~i~~~~  103 (275)
T cd05046          79 EAEPHYMILEYTDLGDLKQFLRATK  103 (275)
T ss_pred             CCCcceEEEEecCCCcHHHHHHhcc
Confidence            3677899999999999999987554

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.87  E-value=7.7e-10  Score=113.30  Aligned_cols=89  Identities=22%  Similarity=0.381  Sum_probs=79.7

Q ss_pred             eeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccccc
Q 042887           55 MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKC  134 (628)
Q Consensus        55 ~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~  134 (628)
                      ++|+|.||+||.|++..+...+|||-+........+....|+...+.++|.|||++++.+.     .++++-+.||-++|
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~s-----enGf~kIFMEqVPG  656 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVS-----ENGFFKIFMEQVPG  656 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccC-----CCCeEEEEeecCCC
Confidence            5899999999999999998899999998766666778899999999999999999999954     47789999999999


Q ss_pred             CCchhhhhcccccc
Q 042887          135 GSSEDWMHQSNDKL  148 (628)
Q Consensus       135 g~L~~~l~~~~~~~  148 (628)
                      |+|...++...+.+
T Consensus       657 GSLSsLLrskWGPl  670 (1226)
T KOG4279|consen  657 GSLSSLLRSKWGPL  670 (1226)
T ss_pred             CcHHHHHHhccCCC
Confidence            99999998887665

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=98.87  E-value=3.1e-09  Score=105.34  Aligned_cols=92  Identities=20%  Similarity=0.391  Sum_probs=76.3

Q ss_pred             CCCCcCceeecCCceeEEEEEEC----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLG----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .+|++.+.||+|+||.||+|.+.    .+++.||+|.+.... ......+.+|++++++++||||+++++.+.     ..
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~   79 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVT-----QE   79 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEe-----cC
Confidence            56888899999999999999853    356789999987533 334467889999999999999999999843     46


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...|++|||+++|++.+++...
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~  101 (283)
T cd05090          80 QPVCMLFEYLNQGDLHEFLIMR  101 (283)
T ss_pred             CceEEEEEcCCCCcHHHHHHhc
Confidence            7889999999999999998643

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=98.87  E-value=3.3e-09  Score=103.68  Aligned_cols=91  Identities=24%  Similarity=0.461  Sum_probs=76.2

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|++.+.||+|+||.||+|.. ++++.||+|.+..... ..+.+.+|+.++++++|+||+++++...      ....
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~-~~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~~~   75 (260)
T cd05067           4 PRETLKLVKKLGAGQFGEVWMGYY-NGHTKVAIKSLKQGSM-SPEAFLAEANLMKQLQHPRLVRLYAVVT------QEPI   75 (260)
T ss_pred             chHHceeeeeeccCccceEEeeec-CCCceEEEEEecCCCC-cHHHHHHHHHHHHhcCCcCeeeEEEEEc------cCCc
Confidence            456799999999999999999987 4678899999875433 3467899999999999999999987632      4568


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      +++|||+++|++.+++...
T Consensus        76 ~~v~e~~~~~~L~~~~~~~   94 (260)
T cd05067          76 YIITEYMENGSLVDFLKTP   94 (260)
T ss_pred             EEEEEcCCCCCHHHHHHhc
Confidence            9999999999999988643

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=98.87  E-value=3.9e-09  Score=104.90  Aligned_cols=94  Identities=29%  Similarity=0.498  Sum_probs=79.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .++|.+.+.||+|+||.||++...     .++..+|+|.+........+.+.+|++++++++||||+++++.+.     .
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~   78 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCV-----E   78 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEe-----c
Confidence            467889999999999999999852     345669999987655555677999999999999999999999864     3


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ....+++|||+++|++.+++....
T Consensus        79 ~~~~~lv~e~~~~~~L~~~i~~~~  102 (288)
T cd05093          79 GDPLIMVFEYMKHGDLNKFLRAHG  102 (288)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHcC
Confidence            678899999999999999987543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=98.87  E-value=2.5e-09  Score=104.61  Aligned_cols=92  Identities=25%  Similarity=0.450  Sum_probs=77.1

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|++.+.||+|+||.||+|.+. +++.||+|.+..... ..+.+.+|+.+++.++|+||+++++.+.     .....
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~   76 (261)
T cd05072           4 PRESIKLVKKLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVT-----KEEPI   76 (261)
T ss_pred             chHHeEEeeecCCcCCceEEEEEec-CCceEEEEEccCCch-hHHHHHHHHHHHHhCCCCCeeeEEEEEc-----CCCCc
Confidence            3467899999999999999999974 567899998765332 3567899999999999999999998853     46778


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      +++|||+++|++.+++...
T Consensus        77 ~lv~e~~~~~~L~~~l~~~   95 (261)
T cd05072          77 YIITEYMAKGSLLDFLKSD   95 (261)
T ss_pred             EEEEecCCCCcHHHHHHHh
Confidence            9999999999999998653

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=98.87  E-value=3.2e-09  Score=105.54  Aligned_cols=94  Identities=29%  Similarity=0.512  Sum_probs=78.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .++|++.+.||+|+||.||+|.+.     .+++.||+|.+.... ....+.+.+|+.+++++.||||+++++++.     
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~-----   78 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCA-----   78 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEc-----
Confidence            467899999999999999999874     256789999987543 233466889999999999999999999854     


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .....+++|||+++|++.+++....
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~l~~~~  103 (288)
T cd05050          79 VGKPMCLLFEYMAYGDLNEFLRHRS  103 (288)
T ss_pred             CCCccEEEEecCCCCCHHHHHHHcC
Confidence            3667899999999999999997543

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.87  E-value=3.3e-10  Score=110.01  Aligned_cols=100  Identities=21%  Similarity=0.290  Sum_probs=82.9

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-------chhhhHHHHHHHHhhcCCCCccccccee
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-------GAAKSFVTECEALSNVRHRNLIKIITVC  114 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-------~~~~~~~~E~~~l~~l~h~nIv~l~~~~  114 (628)
                      +-....+.|-+...+|+|||+.||+|.+..-.++||||+-.....       ...+..+||.+|.+.++||-||++++++
T Consensus       457 DHptLn~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyf  536 (775)
T KOG1151|consen  457 DHPTLNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYF  536 (775)
T ss_pred             cCcchHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeee
Confidence            334455678888999999999999999988899999998865432       2345678999999999999999999987


Q ss_pred             eeccccccceeeeeecccccCCchhhhhccc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .-    +.+.++-|+|||+|.+|.-|++.+.
T Consensus       537 sl----DtdsFCTVLEYceGNDLDFYLKQhk  563 (775)
T KOG1151|consen  537 SL----DTDSFCTVLEYCEGNDLDFYLKQHK  563 (775)
T ss_pred             ee----ccccceeeeeecCCCchhHHHHhhh
Confidence            52    4677899999999999999987664

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=98.87  E-value=2.1e-09  Score=109.23  Aligned_cols=99  Identities=22%  Similarity=0.376  Sum_probs=79.2

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceee
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCS  115 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~  115 (628)
                      |..+.++|++.+.||+|+||.||+|....     +++.||+|+++... ....+.+.+|+.++.++ +|+||+++++++.
T Consensus         2 ~~~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~   81 (337)
T cd05054           2 WEFPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACT   81 (337)
T ss_pred             cccCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEe
Confidence            34456789999999999999999997533     45789999986532 23345688999999999 7999999999874


Q ss_pred             eccccccceeeeeecccccCCchhhhhccc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .    .....+++|||+++|++.+++....
T Consensus        82 ~----~~~~~~~v~ey~~~~~L~~~i~~~~  107 (337)
T cd05054          82 K----PGGPLMVIVEYCKFGNLSNYLRSKR  107 (337)
T ss_pred             c----CCCCEEEEEecCCCCCHHHHHHhcc
Confidence            3    3567889999999999999986544

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=98.87  E-value=2.8e-09  Score=104.23  Aligned_cols=92  Identities=27%  Similarity=0.469  Sum_probs=77.4

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|++.+.||+|+||.||+|.+. +++.||+|.++.... ..+.+.+|+.++++++||||+++++.+.     .....
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~-~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~   76 (261)
T cd05068           4 DRTSIQLLRKLGAGQFGEVWEGLWN-NTTPVAVKTLKPGTM-DPKDFLAEAQIMKKLRHPKLIQLYAVCT-----LEEPI   76 (261)
T ss_pred             chhheeeEEEecccCCccEEEEEec-CCeEEEEEeeCCCcc-cHHHHHHHHHHHHHCCCCCccceeEEEe-----cCCCe
Confidence            3567899999999999999999974 457899999865432 3567899999999999999999998854     36778


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      +++|||++++++.+++...
T Consensus        77 ~lv~e~~~~~~L~~~~~~~   95 (261)
T cd05068          77 YIVTELMKYGSLLEYLQGG   95 (261)
T ss_pred             eeeeecccCCcHHHHHhcc
Confidence            9999999999999998654

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=98.87  E-value=4.6e-09  Score=103.12  Aligned_cols=91  Identities=23%  Similarity=0.346  Sum_probs=78.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+++.+|+|.+....   ......+.+|+.+++.+.||||+++++.+..     .+.
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~   76 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-----DNE   76 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEe-----CCe
Confidence            46888899999999999999998899999999886532   2344678899999999999999999998543     678


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .+++|||++++++.+++..
T Consensus        77 ~~~v~e~~~~~~L~~~~~~   95 (267)
T cd08229          77 LNIVLELADAGDLSRMIKH   95 (267)
T ss_pred             EEEEEEecCCCCHHHHHHH
Confidence            8999999999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=98.86  E-value=6.9e-09  Score=101.61  Aligned_cols=92  Identities=24%  Similarity=0.361  Sum_probs=80.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++|++.+.||+|+||.||+|++..+++.||+|.+..... .....+.+|+..+.+++|+||+++++.+.     .....+
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~~   75 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFY-----KEGEIS   75 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-----cCCeEE
Confidence            368889999999999999999998999999999876543 44577999999999999999999999854     468899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||+++++|.+++...
T Consensus        76 lv~e~~~~~~L~~~l~~~   93 (264)
T cd06623          76 IVLEYMDGGSLADLLKKV   93 (264)
T ss_pred             EEEEecCCCcHHHHHHHc
Confidence            999999999999998654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=3e-09  Score=105.66  Aligned_cols=91  Identities=24%  Similarity=0.434  Sum_probs=74.9

Q ss_pred             CceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeec
Q 042887           53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      .+++|+|.||.||-|+++++|+.||||++++.+  .....+...|+.||+++.||.||.+.-.     +++.+..+.|||
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M-----~ET~ervFVVME  643 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECM-----FETPERVFVVME  643 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEe-----ecCCceEEEEeh
Confidence            588999999999999999999999999998753  3455788999999999999999998766     678999999999


Q ss_pred             ccccCCchhhh-hccccccc
Q 042887          131 YMKCGSSEDWM-HQSNDKLE  149 (628)
Q Consensus       131 ~~~~g~L~~~l-~~~~~~~~  149 (628)
                      -+.| |+.++| ....++++
T Consensus       644 Kl~G-DMLEMILSsEkgRL~  662 (888)
T KOG4236|consen  644 KLHG-DMLEMILSSEKGRLP  662 (888)
T ss_pred             hhcc-hHHHHHHHhhcccch
Confidence            9875 555554 44444444

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=98.86  E-value=7.8e-09  Score=101.35  Aligned_cols=90  Identities=21%  Similarity=0.476  Sum_probs=75.9

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc------cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ------KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~------~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      +|.+.+.||+|+||.||+|.. .+|+.+|+|.+....      ......+.+|++++++++|+||+++++++.+     .
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~   74 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLT-NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLD-----D   74 (265)
T ss_pred             CccccceEeccCCeEEEEEEE-cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeec-----C
Confidence            478889999999999999987 578899999886432      1223568899999999999999999998653     6


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...++++||+++++|.+++.+.
T Consensus        75 ~~~~lv~e~~~~~~L~~~l~~~   96 (265)
T cd06631          75 NTISIFMEFVPGGSISSILNRF   96 (265)
T ss_pred             CeEEEEEecCCCCcHHHHHHhc
Confidence            8899999999999999998654

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.86  E-value=1.3e-09  Score=106.50  Aligned_cols=88  Identities=27%  Similarity=0.534  Sum_probs=72.5

Q ss_pred             ceeecCCceeEEEEEECCCCcE-------EEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTT-------VAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~-------~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +.||+|+||.||+|.+..++..       +|+|.+........+.+.+|+.+++.++||||+++++.+..     ....+
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-----~~~~~   75 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVC-----GDESI   75 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEe-----CCCcE
Confidence            4699999999999998655443       88888765554556778899999999999999999998653     56789


Q ss_pred             eeecccccCCchhhhhcccc
Q 042887          127 LIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~  146 (628)
                      +||||+++|+|.+++.....
T Consensus        76 lv~e~~~~g~L~~~l~~~~~   95 (258)
T cd05078          76 MVQEYVKFGSLDTYLKKNKN   95 (258)
T ss_pred             EEEecCCCCcHHHHHhcCCC
Confidence            99999999999999976543

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=98.86  E-value=5.8e-09  Score=105.98  Aligned_cols=91  Identities=24%  Similarity=0.318  Sum_probs=75.3

Q ss_pred             CCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcC-CCCcccccceeeecccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFK  120 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~  120 (628)
                      +|++.+.||+|+||.||+++..   .+++.||+|++....    ....+.+.+|+.++..++ ||+|+++++++     .
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~-----~   75 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAF-----Q   75 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEE-----e
Confidence            4888999999999999998864   468899999997532    233456788999999995 99999998874     4


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .....++||||+++|++.+++...
T Consensus        76 ~~~~~~lv~e~~~~g~L~~~l~~~   99 (332)
T cd05614          76 TEAKLHLILDYVSGGEMFTHLYQR   99 (332)
T ss_pred             cCCEEEEEEeCCCCCcHHHHHHHc
Confidence            578899999999999999988654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=98.86  E-value=6.7e-09  Score=104.74  Aligned_cols=92  Identities=24%  Similarity=0.398  Sum_probs=79.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc---chhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|+..+.||+|+||.||+|....+++.||+|.+.....   ...+.+.+|+++++.++||||+++++.+     .....
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~-----~~~~~   75 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASF-----QTETY   75 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeee-----ecCCE
Confidence            368888999999999999999988899999999976432   2456788999999999999999999885     44778


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .+++|||+.+++|.+++...
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~   95 (316)
T cd05574          76 LCLVMDYCPGGELFRLLQRQ   95 (316)
T ss_pred             EEEEEEecCCCCHHHHHHhC
Confidence            99999999999999988653

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=98.86  E-value=5e-09  Score=102.12  Aligned_cols=92  Identities=27%  Similarity=0.391  Sum_probs=80.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|....+++.+|+|.+.....  .+.+.+|++++++++||||+++++.+.     .....|
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~-----~~~~~~   74 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYF-----KNTDLW   74 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeee-----cCCcEE
Confidence            3679999999999999999999988899999999875433  578999999999999999999999854     468899


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +++||++++++.+++....
T Consensus        75 l~~e~~~~~~L~~~l~~~~   93 (256)
T cd06612          75 IVMEYCGAGSVSDIMKITN   93 (256)
T ss_pred             EEEecCCCCcHHHHHHhCc
Confidence            9999999999999986544

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=98.86  E-value=4.5e-09  Score=102.76  Aligned_cols=93  Identities=27%  Similarity=0.493  Sum_probs=78.4

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ...++|.+.+.||+|+||.||+|... +++.||+|.+..... ..+.+.+|+.++++++|+||+++++.+.     ....
T Consensus         3 ~~~~~~~i~~~ig~g~~~~v~~~~~~-~~~~~~vK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~   75 (261)
T cd05034           3 IPRESLKLERKLGAGQFGEVWMGTWN-GTTKVAVKTLKPGTM-SPEAFLQEAQIMKKLRHDKLVQLYAVCS-----EEEP   75 (261)
T ss_pred             cchhheeeeeeeccCcceEEEEEEEc-CCceEEEEEecCCcc-CHHHHHHHHHHHhhCCCCCEeeeeeeee-----cCCc
Confidence            34678999999999999999999985 567899999875432 3467899999999999999999998843     4677


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .+++|||++++++.+++.+.
T Consensus        76 ~~~v~e~~~~~~L~~~i~~~   95 (261)
T cd05034          76 IYIVTEYMSKGSLLDFLKSG   95 (261)
T ss_pred             eEEEEeccCCCCHHHHHhcc
Confidence            89999999999999998654

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=98.86  E-value=3e-09  Score=106.16  Aligned_cols=94  Identities=26%  Similarity=0.459  Sum_probs=76.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECC----------------CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGE----------------TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIK  109 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~----------------~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~  109 (628)
                      .++|++.+.||+|+||.||++.+..                ++..||+|...... ......+.+|+.++++++|+||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence            4579999999999999999986432                34469999987542 334567899999999999999999


Q ss_pred             ccceeeeccccccceeeeeecccccCCchhhhhccc
Q 042887          110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       110 l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +++++.     ..+..+++|||+++|++.+++....
T Consensus        84 ~~~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~  114 (296)
T cd05095          84 LLAVCI-----TSDPLCMITEYMENGDLNQFLSRHE  114 (296)
T ss_pred             EEEEEe-----cCCccEEEEEeCCCCcHHHHHHhcC
Confidence            999854     3677899999999999999987643

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=98.86  E-value=7.6e-09  Score=101.28  Aligned_cols=93  Identities=19%  Similarity=0.373  Sum_probs=78.4

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.+|.|+||.||+|.+..+++.||+|.+...  .....+++.+|+.++++++||||+++++.+..   ......+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---~~~~~~~   77 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIID---RSNQTLY   77 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeec---CCCCEEE
Confidence            488889999999999999999999999999998653  23345678899999999999999999887542   3356789


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||++++++.+++...
T Consensus        78 ~~~e~~~~~~L~~~l~~~   95 (265)
T cd08217          78 IVMEYCEGGDLAQLIQKC   95 (265)
T ss_pred             EEehhccCCCHHHHHHHH
Confidence            999999999999998654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=98.85  E-value=4e-09  Score=102.83  Aligned_cols=91  Identities=22%  Similarity=0.448  Sum_probs=75.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      ++|.+.+.||+|+||.||.|.+.. +..+|+|.+..... ..+.+.+|+.++++++||||+++++++.+     ....++
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~-~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~l   76 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRG-QYDVAIKMIKEGSM-SEDEFIEEAKVMMKLSHEKLVQLYGVCTK-----QRPIYI   76 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecC-CCcEEEEEcCCCcc-cHHHHHHHHHHHhcCCCCCeeeEEEEEcc-----CCCcEE
Confidence            468888999999999999998843 45699998865432 34678999999999999999999998643     567899


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      +|||+++|++.+++....
T Consensus        77 v~e~~~~~~l~~~i~~~~   94 (256)
T cd05113          77 VTEYMSNGCLLNYLREHG   94 (256)
T ss_pred             EEEcCCCCcHHHHHHhcC
Confidence            999999999999987543

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.85  E-value=6.2e-09  Score=103.22  Aligned_cols=93  Identities=27%  Similarity=0.445  Sum_probs=76.5

Q ss_pred             CCCcCceeecCCceeEEEEEE----CCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKL----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~----~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      -|++.+.||+|+||.||+|.+    ..+++.||+|.++... ....+.+.+|+.+++.++||||+++++++.+   ....
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~   81 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE---DGGN   81 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEec---CCCC
Confidence            478889999999999999985    3467889999987543 3345678999999999999999999998653   2246


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++||||+++++|.+++.+.
T Consensus        82 ~~~lv~e~~~g~~L~~~l~~~  102 (284)
T cd05079          82 GIKLIMEFLPSGSLKEYLPRN  102 (284)
T ss_pred             ceEEEEEccCCCCHHHHHHhc
Confidence            789999999999999998654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=98.85  E-value=6.8e-09  Score=103.00  Aligned_cols=91  Identities=26%  Similarity=0.404  Sum_probs=76.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||+|.+....  ....+.+.+|+.+++.++||||+++++.+.     .....
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~-----~~~~~   75 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFR-----RKRKL   75 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEe-----eCCEE
Confidence            46889999999999999999999899999999886542  223456789999999999999999999854     46788


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      ++||||++++.+..++..
T Consensus        76 ~~v~e~~~~~~l~~~~~~   93 (286)
T cd07847          76 HLVFEYCDHTVLNELEKN   93 (286)
T ss_pred             EEEEeccCccHHHHHHhC
Confidence            999999999888877643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=98.85  E-value=3.2e-09  Score=104.83  Aligned_cols=95  Identities=22%  Similarity=0.389  Sum_probs=78.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCC-----cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETG-----TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~-----~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      ..++|++.+.||+|+||.||+|.+...+     +.||+|.+.... ......+.+|+.+++.+.||||+++++++.    
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~----   79 (277)
T cd05032           4 PREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVS----   79 (277)
T ss_pred             chHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEc----
Confidence            4568999999999999999999986433     789999986543 234457889999999999999999999854    


Q ss_pred             cccceeeeeecccccCCchhhhhccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       .....+++|||+++|+|.+++....
T Consensus        80 -~~~~~~~v~e~~~~~~L~~~l~~~~  104 (277)
T cd05032          80 -TGQPTLVVMELMAKGDLKSYLRSRR  104 (277)
T ss_pred             -CCCCcEEEEecCCCCCHHHHHHhcc
Confidence             4678999999999999999986543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=98.85  E-value=7.5e-09  Score=103.42  Aligned_cols=91  Identities=25%  Similarity=0.483  Sum_probs=76.9

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-----chhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-----GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      +|++.+.||+|+||.||+|.+..+|+.||+|.+.....     .....+..|++++++++|+||+++++.+.     +..
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~-----~~~   75 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFG-----HKS   75 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheee-----cCC
Confidence            47888999999999999999988999999999976432     23345778999999999999999999854     367


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..++||||+ +|++.+++....
T Consensus        76 ~~~lv~e~~-~~~L~~~i~~~~   96 (298)
T cd07841          76 NINLVFEFM-ETDLEKVIKDKS   96 (298)
T ss_pred             EEEEEEccc-CCCHHHHHhccC
Confidence            899999999 899999986543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=98.84  E-value=6.3e-09  Score=110.99  Aligned_cols=99  Identities=21%  Similarity=0.278  Sum_probs=79.7

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc---cc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID---FK  120 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~---~~  120 (628)
                      ..++|++.+.||+|+||.||+|++..+|+.||+|++....  ......+.+|+..+..++|+||+++++.+...+   ..
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~  109 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPE  109 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcc
Confidence            3468999999999999999999999999999999987542  334566889999999999999999887654311   11


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .....++||||+++|+|.+++...
T Consensus       110 ~~~~i~lV~Ey~~~gsL~~~l~~~  133 (496)
T PTZ00283        110 NVLMIALVLDYANAGDLRQEIKSR  133 (496)
T ss_pred             cceEEEEEEeCCCCCcHHHHHHHh
Confidence            223578999999999999998653

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=98.84  E-value=7.2e-09  Score=101.05  Aligned_cols=91  Identities=19%  Similarity=0.339  Sum_probs=78.2

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||+|....+|..||+|.+....  ....+.+.+|+.+++.++|+||+++++.+     ......+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~-----~~~~~~~   75 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASF-----QENGRLF   75 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhhee-----ccCCeEE
Confidence            4788899999999999999999999999999986542  23445788999999999999999999985     3477899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +++||++++++.+++.+.
T Consensus        76 lv~e~~~~~~L~~~~~~~   93 (257)
T cd08225          76 IVMEYCDGGDLMKRINRQ   93 (257)
T ss_pred             EEEecCCCCcHHHHHHhc
Confidence            999999999999988653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=98.84  E-value=5.4e-09  Score=102.68  Aligned_cols=93  Identities=25%  Similarity=0.519  Sum_probs=77.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCc---EEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGT---TVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~---~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .+|+..+.||+|+||.||+|....+++   .+|+|.+.... ....+.+.+|+.++++++||||+++.+.+.     ...
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~   79 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVT-----KFK   79 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEc-----cCC
Confidence            467888999999999999999876654   69999886542 334567899999999999999999999854     467


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..++||||+++++|.+++....
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~~  101 (268)
T cd05063          80 PAMIITEYMENGALDKYLRDHD  101 (268)
T ss_pred             CcEEEEEcCCCCCHHHHHHhcC
Confidence            7899999999999999986544

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=98.84  E-value=4.3e-09  Score=103.93  Aligned_cols=94  Identities=22%  Similarity=0.399  Sum_probs=78.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .++|++.+.||+|+||.||+|.+..     ++..||+|...... ......|.+|+.+++.++|+||+++++++.+    
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~----   80 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFE----   80 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc----
Confidence            4678999999999999999999976     67889999886443 3334568999999999999999999998543    


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       ....+++|||+++|+|.+++....
T Consensus        81 -~~~~~lv~e~~~g~~L~~~i~~~~  104 (277)
T cd05036          81 -RLPRFILLELMAGGDLKSFLRENR  104 (277)
T ss_pred             -CCCcEEEEecCCCCCHHHHHHHhC
Confidence             567799999999999999987654

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=98.84  E-value=1.2e-08  Score=101.58  Aligned_cols=95  Identities=21%  Similarity=0.430  Sum_probs=73.7

Q ss_pred             CCCCcCceeecCCceeEEEEEECC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhhc---CCCCcccccceeeeccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGE-TGTTVAVKVMNLKQ--KGAAKSFVTECEALSNV---RHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~-~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l---~h~nIv~l~~~~~~~~~~~  121 (628)
                      ++|++.+.||+|+||.||+|++.. +++.||+|.++...  ......+.+|+.+++.+   +||||+++++++.......
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            368999999999999999999854 46889999986542  22334567888877766   6999999999876433345


Q ss_pred             cceeeeeecccccCCchhhhhc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ....++||||+. +++.+++..
T Consensus        81 ~~~~~lv~e~~~-~~l~~~~~~  101 (290)
T cd07862          81 ETKLTLVFEHVD-QDLTTYLDK  101 (290)
T ss_pred             CCcEEEEEccCC-CCHHHHHHh
Confidence            667899999997 588888754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=98.84  E-value=7.5e-09  Score=104.81  Aligned_cols=86  Identities=20%  Similarity=0.239  Sum_probs=72.3

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|+...+++.||+|+++...   ....+.+.+|+.++.++ .||+|+++++++     ......|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~-----~~~~~~~lv~   75 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCF-----QTTSRLFLVI   75 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEE-----EeCCEEEEEE
Confidence            46999999999999999999999999997642   23445688999999888 599999999984     4477899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|+|.+++...
T Consensus        76 e~~~~~~L~~~~~~~   90 (327)
T cd05617          76 EYVNGGDLMFHMQRQ   90 (327)
T ss_pred             eCCCCCcHHHHHHHc
Confidence            999999998887543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.84  E-value=3.4e-09  Score=106.68  Aligned_cols=94  Identities=18%  Similarity=0.276  Sum_probs=79.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc----cc----hhhhHHHHHHHHhhcC---CCCcccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ----KG----AAKSFVTECEALSNVR---HRNLIKIITVCS  115 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~----~~~~~~~E~~~l~~l~---h~nIv~l~~~~~  115 (628)
                      ..+|...+.+|+|+||+|+.|.+++....|.+|.+.+.+    .|    ....+..|+.||..+.   |+||++++++  
T Consensus       560 ~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdf--  637 (772)
T KOG1152|consen  560 FSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDF--  637 (772)
T ss_pred             cccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhe--
Confidence            456899999999999999999999888889999997642    22    2345788999999997   9999999999  


Q ss_pred             eccccccceeeeeecc-cccCCchhhhhccc
Q 042887          116 SIDFKGVDFKALIYEY-MKCGSSEDWMHQSN  145 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~-~~~g~L~~~l~~~~  145 (628)
                         |++.+++|++||- -++-+|+++|..+.
T Consensus       638 ---FEddd~yyl~te~hg~gIDLFd~IE~kp  665 (772)
T KOG1152|consen  638 ---FEDDDYYYLETEVHGEGIDLFDFIEFKP  665 (772)
T ss_pred             ---eecCCeeEEEecCCCCCcchhhhhhccC
Confidence               7789999999998 46678999987654

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=98.84  E-value=3.4e-09  Score=103.73  Aligned_cols=91  Identities=27%  Similarity=0.485  Sum_probs=75.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..+.|++.+.||+|+||.||+|.+..+ ..||+|.++.... ..+.+.+|+++++.++||||+++++.+.      ....
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~-~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~------~~~~   75 (262)
T cd05071           4 PRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS------EEPI   75 (262)
T ss_pred             ChHHeeEeeecCCCCCCcEEEEEecCC-ceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEEC------CCCc
Confidence            346799999999999999999998655 5699999875332 3457899999999999999999988632      3557


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|++.+++.+.
T Consensus        76 ~lv~e~~~~~~L~~~~~~~   94 (262)
T cd05071          76 YIVTEYMSKGSLLDFLKGE   94 (262)
T ss_pred             EEEEEcCCCCcHHHHHhhc
Confidence            8999999999999999753

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=98.84  E-value=6e-09  Score=104.01  Aligned_cols=94  Identities=24%  Similarity=0.403  Sum_probs=78.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCC----------------cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETG----------------TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIK  109 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~----------------~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~  109 (628)
                      +++|++.+.||+|+||.||+|.....+                ..||+|.+.... ....+.+.+|++++++++||||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            568999999999999999999876543                458999987543 334567899999999999999999


Q ss_pred             ccceeeeccccccceeeeeecccccCCchhhhhccc
Q 042887          110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       110 l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +++++.     .....+++|||++++++.+++.+..
T Consensus        84 ~~~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~  114 (296)
T cd05051          84 LLGVCT-----VDPPLCMIMEYMENGDLNQFLQKHV  114 (296)
T ss_pred             EEEEEe-----cCCCcEEEEecCCCCCHHHHHHhcc
Confidence            999854     3578899999999999999987544

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.84  E-value=8.6e-09  Score=102.15  Aligned_cols=95  Identities=31%  Similarity=0.479  Sum_probs=78.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECC----CCcEEEEEEeeccccc-hhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGE----TGTTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~----~~~~~avK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      +.|++.+.||+|+||.||+|.+..    +++.||+|.+...... ..+.|.+|+++++.++||||+++++++..   ...
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~---~~~   80 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEK---PGG   80 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeec---CCC
Confidence            457788999999999999999743    4788999998765432 45789999999999999999999987543   235


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ...+++|||++++++.+++....
T Consensus        81 ~~~~lv~e~~~~~~l~~~l~~~~  103 (284)
T cd05038          81 RSLRLIMEYLPSGSLRDYLQRHR  103 (284)
T ss_pred             CceEEEEecCCCCCHHHHHHhCc
Confidence            67899999999999999987554

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>PHA03212 serine/threonine kinase US3; Provisional

Probab=98.84  E-value=5.9e-09  Score=107.93  Aligned_cols=86  Identities=20%  Similarity=0.241  Sum_probs=73.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..+|++.+.||+|+||.||+|.+..+++.||+|...      ...+.+|+.++++++|||||++++++.     .....+
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~-----~~~~~~  159 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFT-----YNKFTC  159 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEE-----ECCeeE
Confidence            367999999999999999999999999999999643      245679999999999999999999854     467889


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +|+|++. +++.+++...
T Consensus       160 lv~e~~~-~~L~~~l~~~  176 (391)
T PHA03212        160 LILPRYK-TDLYCYLAAK  176 (391)
T ss_pred             EEEecCC-CCHHHHHHhc
Confidence            9999986 6788777543

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=98.84  E-value=8.9e-09  Score=101.36  Aligned_cols=98  Identities=26%  Similarity=0.405  Sum_probs=80.2

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeecccc-ccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFK-GVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~-~~~  123 (628)
                      +.+.|++.+.||+|+||.||+|....+++.||+|.+..... ....+.+|+.++.++ +||||+++++.+...... ...
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD   82 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCc-cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCc
Confidence            45678888999999999999999999999999999875432 345688999999998 699999999987642111 135


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|++|||+++|++.+++...
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~  103 (272)
T cd06637          83 QLWLVMEFCGAGSVTDLIKNT  103 (272)
T ss_pred             EEEEEEEcCCCCcHHHHHHhc
Confidence            689999999999999988753

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=98.83  E-value=6.5e-09  Score=101.33  Aligned_cols=91  Identities=23%  Similarity=0.446  Sum_probs=75.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      .+|++.+.||+|+||.||+|.+. ++..+|+|.+..... ....+.+|+++++.++||||+++++.+.     .....++
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~-~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~~l   76 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWR-GKIDVAIKMIREGAM-SEDDFIEEAKVMMKLSHPNLVQLYGVCT-----KQRPIFI   76 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEec-CCccEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEEEc-----CCCceEE
Confidence            35788899999999999999985 567899998864322 3356889999999999999999998853     4678899


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      ||||++++++.+++....
T Consensus        77 v~e~~~~~~L~~~l~~~~   94 (256)
T cd05059          77 VTEYMANGCLLNYLRERK   94 (256)
T ss_pred             EEecCCCCCHHHHHHhcc
Confidence            999999999999987544

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=98.83  E-value=5.2e-09  Score=103.72  Aligned_cols=93  Identities=26%  Similarity=0.556  Sum_probs=77.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCC-----cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETG-----TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~-----~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ++|++.+.||+|+||.||+|.....+     +.||+|.+.... ......+.+|+.++++++||||+++++++.     .
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~-----~   79 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCT-----K   79 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEc-----C
Confidence            46888999999999999999976544     679999886543 234467899999999999999999999854     3


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ....+++|||+++|++.+++....
T Consensus        80 ~~~~~~~~e~~~~~~L~~~l~~~~  103 (283)
T cd05048          80 EQPTCMLFEYLAHGDLHEFLVRNS  103 (283)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcC
Confidence            677899999999999999997643

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=98.83  E-value=7.3e-09  Score=101.53  Aligned_cols=92  Identities=21%  Similarity=0.283  Sum_probs=79.7

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++|+..+.||+|+||.||+|.+..+++.+|+|.+.... ....+++.+|++++++++||||+++++.+.     .....+
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~-----~~~~~~   75 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFY-----NNGDIS   75 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeee-----cCCEEE
Confidence            36788899999999999999999899999999987653 344567899999999999999999999854     368899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +++||+++++|.+++...
T Consensus        76 lv~e~~~~~~L~~~~~~~   93 (265)
T cd06605          76 ICMEYMDGGSLDKILKEV   93 (265)
T ss_pred             EEEEecCCCcHHHHHHHc
Confidence            999999999999998754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=98.83  E-value=4.4e-09  Score=104.83  Aligned_cols=98  Identities=23%  Similarity=0.436  Sum_probs=79.8

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCC-----cEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceee
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETG-----TTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCS  115 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~-----~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~  115 (628)
                      +....++|++.+.||+|+||.||+|.+...+     ..+|+|.+.... ......+.+|+++++++ +|+||+++++++.
T Consensus         7 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   86 (293)
T cd05053           7 WELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCT   86 (293)
T ss_pred             cccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEc
Confidence            4445678999999999999999999986433     679999987532 23446688999999999 7999999999854


Q ss_pred             eccccccceeeeeecccccCCchhhhhccc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                           ..+..+++|||+++|++.+++....
T Consensus        87 -----~~~~~~li~e~~~~~~L~~~l~~~~  111 (293)
T cd05053          87 -----QEGPLYVVVEYAAHGNLRDFLRARR  111 (293)
T ss_pred             -----CCCCeEEEEEeCCCCcHHHHHHhcC
Confidence                 4678899999999999999987543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=98.82  E-value=9.9e-09  Score=103.90  Aligned_cols=87  Identities=26%  Similarity=0.363  Sum_probs=69.3

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHH-HHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECE-ALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~-~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|++..+++.||+|++....   ......+.+|.. +++.++||||+++++++     ...+..|+||
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~-----~~~~~~~lv~   75 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSF-----QTADKLYFVL   75 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEE-----EcCCeEEEEE
Confidence            46999999999999999999999999997532   222334555554 46778999999999884     4478899999


Q ss_pred             cccccCCchhhhhccc
Q 042887          130 EYMKCGSSEDWMHQSN  145 (628)
Q Consensus       130 e~~~~g~L~~~l~~~~  145 (628)
                      ||+++|++.+++....
T Consensus        76 e~~~~~~L~~~~~~~~   91 (325)
T cd05602          76 DYINGGELFYHLQRER   91 (325)
T ss_pred             eCCCCCcHHHHHHhcC
Confidence            9999999998886543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.82  E-value=1.4e-10  Score=119.23  Aligned_cols=180  Identities=27%  Similarity=0.294  Sum_probs=118.4

Q ss_pred             CcCCCCCCCCCeEecccCccccccCccccCC-CCCCeEecCCcccc----------cccCCcccCCcchhcccceEEcCC
Q 042887          403 PHAIGELKNLQGLALVRNSLRGTIPDTLGNL-TLLNRLFLGFNNLQ----------GNVPSSLGNCQNLMTLSRLLDLSG  471 (628)
Q Consensus       403 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~l~~~L~Ls~  471 (628)
                      |-.+..+.+|++|.+.++.+...  ..+..+ .+|++| +..|.++          +.+-..+.+ ..|    ...+.++
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~W-n~L----~~a~fsy  173 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVW-NKL----ATASFSY  173 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhh-hhH----hhhhcch
Confidence            44567788999999999888731  111111 122222 1122221          011111111 123    4567888


Q ss_pred             CcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCc
Q 042887          472 NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIP  551 (628)
Q Consensus       472 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  551 (628)
                      |++. .+..++.-++.|+.|||++|+++..  +.+..++.|+.|||++|.+....--...+.. |+.|.+++|.++.  -
T Consensus       174 N~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L  247 (1096)
T KOG1859|consen  174 NRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--L  247 (1096)
T ss_pred             hhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--h
Confidence            8887 5666777788899999999998743  3778888999999999998833333334444 8899999998873  3


Q ss_pred             hhhhcccCCCeEeccCCcCccc--CCCCCCCCCCCcccccCCCCCcc
Q 042887          552 KYLENLLFLAYLNLSYNHFEGE--VPRKGVFGNRTGIHLIGNERLCG  596 (628)
Q Consensus       552 ~~~~~l~~L~~L~ls~N~l~~~--~p~~~~~~~l~~~~~~~n~~~c~  596 (628)
                      ..+.+|.+|+.||+++|-|.+-  +...+.+..+..+++.|||.-|.
T Consensus       248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            4578888899999999988763  33345566778888999987774

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=98.82  E-value=5.8e-09  Score=104.41  Aligned_cols=96  Identities=22%  Similarity=0.407  Sum_probs=78.1

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEE-----CCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceeee
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCSS  116 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~-----~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~  116 (628)
                      ....++|++.+.||+|+||.||+|.+     ..++..||+|+++... ....+.+.+|+.+++++ +||||+++++.+..
T Consensus        31 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  110 (302)
T cd05055          31 EFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTI  110 (302)
T ss_pred             cccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEec
Confidence            34456799999999999999999975     2345679999987543 33456789999999999 79999999998643


Q ss_pred             ccccccceeeeeecccccCCchhhhhcc
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                           ....+++|||+++|+|.+++...
T Consensus       111 -----~~~~~lv~e~~~~~~L~~~i~~~  133 (302)
T cd05055         111 -----GGPILVITEYCCYGDLLNFLRRK  133 (302)
T ss_pred             -----CCceEEEEEcCCCCcHHHHHHhC
Confidence                 66789999999999999998653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=98.82  E-value=9.4e-09  Score=102.33  Aligned_cols=92  Identities=25%  Similarity=0.479  Sum_probs=76.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..+|.+.+.||+|+||.||+|.+..+|+.||+|.+.... ......+.+|+.+++.++|+||+++++++.     .....
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~-----~~~~~   78 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIH-----TKETL   78 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEe-----cCCeE
Confidence            467999999999999999999998899999999986543 233346789999999999999999999854     46788


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+. +++.+++...
T Consensus        79 ~lv~e~~~-~~l~~~~~~~   96 (291)
T cd07870          79 TFVFEYMH-TDLAQYMIQH   96 (291)
T ss_pred             EEEEeccc-CCHHHHHHhC
Confidence            99999996 6776666543

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=98.82  E-value=9.8e-09  Score=101.68  Aligned_cols=105  Identities=25%  Similarity=0.393  Sum_probs=83.7

Q ss_pred             cHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeec
Q 042887           39 SYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSI  117 (628)
Q Consensus        39 ~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~  117 (628)
                      +..+...+.+.|++.+.+|+|+||.||+|++..+++.+|+|....... ....+.+|+.+++++ +||||+++++.+...
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTED-EEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChH-HHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            344445567889999999999999999999999999999999865432 335688899999998 699999999886431


Q ss_pred             c-ccccceeeeeecccccCCchhhhhcc
Q 042887          118 D-FKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       118 ~-~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      . .......+++|||+++|++.+++...
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~  113 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNT  113 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHc
Confidence            1 12356789999999999999988653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=98.82  E-value=1.1e-08  Score=100.38  Aligned_cols=92  Identities=26%  Similarity=0.359  Sum_probs=79.4

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++|++.+.||.|+||.||+|....++..+|+|++.... ......+.+|+.+++.++|+||+++++.+.     .....+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~~   75 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFV-----VGDELW   75 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEe-----eCCEEE
Confidence            47899999999999999999998889999999986543 234567899999999999999999998754     467889


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||+++++++.+++...
T Consensus        76 iv~e~~~~~~l~~~~~~~   93 (267)
T cd06610          76 LVMPYLSGGSLLDIMKSS   93 (267)
T ss_pred             EEEeccCCCcHHHHHHHh
Confidence            999999999999998653

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=98.82  E-value=7.1e-09  Score=101.95  Aligned_cols=93  Identities=22%  Similarity=0.365  Sum_probs=75.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCC---CcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGET---GTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|.+.+.||+|+||.||+|.+...   ...||+|...... ....+.+.+|+.++++++||||+++++.+.      .
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~------~   78 (270)
T cd05056           5 REDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVIT------E   78 (270)
T ss_pred             hhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEc------C
Confidence            34688889999999999999997543   3468999886543 345568999999999999999999998754      3


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ...++||||+++|++.+++....
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~~  101 (270)
T cd05056          79 NPVWIVMELAPLGELRSYLQVNK  101 (270)
T ss_pred             CCcEEEEEcCCCCcHHHHHHhCC
Confidence            45689999999999999997544

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=98.82  E-value=9.9e-09  Score=101.76  Aligned_cols=91  Identities=26%  Similarity=0.544  Sum_probs=76.7

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      +|+..+.||+|+||.||+|++..+|+.||+|.++... ....+.+.+|+.++++++||||+++++.+.+     ....++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~~l   75 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHT-----ENKLML   75 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEee-----CCcEEE
Confidence            4888899999999999999999899999999997653 2334667889999999999999999998653     677899


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      ||||+++ ++.+++....
T Consensus        76 v~e~~~~-~l~~~~~~~~   92 (284)
T cd07836          76 VFEYMDK-DLKKYMDTHG   92 (284)
T ss_pred             EEecCCc-cHHHHHHhcC
Confidence            9999985 7888876543

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=98.82  E-value=8.2e-09  Score=102.04  Aligned_cols=93  Identities=24%  Similarity=0.389  Sum_probs=79.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ++|++.+.||+|+||.||+|....+|+.||+|+....   .....+.+.+|+.+++++. ||||+++++.+     ....
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~-----~~~~   75 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTF-----QDEE   75 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHh-----cCCc
Confidence            4689999999999999999999989999999998653   2233466889999999998 99999999984     4578


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..+++|||++++++.+++.+..
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~~   97 (280)
T cd05581          76 NLYFVLEYAPNGELLQYIRKYG   97 (280)
T ss_pred             eEEEEEcCCCCCcHHHHHHHcC
Confidence            8999999999999999986543

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=98.81  E-value=1.2e-08  Score=101.32  Aligned_cols=94  Identities=23%  Similarity=0.455  Sum_probs=74.2

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhc---CCCCcccccceeeeccccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNV---RHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l---~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      +|++.+.||+|+||.||+|++..+|+.||+|.++...  ......+.+|+.+++.+   +||||+++++++.........
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            4888899999999999999999999999999987542  22334567788777665   699999999987653334456


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..+++|||+++ ++.+++..
T Consensus        81 ~~~lv~e~~~~-~l~~~~~~   99 (288)
T cd07863          81 KVTLVFEHVDQ-DLRTYLDK   99 (288)
T ss_pred             eEEEEEccccc-CHHHHHHh
Confidence            78999999985 78777754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=98.81  E-value=7.6e-09  Score=102.36  Aligned_cols=94  Identities=22%  Similarity=0.455  Sum_probs=78.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..+|+..++||+|+||.||+|...     .++..+|+|............+.+|+++++.++|+||+++++++.     .
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~   78 (280)
T cd05092           4 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCT-----E   78 (280)
T ss_pred             hHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEe-----c
Confidence            356788899999999999999753     346689999887665556678999999999999999999998854     3


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ....+++|||+++|++.+++....
T Consensus        79 ~~~~~lv~e~~~~~~L~~~i~~~~  102 (280)
T cd05092          79 GRPLLMVFEYMRHGDLNRFLRSHG  102 (280)
T ss_pred             CCceEEEEecCCCCCHHHHHHhcC
Confidence            677899999999999999997554

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=98.81  E-value=8.2e-09  Score=101.47  Aligned_cols=86  Identities=24%  Similarity=0.450  Sum_probs=69.8

Q ss_pred             ceeecCCceeEEEEEECC--CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeec
Q 042887           54 NMIGQGSFGFVYKGKLGE--TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~--~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      +.||+|+||.||+|.+..  ++..+|+|.++... ......+.+|+.++++++||||+++++.+.     .....++|||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~lv~e   75 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCT-----EVTPYLLVME   75 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEc-----CCCCcEEEEE
Confidence            368999999999998643  44679999886543 233457889999999999999999999854     3567899999


Q ss_pred             ccccCCchhhhhcc
Q 042887          131 YMKCGSSEDWMHQS  144 (628)
Q Consensus       131 ~~~~g~L~~~l~~~  144 (628)
                      |+++|+|.+++...
T Consensus        76 ~~~~g~L~~~l~~~   89 (269)
T cd05087          76 FCPLGDLKGYLRSC   89 (269)
T ss_pred             CCCCCcHHHHHHHh
Confidence            99999999998654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=98.81  E-value=7.2e-09  Score=103.17  Aligned_cols=91  Identities=23%  Similarity=0.333  Sum_probs=77.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      +.|.....||+|+||.||++....+++.||+|.+........+.+.+|+..++.++||||+++++.+.     .....++
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~-----~~~~~~l   96 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYL-----VGDELWV   96 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHhee-----cCCeEEE
Confidence            34455577999999999999998899999999987655455677899999999999999999999854     4678899


Q ss_pred             eecccccCCchhhhhc
Q 042887          128 IYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~  143 (628)
                      ||||++++++.+++..
T Consensus        97 v~e~~~~~~L~~~~~~  112 (292)
T cd06658          97 VMEFLEGGALTDIVTH  112 (292)
T ss_pred             EEeCCCCCcHHHHHhc
Confidence            9999999999988753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=98.81  E-value=1.1e-08  Score=100.80  Aligned_cols=95  Identities=27%  Similarity=0.528  Sum_probs=75.2

Q ss_pred             CCcCceeecCCceeEEEEEECCC---CcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc-ccccc
Q 042887           50 FSASNMIGQGSFGFVYKGKLGET---GTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKGVD  123 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~~~  123 (628)
                      |++.+.||+|+||.||+|....+   +..||+|.++...  ......+.+|++.++.++||||+++++.+.... .....
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            56788999999999999997643   3789999987542  234567899999999999999999998865421 12334


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++++||+++|++.+++...
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~  101 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYS  101 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHh
Confidence            579999999999999888554

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=98.81  E-value=1.2e-08  Score=101.32  Aligned_cols=89  Identities=26%  Similarity=0.515  Sum_probs=75.5

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||+|++..+++.||+|.+....  ....+.+.+|+.+++.++||||+++++.+.     .....|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~   75 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLM-----QESRLY   75 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEe-----eCCeEE
Confidence            5788899999999999999998899999999986542  233467889999999999999999999854     467889


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +||||++ +++.+++..
T Consensus        76 ~v~e~~~-~~l~~~~~~   91 (285)
T cd07861          76 LIFEFLS-MDLKKYLDS   91 (285)
T ss_pred             EEEecCC-CCHHHHHhc
Confidence            9999998 578888754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=98.81  E-value=5e-09  Score=105.19  Aligned_cols=96  Identities=21%  Similarity=0.393  Sum_probs=77.8

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECC-------CCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceee
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGE-------TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCS  115 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~-------~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~  115 (628)
                      ...++|.+.+.||+|+||.||+|++..       ++..+|+|.+.... ......+.+|+.+++.+ +||||+++++++.
T Consensus        15 ~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (307)
T cd05098          15 VPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT   94 (307)
T ss_pred             eehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe
Confidence            334679999999999999999998643       23569999987542 23445688999999999 7999999999864


Q ss_pred             eccccccceeeeeecccccCCchhhhhccc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .     .+..|+||||+++|+|.+++....
T Consensus        95 ~-----~~~~~lv~e~~~~~~L~~~i~~~~  119 (307)
T cd05098          95 Q-----DGPLYVIVEYASKGNLREYLRARR  119 (307)
T ss_pred             c-----CCceEEEEecCCCCcHHHHHHhcC
Confidence            3     678899999999999999997643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=98.81  E-value=9.3e-09  Score=101.96  Aligned_cols=91  Identities=26%  Similarity=0.490  Sum_probs=75.7

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||+|++..+|+.||+|.++...  ......+.+|++++++++||||+++++.+     .+....+
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~-----~~~~~~~   75 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVL-----HSDKKLT   75 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHh-----ccCCceE
Confidence            4788899999999999999999999999999987542  22345678899999999999999999984     4577899


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +++||+. +++.+++....
T Consensus        76 lv~e~~~-~~l~~~~~~~~   93 (284)
T cd07839          76 LVFEYCD-QDLKKYFDSCN   93 (284)
T ss_pred             EEEecCC-CCHHHHHHhcC
Confidence            9999997 47777775443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=98.80  E-value=1.5e-08  Score=99.90  Aligned_cols=97  Identities=26%  Similarity=0.375  Sum_probs=81.1

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccc-cccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDF-KGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~-~~~~  123 (628)
                      +.++|++.+.||+|+||.||+|.+..+++.+|+|.+..... ..+.+.+|+.+++++ .|+||+++++.+..... ....
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            46789999999999999999999988899999999876543 346788999999999 69999999998764221 2356


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..+++|||++++++.+++..
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~  102 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKG  102 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHH
Confidence            68999999999999988764

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=98.80  E-value=1e-08  Score=101.42  Aligned_cols=94  Identities=28%  Similarity=0.509  Sum_probs=77.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCc----EEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGT----TVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~----~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..+|++.+.||+|+||.||+|.+..+|+    .+|+|...... ......+.+|+..+++++||||+++++.+..     
T Consensus         6 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   80 (279)
T cd05057           6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-----   80 (279)
T ss_pred             HHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----
Confidence            3568889999999999999999876665    58999876543 3345678899999999999999999998642     


Q ss_pred             cceeeeeecccccCCchhhhhcccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                       ...+++|||+++|++.+++.+...
T Consensus        81 -~~~~~v~e~~~~g~L~~~l~~~~~  104 (279)
T cd05057          81 -SQVQLITQLMPLGCLLDYVRNHKD  104 (279)
T ss_pred             -CceEEEEecCCCCcHHHHHHhccC
Confidence             678999999999999999876543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=98.80  E-value=8.4e-09  Score=102.95  Aligned_cols=91  Identities=22%  Similarity=0.348  Sum_probs=77.0

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      ..|+....||+|+||.||+|....+++.||+|.+........+.+.+|+.+++.+.||||+++++.+.     .....|+
T Consensus        21 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~-----~~~~~~i   95 (297)
T cd06659          21 SLLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYL-----VGEELWV   95 (297)
T ss_pred             hhHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhhee-----eCCeEEE
Confidence            44555567999999999999998899999999987654445567889999999999999999999854     4678999


Q ss_pred             eecccccCCchhhhhc
Q 042887          128 IYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~  143 (628)
                      ++||++++++.+++..
T Consensus        96 v~e~~~~~~L~~~~~~  111 (297)
T cd06659          96 LMEFLQGGALTDIVSQ  111 (297)
T ss_pred             EEecCCCCCHHHHHhh
Confidence            9999999999887643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=98.80  E-value=1.4e-08  Score=99.02  Aligned_cols=91  Identities=18%  Similarity=0.308  Sum_probs=76.8

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||++.+..+++.||+|.+....  ....+.+.+|+.++++++|+|++++++.+.    ......+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~----~~~~~~~   76 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWE----GEDGLLY   76 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeec----CCCCEEE
Confidence            5889999999999999999999899999999986542  334567889999999999999999987642    1345689


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      ++|||++++++.+++..
T Consensus        77 lv~e~~~~~~l~~~l~~   93 (257)
T cd08223          77 IVMGFCEGGDLYHKLKE   93 (257)
T ss_pred             EEecccCCCcHHHHHHH
Confidence            99999999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=98.80  E-value=1.2e-08  Score=104.99  Aligned_cols=96  Identities=23%  Similarity=0.271  Sum_probs=76.3

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKG  121 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~  121 (628)
                      ...++|++.+.||+|+||.||+|.+..+|+.||+|.+...  .......+.+|+.+++.++||||+++++++... .+..
T Consensus        18 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   97 (359)
T cd07876          18 TVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEE   97 (359)
T ss_pred             hhhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccc
Confidence            3457899999999999999999999999999999998653  233456788999999999999999999986531 1223


Q ss_pred             cceeeeeecccccCCchhhh
Q 042887          122 VDFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l  141 (628)
                      ....|+||||+.+ ++.+.+
T Consensus        98 ~~~~~lv~e~~~~-~l~~~~  116 (359)
T cd07876          98 FQDVYLVMELMDA-NLCQVI  116 (359)
T ss_pred             cceeEEEEeCCCc-CHHHHH
Confidence            3467999999976 455444

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=98.80  E-value=1.2e-08  Score=100.86  Aligned_cols=90  Identities=30%  Similarity=0.430  Sum_probs=76.9

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcC---CCCcccccceeeeccccccce
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVR---HRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .|+..+.||+|+||.||+|.+..+++.||+|.++.. .....+.+.+|+.++++++   |||++++++.+.     ....
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~-----~~~~   76 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYL-----KGPR   76 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeee-----eCCE
Confidence            477888999999999999999999999999998654 2334567889999999996   999999999854     4678


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .+++|||+++++|.+++..
T Consensus        77 ~~lv~e~~~~~~L~~~~~~   95 (277)
T cd06917          77 LWIIMEYAEGGSVRTLMKA   95 (277)
T ss_pred             EEEEEecCCCCcHHHHHHc
Confidence            8999999999999988754

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=98.80  E-value=7.3e-09  Score=101.24  Aligned_cols=90  Identities=28%  Similarity=0.486  Sum_probs=75.2

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|++.+.||+|+||.||+|... ++..+|+|.+..... ..+.+.+|+.++++++|++++++++.+.      ....
T Consensus         4 ~~~~~~~~~~ig~g~~~~v~~~~~~-~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~------~~~~   75 (260)
T cd05070           4 PRESLQLIKKLGNGQFGEVWMGTWN-GNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS------EEPI   75 (260)
T ss_pred             chHHhhhhheeccccCceEEEEEec-CCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC------CCCc
Confidence            3567999999999999999999875 567799999875433 3467899999999999999999988742      3457


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      +++|||++++++.+++..
T Consensus        76 ~lv~e~~~~~~L~~~~~~   93 (260)
T cd05070          76 YIVTEYMSKGSLLDFLKD   93 (260)
T ss_pred             EEEEEecCCCcHHHHHHh
Confidence            899999999999999865

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=98.80  E-value=1.1e-08  Score=102.23  Aligned_cols=93  Identities=24%  Similarity=0.510  Sum_probs=76.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCc--EEEEEEeecc-ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGT--TVAVKVMNLK-QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~--~~avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ++|++.+.||+|+||.||+|....++.  .+|+|.++.. .....+.+.+|+.++.++ +||||+++++.+.     ...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-----~~~   76 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACE-----NRG   76 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEc-----cCC
Confidence            578999999999999999999877764  4788887642 333456789999999999 6999999999854     467


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..++++||+++|++.+++....
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~   98 (297)
T cd05089          77 YLYIAIEYAPYGNLLDFLRKSR   98 (297)
T ss_pred             cceEEEEecCCCcHHHHHHhcc
Confidence            7899999999999999996543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=98.79  E-value=5.9e-09  Score=104.50  Aligned_cols=96  Identities=22%  Similarity=0.411  Sum_probs=78.1

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEEC-------CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceee
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLG-------ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCS  115 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~-------~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~  115 (628)
                      ...++|.+.+.||+|+||.||+|++.       .++..||+|...... ....+.+.+|+.+++.+ +||||+++++.+.
T Consensus        12 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   91 (304)
T cd05101          12 FSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT   91 (304)
T ss_pred             ccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEe
Confidence            34567899999999999999999853       234579999886532 33456789999999999 7999999999854


Q ss_pred             eccccccceeeeeecccccCCchhhhhccc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                           .....|++|||+++|+|.+++.+..
T Consensus        92 -----~~~~~~lv~e~~~~~~L~~~l~~~~  116 (304)
T cd05101          92 -----QDGPLYVIVEYASKGNLREYLRARR  116 (304)
T ss_pred             -----cCCceEEEEecCCCCcHHHHHHhcC
Confidence                 3678899999999999999997643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=98.79  E-value=1.4e-08  Score=100.60  Aligned_cols=89  Identities=28%  Similarity=0.548  Sum_probs=75.3

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|+..+.||+|+||.||+|++..+|+.||+|.+....  ......+.+|++++++++||||+++++++     ...+..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-----~~~~~~~   75 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVI-----HTENKLY   75 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhc-----ccCCcEE
Confidence            4788899999999999999999899999999886542  23345788999999999999999999984     4577899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +||||+. +++.+++..
T Consensus        76 ~v~e~~~-~~l~~~~~~   91 (284)
T cd07860          76 LVFEFLH-QDLKKFMDA   91 (284)
T ss_pred             EEeeccc-cCHHHHHHh
Confidence            9999996 578877754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=98.79  E-value=1.5e-08  Score=100.66  Aligned_cols=95  Identities=26%  Similarity=0.375  Sum_probs=82.6

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ...+.|+..+.+|+|+||.||+|.+..+++.||+|.+..... ..+.+.+|++.++.++|+||+++++.+..     ...
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~   89 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLV-----GDE   89 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEE-----CCE
Confidence            345678888999999999999999988899999999976544 45678899999999999999999998653     688


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+++||+++++|.+++....
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~  110 (286)
T cd06614          90 LWVVMEYMDGGSLTDIITQNF  110 (286)
T ss_pred             EEEEEeccCCCcHHHHHHHhc
Confidence            999999999999999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=98.79  E-value=8.6e-09  Score=100.75  Aligned_cols=92  Identities=25%  Similarity=0.426  Sum_probs=76.3

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ...++|++.+.||+|+||.||+|.+. .+..+|+|.+.... ...+.+.+|+.+++.++|+||+++++.+.     . ..
T Consensus         3 ~~~~~~~~~~~lg~g~~~~vy~~~~~-~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~-~~   74 (260)
T cd05073           3 IPRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-----K-EP   74 (260)
T ss_pred             ccccceeEEeEecCccceEEEEEEec-CCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEc-----C-CC
Confidence            45678999999999999999999874 45679999886533 23467899999999999999999988743     2 66


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .+++|||+++|++.+++...
T Consensus        75 ~~~v~e~~~~~~L~~~~~~~   94 (260)
T cd05073          75 IYIITEFMAKGSLLDFLKSD   94 (260)
T ss_pred             eEEEEEeCCCCcHHHHHHhC
Confidence            79999999999999998653

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=98.78  E-value=1.2e-08  Score=101.60  Aligned_cols=91  Identities=32%  Similarity=0.457  Sum_probs=74.6

Q ss_pred             CCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      +|++.+.||+|+||.||+|....     ....+|+|.+.... ....+.+.+|+.+++.++||||+++++.+.     ..
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~   75 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACS-----QD   75 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEe-----cC
Confidence            47888999999999999998743     23568998886543 234567899999999999999999999854     36


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...++++||+.+|++.+++...
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~   97 (290)
T cd05045          76 GPLLLIVEYAKYGSLRSFLRES   97 (290)
T ss_pred             CCcEEEEEecCCCCHHHHHHhc
Confidence            7789999999999999998654

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=98.78  E-value=7.9e-09  Score=105.08  Aligned_cols=96  Identities=21%  Similarity=0.389  Sum_probs=77.0

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCC-------CcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGET-------GTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVC  114 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~-------~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~  114 (628)
                      .....+|.+.+.||+|+||.||+|++...       +..||+|...... ....+.+.+|+.+++++ +||||+++++.+
T Consensus         8 ~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~   87 (334)
T cd05100           8 ELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGAC   87 (334)
T ss_pred             ccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEE
Confidence            33345689999999999999999986432       2368999886432 33456789999999999 799999999986


Q ss_pred             eeccccccceeeeeecccccCCchhhhhcc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..     ....++++||+++|+|.+++.+.
T Consensus        88 ~~-----~~~~~lv~e~~~~g~L~~~l~~~  112 (334)
T cd05100          88 TQ-----DGPLYVLVEYASKGNLREYLRAR  112 (334)
T ss_pred             cc-----CCceEEEEecCCCCcHHHHHHhc
Confidence            43     56789999999999999998754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=98.78  E-value=1.5e-08  Score=99.68  Aligned_cols=94  Identities=26%  Similarity=0.547  Sum_probs=74.0

Q ss_pred             CCcCceeecCCceeEEEEEECCCCc--EEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccce
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGT--TVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVDF  124 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~--~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~~  124 (628)
                      |.+.+.||+|+||.||+|++..++.  .+|+|.++..  .....+.+.+|+.+++.++||||+++++.+... .......
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   80 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPS   80 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCC
Confidence            4567889999999999999876665  5899988653  334467789999999999999999999876431 1122345


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .+++|||+++|++.+++..
T Consensus        81 ~~~v~e~~~~~~l~~~~~~   99 (272)
T cd05075          81 PVVILPFMKHGDLHSFLLY   99 (272)
T ss_pred             cEEEEEeCCCCcHHHHHHH
Confidence            7899999999999988753

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=98.78  E-value=1.5e-08  Score=100.04  Aligned_cols=85  Identities=21%  Similarity=0.306  Sum_probs=71.9

Q ss_pred             eecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           56 IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        56 iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      ||+|+||.||+|.+..+|+.||+|.+....   ......+.+|+++++.++||||+++++.+     +..+..|+||||+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~-----~~~~~~~lv~e~~   75 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAF-----ETKDDLCLVMTLM   75 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEE-----ecCCeEEEEEecC
Confidence            699999999999999899999999986532   22345678899999999999999998884     4467899999999


Q ss_pred             ccCCchhhhhccc
Q 042887          133 KCGSSEDWMHQSN  145 (628)
Q Consensus       133 ~~g~L~~~l~~~~  145 (628)
                      ++++|.+++....
T Consensus        76 ~~~~L~~~l~~~~   88 (277)
T cd05577          76 NGGDLKYHIYNVG   88 (277)
T ss_pred             CCCcHHHHHHHcC
Confidence            9999999886544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=98.78  E-value=1.5e-08  Score=98.26  Aligned_cols=86  Identities=28%  Similarity=0.498  Sum_probs=71.2

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      +.||+|+||.||+|... +++.+|+|...... ......+.+|+++++.++||||+++++.+..     ....++||||+
T Consensus         1 ~~ig~g~~g~vy~~~~~-~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~lv~e~~   74 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-DKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQ-----RQPIYIVMELV   74 (250)
T ss_pred             CccCCCCCceEEEEEec-CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEec-----CCccEEEEECC
Confidence            46899999999999874 68899999886543 2234568899999999999999999998653     56789999999


Q ss_pred             ccCCchhhhhccc
Q 042887          133 KCGSSEDWMHQSN  145 (628)
Q Consensus       133 ~~g~L~~~l~~~~  145 (628)
                      ++|++.+++....
T Consensus        75 ~~~~L~~~~~~~~   87 (250)
T cd05085          75 PGGDFLSFLRKKK   87 (250)
T ss_pred             CCCcHHHHHHhcC
Confidence            9999999886543

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=98.78  E-value=1.8e-08  Score=102.57  Aligned_cols=95  Identities=20%  Similarity=0.351  Sum_probs=78.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|.+... .......+.+|+.++++++||||+++++++....+......
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            46799999999999999999999999999999998643 23345668899999999999999999998765445555678


Q ss_pred             eeeecccccCCchhhhh
Q 042887          126 ALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~  142 (628)
                      |+++||+.+ ++.+.+.
T Consensus        84 ~lv~e~~~~-~l~~~~~   99 (336)
T cd07849          84 YIVQELMET-DLYKLIK   99 (336)
T ss_pred             EEEehhccc-CHHHHHh
Confidence            999999974 7766664

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PTZ00036 glycogen synthase kinase; Provisional

Probab=98.78  E-value=1.6e-08  Score=106.53  Aligned_cols=92  Identities=24%  Similarity=0.360  Sum_probs=72.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc---ccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF---KGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~---~~~  122 (628)
                      ..++|++.+.||+|+||.||+|.+..+++.||||.+....    ....+|+.+|+.++|||||++++++....+   +..
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~  139 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN  139 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence            3467999999999999999999999999999999885432    234579999999999999999887543111   223


Q ss_pred             ceeeeeecccccCCchhhhh
Q 042887          123 DFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~  142 (628)
                      .+.++||||+++ ++.+++.
T Consensus       140 ~~l~lvmE~~~~-~l~~~~~  158 (440)
T PTZ00036        140 IFLNVVMEFIPQ-TVHKYMK  158 (440)
T ss_pred             eEEEEEEecCCc-cHHHHHH
Confidence            457799999985 6766664

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=98.77  E-value=1.7e-08  Score=98.46  Aligned_cols=91  Identities=27%  Similarity=0.563  Sum_probs=77.1

Q ss_pred             CCcCceeecCCceeEEEEEECCCC----cEEEEEEeeccccc-hhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETG----TTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~----~~~avK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      +++.+.||.|+||.||+|.+...+    ..||+|.+...... ..+.+.+|++.++.+.|+||+++++.+.     ....
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~   75 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCT-----EEEP   75 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEc-----CCCe
Confidence            356788999999999999998766    88999999765432 5678999999999999999999999854     3578


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .+++|||++++++.+++....
T Consensus        76 ~~~i~e~~~~~~l~~~~~~~~   96 (258)
T smart00219       76 LMIVMEYMEGGDLLDYLRKNR   96 (258)
T ss_pred             eEEEEeccCCCCHHHHHHhhh
Confidence            999999999999999987544

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=98.77  E-value=1.5e-08  Score=98.76  Aligned_cols=91  Identities=23%  Similarity=0.503  Sum_probs=75.9

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      .+|++.+.||+|+||.||+|.+. .++.+|+|.+..... ....+.+|+++++++.||+|+++++.+.     .....++
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~~~   76 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWL-EKRKVAIKTIREGAM-SEEDFIEEAQVMMKLSHPKLVQLYGVCT-----ERSPICL   76 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEe-CCCeEEEEECCCCCC-CHHHHHHHHHHHHhCCCCCeeeEEEEEc-----cCCceEE
Confidence            46888899999999999999885 467899998864332 2357899999999999999999998843     4678899


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      +|||+++++|.+++....
T Consensus        77 v~e~~~~~~L~~~~~~~~   94 (256)
T cd05112          77 VFEFMEHGCLSDYLRAQR   94 (256)
T ss_pred             EEEcCCCCcHHHHHHhCc
Confidence            999999999999886544

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=98.77  E-value=9.8e-09  Score=102.20  Aligned_cols=94  Identities=28%  Similarity=0.486  Sum_probs=78.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..+|.+.+.||+|+||.||+|++..     ++..+|+|.+........+.+.+|++++++++||||+++++.+.     .
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~   78 (291)
T cd05094           4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCG-----D   78 (291)
T ss_pred             hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEc-----c
Confidence            3468888999999999999998642     44568999887655555577899999999999999999999854     4


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ....++||||++++++.+++....
T Consensus        79 ~~~~~lv~e~~~~~~L~~~i~~~~  102 (291)
T cd05094          79 GDPLIMVFEYMKHGDLNKFLRAHG  102 (291)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcC
Confidence            678899999999999999997644

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=98.77  E-value=9.5e-09  Score=103.51  Aligned_cols=97  Identities=22%  Similarity=0.401  Sum_probs=77.8

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECC-------CCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGE-------TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVC  114 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~-------~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~  114 (628)
                      ....++|.+.+.||+|+||.||+|++..       ....+|+|.+.... ......+.+|+.+++++ +||||+++++++
T Consensus         8 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~   87 (314)
T cd05099           8 EFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVC   87 (314)
T ss_pred             cccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEE
Confidence            3445678899999999999999998632       34569999987532 33456788999999999 599999999986


Q ss_pred             eeccccccceeeeeecccccCCchhhhhccc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .     .....|++|||+++|+|.+++....
T Consensus        88 ~-----~~~~~~lv~e~~~~g~L~~~i~~~~  113 (314)
T cd05099          88 T-----QEGPLYVIVEYAAKGNLREFLRARR  113 (314)
T ss_pred             c-----cCCceEEEEecCCCCcHHHHHHhcC
Confidence            4     3667899999999999999997643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=98.76  E-value=1.8e-08  Score=102.92  Aligned_cols=97  Identities=18%  Similarity=0.244  Sum_probs=76.7

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc-ccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKG  121 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~  121 (628)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|.+....  ....+.+.+|+.+++.++||||+++++++.... ...
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence            34578999999999999999999999999999999986532  233456789999999999999999998864311 122


Q ss_pred             cceeeeeecccccCCchhhhh
Q 042887          122 VDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~  142 (628)
                      ....|+++|++ ++++.+++.
T Consensus        92 ~~~~~~~~~~~-~~~l~~~~~  111 (343)
T cd07878          92 FNEVYLVTNLM-GADLNNIVK  111 (343)
T ss_pred             cCcEEEEeecC-CCCHHHHHh
Confidence            34578999987 678877764

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=98.76  E-value=2.7e-09  Score=107.09  Aligned_cols=86  Identities=26%  Similarity=0.423  Sum_probs=71.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      +...-.+-+|.|+-|-||.|+.  .++.||||.++.-.+       .+|.-|++++||||+.+.++|+.     ...+++
T Consensus       124 e~IsELeWlGSGaQGAVF~Grl--~netVAVKKV~elkE-------TdIKHLRkLkH~NII~FkGVCtq-----sPcyCI  189 (904)
T KOG4721|consen  124 EEISELEWLGSGAQGAVFLGRL--HNETVAVKKVRELKE-------TDIKHLRKLKHPNIITFKGVCTQ-----SPCYCI  189 (904)
T ss_pred             HHhhhhhhhccCcccceeeeec--cCceehhHHHhhhhh-------hhHHHHHhccCcceeeEeeeecC-----CceeEE
Confidence            3334456799999999999999  678999998864332       46777999999999999999975     688999


Q ss_pred             eecccccCCchhhhhccccc
Q 042887          128 IYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~~~  147 (628)
                      |||||+.|-|.+.++..+.-
T Consensus       190 iMEfCa~GqL~~VLka~~~i  209 (904)
T KOG4721|consen  190 IMEFCAQGQLYEVLKAGRPI  209 (904)
T ss_pred             eeeccccccHHHHHhccCcc
Confidence            99999999999999876643

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=98.76  E-value=1.7e-08  Score=98.54  Aligned_cols=85  Identities=24%  Similarity=0.465  Sum_probs=69.2

Q ss_pred             eeecCCceeEEEEEEC--CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeecc
Q 042887           55 MIGQGSFGFVYKGKLG--ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEY  131 (628)
Q Consensus        55 ~iG~G~~g~V~~~~~~--~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~  131 (628)
                      .||+|+||.||+|.+.  .++..||+|+..... ....+.+.+|+.++++++||||+++++++.      ....++||||
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~------~~~~~lv~e~   75 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE------AEALMLVMEM   75 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc------CCCeEEEEEe
Confidence            3899999999999875  345679999986543 334467899999999999999999998753      3567999999


Q ss_pred             cccCCchhhhhccc
Q 042887          132 MKCGSSEDWMHQSN  145 (628)
Q Consensus       132 ~~~g~L~~~l~~~~  145 (628)
                      +++|+|.+++....
T Consensus        76 ~~~~~L~~~l~~~~   89 (257)
T cd05115          76 ASGGPLNKFLSGKK   89 (257)
T ss_pred             CCCCCHHHHHHhCC
Confidence            99999999886543

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=98.76  E-value=1.7e-08  Score=99.94  Aligned_cols=90  Identities=18%  Similarity=0.236  Sum_probs=71.9

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHH-HhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEA-LSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~-l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||+|.++... .....++..|+.. ++...||||+++++.+.     .....
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~-----~~~~~   75 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALF-----REGDV   75 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEe-----cCCcE
Confidence            46888999999999999999999999999999987542 2233456667665 56668999999999854     36789


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      |++|||++ |++.+++..
T Consensus        76 ~lv~e~~~-~~l~~~l~~   92 (283)
T cd06617          76 WICMEVMD-TSLDKFYKK   92 (283)
T ss_pred             EEEhhhhc-ccHHHHHHH
Confidence            99999997 577777654

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=98.76  E-value=1.7e-08  Score=99.23  Aligned_cols=87  Identities=21%  Similarity=0.370  Sum_probs=69.3

Q ss_pred             ceeecCCceeEEEEEECC--CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeec
Q 042887           54 NMIGQGSFGFVYKGKLGE--TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~--~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      +.||+|+||.||+|....  ....+|+|.+.... ......+.+|+.+++.++||||+++++.+.     .....++|||
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~-----~~~~~~lv~e   75 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCI-----ESIPYLLVLE   75 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEEC-----CCCceEEEEE
Confidence            359999999999997533  33468888775432 233456889999999999999999999854     3677899999


Q ss_pred             ccccCCchhhhhccc
Q 042887          131 YMKCGSSEDWMHQSN  145 (628)
Q Consensus       131 ~~~~g~L~~~l~~~~  145 (628)
                      |+++|+|.+++....
T Consensus        76 ~~~~g~L~~~l~~~~   90 (269)
T cd05042          76 FCPLGDLKNYLRSNR   90 (269)
T ss_pred             eCCCCcHHHHHHhcc
Confidence            999999999997654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=98.76  E-value=1.8e-08  Score=98.07  Aligned_cols=90  Identities=24%  Similarity=0.345  Sum_probs=77.9

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||++.+..+++.+|+|.+....  ......+.+|++++++++|+||+++++.+.     .....+
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~~   75 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFL-----DGNKLC   75 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhc-----cCCEEE
Confidence            4788899999999999999999999999999987542  334567789999999999999999998843     468899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +|+||++++++.+++.+
T Consensus        76 ~v~e~~~~~~L~~~~~~   92 (256)
T cd08530          76 IVMEYAPFGDLSKAISK   92 (256)
T ss_pred             EEehhcCCCCHHHHHHH
Confidence            99999999999999865

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=98.76  E-value=1.5e-08  Score=100.10  Aligned_cols=93  Identities=22%  Similarity=0.388  Sum_probs=73.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcE----EEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTT----VAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~----~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ++|++.+.||+|+||.||+|.+..+++.    +|+|.+.... ......+..|+.+++++.||||+++++++.      .
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~------~   80 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP------G   80 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC------C
Confidence            5688889999999999999999777764    6777764332 223456778888899999999999999853      3


Q ss_pred             ceeeeeecccccCCchhhhhcccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ...++++||+++|++.+++.....
T Consensus        81 ~~~~~i~e~~~~gsL~~~l~~~~~  104 (279)
T cd05111          81 ASLQLVTQLSPLGSLLDHVRQHRD  104 (279)
T ss_pred             CccEEEEEeCCCCcHHHHHHhccc
Confidence            457899999999999999976443

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.76  E-value=1.8e-08  Score=99.92  Aligned_cols=91  Identities=29%  Similarity=0.433  Sum_probs=73.8

Q ss_pred             CCcCceeecCCceeEEEEEE----CCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           50 FSASNMIGQGSFGFVYKGKL----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~----~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      |+..+.||+|+||.||++.+    ..+++.||+|.+.... ....+.+.+|++++++++||||+++++++..   .....
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~~~   82 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSE---QGGKG   82 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---CCCce
Confidence            37889999999999987653    3467889999987543 2345678899999999999999999988653   23456


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .+++|||+++|++.+++..
T Consensus        83 ~~lv~e~~~~~~l~~~~~~  101 (283)
T cd05080          83 LQLIMEYVPLGSLRDYLPK  101 (283)
T ss_pred             EEEEecCCCCCCHHHHHHH
Confidence            8999999999999998864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=98.75  E-value=1.4e-08  Score=100.79  Aligned_cols=90  Identities=23%  Similarity=0.399  Sum_probs=76.1

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.++...  ....+.+.+|+++++.++|+||+++++.+..     .+..
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~   75 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRR-----KGRL   75 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEE-----CCEE
Confidence            36889999999999999999999899999999886532  3345678999999999999999999999643     6789


Q ss_pred             eeeecccccCCchhhhh
Q 042887          126 ALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~  142 (628)
                      +++|||++++.+..+..
T Consensus        76 ~iv~e~~~~~~l~~~~~   92 (288)
T cd07833          76 YLVFEYVERTLLELLEA   92 (288)
T ss_pred             EEEEecCCCCHHHHHHh
Confidence            99999999877665543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=98.75  E-value=1.9e-08  Score=103.26  Aligned_cols=97  Identities=20%  Similarity=0.255  Sum_probs=77.1

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKG  121 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~  121 (628)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|.+...  .......+.+|+.+++.++||||+++++++... .+..
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            3467899999999999999999999889999999998753  233456788999999999999999999986531 1233


Q ss_pred             cceeeeeecccccCCchhhhh
Q 042887          122 VDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~  142 (628)
                      ....|+||||+++ ++.+.+.
T Consensus        94 ~~~~~lv~e~~~~-~l~~~~~  113 (355)
T cd07874          94 FQDVYLVMELMDA-NLCQVIQ  113 (355)
T ss_pred             cceeEEEhhhhcc-cHHHHHh
Confidence            4568999999975 5555553

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=98.75  E-value=2.1e-08  Score=100.64  Aligned_cols=92  Identities=28%  Similarity=0.363  Sum_probs=75.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      +.+.|+..+.||+|+||.||+|....+|+.||+|.+....   ....+.+.+|+++++.++||||+++++++.+     .
T Consensus        13 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~-----~   87 (307)
T cd06607          13 PEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLR-----E   87 (307)
T ss_pred             cchhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEe-----C
Confidence            3456889999999999999999998899999999986432   2334568899999999999999999999654     6


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...|+|+||+. |++.+++..
T Consensus        88 ~~~~lv~e~~~-g~l~~~~~~  107 (307)
T cd06607          88 HTAWLVMEYCL-GSASDILEV  107 (307)
T ss_pred             CeEEEEHHhhC-CCHHHHHHH
Confidence            77899999997 566666543

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=98.74  E-value=2.6e-08  Score=97.01  Aligned_cols=91  Identities=22%  Similarity=0.358  Sum_probs=79.0

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||++.+..+++.||+|.+.....  .....+.+|+++++.++|||++++.+.+.     .....+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~-----~~~~~~   75 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFE-----EKGKLC   75 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEe-----cCCEEE
Confidence            47888999999999999999988899999999976432  45567889999999999999999998854     358899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +++||++++++.+++...
T Consensus        76 lv~e~~~~~~L~~~l~~~   93 (258)
T cd08215          76 IVMEYADGGDLSQKIKKQ   93 (258)
T ss_pred             EEEEecCCCcHHHHHHHh
Confidence            999999999999988764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=98.74  E-value=2.8e-08  Score=99.09  Aligned_cols=96  Identities=23%  Similarity=0.419  Sum_probs=76.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|......  ......+.+|+.+++.+. ||||+++++.+...+......
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            46889999999999999999999999999999986542  223467889999999995 699999998865422222334


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|++|||+++ ++.+++...
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~   99 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSN   99 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHh
Confidence            8999999985 788887643

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=98.74  E-value=2.8e-08  Score=96.61  Aligned_cols=91  Identities=36%  Similarity=0.553  Sum_probs=79.0

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||+|....+++.||+|.+.....  ...+.+.+|++++.+++|||++++++.+.     .....+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~~   75 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIE-----TSDSLY   75 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE-----eCCEEE
Confidence            47888999999999999999988999999999976543  45577999999999999999999998854     367889


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||++++++.+++...
T Consensus        76 ~v~e~~~~~~L~~~~~~~   93 (254)
T cd06627          76 IILEYAENGSLRQIIKKF   93 (254)
T ss_pred             EEEecCCCCcHHHHHHhc
Confidence            999999999999988654

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=98.74  E-value=1.6e-08  Score=98.65  Aligned_cols=91  Identities=29%  Similarity=0.493  Sum_probs=76.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..+|++.+.||+|+||.||+|..  .|+.||+|..+...  ..+.+.+|+.++++++|++++++++++.    ......+
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~--~~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~----~~~~~~~   76 (256)
T cd05082           5 MKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIV----EEKGGLY   76 (256)
T ss_pred             HHhCeeeeeecccCCCeEEEEEE--cCCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEE----cCCCceE
Confidence            45789999999999999999988  57889999886432  3467899999999999999999998753    3456789


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++|||+++|++.+++....
T Consensus        77 lv~e~~~~~~L~~~~~~~~   95 (256)
T cd05082          77 IVTEYMAKGSLVDYLRSRG   95 (256)
T ss_pred             EEEECCCCCcHHHHHHhcC
Confidence            9999999999999987543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=98.74  E-value=1.7e-08  Score=100.40  Aligned_cols=86  Identities=23%  Similarity=0.354  Sum_probs=74.4

Q ss_pred             CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      ...||+|+||.||+|....+|+.||+|.+..........+.+|+.+++.++|+||+++++.+.     .....+++|||+
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~~~~lv~e~~   99 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDELWVVMEFL   99 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEE-----eCCEEEEEEecC
Confidence            367999999999999999899999999986554445567899999999999999999999854     477899999999


Q ss_pred             ccCCchhhhhc
Q 042887          133 KCGSSEDWMHQ  143 (628)
Q Consensus       133 ~~g~L~~~l~~  143 (628)
                      +++++.+++..
T Consensus       100 ~~~~L~~~~~~  110 (292)
T cd06657         100 EGGALTDIVTH  110 (292)
T ss_pred             CCCcHHHHHhc
Confidence            99999887743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=98.74  E-value=2.4e-08  Score=102.83  Aligned_cols=96  Identities=19%  Similarity=0.243  Sum_probs=77.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-ccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~  122 (628)
                      ..++|++.+.||+|+||.||+|.+..+++.||||.+...  .......+.+|+.+++.++||||+++++++... .+...
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            457899999999999999999999999999999998653  233456788999999999999999999876531 12334


Q ss_pred             ceeeeeecccccCCchhhhh
Q 042887          123 DFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~  142 (628)
                      ...|+||||+++ ++.+++.
T Consensus       102 ~~~~lv~e~~~~-~l~~~~~  120 (364)
T cd07875         102 QDVYIVMELMDA-NLCQVIQ  120 (364)
T ss_pred             CeEEEEEeCCCC-CHHHHHH
Confidence            568999999975 5665553

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=98.73  E-value=3.4e-08  Score=96.23  Aligned_cols=94  Identities=23%  Similarity=0.402  Sum_probs=79.2

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|+..+.||+|+||.||+|....+++.|++|.+.....  ...+.+.+|++++++++||||+++++.+.+   ......+
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---~~~~~~~   77 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERD---EEKNTLN   77 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEec---CCCCeEE
Confidence            47778999999999999999988999999999876542  446778999999999999999999988643   1127889


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +++||++++++.+++....
T Consensus        78 lv~e~~~~~~L~~~~~~~~   96 (260)
T cd06606          78 IFLEYVSGGSLSSLLKKFG   96 (260)
T ss_pred             EEEEecCCCcHHHHHHHcC
Confidence            9999999999999986543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=98.73  E-value=2.4e-08  Score=97.01  Aligned_cols=86  Identities=33%  Similarity=0.497  Sum_probs=73.0

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccccc-hhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      +.||+|+||.||+|.+.. ++.||+|.+...... ..+.+.+|++++++++|+||+++++.+.     .....++||||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~~~v~e~~   74 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCV-----QKQPIYIVMELV   74 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe-----cCCCeEEEEEcC
Confidence            469999999999999976 899999998765332 4567899999999999999999998854     467889999999


Q ss_pred             ccCCchhhhhccc
Q 042887          133 KCGSSEDWMHQSN  145 (628)
Q Consensus       133 ~~g~L~~~l~~~~  145 (628)
                      +++++.+++.+..
T Consensus        75 ~~~~l~~~l~~~~   87 (251)
T cd05041          75 PGGSLLTFLRKKK   87 (251)
T ss_pred             CCCcHHHHHHhcC
Confidence            9999999986544

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=98.73  E-value=2.2e-08  Score=98.99  Aligned_cols=94  Identities=24%  Similarity=0.461  Sum_probs=76.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCc----EEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGT----TVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~----~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..+|++.+.||+|+||.||+|.+..+|+    .||+|.+.... ....+.+.+|+.+++.+.||||+++++.+.      
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~------   79 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICL------   79 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEc------
Confidence            3568888999999999999999877776    48999886542 334567889999999999999999998864      


Q ss_pred             cceeeeeecccccCCchhhhhcccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ....++++||+++|++.+++....+
T Consensus        80 ~~~~~l~~~~~~~g~l~~~l~~~~~  104 (279)
T cd05109          80 TSTVQLVTQLMPYGCLLDYVRENKD  104 (279)
T ss_pred             CCCcEEEEEcCCCCCHHHHHhhccC
Confidence            3456799999999999999876443

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=98.73  E-value=3.3e-08  Score=99.38  Aligned_cols=95  Identities=27%  Similarity=0.468  Sum_probs=76.5

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|.++...  ......+.+|+.++++++|+||+++++++..   ....
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~~   81 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVG---KHLD   81 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEec---CCCC
Confidence            3568999999999999999999999999999999987543  2223456789999999999999999988643   2235


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++||||+.+ ++.+++...
T Consensus        82 ~~~lv~e~~~~-~l~~~l~~~  101 (309)
T cd07845          82 SIFLVMEYCEQ-DLASLLDNM  101 (309)
T ss_pred             eEEEEEecCCC-CHHHHHHhc
Confidence            68999999974 777777643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=98.73  E-value=2.1e-08  Score=99.14  Aligned_cols=95  Identities=22%  Similarity=0.420  Sum_probs=78.2

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECC----CCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGE----TGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~----~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      ..++|++.+.||+|+||.||+|.+..    +++.||+|.+... .....+.+.+|+.++++++||||+++++++..    
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~----   79 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIE----   79 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec----
Confidence            35679999999999999999999865    2578999988643 23345678899999999999999999998642    


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .....++++||+++|++.+++...
T Consensus        80 ~~~~~~~~~~~~~~~~L~~~l~~~  103 (280)
T cd05043          80 DGEPPFVLYPYMNWGNLKLFLQQC  103 (280)
T ss_pred             CCCCCEEEEEcCCCCcHHHHHHhc
Confidence            356788999999999999998654

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=98.72  E-value=2.7e-08  Score=99.22  Aligned_cols=90  Identities=26%  Similarity=0.496  Sum_probs=75.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|.+....  ....+.+.+|++++++++||||+++++++.     .....
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~   76 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVH-----SEKRL   76 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEe-----cCCeE
Confidence            57899999999999999999998899999999986542  233456889999999999999999999854     46789


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      |+||||++ +++.+++..
T Consensus        77 ~lv~e~~~-~~l~~~~~~   93 (294)
T PLN00009         77 YLVFEYLD-LDLKKHMDS   93 (294)
T ss_pred             EEEEeccc-ccHHHHHHh
Confidence            99999996 577777654

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=98.72  E-value=3.8e-08  Score=98.53  Aligned_cols=98  Identities=26%  Similarity=0.467  Sum_probs=77.3

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc----
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID----  118 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~----  118 (628)
                      ...++|++.+.+|+|+||.||+|.+..+|+.||+|.++...  ......+.+|+++++.++||||+++++++.+..    
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            35678999999999999999999999899999999997542  233456788999999999999999998865411    


Q ss_pred             -ccccceeeeeecccccCCchhhhhc
Q 042887          119 -FKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       119 -~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                       .+.....++++||+++ ++...+..
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~  108 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLES  108 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhc
Confidence             1123478999999986 66665543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=98.72  E-value=2.8e-08  Score=101.12  Aligned_cols=97  Identities=24%  Similarity=0.352  Sum_probs=77.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ..+|.+.+.||+|+||.||+|++..+++.||+|.+...  .......+.+|+.+++.++|+||+++++++..........
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            35799999999999999999999999999999998653  2334456788999999999999999999865422223346


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+++||+. +++.+++...
T Consensus        84 ~~lv~e~~~-~~L~~~~~~~  102 (337)
T cd07858          84 VYIVYELMD-TDLHQIIRSS  102 (337)
T ss_pred             EEEEEeCCC-CCHHHHHhcC
Confidence            899999996 6788777543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>PHA03209 serine/threonine kinase US3; Provisional

Probab=98.72  E-value=4.8e-08  Score=100.21  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=73.8

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ....+|++.+.||+|+||.||+|.+..+++.||+|+...      .....|+.++++++||||+++++++..     ...
T Consensus        63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~------~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~  131 (357)
T PHA03209         63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK------GTTLIEAMLLQNVNHPSVIRMKDTLVS-----GAI  131 (357)
T ss_pred             hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc------cccHHHHHHHHhCCCCCCcChhheEEe-----CCe
Confidence            345679999999999999999999998899999997533      234579999999999999999998653     678


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .++||||+. |++.+++....
T Consensus       132 ~~lv~e~~~-~~l~~~l~~~~  151 (357)
T PHA03209        132 TCMVLPHYS-SDLYTYLTKRS  151 (357)
T ss_pred             eEEEEEccC-CcHHHHHHhcc
Confidence            899999996 58888876544

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=98.72  E-value=3.4e-08  Score=100.74  Aligned_cols=97  Identities=21%  Similarity=0.269  Sum_probs=76.5

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc-cccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~~  122 (628)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|.+....  ....+.+.+|+.++++++||||+++++++.... ....
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            3567999999999999999999999999999999986432  223456889999999999999999998865311 1122


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..+++||||+ ++++.+++..
T Consensus        93 ~~~~lv~e~~-~~~l~~~~~~  112 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLMKH  112 (343)
T ss_pred             ceEEEEEecC-CCCHHHHHhc
Confidence            4568999998 6788877753

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=98.72  E-value=3.1e-08  Score=96.61  Aligned_cols=86  Identities=24%  Similarity=0.446  Sum_probs=70.7

Q ss_pred             ceeecCCceeEEEEEECCCC---cEEEEEEeecccc-chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETG---TTVAVKVMNLKQK-GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~---~~~avK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|.+...+   ..+|+|.+..... ...+.+.+|+.+++.++||||+++++.+.      ....+++|
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------~~~~~~v~   74 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK------GEPLMLVM   74 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc------CCceEEEE
Confidence            46999999999999876554   7899999875432 34567899999999999999999998743      34679999


Q ss_pred             cccccCCchhhhhccc
Q 042887          130 EYMKCGSSEDWMHQSN  145 (628)
Q Consensus       130 e~~~~g~L~~~l~~~~  145 (628)
                      ||+++|++.+++....
T Consensus        75 e~~~~~~L~~~l~~~~   90 (257)
T cd05060          75 ELAPLGPLLKYLKKRR   90 (257)
T ss_pred             EeCCCCcHHHHHHhCC
Confidence            9999999999987544

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.71  E-value=2.3e-08  Score=97.77  Aligned_cols=87  Identities=20%  Similarity=0.424  Sum_probs=69.6

Q ss_pred             ceeecCCceeEEEEEECCC------------CcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           54 NMIGQGSFGFVYKGKLGET------------GTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~------------~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      +.||+|+||.||+|.....            ...+|+|.+..........+.+|+.+++.++||||+++++++..     
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~-----   75 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVR-----   75 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEec-----
Confidence            3689999999999985321            23588888766555555678899999999999999999998653     


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ....+++|||+++|++..++....
T Consensus        76 ~~~~~lv~e~~~~~~l~~~~~~~~   99 (262)
T cd05077          76 DVENIMVEEFVEFGPLDLFMHRKS   99 (262)
T ss_pred             CCCCEEEEecccCCCHHHHHHhcC
Confidence            567799999999999988876544

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=98.71  E-value=2.7e-08  Score=97.06  Aligned_cols=86  Identities=27%  Similarity=0.439  Sum_probs=71.9

Q ss_pred             ceeecCCceeEEEEEECC-CCc--EEEEEEeecccc-chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGE-TGT--TVAVKVMNLKQK-GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~-~~~--~~avK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|.+.. .++  .||+|.+..... ...+.+.+|+..+++++||||+++++.+.     . ...+++|
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~-~~~~~v~   74 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVL-----T-HPLMMVT   74 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEc-----C-CeEEEEE
Confidence            468999999999999865 333  699999976554 56678999999999999999999998843     3 7889999


Q ss_pred             cccccCCchhhhhccc
Q 042887          130 EYMKCGSSEDWMHQSN  145 (628)
Q Consensus       130 e~~~~g~L~~~l~~~~  145 (628)
                      ||+++|++.+++.+..
T Consensus        75 e~~~~~~L~~~l~~~~   90 (257)
T cd05040          75 ELAPLGSLLDRLRKDA   90 (257)
T ss_pred             EecCCCcHHHHHHhcc
Confidence            9999999999987644

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=98.71  E-value=2.9e-08  Score=100.75  Aligned_cols=84  Identities=23%  Similarity=0.284  Sum_probs=67.8

Q ss_pred             eecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc---CCCCcccccceeeeccccccceeeeee
Q 042887           56 IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV---RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        56 iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l---~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      ||+|+||.||+|++..+++.||+|++....   ......+.+|..++...   .||+|+++++.+     +.....|+||
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~-----~~~~~~~lv~   75 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSF-----QTDSDLYLVT   75 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEE-----ecCCeEEEEE
Confidence            699999999999999999999999996532   22334456677777665   699999999884     4578899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++|++.+++.+.
T Consensus        76 e~~~~g~L~~~l~~~   90 (330)
T cd05586          76 DYMSGGELFWHLQKE   90 (330)
T ss_pred             cCCCCChHHHHHHhc
Confidence            999999999888643

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=98.71  E-value=3.4e-08  Score=98.20  Aligned_cols=91  Identities=21%  Similarity=0.315  Sum_probs=75.3

Q ss_pred             CCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc----cchhhhHHHHHHHHhhc-CCCCcccccceeeecccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~  120 (628)
                      +|++.+.||+|+||.||.|+..   .+|+.||+|++....    ....+.+.+|+.++.++ +|++|+.+++.+     +
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~-----~   75 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAF-----Q   75 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEe-----e
Confidence            4788899999999999999874   478999999987532    23346688899999999 599999998884     4


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .....|+||||++++++.+++...
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~l~~~   99 (290)
T cd05613          76 TDTKLHLILDYINGGELFTHLSQR   99 (290)
T ss_pred             cCCeEEEEEecCCCCcHHHHHHHc
Confidence            467889999999999999988653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.71  E-value=3.1e-08  Score=101.04  Aligned_cols=95  Identities=20%  Similarity=0.329  Sum_probs=77.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecc--------
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSID--------  118 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~--------  118 (628)
                      ..+|++.+.||.|+||.||+|....+|+.||+|.+........+.+.+|+++++.++||||+++++++....        
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            367999999999999999999999999999999997665555677889999999999999999988754311        


Q ss_pred             -ccccceeeeeecccccCCchhhhh
Q 042887          119 -FKGVDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       119 -~~~~~~~~lv~e~~~~g~L~~~l~  142 (628)
                       +......+++|||++ +++.+++.
T Consensus        84 ~~~~~~~~~lv~e~~~-~~L~~~~~  107 (342)
T cd07854          84 SLTELNSVYIVQEYME-TDLANVLE  107 (342)
T ss_pred             cccccceEEEEeeccc-ccHHHHHH
Confidence             112246789999997 58877764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=98.71  E-value=4.4e-08  Score=97.06  Aligned_cols=90  Identities=26%  Similarity=0.517  Sum_probs=75.8

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      |++.+.||+|++|.||+|.+..+|+.||+|++....  ....+.+.+|++++++++|||++++++++.     +....|+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~-----~~~~~~i   75 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVH-----SENKLYL   75 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheec-----cCCeEEE
Confidence            677889999999999999999899999999987543  233467889999999999999999999854     4688999


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      +|||++ +++.+++....
T Consensus        76 v~e~~~-~~l~~~~~~~~   92 (283)
T cd07835          76 VFEFLD-LDLKKYMDSSP   92 (283)
T ss_pred             EEeccC-cCHHHHHhhCC
Confidence            999995 68888876543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=98.71  E-value=3e-08  Score=97.54  Aligned_cols=87  Identities=30%  Similarity=0.553  Sum_probs=71.5

Q ss_pred             ceeecCCceeEEEEEECCCCc--EEEEEEeecc-ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGT--TVAVKVMNLK-QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~--~~avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|+...++.  .+|+|..... .....+.+.+|++++.++ +||||+++++.+.     .....+++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~-----~~~~~~lv~   75 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACE-----HRGYLYLAI   75 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEe-----cCCCceEEE
Confidence            368999999999999987775  4688887643 234456788999999999 7999999999864     366789999


Q ss_pred             cccccCCchhhhhccc
Q 042887          130 EYMKCGSSEDWMHQSN  145 (628)
Q Consensus       130 e~~~~g~L~~~l~~~~  145 (628)
                      ||+++|+|.+++....
T Consensus        76 e~~~~~~L~~~i~~~~   91 (270)
T cd05047          76 EYAPHGNLLDFLRKSR   91 (270)
T ss_pred             EeCCCCcHHHHHHhcc
Confidence            9999999999987543

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=98.70  E-value=1.9e-08  Score=98.30  Aligned_cols=90  Identities=27%  Similarity=0.460  Sum_probs=73.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|.+..+ ..+|+|.+.... ...+.+.+|+.+++.++|||++++++.+.      ....+
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~-~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~~~~   76 (260)
T cd05069           5 RESLRLDVKLGQGCFGEVWMGTWNGT-TKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVS------EEPIY   76 (260)
T ss_pred             hHHeeeeeeecCcCCCeEEEEEEcCC-ceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEc------CCCcE
Confidence            45688999999999999999998544 569999876433 23467889999999999999999987742      35678


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||+++|++.+++...
T Consensus        77 ~v~e~~~~~~L~~~~~~~   94 (260)
T cd05069          77 IVTEFMGKGSLLDFLKEG   94 (260)
T ss_pred             EEEEcCCCCCHHHHHhhC
Confidence            999999999999998653

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=98.70  E-value=3.3e-08  Score=98.51  Aligned_cols=94  Identities=22%  Similarity=0.445  Sum_probs=77.1

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|.+..+++.+|+|.++...  ......+.+|+.++++++||||+++++++..   ......
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~---~~~~~~   81 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVG---SNLDKI   81 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEe---cCCCcE
Confidence            57899999999999999999999899999999997543  2233457889999999999999999998653   123789


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      |+|+||+.+ ++.+++....
T Consensus        82 ~lv~e~~~~-~L~~~~~~~~  100 (293)
T cd07843          82 YMVMEYVEH-DLKSLMETMK  100 (293)
T ss_pred             EEEehhcCc-CHHHHHHhcc
Confidence            999999984 8888876544

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=98.70  E-value=3.6e-08  Score=96.47  Aligned_cols=84  Identities=21%  Similarity=0.337  Sum_probs=72.6

Q ss_pred             eecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           56 IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        56 iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      ||.|+||.||+|++..+++.||+|.+....   ....+.+.+|+.+++.++||||+++++.+.     .....++++||+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~lv~e~~   75 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFK-----DKKYIYMLMEYC   75 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEE-----cCCccEEEEecC
Confidence            699999999999998889999999997542   234567899999999999999999999854     477899999999


Q ss_pred             ccCCchhhhhcc
Q 042887          133 KCGSSEDWMHQS  144 (628)
Q Consensus       133 ~~g~L~~~l~~~  144 (628)
                      ++++|.+++.+.
T Consensus        76 ~~~~L~~~l~~~   87 (262)
T cd05572          76 LGGELWTILRDR   87 (262)
T ss_pred             CCCcHHHHHhhc
Confidence            999999998654

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.70  E-value=2.3e-08  Score=97.63  Aligned_cols=85  Identities=28%  Similarity=0.585  Sum_probs=69.7

Q ss_pred             ceeecCCceeEEEEEECCCC----------cEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           54 NMIGQGSFGFVYKGKLGETG----------TTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~----------~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      +.||+|+||.||+|.+..++          ..+++|........ ...+.+|+.++++++||||+++++.+.     . .
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~-~   73 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCV-----R-D   73 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEe-----c-C
Confidence            46899999999999997666          34777876544332 678899999999999999999999864     2 5


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..++||||+++|+|.+++....
T Consensus        74 ~~~lv~e~~~~~~L~~~l~~~~   95 (259)
T cd05037          74 ENIMVEEYVKFGPLDVFLHREK   95 (259)
T ss_pred             CcEEEEEcCCCCcHHHHHHhhc
Confidence            6789999999999999987654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=98.70  E-value=3.6e-08  Score=96.24  Aligned_cols=86  Identities=34%  Similarity=0.616  Sum_probs=74.1

Q ss_pred             ceeecCCceeEEEEEECCC---CcEEEEEEeeccccc-hhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGET---GTTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|.....   +..||+|.+...... ..+.+.+|++.++.++|+||+++++++.     .....+++|
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~-----~~~~~~lv~   75 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCT-----EEEPLYLVL   75 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeec-----CCCceEEEE
Confidence            4699999999999999765   889999999765432 3678899999999999999999999854     478899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||++++++.+++...
T Consensus        76 e~~~~~~L~~~l~~~   90 (262)
T cd00192          76 EYMEGGDLLDYLRKS   90 (262)
T ss_pred             EeccCCcHHHHHhhc
Confidence            999999999998765

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=98.70  E-value=3.3e-08  Score=96.80  Aligned_cols=84  Identities=24%  Similarity=0.382  Sum_probs=72.4

Q ss_pred             eecCCceeEEEEEECCCCcEEEEEEeecccc---chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           56 IGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        56 iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      ||+|+||.||+|++..+|+.+|+|.+.....   ...+.+.+|++++++++||||+++++.+     ......|+++||+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~-----~~~~~~~lv~e~~   75 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSF-----QGKKNLYLVMEYL   75 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHhe-----ecCcEEEEEEecC
Confidence            6899999999999988899999999865432   3456788999999999999999999884     4578899999999


Q ss_pred             ccCCchhhhhcc
Q 042887          133 KCGSSEDWMHQS  144 (628)
Q Consensus       133 ~~g~L~~~l~~~  144 (628)
                      +++++.+++.+.
T Consensus        76 ~~~~L~~~l~~~   87 (265)
T cd05579          76 PGGDLASLLENV   87 (265)
T ss_pred             CCCcHHHHHHHc
Confidence            999999988654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=98.70  E-value=4.8e-08  Score=94.71  Aligned_cols=91  Identities=30%  Similarity=0.474  Sum_probs=79.8

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      +|+..+.||+|+||.||+|.+..+++.+++|............+.+|++.++.++|++|+++++.+.     .....+++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~~l~   75 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYL-----KKDELWIV   75 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEe-----cCCeEEEE
Confidence            4788899999999999999998889999999997655445678999999999999999999999854     36788999


Q ss_pred             ecccccCCchhhhhcc
Q 042887          129 YEYMKCGSSEDWMHQS  144 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~  144 (628)
                      +||++++++.+++...
T Consensus        76 ~e~~~~~~L~~~~~~~   91 (253)
T cd05122          76 MEFCSGGSLKDLLKST   91 (253)
T ss_pred             EecCCCCcHHHHHhhc
Confidence            9999999999988664

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=98.69  E-value=3.1e-08  Score=99.19  Aligned_cols=93  Identities=28%  Similarity=0.528  Sum_probs=74.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCc----EEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGT----TVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~----~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .++|+..+.||+|+||.||+|.+..+|+    .||+|.+.... ......+.+|+.+++.++||||+++++.+..     
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~-----   80 (303)
T cd05110           6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS-----   80 (303)
T ss_pred             hhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcC-----
Confidence            3568888999999999999999877776    46888876543 2233468899999999999999999998642     


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       ...++++||+++|++.+++....
T Consensus        81 -~~~~~v~e~~~~g~l~~~~~~~~  103 (303)
T cd05110          81 -PTIQLVTQLMPHGCLLDYVHEHK  103 (303)
T ss_pred             -CCceeeehhcCCCCHHHHHHhcc
Confidence             34678999999999999987654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=98.69  E-value=4.9e-08  Score=96.85  Aligned_cols=91  Identities=26%  Similarity=0.526  Sum_probs=75.8

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      |++.+.||+|+||.||+|.+..+|+.+|+|.+....  ......+.+|+++++.++|||++++++++..   ...+..++
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---~~~~~~~l   77 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTS---KGKGSIYM   77 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEec---CCCCcEEE
Confidence            677889999999999999998889999999997653  3345678899999999999999999998654   11378999


Q ss_pred             eecccccCCchhhhhcc
Q 042887          128 IYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~  144 (628)
                      |+||+++ ++.+++...
T Consensus        78 v~e~~~~-~l~~~~~~~   93 (287)
T cd07840          78 VFEYMDH-DLTGLLDSP   93 (287)
T ss_pred             Eeccccc-cHHHHHhcc
Confidence            9999985 888877654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=98.69  E-value=3.3e-08  Score=100.17  Aligned_cols=94  Identities=23%  Similarity=0.312  Sum_probs=76.7

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|.+...  .....+.+.+|+++++.++||||+++.+++..    ..
T Consensus         7 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~----~~   82 (328)
T cd07856           7 EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFIS----PL   82 (328)
T ss_pred             ccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEec----CC
Confidence            3567899999999999999999999999999999988643  22345678899999999999999999988532    24


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...++++||+ ++++.+++..
T Consensus        83 ~~~~lv~e~~-~~~L~~~~~~  102 (328)
T cd07856          83 EDIYFVTELL-GTDLHRLLTS  102 (328)
T ss_pred             CcEEEEeehh-ccCHHHHHhc
Confidence            5688999998 4678777653

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=98.69  E-value=4.9e-08  Score=100.10  Aligned_cols=97  Identities=22%  Similarity=0.266  Sum_probs=77.6

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeee-ccccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSS-IDFKG  121 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-~~~~~  121 (628)
                      ...++|+..+.||+|+||.||+|.+..+|+.||+|.+...  .......+.+|+.+++.++||||+++++++.. ..+.+
T Consensus        13 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   92 (353)
T cd07850          13 TVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEE   92 (353)
T ss_pred             hhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccc
Confidence            3457899999999999999999999999999999998643  23344667899999999999999999988653 11233


Q ss_pred             cceeeeeecccccCCchhhhh
Q 042887          122 VDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~  142 (628)
                      ....|+||||+.+ ++.+.+.
T Consensus        93 ~~~~~lv~e~~~~-~l~~~~~  112 (353)
T cd07850          93 FQDVYLVMELMDA-NLCQVIQ  112 (353)
T ss_pred             cCcEEEEEeccCC-CHHHHHh
Confidence            4567999999974 7777664

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=98.69  E-value=4.8e-08  Score=96.87  Aligned_cols=90  Identities=23%  Similarity=0.332  Sum_probs=76.8

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      .|...+.||+|++|.||+|.+..+++.+|+|.+........+.+.+|+.+++.+.||||+++++.+.     .....+++
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~-----~~~~~~~v   94 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYL-----VGDELWVV   94 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEE-----cCCeEEEE
Confidence            3444578999999999999998899999999987654445567889999999999999999999843     46788999


Q ss_pred             ecccccCCchhhhhc
Q 042887          129 YEYMKCGSSEDWMHQ  143 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~  143 (628)
                      +||++++++.+++..
T Consensus        95 ~e~~~~~~L~~~~~~  109 (285)
T cd06648          95 MEFLEGGALTDIVTH  109 (285)
T ss_pred             EeccCCCCHHHHHHh
Confidence            999999999998865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=98.68  E-value=2.3e-08  Score=97.28  Aligned_cols=88  Identities=26%  Similarity=0.521  Sum_probs=73.7

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      ++|++.+.||+|+||.||+|..  +++.||+|..+...  ..+.+.+|+.++++++||||+++++.+.      ....++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~--~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~------~~~~~~   75 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY--TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVIL------HNGLYI   75 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc--CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEc------CCCcEE
Confidence            5688999999999999999976  78889999986432  3457889999999999999999998854      234689


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      +|||+++|++.+++....
T Consensus        76 v~e~~~~~~L~~~l~~~~   93 (254)
T cd05083          76 VMELMSKGNLVNFLRTRG   93 (254)
T ss_pred             EEECCCCCCHHHHHHhcC
Confidence            999999999999986543

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>PHA03211 serine/threonine kinase US3; Provisional

Probab=98.68  E-value=4.3e-08  Score=103.00  Aligned_cols=85  Identities=18%  Similarity=0.219  Sum_probs=72.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      .+|.+.+.||+|+||.||+|.+..+++.||+|...      ...+.+|++++++++|+|||++++++..     .+..++
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~-----~~~~~l  237 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVV-----GGLTCL  237 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEE-----CCEEEE
Confidence            46999999999999999999999999999999632      2346789999999999999999998653     678899


Q ss_pred             eecccccCCchhhhhcc
Q 042887          128 IYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~  144 (628)
                      +||++. +++.+++...
T Consensus       238 v~e~~~-~~L~~~l~~~  253 (461)
T PHA03211        238 VLPKYR-SDLYTYLGAR  253 (461)
T ss_pred             EEEccC-CCHHHHHHhc
Confidence            999995 6888887654

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=98.68  E-value=4.7e-08  Score=98.58  Aligned_cols=92  Identities=26%  Similarity=0.333  Sum_probs=75.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      +.|+..+.||+|+||.||+|++..+++.||+|.+....   ......+.+|+++++.++|||++++++++.+     ...
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~   99 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLR-----EHT   99 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-----CCe
Confidence            45788889999999999999998899999999987542   2234568899999999999999999998643     678


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .++||||+.+ ++.+.+....
T Consensus       100 ~~lv~e~~~g-~l~~~~~~~~  119 (317)
T cd06635         100 AWLVMEYCLG-SASDLLEVHK  119 (317)
T ss_pred             EEEEEeCCCC-CHHHHHHHhc
Confidence            8999999974 7777665433

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=98.68  E-value=4.9e-08  Score=98.43  Aligned_cols=90  Identities=22%  Similarity=0.417  Sum_probs=74.2

Q ss_pred             CCCcCceeecCCceeEEEEEECC--CCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGE--TGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~--~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      +|++.+.||+|+||.||+|.+..  +++.||+|.+....   ....+.+.+|+.++++++||||+++++.+.+   ....
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~   77 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLE---HADK   77 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeC---CCCc
Confidence            47888999999999999999988  78999999997632   3445678899999999999999999998654   2237


Q ss_pred             eeeeeecccccCCchhhhh
Q 042887          124 FKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~  142 (628)
                      ..++||||+++ ++.+.+.
T Consensus        78 ~~~lv~e~~~~-~l~~~~~   95 (316)
T cd07842          78 SVYLLFDYAEH-DLWQIIK   95 (316)
T ss_pred             eEEEEEeCCCc-CHHHHHH
Confidence            89999999975 5666554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=98.68  E-value=6e-08  Score=99.01  Aligned_cols=100  Identities=20%  Similarity=0.265  Sum_probs=78.5

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeec-c
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSI-D  118 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~  118 (628)
                      +.....++|++.+.||+|+||.||+|.+..+|+.||+|.+....  ....+.+.+|+.++++++||||+++++++... .
T Consensus        11 ~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~   90 (345)
T cd07877          11 TIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARS   90 (345)
T ss_pred             HHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeeccc
Confidence            34456788999999999999999999998899999999987532  22346688999999999999999999886542 1


Q ss_pred             ccccceeeeeecccccCCchhhhh
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~  142 (628)
                      +......|++++++ ++++.+++.
T Consensus        91 ~~~~~~~~lv~~~~-~~~L~~~~~  113 (345)
T cd07877          91 LEEFNDVYLVTHLM-GADLNNIVK  113 (345)
T ss_pred             ccccccEEEEehhc-ccCHHHHHh
Confidence            22334578888876 678877664

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=98.68  E-value=4.1e-08  Score=95.73  Aligned_cols=84  Identities=21%  Similarity=0.474  Sum_probs=68.9

Q ss_pred             eeecCCceeEEEEEE--CCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeec
Q 042887           55 MIGQGSFGFVYKGKL--GETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        55 ~iG~G~~g~V~~~~~--~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      .||+|+||.||+|.+  ..+++.+|+|+++...  ....+.+.+|+.+++.++||||+++++.+.      ....++|||
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~------~~~~~lv~e   75 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE------AESWMLVME   75 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc------CCCcEEEEe
Confidence            589999999999975  3567889999986543  234567899999999999999999998753      345689999


Q ss_pred             ccccCCchhhhhcc
Q 042887          131 YMKCGSSEDWMHQS  144 (628)
Q Consensus       131 ~~~~g~L~~~l~~~  144 (628)
                      |+++|++.+++...
T Consensus        76 ~~~~~~L~~~l~~~   89 (257)
T cd05116          76 LAELGPLNKFLQKN   89 (257)
T ss_pred             cCCCCcHHHHHHhc
Confidence            99999999988643

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=98.67  E-value=6.3e-08  Score=97.31  Aligned_cols=98  Identities=21%  Similarity=0.396  Sum_probs=76.5

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc---cc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID---FK  120 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~---~~  120 (628)
                      ..++|++.+.||+|+||.||+|....+++.||+|.+....  ......+.+|+.++++++||||+++++++....   ..
T Consensus        10 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (310)
T cd07865          10 EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNR   89 (310)
T ss_pred             hhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence            3467999999999999999999999999999999986532  222345678999999999999999999876421   11


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .....++||||+.+ ++.+++...
T Consensus        90 ~~~~~~lv~e~~~~-~l~~~l~~~  112 (310)
T cd07865          90 YKGSFYLVFEFCEH-DLAGLLSNK  112 (310)
T ss_pred             CCceEEEEEcCCCc-CHHHHHHhc
Confidence            23467999999974 777776543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=98.67  E-value=3.9e-08  Score=99.70  Aligned_cols=86  Identities=26%  Similarity=0.359  Sum_probs=72.0

Q ss_pred             ceeecC--CceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQG--SFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G--~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      ..||+|  +||.||+|++..+|+.||+|++....  ....+.+.+|+.+++.++||||+++++++.     .....++++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~-----~~~~~~~v~   78 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFT-----TGSWLWVIS   78 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEe-----cCCceEEEE
Confidence            356666  89999999999999999999987543  233467889999999999999999999954     477889999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+.+|++.+++.+.
T Consensus        79 e~~~~~~l~~~l~~~   93 (328)
T cd08226          79 PFMAYGSANSLLKTY   93 (328)
T ss_pred             ecccCCCHHHHHHhh
Confidence            999999999888654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=98.67  E-value=5e-08  Score=95.82  Aligned_cols=90  Identities=18%  Similarity=0.366  Sum_probs=73.0

Q ss_pred             CCCcCceeecCCceeEEEEEECC-CCcEEEEEEeeccc----------cchhhhHHHHHHHHhh-cCCCCcccccceeee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGE-TGTTVAVKVMNLKQ----------KGAAKSFVTECEALSN-VRHRNLIKIITVCSS  116 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~-~~~~~avK~~~~~~----------~~~~~~~~~E~~~l~~-l~h~nIv~l~~~~~~  116 (628)
                      +|++.+.||+|+||.||+|.+.. .++.+|+|.+....          .....++.+|+.++.+ ++||||+++++.+. 
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~-   79 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFL-   79 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEc-
Confidence            47888999999999999999977 67889999885421          1233557788888765 68999999999854 


Q ss_pred             ccccccceeeeeecccccCCchhhhhc
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                          ..+..+++|||++++++.+++..
T Consensus        80 ----~~~~~~lv~e~~~~~~l~~~l~~  102 (269)
T cd08528          80 ----ENDRLYIVMDLIEGAPLGEHFNS  102 (269)
T ss_pred             ----cCCeEEEEEecCCCCcHHHHHHH
Confidence                47889999999999999888743

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.67  E-value=1.2e-08  Score=95.26  Aligned_cols=96  Identities=22%  Similarity=0.314  Sum_probs=78.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCC----cEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETG----TTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~----~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      -..|+....||+|.||.||+|...+++    +.+|+|.++..+  .+.....+||+..+++++|||||.+..++.+    
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~----   98 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLS----   98 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhc----
Confidence            357999999999999999999776554    368999987543  3556678999999999999999999998643    


Q ss_pred             ccceeeeeecccccCCchhhhhccccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      .+...++++||.+. ||.+.|+-++..
T Consensus        99 ~d~~v~l~fdYAEh-DL~~II~fHr~~  124 (438)
T KOG0666|consen   99 HDKKVWLLFDYAEH-DLWHIIKFHRAS  124 (438)
T ss_pred             cCceEEEEehhhhh-hHHHHHHHhccc
Confidence            27889999999985 888888766543

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.66  E-value=7.3e-09  Score=100.03  Aligned_cols=100  Identities=20%  Similarity=0.279  Sum_probs=82.5

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDF  119 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~  119 (628)
                      .....+|....+||+|+||+|.+|..+.+.+.||||++++.   ...+.+--+.|.++|+-- +-|.+++++.+     |
T Consensus       345 ~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHSc-----F  419 (683)
T KOG0696|consen  345 RIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSC-----F  419 (683)
T ss_pred             ceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHH-----h
Confidence            44456799999999999999999999999999999999764   234445556777777755 47889999988     7


Q ss_pred             cccceeeeeecccccCCchhhhhcccccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      ++.++.|+||||+.||+|-.+|.+.++..
T Consensus       420 QTmDRLyFVMEyvnGGDLMyhiQQ~GkFK  448 (683)
T KOG0696|consen  420 QTMDRLYFVMEYVNGGDLMYHIQQVGKFK  448 (683)
T ss_pred             hhhhheeeEEEEecCchhhhHHHHhcccC
Confidence            88999999999999999999988776544

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=98.66  E-value=4.9e-08  Score=95.47  Aligned_cols=88  Identities=25%  Similarity=0.502  Sum_probs=70.1

Q ss_pred             ceeecCCceeEEEEEECC---CCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGE---TGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~---~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|.+..   .+..||+|.+... .....+.+.+|+.+++.++||||+++++.+..    .....+++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~~lv~   76 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLP----SEGSPLVVL   76 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeec----CCCCcEEEE
Confidence            468999999999998753   3457999988543 23445778899999999999999999987642    345678999


Q ss_pred             cccccCCchhhhhccc
Q 042887          130 EYMKCGSSEDWMHQSN  145 (628)
Q Consensus       130 e~~~~g~L~~~l~~~~  145 (628)
                      ||+.+|++.+++....
T Consensus        77 e~~~~~~L~~~~~~~~   92 (262)
T cd05058          77 PYMKHGDLRNFIRSET   92 (262)
T ss_pred             ecCCCCCHHHHHHhcC
Confidence            9999999999986543

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=98.66  E-value=4.9e-08  Score=95.84  Aligned_cols=85  Identities=21%  Similarity=0.395  Sum_probs=67.6

Q ss_pred             eeecCCceeEEEEEECCCC--cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeecc
Q 042887           55 MIGQGSFGFVYKGKLGETG--TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEY  131 (628)
Q Consensus        55 ~iG~G~~g~V~~~~~~~~~--~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~  131 (628)
                      .||+|+||.||+|+...++  ..+++|...... ....+.+.+|+.+++.++||||+++++.+.+     ....++||||
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~-----~~~~~lv~e~   76 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVE-----AIPYLLVFEY   76 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecC-----CCccEEEEec
Confidence            5999999999999864332  345666665432 2345689999999999999999999998653     6678999999


Q ss_pred             cccCCchhhhhcc
Q 042887          132 MKCGSSEDWMHQS  144 (628)
Q Consensus       132 ~~~g~L~~~l~~~  144 (628)
                      +++|+|.+++.+.
T Consensus        77 ~~~~~L~~~l~~~   89 (268)
T cd05086          77 CELGDLKSYLSQE   89 (268)
T ss_pred             CCCCcHHHHHHhh
Confidence            9999999998754

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=98.66  E-value=5.3e-08  Score=99.10  Aligned_cols=91  Identities=20%  Similarity=0.366  Sum_probs=73.3

Q ss_pred             hCCCCc-CceeecCCceeEEEEEECCCCcEEEEEEeeccccch--------------hhhHHHHHHHHhhcCCCCccccc
Q 042887           47 TNNFSA-SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA--------------AKSFVTECEALSNVRHRNLIKII  111 (628)
Q Consensus        47 ~~~~~~-~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~--------------~~~~~~E~~~l~~l~h~nIv~l~  111 (628)
                      .++|.. .+.||+|+||.||+|.+..+++.||+|.+.......              ...+.+|+++++.++||||++++
T Consensus         7 ~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   86 (335)
T PTZ00024          7 SERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLV   86 (335)
T ss_pred             ccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeee
Confidence            355654 577999999999999998899999999986532111              12578999999999999999999


Q ss_pred             ceeeeccccccceeeeeecccccCCchhhhhc
Q 042887          112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       112 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      +++.     .....+++|||+. |++.+++..
T Consensus        87 ~~~~-----~~~~~~lv~e~~~-~~l~~~l~~  112 (335)
T PTZ00024         87 DVYV-----EGDFINLVMDIMA-SDLKKVVDR  112 (335)
T ss_pred             EEEe-----cCCcEEEEEeccc-cCHHHHHHh
Confidence            9854     4678999999997 588888754

>PRK10345 hypothetical protein; Provisional

Probab=98.66  E-value=5.9e-08  Score=90.04  Aligned_cols=89  Identities=13%  Similarity=0.233  Sum_probs=67.7

Q ss_pred             CcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-----CCCCcccccceeeeccccccce-
Q 042887           51 SASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-----RHRNLIKIITVCSSIDFKGVDF-  124 (628)
Q Consensus        51 ~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-----~h~nIv~l~~~~~~~~~~~~~~-  124 (628)
                      .-.+.||+|+||.||.  ++.++.. +||++........+.+.+|+.+++.+     .||||+++++++...  ..... 
T Consensus         5 ~~~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~--~g~g~v   79 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETD--CGTGYV   79 (210)
T ss_pred             CCcceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeC--CCCeEE
Confidence            3457899999999995  7777665 69988765444557799999999999     579999999985431  11124 


Q ss_pred             eeeeecc--cccCCchhhhhcc
Q 042887          125 KALIYEY--MKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~--~~~g~L~~~l~~~  144 (628)
                      +.+|+||  +.+|+|.+++.+.
T Consensus        80 ~~~I~e~~G~~~~tL~~~l~~~  101 (210)
T PRK10345         80 YDVIADFDGKPSITLTEFAEQC  101 (210)
T ss_pred             EEEEecCCCCcchhHHHHHHcc
Confidence            4478999  6689999999653

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=98.66  E-value=2.7e-08  Score=98.55  Aligned_cols=93  Identities=23%  Similarity=0.365  Sum_probs=75.7

Q ss_pred             CCCCcCceeecCCceeEEEEEECCC-----CcEEEEEEeecccc-chhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGET-----GTTVAVKVMNLKQK-GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~-----~~~~avK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .+|++.+.||+|+||.||+|.+..+     ++.||+|+++.... ...+.+.+|+.++..++||||+++++++.     .
T Consensus         5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~-----~   79 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVT-----K   79 (283)
T ss_pred             HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-----C
Confidence            3577788999999999999987543     47799999975432 33466889999999999999999999854     3


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ....++++||++++++.+++....
T Consensus        80 ~~~~~~~~e~~~~~~l~~~l~~~~  103 (283)
T cd05091          80 EQPLSMIFSYCSHSDLHEFLVMRS  103 (283)
T ss_pred             CCceEEEEEcCCCCcHHHHHHhcC
Confidence            667899999999999999986443

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=98.65  E-value=5.7e-08  Score=98.75  Aligned_cols=96  Identities=20%  Similarity=0.299  Sum_probs=77.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|....+|+.||+|.+....  ......+.+|+.+++.++||||+++++++.... .....
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~~~   82 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPG-ADFKD   82 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccC-CCCce
Confidence            368999999999999999999999999999999987542  234567788999999999999999998754311 23457


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||+. |++.+++...
T Consensus        83 ~~lv~e~~~-~~l~~~~~~~  101 (334)
T cd07855          83 VYVVMDLME-SDLHHIIHSD  101 (334)
T ss_pred             EEEEEehhh-hhHHHHhccC
Confidence            899999996 5888877543

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=98.65  E-value=2.6e-08  Score=97.82  Aligned_cols=86  Identities=30%  Similarity=0.524  Sum_probs=70.9

Q ss_pred             ceeecCCceeEEEEEECCCC------cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           54 NMIGQGSFGFVYKGKLGETG------TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~------~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +.||+|+||.||+|++....      +.+|+|.+.... ......+.+|+.+++.++||||+++++.+.     .....+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~   75 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCL-----LNEPQY   75 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeec-----CCCCeE
Confidence            36899999999999986433      679999886542 234567899999999999999999999854     366789


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||+++|++.+++.+.
T Consensus        76 ~v~e~~~~~~L~~~l~~~   93 (269)
T cd05044          76 IIMELMEGGDLLSYLRDA   93 (269)
T ss_pred             EEEeccCCCcHHHHHHHh
Confidence            999999999999999754

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=8e-10  Score=99.76  Aligned_cols=97  Identities=22%  Similarity=0.441  Sum_probs=76.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec---cccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI---DFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~---~~~~  121 (628)
                      ...|+-...||+|.||.||+|+.+.+|+.||+|++-..  ..+-.....+|++++..++|+|++.+++.|...   ....
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~   95 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRD   95 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccc
Confidence            34577778899999999999999999999999877432  334455678999999999999999999999762   2223


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...+|+||++|+. +|...+...
T Consensus        96 r~t~ylVf~~ceh-DLaGlLsn~  117 (376)
T KOG0669|consen   96 RATFYLVFDFCEH-DLAGLLSNR  117 (376)
T ss_pred             cceeeeeHHHhhh-hHHHHhcCc
Confidence            4569999999985 777666544

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=98.65  E-value=4.5e-08  Score=95.64  Aligned_cols=90  Identities=21%  Similarity=0.248  Sum_probs=73.3

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      +|.+.+.||+|+||.||++.+...+..+++|..+...     ......+.+|+.++++++||||+++++.+     ....
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----~~~~   75 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASF-----LERD   75 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHH-----hcCC
Confidence            4788899999999999999998777777777765421     22344577899999999999999999984     4467


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..++++||++++++.+++.+
T Consensus        76 ~~~lv~e~~~~~~l~~~~~~   95 (260)
T cd08222          76 AFCIITEYCEGRDLDCKLEE   95 (260)
T ss_pred             ceEEEEEeCCCCCHHHHHHH
Confidence            78999999999999988864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=98.64  E-value=9.1e-09  Score=100.74  Aligned_cols=95  Identities=21%  Similarity=0.331  Sum_probs=82.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .+.|..-++||+|+||.||.++.+.+|+.||+|.+.+..   +........|..++.++..+.||.+..+     |++.+
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYA-----feTkd  258 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYA-----FETKD  258 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeee-----ecCCC
Confidence            456788899999999999999999999999999986542   3445567889999999999999998877     77899


Q ss_pred             eeeeeecccccCCchhhhhcccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ..++|+..|.||||..+|...+.
T Consensus       259 ~LClVLtlMNGGDLkfHiyn~g~  281 (591)
T KOG0986|consen  259 ALCLVLTLMNGGDLKFHIYNHGN  281 (591)
T ss_pred             ceEEEEEeecCCceeEEeeccCC
Confidence            99999999999999999877663

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=98.63  E-value=1.1e-08  Score=93.56  Aligned_cols=93  Identities=22%  Similarity=0.382  Sum_probs=79.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----c---chhhhHHHHHHHHhhcC-CCCcccccceeeec
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----K---GAAKSFVTECEALSNVR-HRNLIKIITVCSSI  117 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~---~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~  117 (628)
                      ..+|...+.+|.|.-+.|.++.++++|+.+|+|++....     +   .-.+.-.+|+++|+++. ||+|+++.+.    
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~----   91 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDV----   91 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeee----
Confidence            467888999999999999999999999999999996532     1   12345678999999995 9999999999    


Q ss_pred             cccccceeeeeecccccCCchhhhhcc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                       +++..++++|+|.|+.|+|.+++...
T Consensus        92 -yes~sF~FlVFdl~prGELFDyLts~  117 (411)
T KOG0599|consen   92 -YESDAFVFLVFDLMPRGELFDYLTSK  117 (411)
T ss_pred             -ccCcchhhhhhhhcccchHHHHhhhh
Confidence             67799999999999999999999654

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=98.63  E-value=5.6e-08  Score=98.97  Aligned_cols=94  Identities=21%  Similarity=0.327  Sum_probs=76.5

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhc-CCCCcccccceeeecccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..++|++.+.||+|+||.||+|.+..+|+.+|+|.+...  .......+.+|+.+++++ +||||+++++++..   ...
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~---~~~   81 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKA---END   81 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeecc---CCC
Confidence            456799999999999999999999888999999988542  223345678899999999 99999999998642   234


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...|+||||++ +++.+++..
T Consensus        82 ~~~~lv~e~~~-~~L~~~~~~  101 (337)
T cd07852          82 KDIYLVFEYME-TDLHAVIRA  101 (337)
T ss_pred             ceEEEEecccc-cCHHHHHhc
Confidence            56899999998 588887754

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=98.62  E-value=8.1e-08  Score=95.14  Aligned_cols=90  Identities=29%  Similarity=0.432  Sum_probs=73.9

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-chhhhHHHHHHHHhhcC-CCCcccccceeeeccccccceeee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-GAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      |++.+.||+|+||.||+|....+++.||+|.+..... .......+|+..+++++ ||||+++++.+     ......++
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~-----~~~~~~~l   75 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVF-----RENDELYF   75 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHh-----hcCCcEEE
Confidence            6778899999999999999988899999999865422 22334567999999999 99999999985     44788999


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      ||||+ +|++.+++....
T Consensus        76 v~e~~-~~~l~~~~~~~~   92 (283)
T cd07830          76 VFEYM-EGNLYQLMKDRK   92 (283)
T ss_pred             EEecC-CCCHHHHHHhcc
Confidence            99999 788988876543

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=98.60  E-value=8.8e-08  Score=95.16  Aligned_cols=91  Identities=24%  Similarity=0.309  Sum_probs=74.5

Q ss_pred             CCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc----cchhhhHHHHHHHHhhc-CCCCcccccceeeecccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~  120 (628)
                      +|++.+.||+|+||.||+|+..   .+++.||+|+++...    ....+.+.+|+.++.++ .||+|+++++.+     .
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~-----~   75 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAF-----Q   75 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheee-----e
Confidence            4778899999999999999864   457889999987532    23445688999999999 599999999884     4


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .....++||||+++|++.+++...
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~~~~~   99 (288)
T cd05583          76 TDTKLHLILDYVNGGELFTHLYQR   99 (288)
T ss_pred             cCCEEEEEEecCCCCcHHHHHhhc
Confidence            577899999999999999888643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=98.60  E-value=8.4e-08  Score=97.39  Aligned_cols=95  Identities=21%  Similarity=0.297  Sum_probs=77.3

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +|++.+.||+|+||.||+|++..+++.||+|.+....  ....+.+.+|+.+++.++|+||+++.+++...........|
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            4788899999999999999998889999999987643  34456789999999999999999999986542212334789


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||+++ ++.+++...
T Consensus        81 lv~e~~~~-~l~~~l~~~   97 (330)
T cd07834          81 IVTELMET-DLHKVIKSP   97 (330)
T ss_pred             EEecchhh-hHHHHHhCC
Confidence            99999984 788877643

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=2.2e-08  Score=109.55  Aligned_cols=72  Identities=24%  Similarity=0.403  Sum_probs=62.8

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeee
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSS  116 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~  116 (628)
                      .-..+|+..+.+|+||||.||+++.+-+|+.||||++... +...-..+.||+..++++.|||||+++.++.+
T Consensus       476 RY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVE  548 (1351)
T KOG1035|consen  476 RYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVE  548 (1351)
T ss_pred             hHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhc
Confidence            3456788899999999999999999999999999999765 33445678899999999999999999999764

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=98.59  E-value=1.7e-07  Score=94.24  Aligned_cols=89  Identities=29%  Similarity=0.388  Sum_probs=73.1

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      |...+.||+|+||.||+|....+|+.||+|.+....   ....+.+.+|+++++.++|||++++++++.+     ....|
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~   97 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLK-----EHTAW   97 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCEEE
Confidence            666678999999999999998899999999986532   2234568899999999999999999998643     67889


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +||||+. |++.+++...
T Consensus        98 lv~e~~~-~~l~~~l~~~  114 (313)
T cd06633          98 LVMEYCL-GSASDLLEVH  114 (313)
T ss_pred             EEEecCC-CCHHHHHHhc
Confidence            9999996 5677666543

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=98.59  E-value=1.1e-07  Score=94.18  Aligned_cols=91  Identities=24%  Similarity=0.341  Sum_probs=71.9

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccceeee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      |++.+.||+|+||.||+|.+..+++.||+|.++... ........+|+.++.++. |+||+++++++.+   ...+..++
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~---~~~~~~~l   77 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFD---RKTGRLAL   77 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEec---CCCCcEEE
Confidence            677889999999999999999899999999986542 222234568999999885 9999999998653   12267899


Q ss_pred             eecccccCCchhhhhcc
Q 042887          128 IYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~  144 (628)
                      ||||++ |++.+++...
T Consensus        78 v~e~~~-~~l~~~l~~~   93 (282)
T cd07831          78 VFELMD-MNLYELIKGR   93 (282)
T ss_pred             EEecCC-ccHHHHHHhc
Confidence            999997 4777777653

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=98.59  E-value=1e-07  Score=93.78  Aligned_cols=94  Identities=27%  Similarity=0.457  Sum_probs=72.4

Q ss_pred             CCcCceeecCCceeEEEEEECC---CCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeecccc-ccc
Q 042887           50 FSASNMIGQGSFGFVYKGKLGE---TGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK-GVD  123 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~---~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~-~~~  123 (628)
                      |.+.+.||+|+||.||+|.+..   +++.||+|.+...  .....+++.+|+.+++.++||||+++++.+...... ...
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            5677899999999999998653   4688999998653  233456788999999999999999999986531111 112


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..++++||+++|++.+++..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~  100 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLM  100 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHH
Confidence            45788999999999888753

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.58  E-value=2.7e-09  Score=87.35  Aligned_cols=85  Identities=25%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             cCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEe
Q 042887          485 LRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLN  564 (628)
Q Consensus       485 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  564 (628)
                      ...|+..+|++|.+....+..-...+.++.|+|++|.|+ .+|..+..++.|+.|+++.|++. ..|+.+..+.+|-.||
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            344444555555555322222223345555555555555 34444555555555555555555 4445444455555555


Q ss_pred             ccCCcCc
Q 042887          565 LSYNHFE  571 (628)
Q Consensus       565 ls~N~l~  571 (628)
                      ..+|.+.
T Consensus       130 s~~na~~  136 (177)
T KOG4579|consen  130 SPENARA  136 (177)
T ss_pred             CCCCccc
Confidence            5555543

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=98.58  E-value=1.2e-07  Score=92.06  Aligned_cols=84  Identities=26%  Similarity=0.369  Sum_probs=72.4

Q ss_pred             eecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           56 IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        56 iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      ||+|+||.||++.+..+++.+|+|.+....   ......+.+|+.++++++||||+++++.+     +.....+++|||+
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----~~~~~~~~v~e~~   75 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAF-----QTEEKLYLVLEYA   75 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHe-----ecCCeeEEEEecC
Confidence            699999999999998889999999987543   22456788999999999999999999884     4578899999999


Q ss_pred             ccCCchhhhhcc
Q 042887          133 KCGSSEDWMHQS  144 (628)
Q Consensus       133 ~~g~L~~~l~~~  144 (628)
                      +++++.+++...
T Consensus        76 ~~~~L~~~l~~~   87 (250)
T cd05123          76 PGGELFSHLSKE   87 (250)
T ss_pred             CCCcHHHHHHhc
Confidence            999999998654

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.58  E-value=2.4e-09  Score=110.49  Aligned_cols=198  Identities=25%  Similarity=0.276  Sum_probs=129.9

Q ss_pred             cccEEEccCCcceeeC-chhhhccCCcCeeeeccccccccCCcCCCCC-CCCCeEecccCcccc---cc---CccccC--
Q 042887          363 KITVIGMGDNQISGTI-PSEIKNLVNINAFGVEYNQLTGTIPHAIGEL-KNLQGLALVRNSLRG---TI---PDTLGN--  432 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~---~~---~~~~~~--  432 (628)
                      +.+.+.+-.-.-.+.. |-.+....+|+.|.+.++.+..  ...+..+ ..|++|- -+|.+..   .+   ...+++  
T Consensus        85 kt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~  161 (1096)
T KOG1859|consen   85 KTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSP  161 (1096)
T ss_pred             hheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccch
Confidence            4455544433322222 4456778899999999998862  1111111 1233332 2232221   00   011111  


Q ss_pred             -CCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCC
Q 042887          433 -LTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTT  511 (628)
Q Consensus       433 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  511 (628)
                       ...|...+.++|++. .+..++.-++.+    +.|||++|+++..  ..+..++.|++|||++|.+....-....++. 
T Consensus       162 ~Wn~L~~a~fsyN~L~-~mD~SLqll~al----e~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-  233 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLV-LMDESLQLLPAL----ESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-  233 (1096)
T ss_pred             hhhhHhhhhcchhhHH-hHHHHHHHHHHh----hhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-
Confidence             245777788899987 566666666666    8899999999843  3788899999999999999843323334444 


Q ss_pred             CCeEECcCceeeeecCccccCCCCCCEEECCCCcccccC-chhhhcccCCCeEeccCCcCccc
Q 042887          512 LEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQI-PKYLENLLFLAYLNLSYNHFEGE  573 (628)
Q Consensus       512 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~  573 (628)
                      |+.|.+++|.++.  -..+.++.+|+.||+++|-|.+.- -..+..|..|+.|+|.+|++...
T Consensus       234 L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  234 LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            9999999999872  235788999999999999987542 23466778899999999998753

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=98.58  E-value=1.7e-07  Score=94.61  Aligned_cols=86  Identities=22%  Similarity=0.305  Sum_probs=67.8

Q ss_pred             CceeecCCceeEEEEEEC--CCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeec
Q 042887           53 SNMIGQGSFGFVYKGKLG--ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~--~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      .+.||+|+||.||+|++.  .+++.||+|.+....  ....+.+|+.++++++||||+++++++.+   ......+++||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~---~~~~~~~lv~e   80 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLS---HADRKVWLLFD   80 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEec---CCCcEEEEEEe
Confidence            367999999999999975  366889999886432  23457899999999999999999988653   33567899999


Q ss_pred             ccccCCchhhhhcc
Q 042887          131 YMKCGSSEDWMHQS  144 (628)
Q Consensus       131 ~~~~g~L~~~l~~~  144 (628)
                      |+.+ ++.+++...
T Consensus        81 ~~~~-~l~~~~~~~   93 (317)
T cd07868          81 YAEH-DLWHIIKFH   93 (317)
T ss_pred             ccCC-CHHHHHHhc
Confidence            9874 777776543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.57  E-value=1.9e-07  Score=88.73  Aligned_cols=91  Identities=27%  Similarity=0.491  Sum_probs=78.3

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccc-hhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      |.+.+.||+|+||.||+|...++++.+|+|........ ..+.+.+|++.+++++|+|++++++.+.     .....+++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~-----~~~~~~~v   75 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFE-----DPEPLYLV   75 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeee-----cCCceEEE
Confidence            56678999999999999999888999999999765544 5678899999999999999999999854     35788999


Q ss_pred             ecccccCCchhhhhccc
Q 042887          129 YEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~~  145 (628)
                      +|+++++++.+++....
T Consensus        76 ~e~~~~~~L~~~~~~~~   92 (225)
T smart00221       76 MEYCEGGDLFDYLRKKG   92 (225)
T ss_pred             EeccCCCCHHHHHHhcc
Confidence            99999999999886543

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=98.57  E-value=1.5e-07  Score=93.14  Aligned_cols=90  Identities=28%  Similarity=0.486  Sum_probs=75.5

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      |++.+.||+|++|.||+|....+++.+|+|.+.....  .....+.+|+.++++++|+||+++++.+.     .....++
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~-----~~~~~~~   75 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFR-----HKGDLYL   75 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhc-----cCCCEEE
Confidence            5677899999999999999988999999999875432  34567889999999999999999999854     4688999


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      ++||+++ ++.+++....
T Consensus        76 v~e~~~~-~l~~~l~~~~   92 (283)
T cd05118          76 VFEFMDT-DLYKLIKDRQ   92 (283)
T ss_pred             EEeccCC-CHHHHHHhhc
Confidence            9999985 8887776543

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=98.57  E-value=1.3e-07  Score=95.03  Aligned_cols=91  Identities=29%  Similarity=0.369  Sum_probs=74.1

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ..|+..+.||+|+||.||+|++..+++.+|+|.+...   ......++.+|+++++.++|+|++++.+++.+     ...
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~   89 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----EHT   89 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEc-----CCe
Confidence            4477778899999999999999889999999998643   22334568899999999999999999998543     678


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||+. |++.+.+...
T Consensus        90 ~~lv~e~~~-~~l~~~~~~~  108 (308)
T cd06634          90 AWLVMEYCL-GSASDLLEVH  108 (308)
T ss_pred             eEEEEEccC-CCHHHHHHHc
Confidence            899999997 5777766443

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=98.56  E-value=2e-07  Score=91.39  Aligned_cols=94  Identities=22%  Similarity=0.228  Sum_probs=70.6

Q ss_pred             HHHHHhCCCCcCcee--ecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeecc
Q 042887           42 DLSKATNNFSASNMI--GQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSID  118 (628)
Q Consensus        42 ~~~~~~~~~~~~~~i--G~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~  118 (628)
                      +.....++|++.+.+  |+|+||.||+++...+++.+|+|..........     |+.....+ +||||+++++.+.   
T Consensus         8 ~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~---   79 (267)
T PHA03390          8 ELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVT---   79 (267)
T ss_pred             HHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEe---
Confidence            334445677776666  999999999999999999999999865432111     22222222 6999999999854   


Q ss_pred             ccccceeeeeecccccCCchhhhhccc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                        .....++||||+++|+|.+++....
T Consensus        80 --~~~~~~iv~e~~~~~~L~~~l~~~~  104 (267)
T PHA03390         80 --TLKGHVLIMDYIKDGDLFDLLKKEG  104 (267)
T ss_pred             --cCCeeEEEEEcCCCCcHHHHHHhcC
Confidence              3678999999999999999987643

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=98.56  E-value=1.7e-07  Score=91.48  Aligned_cols=86  Identities=22%  Similarity=0.334  Sum_probs=67.5

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeecccc---chhhhHHHHHHHHh-hcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---GAAKSFVTECEALS-NVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~E~~~l~-~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|.+..+|+.||+|.+.....   .....+..|..++. ..+|+|++++++.+.     .....|+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~-----~~~~~~lv~   76 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQ-----SKDYLYLVM   76 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEE-----cCCeEEEEE
Confidence            569999999999999988999999999865431   22234455555443 447999999999854     467899999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      ||+++++|.+++...
T Consensus        77 e~~~~~~L~~~l~~~   91 (260)
T cd05611          77 EYLNGGDCASLIKTL   91 (260)
T ss_pred             eccCCCCHHHHHHHc
Confidence            999999999988643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.55  E-value=1.2e-07  Score=93.73  Aligned_cols=89  Identities=25%  Similarity=0.506  Sum_probs=76.0

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      |+..+.||+|+||.||+|+...+++.||+|.+....  ....+.+.+|+.+++.++|+|++++++++.     .....++
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~-----~~~~~~~   75 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIH-----TERKLYL   75 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhh-----cCCceEE
Confidence            566788999999999999999899999999997653  334567889999999999999999999854     4688999


Q ss_pred             eecccccCCchhhhhcc
Q 042887          128 IYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~  144 (628)
                      |+||++ +++.+++.+.
T Consensus        76 v~e~~~-~~l~~~i~~~   91 (282)
T cd07829          76 VFEYCD-MDLKKYLDKR   91 (282)
T ss_pred             EecCcC-cCHHHHHHhh
Confidence            999998 5899988765

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=98.55  E-value=7.5e-08  Score=99.27  Aligned_cols=91  Identities=20%  Similarity=0.361  Sum_probs=75.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-C-----CCcccccceeeeccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-H-----RNLIKIITVCSSIDFKG  121 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h-----~nIv~l~~~~~~~~~~~  121 (628)
                      .+|++.+.||+|+||.|.+|.+.++++.||||+++.... -..+...|+.+|..++ |     -|+|++++++     .-
T Consensus       186 ~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~-f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F-----~f  259 (586)
T KOG0667|consen  186 YRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR-FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYF-----YF  259 (586)
T ss_pred             EEEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH-HHHHHHHHHHHHHHHhccCCCCCeeEEEeeecc-----cc
Confidence            478999999999999999999999999999999975432 3455667899999886 3     4899999994     44


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..+.++|+|... -.|+++++...
T Consensus       260 r~HlciVfELL~-~NLYellK~n~  282 (586)
T KOG0667|consen  260 RNHLCIVFELLS-TNLYELLKNNK  282 (586)
T ss_pred             ccceeeeehhhh-hhHHHHHHhcC
Confidence            889999999886 48999997654

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=98.55  E-value=2e-07  Score=92.13  Aligned_cols=85  Identities=25%  Similarity=0.314  Sum_probs=64.7

Q ss_pred             eeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHH---hhcCCCCcccccceeeeccccccceeeee
Q 042887           55 MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEAL---SNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        55 ~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l---~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      .||+|+||.||++....+++.||+|.+....   ......+.+|..++   ....||+|+.+++.+.     ..+..++|
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~lv   75 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFH-----TPDKLCFI   75 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEe-----cCCeEEEE
Confidence            4899999999999999899999999986542   11223344554433   3346999999988843     46788999


Q ss_pred             ecccccCCchhhhhcc
Q 042887          129 YEYMKCGSSEDWMHQS  144 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~  144 (628)
                      |||+++|+|.+++...
T Consensus        76 ~e~~~~~~L~~~i~~~   91 (279)
T cd05633          76 LDLMNGGDLHYHLSQH   91 (279)
T ss_pred             EecCCCCCHHHHHHhc
Confidence            9999999999888654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=98.54  E-value=2.1e-07  Score=93.59  Aligned_cols=96  Identities=21%  Similarity=0.371  Sum_probs=75.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc---ccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID---FKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~---~~~  121 (628)
                      .++|++.+.||+|+||.||+|++..+++.+|+|.+....  ......+.+|+++++.++||||+++++.+....   ...
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            578999999999999999999999999999999986542  223346789999999999999999998764311   123


Q ss_pred             cceeeeeecccccCCchhhhhc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ....++|+||+.+ ++.+.+..
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~  107 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLEN  107 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhc
Confidence            4568999999875 56555543

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.54  E-value=3.3e-08  Score=101.06  Aligned_cols=91  Identities=20%  Similarity=0.351  Sum_probs=75.0

Q ss_pred             cCceeecCCceeEEEEEECCCCcEEEEEEeecc----ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           52 ASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK----QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        52 ~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~----~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      ...+||+|+|-+||+|.+..+|..||=-.++..    .....++|..|+++|+.|+|||||++++.|.+.   ..+..-+
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~---~n~~in~  120 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDT---DNKTINF  120 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecC---CCceeee
Confidence            457899999999999999888888774433322    234458899999999999999999999998762   2467889


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      |+|.+.+|+|.+|.++.+
T Consensus       121 iTEL~TSGtLr~Y~kk~~  138 (632)
T KOG0584|consen  121 ITELFTSGTLREYRKKHR  138 (632)
T ss_pred             eeecccCCcHHHHHHHhc
Confidence            999999999999998776

>PTZ00284 protein kinase; Provisional

Probab=98.53  E-value=1.9e-07  Score=99.51  Aligned_cols=93  Identities=20%  Similarity=0.300  Sum_probs=70.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCC------Ccccccceeeeccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHR------NLIKIITVCSSIDF  119 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~------nIv~l~~~~~~~~~  119 (628)
                      ..++|++.+.||+|+||.||+|.+..+++.||||+++.... ..+.+.+|+.+++.++|.      +++++++++..   
T Consensus       127 ~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~-~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~---  202 (467)
T PTZ00284        127 STQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPK-YTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN---  202 (467)
T ss_pred             CCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchh-hHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc---
Confidence            45789999999999999999999998999999999965322 234456777777777654      46777766432   


Q ss_pred             cccceeeeeecccccCCchhhhhcc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                       .....++|||++ ++++.+++.+.
T Consensus       203 -~~~~~~iv~~~~-g~~l~~~l~~~  225 (467)
T PTZ00284        203 -ETGHMCIVMPKY-GPCLLDWIMKH  225 (467)
T ss_pred             -CCceEEEEEecc-CCCHHHHHHHc
Confidence             245788999987 67888877654

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=98.51  E-value=2.7e-07  Score=91.13  Aligned_cols=85  Identities=22%  Similarity=0.284  Sum_probs=64.8

Q ss_pred             eeecCCceeEEEEEECCCCcEEEEEEeecccc---chhhhHHHHHH---HHhhcCCCCcccccceeeeccccccceeeee
Q 042887           55 MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---GAAKSFVTECE---ALSNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        55 ~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~E~~---~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      .||+|+||.||+|.+..+++.||+|.+.....   .....+..|..   .++...||+|+++++.+     ...+..++|
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~v   75 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF-----HTPDKLSFI   75 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeee-----ecCCEEEEE
Confidence            48999999999999988999999999875421   11222344443   34445799999998884     447789999


Q ss_pred             ecccccCCchhhhhcc
Q 042887          129 YEYMKCGSSEDWMHQS  144 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~  144 (628)
                      |||+++|+|.+++...
T Consensus        76 ~e~~~g~~L~~~l~~~   91 (278)
T cd05606          76 LDLMNGGDLHYHLSQH   91 (278)
T ss_pred             EecCCCCcHHHHHHhc
Confidence            9999999999888643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=4.4e-08  Score=99.79  Aligned_cols=91  Identities=18%  Similarity=0.278  Sum_probs=78.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ..|..++.||-|+||+|.+++..++...||+|.+.+.+   +..+.....|-+||.+-+.+.||+++..     |++.+.
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyyS-----FQDkdn  703 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYS-----FQDKDN  703 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEE-----eccCCc
Confidence            34677889999999999999998898899999997753   4556667889999999999999999988     677999


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .|+||||++|||+-..+.+
T Consensus       704 LYFVMdYIPGGDmMSLLIr  722 (1034)
T KOG0608|consen  704 LYFVMDYIPGGDMMSLLIR  722 (1034)
T ss_pred             eEEEEeccCCccHHHHHHH
Confidence            9999999999998776643

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=98.51  E-value=5e-08  Score=89.39  Aligned_cols=92  Identities=18%  Similarity=0.330  Sum_probs=78.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .+.|.+.+.+|+|.||++-+++++.+...+++|.+..... ..+.|.||..+--.+. |.||+..+++.    |++.+..
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t-t~~dF~rEfhY~~~Ls~H~hIi~tY~va----Fqt~d~Y   97 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT-TQADFVREFHYSFFLSPHQHIIDTYEVA----FQTSDAY   97 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh-hHHHHHHHhccceeeccchhhhHHHHHH----hhcCceE
Confidence            4578899999999999999999999999999999976533 3578999998766774 99999988864    7788999


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      .+++||++.|+|...+..
T Consensus        98 vF~qE~aP~gdL~snv~~  115 (378)
T KOG1345|consen   98 VFVQEFAPRGDLRSNVEA  115 (378)
T ss_pred             EEeeccCccchhhhhcCc
Confidence            999999999999987754

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.51  E-value=3.8e-07  Score=93.02  Aligned_cols=94  Identities=23%  Similarity=0.300  Sum_probs=73.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc-ccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~~~  123 (628)
                      ..+|...+.||+|+||.||+|++..+|+.||+|.+....  ......+.+|+.+++.++||||+++++++.... .....
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            368999999999999999999998899999999986532  223456889999999999999999999865411 12234


Q ss_pred             eeeeeecccccCCchhhh
Q 042887          124 FKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l  141 (628)
                      ..++|+||+.. ++.++.
T Consensus        94 ~~~lv~e~~~~-~l~~~~  110 (342)
T cd07879          94 DFYLVMPYMQT-DLQKIM  110 (342)
T ss_pred             eEEEEeccccc-CHHHHH
Confidence            56899999864 555443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=98.50  E-value=3.4e-07  Score=92.33  Aligned_cols=84  Identities=23%  Similarity=0.313  Sum_probs=66.8

Q ss_pred             ceeecCCceeEEEEEECC--CCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeecc
Q 042887           54 NMIGQGSFGFVYKGKLGE--TGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEY  131 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~--~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~  131 (628)
                      ..||+|+||.||+|+...  +++.||+|.+....  ....+.+|+.++++++||||+++++++..   ......+++|||
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~---~~~~~~~lv~e~   81 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLS---HSDRKVWLLFDY   81 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEec---cCCCeEEEEEee
Confidence            579999999999999753  56789999886432  23467899999999999999999998653   345678999999


Q ss_pred             cccCCchhhhhc
Q 042887          132 MKCGSSEDWMHQ  143 (628)
Q Consensus       132 ~~~g~L~~~l~~  143 (628)
                      +.+ ++.+++..
T Consensus        82 ~~~-~l~~~~~~   92 (317)
T cd07867          82 AEH-DLWHIIKF   92 (317)
T ss_pred             eCC-cHHHHHHh
Confidence            875 67777643

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.50  E-value=2.4e-07  Score=97.48  Aligned_cols=99  Identities=14%  Similarity=0.284  Sum_probs=69.3

Q ss_pred             HhCCCCcCceeecCCceeEEEEEEC----------------CCCcEEEEEEeeccccchh--------------hhHHHH
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLG----------------ETGTTVAVKVMNLKQKGAA--------------KSFVTE   95 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~----------------~~~~~~avK~~~~~~~~~~--------------~~~~~E   95 (628)
                      ..++|++.++||+|+||.||+|...                ..++.||||.+........              +.+..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            4678999999999999999999752                2456799999865432222              334456


Q ss_pred             HHHHhhcCCCCc-----ccccceeeec---cccccceeeeeecccccCCchhhhhcc
Q 042887           96 CEALSNVRHRNL-----IKIITVCSSI---DFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus        96 ~~~l~~l~h~nI-----v~l~~~~~~~---~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      +.++.+++|.++     ++++++|...   ........++|+||+++|+|.+++...
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~  279 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGK  279 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhc
Confidence            777777766554     4555555421   011235679999999999999999754

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=98.49  E-value=2.1e-07  Score=95.01  Aligned_cols=97  Identities=20%  Similarity=0.261  Sum_probs=76.3

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccc-ccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF-KGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~-~~~  122 (628)
                      ..++|++.+.||+|+||.||+|++..+++.||+|.+...  .....+.+.+|+.+++.++||||+++.+++...+. ...
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            356799999999999999999999989999999988643  22344667889999999999999999887543111 222


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...++|+||+ ++++.+++..
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~  112 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKC  112 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhc
Confidence            3589999998 5688888754

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.47  E-value=3.3e-08  Score=88.29  Aligned_cols=89  Identities=20%  Similarity=0.403  Sum_probs=75.6

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccce
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .+++|++.+.+|+|.|+.||.|....+++.++||+++....   +.+.||+.+++.+. ||||++++++..+   ...+.
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkk---kKIkREikIL~nL~gg~NIi~L~DiV~D---p~Skt  109 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKK---KKIKREIKILQNLRGGPNIIKLLDIVKD---PESKT  109 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHH---HHHHHHHHHHHhccCCCCeeehhhhhcC---ccccC
Confidence            46789999999999999999999988999999999976543   56889999999997 9999999998765   23456


Q ss_pred             eeeeecccccCCchhh
Q 042887          125 KALIYEYMKCGSSEDW  140 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~  140 (628)
                      ..+++||+.+.+....
T Consensus       110 paLiFE~v~n~Dfk~l  125 (338)
T KOG0668|consen  110 PSLIFEYVNNTDFKQL  125 (338)
T ss_pred             chhHhhhhccccHHHH
Confidence            7899999988776544

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=98.47  E-value=4.6e-07  Score=89.85  Aligned_cols=94  Identities=23%  Similarity=0.408  Sum_probs=72.6

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhc---CCCCcccccceeeeccccccce
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNV---RHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l---~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      |++.+.||+|+||.||+|++..+++.||+|.+....  ......+.+|+.+++++   .|||++++++.+.+.+......
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            677889999999999999998889999999997532  22345577888877666   5999999999976533223345


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .+++|||+.+ ++.+++...
T Consensus        81 ~~l~~e~~~~-~l~~~l~~~   99 (287)
T cd07838          81 LTLVFEHVDQ-DLATYLSKC   99 (287)
T ss_pred             eEEEehhccc-CHHHHHHHc
Confidence            8999999985 788877543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=98.47  E-value=3e-07  Score=92.56  Aligned_cols=80  Identities=26%  Similarity=0.238  Sum_probs=65.2

Q ss_pred             CceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeecccccCCc
Q 042887           60 SFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSS  137 (628)
Q Consensus        60 ~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L  137 (628)
                      ++|.||.++...+++.||+|++...  .....+.+.+|+++++.++||||+++++++.     .....+++|||+++|++
T Consensus        12 ~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~-----~~~~~~~~~e~~~~~~l   86 (314)
T cd08216          12 DLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFI-----VDSELYVVSPLMAYGSC   86 (314)
T ss_pred             CCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheee-----cCCeEEEEEeccCCCCH
Confidence            4455666666668999999999754  3345567999999999999999999999854     46788999999999999


Q ss_pred             hhhhhcc
Q 042887          138 EDWMHQS  144 (628)
Q Consensus       138 ~~~l~~~  144 (628)
                      .+++...
T Consensus        87 ~~~l~~~   93 (314)
T cd08216          87 EDLLKTH   93 (314)
T ss_pred             HHHHHHh
Confidence            9998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PHA03207 serine/threonine kinase US3; Provisional

Probab=98.46  E-value=3.1e-07  Score=95.53  Aligned_cols=86  Identities=17%  Similarity=0.188  Sum_probs=70.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECC--CCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGE--TGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~--~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ...+|++.+.||+|+||.||+|....  +++.||+|.+...     ....+|++++++++||||+++++++     ....
T Consensus        90 ~~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~-----~~~~  159 (392)
T PHA03207         90 VRMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAY-----RWKS  159 (392)
T ss_pred             ccCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeE-----eeCC
Confidence            34579999999999999999998643  4578999987543     2356899999999999999999884     3477


Q ss_pred             eeeeeecccccCCchhhhh
Q 042887          124 FKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~  142 (628)
                      ..+++||++. +++.+++.
T Consensus       160 ~~~lv~e~~~-~~l~~~l~  177 (392)
T PHA03207        160 TVCMVMPKYK-CDLFTYVD  177 (392)
T ss_pred             EEEEEehhcC-CCHHHHHH
Confidence            8999999986 57888773

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.46  E-value=7.6e-08  Score=90.57  Aligned_cols=94  Identities=20%  Similarity=0.263  Sum_probs=77.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..+|.+.++||+|+|++|..++.+++.+.||+|++++.-   ..+..=...|..+.... .||.+|.++.+     |++.
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhsc-----fqte  323 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSC-----FQTE  323 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhh-----hccc
Confidence            467999999999999999999999999999999998742   22333345666666555 59999999998     7789


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .+.++|.||++||+|--+|.+.+
T Consensus       324 srlffvieyv~ggdlmfhmqrqr  346 (593)
T KOG0695|consen  324 SRLFFVIEYVNGGDLMFHMQRQR  346 (593)
T ss_pred             ceEEEEEEEecCcceeeehhhhh
Confidence            99999999999999987776554

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.44  E-value=6.5e-08  Score=106.55  Aligned_cols=94  Identities=27%  Similarity=0.396  Sum_probs=80.2

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .+-+|+....||.|.||.||.|....+|+..|+|-+..+.  ....+.+.+|..++..++|||+|+++++...     ..
T Consensus      1233 V~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvH-----Re 1307 (1509)
T KOG4645|consen 1233 VTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVH-----RE 1307 (1509)
T ss_pred             ceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeec-----HH
Confidence            3456777888999999999999999999999999886543  3445667899999999999999999999764     67


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++-||||++|+|.+.+...
T Consensus      1308 kv~IFMEyC~~GsLa~ll~~g 1328 (1509)
T KOG4645|consen 1308 KVYIFMEYCEGGSLASLLEHG 1328 (1509)
T ss_pred             HHHHHHHHhccCcHHHHHHhc
Confidence            789999999999999987654

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.44  E-value=3e-07  Score=84.48  Aligned_cols=80  Identities=15%  Similarity=0.140  Sum_probs=57.1

Q ss_pred             CceeecCCceeEEEEEECCCCcEEEEEEeeccccc--h-------hhhH-----------------HHHHHHHhhcCCCC
Q 042887           53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG--A-------AKSF-----------------VTECEALSNVRHRN  106 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~--~-------~~~~-----------------~~E~~~l~~l~h~n  106 (628)
                      .+.||+|+||.||+|.+. +|+.||+|+++.....  .       ..+|                 .+|+..+.++.+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAG   80 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            467999999999999996 8999999999754210  1       1122                 34899999998887


Q ss_pred             cccccceeeeccccccceeeeeecccccCCchhh
Q 042887          107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDW  140 (628)
Q Consensus       107 Iv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~  140 (628)
                      +.......       ....++||||++++++...
T Consensus        81 v~~p~~~~-------~~~~~iVmE~i~g~~l~~~  107 (190)
T cd05147          81 IPCPEPIL-------LKSHVLVMEFIGDDGWAAP  107 (190)
T ss_pred             CCCCcEEE-------ecCCEEEEEEeCCCCCcch
Confidence            74433221       1234899999999876554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=98.44  E-value=2.9e-07  Score=91.42  Aligned_cols=86  Identities=20%  Similarity=0.215  Sum_probs=69.7

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcC-CCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|+..+.||+|+||.||++.+..+++.||+|.+.... ......+.+|+.++.++. ||||+++++++.     .....
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~-----~~~~~   78 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALF-----REGDC   78 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEe-----cCCcE
Confidence            35666788999999999999999999999999987543 234567889999999996 999999999854     36778


Q ss_pred             eeeecccccCCchh
Q 042887          126 ALIYEYMKCGSSED  139 (628)
Q Consensus       126 ~lv~e~~~~g~L~~  139 (628)
                      +++|||+.. ++.+
T Consensus        79 ~~~~e~~~~-~l~~   91 (288)
T cd06616          79 WICMELMDI-SLDK   91 (288)
T ss_pred             EEEEecccC-CHHH
Confidence            899999874 4443

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.44  E-value=4.2e-07  Score=84.70  Aligned_cols=94  Identities=15%  Similarity=0.051  Sum_probs=71.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccch---hhh------HHHHHHHHhhcCCCCcccccceeee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA---AKS------FVTECEALSNVRHRNLIKIITVCSS  116 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~---~~~------~~~E~~~l~~l~h~nIv~l~~~~~~  116 (628)
                      ..++|+..+++|.|+||.||.+..  ++..+|+|.+.......   ...      +.+|+..+.++.||+|..+.+....
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~  106 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLL  106 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeee
Confidence            468899999999999999999766  56789999996542211   122      6799999999999999998876443


Q ss_pred             cc---ccccceeeeeecccccCCchhhh
Q 042887          117 ID---FKGVDFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       117 ~~---~~~~~~~~lv~e~~~~g~L~~~l  141 (628)
                      ..   +......+++|||++|.++.++.
T Consensus       107 ~~~~~~~~~~~~~lvmEyi~G~tL~~~~  134 (232)
T PRK10359        107 AERKTLRYAHTYIMLIEYIEGVELNDMP  134 (232)
T ss_pred             cccccccccCCeEEEEEEECCccHHHhh
Confidence            11   12245689999999999997763

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.42  E-value=6.9e-07  Score=89.12  Aligned_cols=92  Identities=21%  Similarity=0.262  Sum_probs=73.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.++... ......+.+|+.++.+.. ||||+++++.+.     ...
T Consensus        13 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~-----~~~   87 (296)
T cd06618          13 DLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFI-----TDS   87 (296)
T ss_pred             CcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeee-----cCC
Confidence            4567899999999999999999998889999999997543 223455777887777775 999999999964     367


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..|++|||+. +.+.+.+..
T Consensus        88 ~~~~v~e~~~-~~l~~l~~~  106 (296)
T cd06618          88 DVFICMELMS-TCLDKLLKR  106 (296)
T ss_pred             eEEEEeeccC-cCHHHHHHH
Confidence            8999999985 466655543

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=98.41  E-value=5.2e-08  Score=90.56  Aligned_cols=104  Identities=20%  Similarity=0.250  Sum_probs=82.7

Q ss_pred             HHhCCCCc-CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeecccccc
Q 042887           45 KATNNFSA-SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        45 ~~~~~~~~-~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..+++|.+ .++||-|--|+|..+.++.+|+.+|+|++...     ....||++..... .|||||.+++++.. .+...
T Consensus        58 ~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds-----~KARrEVeLHw~~s~h~~iV~IidVyeN-s~~~r  131 (400)
T KOG0604|consen   58 SITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS-----PKARREVELHWMASGHPHIVSIIDVYEN-SYQGR  131 (400)
T ss_pred             cchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC-----HHHHhHhhhhhhhcCCCceEEeehhhhh-hccCc
Confidence            45788887 47899999999999999999999999988543     3456888876666 59999999998653 35667


Q ss_pred             ceeeeeecccccCCchhhhhcccc-ccccccCC
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSND-KLEAGNLG  154 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~-~~~~~~~~  154 (628)
                      +...+|||+++||+|+..+.+++. ..++...+
T Consensus       132 kcLLiVmE~meGGeLfsriq~~g~~afTErea~  164 (400)
T KOG0604|consen  132 KCLLIVMECMEGGELFSRIQDRGDQAFTEREAS  164 (400)
T ss_pred             eeeEeeeecccchHHHHHHHHcccccchHHHHH
Confidence            889999999999999999987764 34444333

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.39  E-value=6.3e-08  Score=88.76  Aligned_cols=224  Identities=21%  Similarity=0.266  Sum_probs=125.0

Q ss_pred             cCcccEEEccCCccccccc----hhhhCCCCCCEEecccCcCc---cccc-------ccccCCCCCCEeecccccCcccC
Q 042887          161 LLKLEMIDVGDNQLIGKFP----DFIANFSALEAIDISANMLG---GRIP-------DSLCQLRSLNYLSISENNFSCKL  226 (628)
Q Consensus       161 l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~---~~~~-------~~~~~l~~L~~L~Ls~N~i~~~~  226 (628)
                      +..++.+|||+|.|...-.    ..+.+-.+|++.++|.-...   ..++       .++.++++|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            5678899999999976544    44556788888888864321   1122       34567888888888888887655


Q ss_pred             CcC----ccCCCCCCEEEeecccCcccCC-hhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeeccc
Q 042887          227 PLS----IWNISSLEIISLHSNRFEGSLP-LNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKI  301 (628)
Q Consensus       227 p~~----~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~  301 (628)
                      |..    +.+-+.|++|.+++|.+- .+. ..++..+..     |..|       +-.++-+.|+......|++......
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~-----la~n-------KKaa~kp~Le~vicgrNRlengs~~  175 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFH-----LAYN-------KKAADKPKLEVVICGRNRLENGSKE  175 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHH-----HHHH-------hhhccCCCceEEEeccchhccCcHH
Confidence            543    456677888888888764 221 111110000     1111       1223445677777777766432221


Q ss_pred             ----ccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHH----hccccccEEEccCCc
Q 042887          302 ----DFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA----NLSAKITVIGMGDNQ  373 (628)
Q Consensus       302 ----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~  373 (628)
                          .|..-.+|+++.+..|.|.......+.+ ..+..+.+|+.||+++|.++......++    .++ .++.|.+.+|.
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~-~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDCl  253 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAF-LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCL  253 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHH-HHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchh
Confidence                1222256777777777665422221111 2344567778888888877655443333    333 35666666666


Q ss_pred             ceeeCchhh------hccCCcCeeeecccccc
Q 042887          374 ISGTIPSEI------KNLVNINAFGVEYNQLT  399 (628)
Q Consensus       374 l~~~~~~~l------~~l~~L~~L~l~~n~l~  399 (628)
                      ++......+      ...++|..|...+|.+.
T Consensus       254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            654332221      12345555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.38  E-value=8.8e-08  Score=87.81  Aligned_cols=223  Identities=17%  Similarity=0.200  Sum_probs=107.0

Q ss_pred             hhCCCCCCEEecccCcCccccccc----ccCCCCCCEeecccccCc---ccCC-------cCccCCCCCCEEEeecccCc
Q 042887          182 IANFSALEAIDISANMLGGRIPDS----LCQLRSLNYLSISENNFS---CKLP-------LSIWNISSLEIISLHSNRFE  247 (628)
Q Consensus       182 ~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~i~---~~~p-------~~~~~l~~L~~L~L~~n~l~  247 (628)
                      +..+..+..+|||+|.|......+    +.+-.+|+..+++.--..   +.++       .++.++++|+..+||.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            445677777777777776544333    334456666665543211   1111       22334444555555555444


Q ss_pred             ccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeeccccc-------------ccCCCCCEEEc
Q 042887          248 GSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDF-------------NRLSNLSRLFL  314 (628)
Q Consensus       248 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-------------~~l~~L~~L~L  314 (628)
                      ...|..+.                     +.++.-+.|++|.+++|.+.-+....+             ..-|.|+....
T Consensus       106 ~~~~e~L~---------------------d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238         106 SEFPEELG---------------------DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             cccchHHH---------------------HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            33333222                     223455666666666665542222211             12355666666


Q ss_pred             cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887          315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE  394 (628)
Q Consensus       315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  394 (628)
                      ..|++...+...+  ...+..-..|+.+.+.+|.|.......+.                    -..+..+.+|+.||+.
T Consensus       165 grNRlengs~~~~--a~~l~sh~~lk~vki~qNgIrpegv~~L~--------------------~~gl~y~~~LevLDlq  222 (388)
T COG5238         165 GRNRLENGSKELS--AALLESHENLKEVKIQQNGIRPEGVTMLA--------------------FLGLFYSHSLEVLDLQ  222 (388)
T ss_pred             ccchhccCcHHHH--HHHHHhhcCceeEEeeecCcCcchhHHHH--------------------HHHHHHhCcceeeecc
Confidence            6666544332211  11122223445555555544322111111                    1123445566666666


Q ss_pred             ccccccc----CCcCCCCCCCCCeEecccCccccccCccc----c--CCCCCCeEecCCcccc
Q 042887          395 YNQLTGT----IPHAIGELKNLQGLALVRNSLRGTIPDTL----G--NLTLLNRLFLGFNNLQ  447 (628)
Q Consensus       395 ~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~--~l~~L~~L~L~~N~l~  447 (628)
                      .|-++-.    ...+++.++.|+.|.+.+|-++.....++    .  ..++|..|-..+|.+.
T Consensus       223 DNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         223 DNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             ccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            6655421    22345666677777777776664333222    1  2356666666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=2.7e-07  Score=85.83  Aligned_cols=185  Identities=16%  Similarity=0.179  Sum_probs=100.7

Q ss_pred             CcccEEEccCCcccccc-chhhh-CCCCCCEEecccCcCcc--cccccccCCCCCCEeecccccCcccCCcCccCCCCCC
Q 042887          162 LKLEMIDVGDNQLIGKF-PDFIA-NFSALEAIDISANMLGG--RIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE  237 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~-~~~~~-~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~  237 (628)
                      +.++.|-+.+..|-..- ...|+ ..+.++++||..|.|+.  .+...+.+++.|++|+|+.|.+...+...-..+.+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            34445555555443221 12232 45778888888888762  1222346788888888888887743322224667888


Q ss_pred             EEEeecccCcccCChhhhhCCCCCcEEecccCcccccc--cccccCC-CCCCEEEcccccceee--cccccccCCCCCEE
Q 042887          238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSL--PHSFSNA-SNLQVLDVYKNHFSGQ--VKIDFNRLSNLSRL  312 (628)
Q Consensus       238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l-~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L  312 (628)
                      +|-|.+..+...--......+|.++.|.+|.|.+....  ....... +.+++|....|...--  ....-..++++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            88888887765444444556777788888877544211  1111111 2444444444422100  00011224677777


Q ss_pred             EccCCcCCCcCCCCccccccccCCCCCceeecccCCccc
Q 042887          313 FLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGG  351 (628)
Q Consensus       313 ~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  351 (628)
                      .+..|.+.+....     .....++.+..|+|+.|++..
T Consensus       205 ~v~e~PlK~~s~e-----k~se~~p~~~~LnL~~~~ids  238 (418)
T KOG2982|consen  205 FVCEGPLKTESSE-----KGSEPFPSLSCLNLGANNIDS  238 (418)
T ss_pred             eeecCcccchhhc-----ccCCCCCcchhhhhccccccc
Confidence            7777777654332     223334455566666666643

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.35  E-value=5.5e-07  Score=98.18  Aligned_cols=99  Identities=23%  Similarity=0.403  Sum_probs=81.8

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECC-------CCcEEEEEEeecc-ccchhhhHHHHHHHHhhcC-CCCcccccc
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGE-------TGTTVAVKVMNLK-QKGAAKSFVTECEALSNVR-HRNLIKIIT  112 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~-------~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~-h~nIv~l~~  112 (628)
                      .++...++..+.+.+|+|+||.||+|....       ....||||..+.. ...+.+.+.+|+++|+.+. |+||+.+++
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            456666677777899999999999998431       1346999998754 3346678999999999994 999999999


Q ss_pred             eeeeccccccceeeeeecccccCCchhhhhccc
Q 042887          113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +|+.     ....++|+|||..|+|.+|++..+
T Consensus       370 ~~t~-----~~~~~~v~Ey~~~G~L~~~Lr~~r  397 (609)
T KOG0200|consen  370 ACTQ-----DGPLYVIVEYAEHGDLLEFLRKKR  397 (609)
T ss_pred             eecc-----CCceEEEEEeccCCcHHHHHHhcc
Confidence            9875     678899999999999999998777

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=1.2e-07  Score=88.04  Aligned_cols=112  Identities=17%  Similarity=0.199  Sum_probs=54.0

Q ss_pred             ccCCCCCCEeecccccCcccCC-cCcc-CCCCCCEEEeecccCcccC-ChhhhhCCCCCcEEecccCcccccccccccCC
Q 042887          206 LCQLRSLNYLSISENNFSCKLP-LSIW-NISSLEIISLHSNRFEGSL-PLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNA  282 (628)
Q Consensus       206 ~~~l~~L~~L~Ls~N~i~~~~p-~~~~-~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  282 (628)
                      +..+.-++.|.+.++.|..+.. ..|+ ..+.+++|||.+|.|++-- -..+...+|.|++|+++.|++...+-..-..+
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~  120 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL  120 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence            3344445556665555542221 1122 3456677777777765200 01122346666666666666653322211345


Q ss_pred             CCCCEEEcccccceeecc-cccccCCCCCEEEccCC
Q 042887          283 SNLQVLDVYKNHFSGQVK-IDFNRLSNLSRLFLSKN  317 (628)
Q Consensus       283 ~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~n  317 (628)
                      .+|+.|-|.+..+.-... ..+..+|.+++|+++.|
T Consensus       121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            566666666655432211 12334555555555555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.6e-08  Score=93.76  Aligned_cols=181  Identities=15%  Similarity=0.144  Sum_probs=126.5

Q ss_pred             CcccEEEccCCccccc-cchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeeccccc-CcccCC-cCccCCCCCCE
Q 042887          162 LKLEMIDVGDNQLIGK-FPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENN-FSCKLP-LSIWNISSLEI  238 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-i~~~~p-~~~~~l~~L~~  238 (628)
                      ++|+.||||+..|+.. ....+..+++|+.|.|.++++.+.+...++.-.+|+.|+|+.+. ++.... --+.+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4699999999998743 33456789999999999999998888899999999999999864 442211 22578999999


Q ss_pred             EEeecccCcccCCh-hhhhCCCCCcEEecccCccc---ccccccccCCCCCCEEEccccc-ceeecccccccCCCCCEEE
Q 042887          239 ISLHSNRFEGSLPL-NIGFNIPNVNFLSVGQNNFT---GSLPHSFSNASNLQVLDVYKNH-FSGQVKIDFNRLSNLSRLF  313 (628)
Q Consensus       239 L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~  313 (628)
                      |+|+.|.+....-. .+..--++|+.|+|++..=.   ..+.--...+++|.+|||++|. ++......|.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            99999988643321 22223578888999886422   1222234578899999999874 4433444567788899999


Q ss_pred             ccCCcCCCcCCCCccccccccCCCCCceeecccC
Q 042887          314 LSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTN  347 (628)
Q Consensus       314 L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n  347 (628)
                      ++.|..  +.++   .+-.+...++|.+|++.+.
T Consensus       345 lsRCY~--i~p~---~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPE---TLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChH---HeeeeccCcceEEEEeccc
Confidence            888853  2322   2223455667777776554

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=98.34  E-value=1.3e-06  Score=88.60  Aligned_cols=93  Identities=23%  Similarity=0.272  Sum_probs=72.4

Q ss_pred             CCCcCceeecCCceeEEEEEECCC--CcEEEEEEeecc--ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGET--GTTVAVKVMNLK--QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~--~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      +|++.+.||+|+||.||+|.+..+  ++.||+|.+...  .....+.+.+|+++++++ .||||+++++.+... .....
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-~~~~~   79 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVF-PGNFN   79 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeec-cccCC
Confidence            478889999999999999999877  889999998643  222346688999999999 499999998875431 12335


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..|+++||+. ++|.+++..
T Consensus        80 ~~~~~~e~~~-~~L~~~l~~   98 (332)
T cd07857          80 ELYLYEELME-ADLHQIIRS   98 (332)
T ss_pred             cEEEEEeccc-CCHHHHHhc
Confidence            6788999886 578887754

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.30  E-value=5.3e-08  Score=79.90  Aligned_cols=109  Identities=16%  Similarity=0.302  Sum_probs=76.1

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      .+|+..+|++|.+....+..-..++.++.|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..|.+|-.|+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            45777888888887554444456668888888888887 66777888888888888888887 57777777888888888


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCccccc
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS  274 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  274 (628)
                      .+|.+. .+|.+.+. -.+.-..++.++.+.+.
T Consensus       131 ~~na~~-eid~dl~~-s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  131 PENARA-EIDVDLFY-SSLPALIKLGNEPLGDE  161 (177)
T ss_pred             CCCccc-cCcHHHhc-cccHHHHHhcCCccccc
Confidence            888887 77777552 22222233444444433

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.29  E-value=2.3e-06  Score=80.07  Aligned_cols=84  Identities=29%  Similarity=0.530  Sum_probs=72.2

Q ss_pred             eecCCceeEEEEEECCCCcEEEEEEeeccccc-hhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccccc
Q 042887           56 IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG-AAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKC  134 (628)
Q Consensus        56 iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~  134 (628)
                      ||+|++|.||++....+++.+++|+....... ..+.+.+|+..++.++|++|+++++.+.     .....++++|++.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~-----~~~~~~~~~e~~~~   75 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFE-----DENHLYLVMEYCEG   75 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeee-----cCCeEEEEEecCCC
Confidence            68999999999999877999999998765432 3467899999999999999999999854     35789999999999


Q ss_pred             CCchhhhhcc
Q 042887          135 GSSEDWMHQS  144 (628)
Q Consensus       135 g~L~~~l~~~  144 (628)
                      +++.+++...
T Consensus        76 ~~l~~~~~~~   85 (215)
T cd00180          76 GSLKDLLKEN   85 (215)
T ss_pred             CcHHHHHHhc
Confidence            9999998754

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PHA03210 serine/threonine kinase US3; Provisional

Probab=98.26  E-value=7.7e-07  Score=95.31  Aligned_cols=92  Identities=20%  Similarity=0.207  Sum_probs=65.9

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCC-cEEEEEEee--------------c---cccchhhhHHHHHHHHhhcCCCCc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETG-TTVAVKVMN--------------L---KQKGAAKSFVTECEALSNVRHRNL  107 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~-~~~avK~~~--------------~---~~~~~~~~~~~E~~~l~~l~h~nI  107 (628)
                      ..++|++.+.||+|+||.||+|..+... ..++.|.+.              +   ........+.+|+.+|++++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            3578999999999999999998764332 222222111              0   011234568899999999999999


Q ss_pred             ccccceeeeccccccceeeeeecccccCCchhhhhc
Q 042887          108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       108 v~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      |++++++.     ..+..|+++|++. +++.+++..
T Consensus       226 v~l~~~~~-----~~~~~~lv~e~~~-~~l~~~l~~  255 (501)
T PHA03210        226 LKIEEILR-----SEANTYMITQKYD-FDLYSFMYD  255 (501)
T ss_pred             CcEeEEEE-----ECCeeEEEEeccc-cCHHHHHhh
Confidence            99999854     4678899999986 467766643

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.26  E-value=5e-07  Score=91.05  Aligned_cols=95  Identities=14%  Similarity=0.181  Sum_probs=77.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeec--cccchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~--~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~  123 (628)
                      -..|++.+.||+||-++||++... +.+.||+|.+..  .+.+....|.+|+..|.+++ |-+||+++++...     ++
T Consensus       360 g~~Yeilk~iG~GGSSkV~kV~~s-~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~-----d~  433 (677)
T KOG0596|consen  360 GREYEILKQIGSGGSSKVFKVLNS-DKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVT-----DG  433 (677)
T ss_pred             cchhhHHHhhcCCCcceeeeeecC-CCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeecc-----Cc
Confidence            456999999999999999999984 456677776643  24566788999999999996 9999999999653     88


Q ss_pred             eeeeeecccccCCchhhhhcccccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      +.||||||.+ -||..++.+.....
T Consensus       434 ~lYmvmE~Gd-~DL~kiL~k~~~~~  457 (677)
T KOG0596|consen  434 YLYMVMECGD-IDLNKILKKKKSID  457 (677)
T ss_pred             eEEEEeeccc-ccHHHHHHhccCCC
Confidence            9999999876 48888887766444

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.24  E-value=2.8e-06  Score=78.37  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=57.6

Q ss_pred             CceeecCCceeEEEEEECCCCcEEEEEEeeccccc--h------------------------hhhHHHHHHHHhhcCCCC
Q 042887           53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG--A------------------------AKSFVTECEALSNVRHRN  106 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~--~------------------------~~~~~~E~~~l~~l~h~n  106 (628)
                      .+.||+|+||.||+|.+. +|+.||||+++.....  .                        ...+.+|.+.+.++.|++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05145           2 NGCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAG   80 (190)
T ss_pred             CceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            478999999999999986 8999999999754210  0                        112357889999999998


Q ss_pred             cccccceeeeccccccceeeeeecccccCCchh
Q 042887          107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSED  139 (628)
Q Consensus       107 Iv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~  139 (628)
                      |........       ...++||||++|+++..
T Consensus        81 i~~p~~~~~-------~~~~lVmE~~~g~~~~~  106 (190)
T cd05145          81 VPVPEPILL-------KKNVLVMEFIGDDGSPA  106 (190)
T ss_pred             CCCceEEEe-------cCCEEEEEEecCCCchh
Confidence            755444321       12489999999885543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=98.22  E-value=2.5e-06  Score=82.04  Aligned_cols=76  Identities=13%  Similarity=0.024  Sum_probs=62.1

Q ss_pred             CCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeecccccCCch
Q 042887           59 GSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSE  138 (628)
Q Consensus        59 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~  138 (628)
                      |.||.||++++..+++.||+|.+....     .+.+|...+....||||+++++.+.     .....+++|||+++|+|.
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~lv~e~~~~~~L~   73 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIV-----SEDSVFLVLQHAEGGKLW   73 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhhee-----cCCeEEEEEecCCCCCHH
Confidence            899999999999999999999987543     2334555555667999999999854     467899999999999999


Q ss_pred             hhhhcc
Q 042887          139 DWMHQS  144 (628)
Q Consensus       139 ~~l~~~  144 (628)
                      +++.+.
T Consensus        74 ~~l~~~   79 (237)
T cd05576          74 SHISKF   79 (237)
T ss_pred             HHHHHh
Confidence            988654

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.20  E-value=5e-07  Score=82.78  Aligned_cols=84  Identities=23%  Similarity=0.264  Sum_probs=67.2

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHH-HhhcCCCCcccccceeeeccccccceee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEA-LSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~-l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      +.+-...||.|+||.|++-.++.+|+..|||.++... .....++..|.+. |+.-..||||++++++.     .++.-|
T Consensus        65 ~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F-----~EGdcW  139 (361)
T KOG1006|consen   65 NLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALF-----SEGDCW  139 (361)
T ss_pred             hHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhh-----cCCcee
Confidence            3444567999999999999999999999999997653 3456788899885 55557999999999964     367779


Q ss_pred             eeecccccCCch
Q 042887          127 LIYEYMKCGSSE  138 (628)
Q Consensus       127 lv~e~~~~g~L~  138 (628)
                      +.||.|.- ++.
T Consensus       140 iCMELMd~-SlD  150 (361)
T KOG1006|consen  140 ICMELMDI-SLD  150 (361)
T ss_pred             eeHHHHhh-hHH
Confidence            99999974 443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=8.4e-08  Score=89.16  Aligned_cols=182  Identities=19%  Similarity=0.147  Sum_probs=93.7

Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccccc-ceeec-ccccccCCCCCEE
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH-FSGQV-KIDFNRLSNLSRL  312 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L  312 (628)
                      .||+|||+...|+..--..+...+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++... .--+..++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666655522122223345666666777777666666667777777777777653 22111 1124566677777


Q ss_pred             EccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeee
Q 042887          313 FLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFG  392 (628)
Q Consensus       313 ~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  392 (628)
                      +++++.+......  .....+  -++|..|++++..-.                  +..+    .+..-...+++|..||
T Consensus       266 NlsWc~l~~~~Vt--v~V~hi--se~l~~LNlsG~rrn------------------l~~s----h~~tL~~rcp~l~~LD  319 (419)
T KOG2120|consen  266 NLSWCFLFTEKVT--VAVAHI--SETLTQLNLSGYRRN------------------LQKS----HLSTLVRRCPNLVHLD  319 (419)
T ss_pred             CchHhhccchhhh--HHHhhh--chhhhhhhhhhhHhh------------------hhhh----HHHHHHHhCCceeeec
Confidence            7777665442111  000001  124444444443210                  0000    0111234566677777


Q ss_pred             ecccc-ccccCCcCCCCCCCCCeEecccCccccccCcc---ccCCCCCCeEecCCc
Q 042887          393 VEYNQ-LTGTIPHAIGELKNLQGLALVRNSLRGTIPDT---LGNLTLLNRLFLGFN  444 (628)
Q Consensus       393 l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~N  444 (628)
                      ++.|. ++......|..++.|++|.++.|..  .+|..   +...|+|.+|+..++
T Consensus       320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            76653 2322233456677788888877754  34443   455677888877654

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.18  E-value=8.2e-06  Score=88.17  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEee-cc-c------cchhhhHHHHHHHHhhcCCCCcccccceeeecc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN-LK-Q------KGAAKSFVTECEALSNVRHRNLIKIITVCSSID  118 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~-~~-~------~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~  118 (628)
                      ...|...+.||+|+||.||+|.+.  ++.+++|... +. .      ....+++.+|+++++.++|++++.....+..  
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~--~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~--  407 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYL--GRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVD--  407 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeec--CccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEe--
Confidence            445567889999999999999984  3344444322 11 1      1123568899999999999998876655432  


Q ss_pred             ccccceeeeeecccccCCchhhhh
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~  142 (628)
                         ....++||||++++++.+++.
T Consensus       408 ---~~~~~lv~E~~~g~~L~~~l~  428 (535)
T PRK09605        408 ---PEEKTIVMEYIGGKDLKDVLE  428 (535)
T ss_pred             ---CCCCEEEEEecCCCcHHHHHH
Confidence               446789999999999998875

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.13  E-value=7.3e-06  Score=78.70  Aligned_cols=80  Identities=28%  Similarity=0.429  Sum_probs=68.9

Q ss_pred             CceeEEEEEECCCCcEEEEEEeeccccch-hhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeecccccCCch
Q 042887           60 SFGFVYKGKLGETGTTVAVKVMNLKQKGA-AKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSE  138 (628)
Q Consensus        60 ~~g~V~~~~~~~~~~~~avK~~~~~~~~~-~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~  138 (628)
                      +||.||+|.+..+|+.+|+|+........ .+.+.+|++.+++++|+||+++++.+..     ....++++||++++++.
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~~l~~e~~~~~~L~   75 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFED-----EDKLYLVMEYCDGGDLF   75 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheee-----CCEEEEEEeCCCCCCHH
Confidence            58999999998889999999997654433 6789999999999999999999998653     57889999999999999


Q ss_pred             hhhhcc
Q 042887          139 DWMHQS  144 (628)
Q Consensus       139 ~~l~~~  144 (628)
                      +++...
T Consensus        76 ~~~~~~   81 (244)
T smart00220       76 DLLKKR   81 (244)
T ss_pred             HHHHhc
Confidence            988654

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.12  E-value=6.3e-06  Score=77.60  Aligned_cols=83  Identities=16%  Similarity=0.189  Sum_probs=64.0

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeecccc--------chhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      +.||+|++|.||+|.+  .|..+++|.......        .....+.+|++++..+.|++|.....++..     ....
T Consensus         2 ~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-----~~~~   74 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVD-----PENF   74 (211)
T ss_pred             cccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEe-----CCCC
Confidence            5799999999999998  677899997643221        122457889999999999988766555432     4567


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      +++|||++|+++.+++..
T Consensus        75 ~lv~e~~~G~~L~~~~~~   92 (211)
T PRK14879         75 IIVMEYIEGEPLKDLINS   92 (211)
T ss_pred             EEEEEEeCCcCHHHHHHh
Confidence            899999999999988754

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.09  E-value=7.2e-06  Score=72.38  Aligned_cols=59  Identities=25%  Similarity=0.281  Sum_probs=28.1

Q ss_pred             CCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCc
Q 042887          187 ALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFE  247 (628)
Q Consensus       187 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~  247 (628)
                      +...+||++|.+.  .-+.|..++.|.+|.|++|.|+.+.|.--.-+++|+.|.|.+|+|.
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            4445555555543  1223455555555555555555444433333444555555554443

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.08  E-value=7.6e-06  Score=76.23  Aligned_cols=82  Identities=20%  Similarity=0.282  Sum_probs=60.4

Q ss_pred             eeecCCceeEEEEEECCCCcEEEEEEeeccc-c-------chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           55 MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-K-------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        55 ~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~-------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .||+|+||.||+|.+  +|+.+++|...... .       ...+++.+|++++..+.|+++......+.     .....+
T Consensus         1 ~ig~G~~~~vy~~~~--~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~-----~~~~~~   73 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF--LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDV-----DPDNKT   73 (199)
T ss_pred             CCCCCceEEEEEeec--CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-----ECCCCE
Confidence            389999999999996  67889999864321 1       12356788999999998877554433322     245568


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      ++|||++|+++.+.+..
T Consensus        74 lv~e~~~g~~l~~~~~~   90 (199)
T TIGR03724        74 IVMEYIEGKPLKDVIEE   90 (199)
T ss_pred             EEEEEECCccHHHHHhh
Confidence            99999999999887754

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.03  E-value=8.2e-06  Score=72.05  Aligned_cols=106  Identities=15%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             CCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccc-cccccCCCCCCEE
Q 042887          210 RSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSL-PHSFSNASNLQVL  288 (628)
Q Consensus       210 ~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L  288 (628)
                      .+...+||++|.+.  --+.|..++.|.+|.|.+|.|+ .|...+...+++|+.|.|.+|.|.... -..++.++.|++|
T Consensus        42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            34566777777765  2334666777777777777776 666666555677777777777666321 1235566777777


Q ss_pred             Ecccccceeec---ccccccCCCCCEEEccCCc
Q 042887          289 DVYKNHFSGQV---KIDFNRLSNLSRLFLSKNN  318 (628)
Q Consensus       289 ~L~~N~i~~~~---~~~~~~l~~L~~L~L~~n~  318 (628)
                      .+-+|.++...   .-.+..+++|+.||...-.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            77777664321   1234567777777776543

>smart00090 RIO RIO-like kinase

Probab=98.03  E-value=1e-05  Score=77.17  Aligned_cols=87  Identities=14%  Similarity=0.080  Sum_probs=61.6

Q ss_pred             CCCCcCceeecCCceeEEEEE-ECCCCcEEEEEEeeccccc------------------------hhhhHHHHHHHHhhc
Q 042887           48 NNFSASNMIGQGSFGFVYKGK-LGETGTTVAVKVMNLKQKG------------------------AAKSFVTECEALSNV  102 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~-~~~~~~~~avK~~~~~~~~------------------------~~~~~~~E~~~l~~l  102 (628)
                      ..|++.+.||+|+||.||+|. +..+|+.||+|+++.....                        ....+.+|+..+.++
T Consensus        28 ~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L  107 (237)
T smart00090       28 ILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRL  107 (237)
T ss_pred             chHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            358899999999999999999 6678999999998753210                        012356899999999


Q ss_pred             CCCCcccccceeeeccccccceeeeeecccccCCchhhh
Q 042887          103 RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       103 ~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l  141 (628)
                      .+.. +.+.....      ....++||||++++++....
T Consensus       108 ~~~~-i~~p~~~~------~~~~~lV~E~~~g~~L~~~~  139 (237)
T smart00090      108 YEAG-VPVPKPIA------WRRNVLVMEFIGGDGLPAPR  139 (237)
T ss_pred             HhcC-CCCCeeeE------ecCceEEEEEecCCcccccc
Confidence            7532 22222211      12358999999998876554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.02  E-value=1.3e-05  Score=68.66  Aligned_cols=123  Identities=22%  Similarity=0.238  Sum_probs=43.7

Q ss_pred             hhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCC
Q 042887          180 DFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIP  259 (628)
Q Consensus       180 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  259 (628)
                      .+|.++++|+.+.+.. .+..+...+|..+++|+.+.+.++ +......+|.++++|+.+.+.. .+. .++...+...+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            3444555555555543 344444445555555555555443 4434444455554555555543 332 34444444445


Q ss_pred             CCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCC
Q 042887          260 NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNL  309 (628)
Q Consensus       260 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  309 (628)
                      +|+.+++..+ +..+....|.+. +|+.+.+.. .+..+....|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            5555555443 333344445444 555555443 3333344444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.01  E-value=3.6e-06  Score=56.02  Aligned_cols=16  Identities=31%  Similarity=0.567  Sum_probs=5.9

Q ss_pred             cCCCCCCEEECCCCcc
Q 042887          531 KTLKSIKELDLSRNNL  546 (628)
Q Consensus       531 ~~l~~L~~L~Ls~N~l  546 (628)
                      +++++|+.|++++|+|
T Consensus        21 ~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen   21 SNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TTCTTSSEEEETSSCC
T ss_pred             hCCCCCCEEEecCCCC
Confidence            3333333333333333

...

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.99  E-value=9.6e-07  Score=81.05  Aligned_cols=94  Identities=21%  Similarity=0.301  Sum_probs=72.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .+.+..+.||-|+||+||.+.++.+|+.||.|.+...  .-...+++.+|+.++...+|.||+..++.-...........
T Consensus        53 ~Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEi  132 (449)
T KOG0664|consen   53 QDIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQEL  132 (449)
T ss_pred             ccCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHH
Confidence            4566778999999999999999999999999988643  23455789999999999999999999888544222233456


Q ss_pred             eeeecccccCCchhhhh
Q 042887          126 ALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~  142 (628)
                      |.++|.+. .||+..|-
T Consensus       133 YV~TELmQ-SDLHKIIV  148 (449)
T KOG0664|consen  133 YVLTELMQ-SDLHKIIV  148 (449)
T ss_pred             HHHHHHHH-hhhhheec
Confidence            77778775 36665553

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=97.97  E-value=9.4e-07  Score=88.10  Aligned_cols=95  Identities=16%  Similarity=0.274  Sum_probs=79.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..+++....+|-|+||.|=.+........+|+|++++.   +....+.+..|-.+|.+.+.|.||++|..     |.+.+
T Consensus       419 l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrT-----frd~k  493 (732)
T KOG0614|consen  419 LSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRT-----FRDSK  493 (732)
T ss_pred             hhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHH-----hccch
Confidence            35667778899999999999888655556899998764   34455678899999999999999999998     56699


Q ss_pred             eeeeeecccccCCchhhhhcccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      +.||.||-|-||++...+++++.
T Consensus       494 yvYmLmEaClGGElWTiLrdRg~  516 (732)
T KOG0614|consen  494 YVYMLMEACLGGELWTILRDRGS  516 (732)
T ss_pred             hhhhhHHhhcCchhhhhhhhcCC
Confidence            99999999999999999987763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.95  E-value=2e-06  Score=93.62  Aligned_cols=200  Identities=20%  Similarity=0.223  Sum_probs=114.4

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccc-------------cccc--cCCCCCCEeecccccCcc-cC
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRI-------------PDSL--CQLRSLNYLSISENNFSC-KL  226 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------------~~~~--~~l~~L~~L~Ls~N~i~~-~~  226 (628)
                      +++..++.+.......-+.+.... |++|.|.+-......             ...+  ..-.+|++||+++...-. .-
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W  139 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW  139 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence            466666666666544444444444 677766643221100             0000  112578888887765321 11


Q ss_pred             CcCcc-CCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccccccee-ecccccc
Q 042887          227 PLSIW-NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG-QVKIDFN  304 (628)
Q Consensus       227 p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~  304 (628)
                      |..++ .+|+|+.|.+++=.+...=-..++.++|+|..||+|+.+++..  ..++.+++|+.|.+.+=.+.. ..-..+.
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence            22232 4788888888876664221234455688888888888888754  567788888888887766543 1223456


Q ss_pred             cCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhcccccc
Q 042887          305 RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKIT  365 (628)
Q Consensus       305 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  365 (628)
                      .+++|+.||+|.........-.-.+...-..+|+|+.||.++..+.......+-...++|+
T Consensus       218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            6888888888877654432111112223344677778887777776655555544333333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.95  E-value=9.7e-06  Score=53.94  Aligned_cols=36  Identities=36%  Similarity=0.541  Sum_probs=16.3

Q ss_pred             CCcEEecccCcccccccccccCCCCCCEEEcccccce
Q 042887          260 NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFS  296 (628)
Q Consensus       260 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  296 (628)
                      +|++|++++|+|+. +|..++++++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34444444444442 2333455555555555555544

...

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.94  E-value=3.5e-06  Score=83.85  Aligned_cols=119  Identities=17%  Similarity=0.219  Sum_probs=83.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-----C---CCcccccceeeecc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-----H---RNLIKIITVCSSID  118 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-----h---~nIv~l~~~~~~~~  118 (628)
                      ...|.+.+.+|.|.|++||+|.+..+.++||+|+++.. ....+....||.+|++++     |   .+||++++.+.-. 
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fkhs-  154 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHS-  154 (590)
T ss_pred             CceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceec-
Confidence            36788899999999999999999999999999998754 334567789999999884     2   4799999986531 


Q ss_pred             ccccceeeeeecccccCCchhhhhccc-cccccccCCccccCCcCcccEEE
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQSN-DKLEAGNLGLIQRLNLLKLEMID  168 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~  168 (628)
                      -.....++||+|+.- -.|..+|.... ..++...+-.++..-|..|.+|+
T Consensus       155 GpNG~HVCMVfEvLG-dnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH  204 (590)
T KOG1290|consen  155 GPNGQHVCMVFEVLG-DNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLH  204 (590)
T ss_pred             CCCCcEEEEEehhhh-hHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            234578899999863 35666766544 33333333334443334444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.92  E-value=3.3e-05  Score=77.60  Aligned_cols=134  Identities=18%  Similarity=0.302  Sum_probs=61.1

Q ss_pred             hccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCc-ccccccCCcccCCcchh
Q 042887          383 KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFN-NLQGNVPSSLGNCQNLM  461 (628)
Q Consensus       383 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~  461 (628)
                      ..+.+++.|++++|.++ .+|.   -..+|++|.++++.--...|..+  .++|++|++++| .+. ..|..      | 
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s------L-  114 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPES------V-  114 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccccc------c-
Confidence            33455566666666555 2231   12346666666533222444433  245666666665 333 23322      2 


Q ss_pred             cccceEEcCCCcCcc--ccchhhhccCCCCEeeCcCCc-Ccc-cCCccccCCCCCCeEECcCceeeeecCccccCCCCCC
Q 042887          462 TLSRLLDLSGNLLGG--SIPLEVGNLRNLAEFDLSENH-FSN-EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIK  537 (628)
Q Consensus       462 ~l~~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  537 (628)
                         +.|+++++....  .+|      ++|+.|.+.+++ ... ..|..+  .++|++|++++|... ..|..+.  .+|+
T Consensus       115 ---e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk  180 (426)
T PRK15386        115 ---RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQ  180 (426)
T ss_pred             ---ceEEeCCCCCcccccCc------chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCc
Confidence               445555544321  122      234555553322 110 011111  146677777666654 3343332  4666


Q ss_pred             EEECCCC
Q 042887          538 ELDLSRN  544 (628)
Q Consensus       538 ~L~Ls~N  544 (628)
                      .|+++.|
T Consensus       181 ~L~ls~n  187 (426)
T PRK15386        181 SITLHIE  187 (426)
T ss_pred             EEEeccc
Confidence            6666665

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=97.90  E-value=1.6e-05  Score=85.87  Aligned_cols=96  Identities=18%  Similarity=0.260  Sum_probs=63.1

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCC----CcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeee-cccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGET----GTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSS-IDFK  120 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~----~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-~~~~  120 (628)
                      ..++|++.+.||+|+||.||+|.+..+    +..||+|.+.....  .+.+..|  .+....+.++..+...+.. ....
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~--~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~  205 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA--VEIWMNE--RVRRACPNSCADFVYGFLEPVSSK  205 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch--hHHHHHH--HHHhhchhhHHHHHHhhhcccccc
Confidence            457899999999999999999999888    89999998754321  1112222  1222223333333222111 0013


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .....++|+||+.+++|.+++....
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~  230 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKE  230 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcC
Confidence            4678899999999999999987543

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=97.88  E-value=3.3e-05  Score=71.78  Aligned_cols=84  Identities=24%  Similarity=0.148  Sum_probs=60.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc----------------------chhhhHHHHHHHHhhcCCC
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK----------------------GAAKSFVTECEALSNVRHR  105 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----------------------~~~~~~~~E~~~l~~l~h~  105 (628)
                      ..|.+.+.||+|+||.||+|... +|+.||||++.....                      .....+.+|..++..+.|+
T Consensus        15 ~~~~~~~~i~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~   93 (198)
T cd05144          15 VVESLGNQIGVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEE   93 (198)
T ss_pred             chhhcCCccccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHc
Confidence            34888899999999999999884 799999998764320                      0112356788888888777


Q ss_pred             Cc--ccccceeeeccccccceeeeeecccccCCchhhh
Q 042887          106 NL--IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       106 nI--v~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l  141 (628)
                      ++  ...++         ....+++|||++++++.+..
T Consensus        94 ~i~v~~~~~---------~~~~~lv~e~~~g~~L~~~~  122 (198)
T cd05144          94 GFPVPKPID---------WNRHAVVMEYIDGVELYRVR  122 (198)
T ss_pred             CCCCCceee---------cCCceEEEEEeCCcchhhcc
Confidence            43  33322         23458999999998886543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=97.86  E-value=1.1e-05  Score=79.17  Aligned_cols=93  Identities=27%  Similarity=0.378  Sum_probs=78.8

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECC---CCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGE---TGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSID  118 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~---~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~  118 (628)
                      .....+.|...+.||+|.|+.||+|.+..   ..+.||+|.+...+.  ..++.+|+++|..+. +.||+++.++     
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~--p~ri~~El~~L~~~gG~~ni~~~~~~-----  103 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS--PSRILNELEMLYRLGGSDNIIKLNGC-----  103 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC--chHHHHHHHHHHHhccchhhhcchhh-----
Confidence            44556789999999999999999999877   678999999976543  467899999999995 8999999998     


Q ss_pred             ccccceeeeeecccccCCchhhhh
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~  142 (628)
                      +...+...+|+||.+.-+..++..
T Consensus       104 ~rnnd~v~ivlp~~~H~~f~~l~~  127 (418)
T KOG1167|consen  104 FRNNDQVAIVLPYFEHDRFRDLYR  127 (418)
T ss_pred             hccCCeeEEEecccCccCHHHHHh
Confidence            667899999999999877776654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.84  E-value=3.7e-05  Score=65.91  Aligned_cols=124  Identities=19%  Similarity=0.206  Sum_probs=76.3

Q ss_pred             cccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCC
Q 042887          156 IQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISS  235 (628)
Q Consensus       156 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~  235 (628)
                      ..+.+.++|+.+.+.. .+..+...+|.++++|+.+.+..+ +..+...+|.++++|+.+.+.+ .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3456777899999885 677777888999999999999885 7767778899998999999976 555466778888999


Q ss_pred             CCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCC
Q 042887          236 LEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQ  286 (628)
Q Consensus       236 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  286 (628)
                      |+.+++..+ +. .++...+... +|+.+.+.. .++.+....|.++++|+
T Consensus        83 l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   83 LKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            999999876 65 7778888776 999999886 55556777888887774

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.80  E-value=8.4e-05  Score=74.71  Aligned_cols=137  Identities=15%  Similarity=0.143  Sum_probs=80.4

Q ss_pred             CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccc-cCcccCCcCccCCCCCC
Q 042887          159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN-NFSCKLPLSIWNISSLE  237 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~i~~~~p~~~~~l~~L~  237 (628)
                      ..+.+++.|++++|.++. +|.   --.+|++|.++++.--...|+.+.  ++|++|++++| .+. .+|      .+|+
T Consensus        49 ~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe  115 (426)
T PRK15386         49 EEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVR  115 (426)
T ss_pred             HHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccc
Confidence            345678899999988774 452   224689999987443336666553  57889999888 554 445      3477


Q ss_pred             EEEeecccCcccCChhhhhCCCCCcEEecccCccc-c-cccccccCCCCCCEEEcccccceeecccccccCCCCCEEEcc
Q 042887          238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFT-G-SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLS  315 (628)
Q Consensus       238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  315 (628)
                      .|+++.+... .++.    -.++|+.|.+.+++.. . ..|..+  -++|++|++++|.... .|..+.  .+|+.|.++
T Consensus       116 ~L~L~~n~~~-~L~~----LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        116 SLEIKGSATD-SIKN----VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-LPEKLP--ESLQSITLH  185 (426)
T ss_pred             eEEeCCCCCc-cccc----CcchHhheecccccccccccccccc--CCcccEEEecCCCccc-Cccccc--ccCcEEEec
Confidence            7777776643 2221    1235666766443211 0 111111  1568888888777542 233333  477778777


Q ss_pred             CCc
Q 042887          316 KNN  318 (628)
Q Consensus       316 ~n~  318 (628)
                      .+.
T Consensus       186 ~n~  188 (426)
T PRK15386        186 IEQ  188 (426)
T ss_pred             ccc
Confidence            653

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=97.77  E-value=1.2e-05  Score=77.78  Aligned_cols=92  Identities=23%  Similarity=0.367  Sum_probs=72.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC--CC----Ccccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR--HR----NLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~--h~----nIv~l~~~~~~~~~~  120 (628)
                      ..+|.+.+.+|+|.||+|..+.+.+++..||+|+++...+ ..++..-|+++++++.  .|    -+|++.++     |+
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~k-YreAa~iEi~vLqki~~~DP~g~~rcv~m~~w-----Fd  161 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDK-YREAALIEIEVLQKINESDPNGKFRCVQMRDW-----FD  161 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCCCceEEEeeehh-----hh
Confidence            6789999999999999999999999999999999976433 3456678999999994  23    24555555     56


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..+..++|+|.+ |-++.++++.++
T Consensus       162 yrghiCivfell-G~S~~dFlk~N~  185 (415)
T KOG0671|consen  162 YRGHICIVFELL-GLSTFDFLKENN  185 (415)
T ss_pred             ccCceEEEEecc-ChhHHHHhccCC
Confidence            688899999987 348889987644

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.75  E-value=1e-05  Score=76.85  Aligned_cols=99  Identities=18%  Similarity=0.294  Sum_probs=75.9

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      -.|.+.+.||+|+||+.+.|...-++++||||.-...+  .+.+...|.+..+.+. .+.|.+++.+.     .....-.
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS--~APQLrdEYr~YKlL~g~~GIP~vYYFG-----qeG~~Ni  100 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS--EAPQLRDEYRTYKLLGGTEGIPQVYYFG-----QEGKYNI  100 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccC--CcchHHHHHHHHHHHcCCCCCCceeeec-----cccchhh
Confidence            47999999999999999999999999999999876543  3456677777777664 68888887763     3466778


Q ss_pred             eeecccccCCchhhhhccccccccccCC
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKLEAGNLG  154 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~~~~~~  154 (628)
                      ||+|.. |-+|++.+.-.+.......+.
T Consensus       101 LVidLL-GPSLEDLFD~CgR~FSvKTV~  127 (449)
T KOG1165|consen  101 LVIDLL-GPSLEDLFDLCGRRFSVKTVA  127 (449)
T ss_pred             hhhhhh-CcCHHHHHHHhcCcccHHhHH
Confidence            899975 568888887766666544443

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.69  E-value=5.3e-05  Score=68.82  Aligned_cols=96  Identities=21%  Similarity=0.306  Sum_probs=71.4

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCC-CCcccccceeeeccccccce
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRH-RNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h-~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ...+|.+.+.||.|+||.+|.|....+|+.||||.-+...  ...+...|..+..-+++ ..|..+..+     ..+...
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a--~hpqL~yEskvY~iL~~g~GiP~i~~y-----~~e~~y   85 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA--KHPQLLYESKVYRILQGGVGIPHIRHY-----GTEKDY   85 (341)
T ss_pred             eccceEEEEeecCCchhheeeeeeccCCceEEEEeecccC--CCcchhHHHHHHHHhccCCCCchhhhh-----cccccc
Confidence            3578999999999999999999999999999999865432  23567788888777764 455555444     234677


Q ss_pred             eeeeecccccCCchhhhhccccccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      ..+|||.. |-+|++.+.-.....+
T Consensus        86 nvlVMdLL-GPsLEdLfnfC~R~ft  109 (341)
T KOG1163|consen   86 NVLVMDLL-GPSLEDLFNFCSRRFT  109 (341)
T ss_pred             ceeeeecc-CccHHHHHHHHhhhhh
Confidence            78999975 5688887765554444

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=97.67  E-value=4.1e-05  Score=67.91  Aligned_cols=93  Identities=15%  Similarity=0.225  Sum_probs=72.0

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhc-CCCCcccccceeeecccc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~  120 (628)
                      ...+.++......||+|+||.|-+-++..+|...|+|.+... ..+..++..+|+++..+. ..|.+|.++++     +.
T Consensus        41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa-----~~  115 (282)
T KOG0984|consen   41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGA-----LF  115 (282)
T ss_pred             cccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehh-----hh
Confidence            344445556667899999999999999999999999999754 334556788899875544 69999999998     44


Q ss_pred             ccceeeeeecccccCCchhhh
Q 042887          121 GVDFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l  141 (628)
                      .+...++.||.|.. ++..+-
T Consensus       116 regdvwIcME~M~t-Sldkfy  135 (282)
T KOG0984|consen  116 REGDVWICMELMDT-SLDKFY  135 (282)
T ss_pred             ccccEEEeHHHhhh-hHHHHH
Confidence            58889999999974 454443

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=97.65  E-value=2.3e-05  Score=83.24  Aligned_cols=83  Identities=28%  Similarity=0.365  Sum_probs=66.4

Q ss_pred             CcCceeecCCcee-EEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccceeeee
Q 042887           51 SASNMIGQGSFGF-VYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        51 ~~~~~iG~G~~g~-V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      .-.+++|.|+-|+ ||+|.+  .|+.||||++-...   .....||+..++.-+ |||||+++....     +..+.|+.
T Consensus       512 ~~~eilG~Gs~Gt~Vf~G~y--e~R~VAVKrll~e~---~~~A~rEi~lL~eSD~H~NviRyyc~E~-----d~qF~YIa  581 (903)
T KOG1027|consen  512 SPKEILGYGSNGTVVFRGVY--EGREVAVKRLLEEF---FDFAQREIQLLQESDEHPNVIRYYCSEQ-----DRQFLYIA  581 (903)
T ss_pred             ccHHHcccCCCCcEEEEEee--CCceehHHHHhhHh---HHHHHHHHHHHHhccCCCceEEEEeecc-----CCceEEEE
Confidence            3346788888765 599999  78899999875432   345679999998885 999999998754     48899999


Q ss_pred             ecccccCCchhhhhcc
Q 042887          129 YEYMKCGSSEDWMHQS  144 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~  144 (628)
                      .|.|.+ +|.+++...
T Consensus       582 lELC~~-sL~dlie~~  596 (903)
T KOG1027|consen  582 LELCAC-SLQDLIESS  596 (903)
T ss_pred             ehHhhh-hHHHHHhcc
Confidence            999986 899999775

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=97.62  E-value=0.00011  Score=64.66  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=62.5

Q ss_pred             cCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCC--CCcccccceeeeccccccceeeeee
Q 042887           52 ASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRH--RNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        52 ~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h--~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.+.+|+|.++.||++...  ++.+++|.......  ...+.+|+.++..+.|  ..+.+++...     ...+..+++|
T Consensus         2 ~~~~i~~g~~~~v~~~~~~--~~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~-----~~~~~~~~v~   72 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTK--DEDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASG-----ESDGWSYLLM   72 (155)
T ss_pred             cceecccccccceEEEEec--CCeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEc-----CCCCccEEEE
Confidence            3577999999999999983  47899998865433  4678899999999976  4777777663     3346789999


Q ss_pred             cccccCCchhh
Q 042887          130 EYMKCGSSEDW  140 (628)
Q Consensus       130 e~~~~g~L~~~  140 (628)
                      ||++++.+..+
T Consensus        73 e~~~g~~~~~~   83 (155)
T cd05120          73 EWIEGETLDEV   83 (155)
T ss_pred             EecCCeecccC
Confidence            99998877643

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=97.60  E-value=3.2e-05  Score=71.48  Aligned_cols=99  Identities=18%  Similarity=0.251  Sum_probs=72.8

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccceeee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      .+....+|.|+.|.||+++++.+|...|||.+.+.. ....+++...++++..-. .|.||+.++++.     .+...++
T Consensus        94 l~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi-----~n~dV~I  168 (391)
T KOG0983|consen   94 LENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFI-----TNTDVFI  168 (391)
T ss_pred             hhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEe-----eCchHHH
Confidence            344566999999999999999999999999998753 455678888888776664 899999999955     4677888


Q ss_pred             eecccccCCchhhhhccccccccccCC
Q 042887          128 IYEYMKCGSSEDWMHQSNDKLEAGNLG  154 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~~~~~~~~~~  154 (628)
                      .||.|.- -.+..+++....+++..+|
T Consensus       169 cMelMs~-C~ekLlkrik~piPE~ilG  194 (391)
T KOG0983|consen  169 CMELMST-CAEKLLKRIKGPIPERILG  194 (391)
T ss_pred             HHHHHHH-HHHHHHHHhcCCchHHhhh
Confidence            9998753 2333444333344443333

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.60  E-value=3.4e-05  Score=77.74  Aligned_cols=92  Identities=18%  Similarity=0.259  Sum_probs=70.2

Q ss_pred             CCCcCceeecCCceeEEEEEECCCC-cEEEEEEeeccccchhhhHHHHHHHHhhcCC----CCcccccceeeeccccccc
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETG-TTVAVKVMNLKQKGAAKSFVTECEALSNVRH----RNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~-~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h----~nIv~l~~~~~~~~~~~~~  123 (628)
                      .|.+.+.||+|+||.||.|.+..++ +.+|+|............+..|..++..+..    +++.++++...    ....
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~----~~~~   94 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGR----STED   94 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEecc----CCCc
Confidence            7999999999999999999987664 5789998876544333377888888888863    57778877731    3467


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +.|+||+.+ |.+|.+......
T Consensus        95 ~~~iVM~l~-G~sL~dl~~~~~  115 (322)
T KOG1164|consen   95 FNFIVMSLL-GPSLEDLRKRNP  115 (322)
T ss_pred             eeEEEEecc-CccHHHHHHhCC
Confidence            889999976 568888765444

>PHA02882 putative serine/threonine kinase; Provisional

Probab=97.59  E-value=0.00018  Score=71.61  Aligned_cols=93  Identities=16%  Similarity=0.274  Sum_probs=58.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCC---CcEEEEEEeeccccch-----------hhhHHHHHHHHhhcCCCCcccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGET---GTTVAVKVMNLKQKGA-----------AKSFVTECEALSNVRHRNLIKIIT  112 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~nIv~l~~  112 (628)
                      .++|++.+.||+|+||.||+|.+..+   +..+|+|+........           ......+...+..+.|++++++++
T Consensus        11 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   90 (294)
T PHA02882         11 GKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYG   90 (294)
T ss_pred             CCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEE
Confidence            36799999999999999999999777   6677887654332111           011223334556678999999998


Q ss_pred             eeeeccccccceeeeeecccccCCchhhh
Q 042887          113 VCSSIDFKGVDFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l  141 (628)
                      ++... .......++++|++.. ++.+.+
T Consensus        91 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~  117 (294)
T PHA02882         91 CGSFK-RCRMYYRFILLEKLVE-NTKEIF  117 (294)
T ss_pred             eeeEe-cCCceEEEEEEehhcc-CHHHHH
Confidence            75431 0111245667776543 344333

>PRK12274 serine/threonine protein kinase; Provisional

Probab=97.47  E-value=0.00028  Score=64.57  Aligned_cols=80  Identities=10%  Similarity=-0.009  Sum_probs=59.1

Q ss_pred             CcCceeecCCceeEEEEEECCCCcEEEEEEeeccccch----hhhHHHHHHHHhhcC-CCCcccccceeeecccccccee
Q 042887           51 SASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA----AKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        51 ~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~----~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .+...+++|+||+||.+..  .+..++.+.+.....+.    ...+.+|+++|+++. |++|++++++         ...
T Consensus         5 ~~~~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~---------~~~   73 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW---------DGR   73 (218)
T ss_pred             ccceeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE---------cCE
Confidence            3557899999999997766  56777766665433211    125789999999996 5888888775         235


Q ss_pred             eeeecccccCCchhhh
Q 042887          126 ALIYEYMKCGSSEDWM  141 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l  141 (628)
                      +++|||+.|.+|.+..
T Consensus        74 ~lvmeyI~G~~L~~~~   89 (218)
T PRK12274         74 HLDRSYLAGAAMYQRP   89 (218)
T ss_pred             EEEEeeecCccHHhhh
Confidence            8999999998886543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.46  E-value=6e-05  Score=82.34  Aligned_cols=162  Identities=18%  Similarity=0.205  Sum_probs=106.9

Q ss_pred             hCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccC--C-----------cCc--cCCCCCCEEEeecccCc
Q 042887          183 ANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKL--P-----------LSI--WNISSLEIISLHSNRFE  247 (628)
Q Consensus       183 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~--p-----------~~~--~~l~~L~~L~L~~n~l~  247 (628)
                      ...-++...++.+.......-....... |+.|.|.+-......  .           ..+  ..-.+|++||+++...-
T Consensus        57 ~~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~  135 (699)
T KOG3665|consen   57 IRKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELF  135 (699)
T ss_pred             hhhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchh
Confidence            3444667777776665533333344444 777777654322100  0           001  12357999999987643


Q ss_pred             -ccCChhhhhCCCCCcEEecccCccccc-ccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCC
Q 042887          248 -GSLPLNIGFNIPNVNFLSVGQNNFTGS-LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTS  325 (628)
Q Consensus       248 -~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  325 (628)
                       ..-|..++..+|+|+.|.+++=.+... ......++++|..||+|+.+++..  ..++.+++|+.|.+.+-.+..    
T Consensus       136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~----  209 (699)
T KOG3665|consen  136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFES----  209 (699)
T ss_pred             hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCc----
Confidence             233556677799999999998766532 234467889999999999999855  457788999999888766643    


Q ss_pred             CccccccccCCCCCceeecccCCcccc
Q 042887          326 DLDFLTLLTNCSQMEMLYLNTNKFGGV  352 (628)
Q Consensus       326 ~~~~~~~l~~~~~L~~L~l~~n~~~~~  352 (628)
                       ......+.++++|+.||+|..+....
T Consensus       210 -~~~l~~LF~L~~L~vLDIS~~~~~~~  235 (699)
T KOG3665|consen  210 -YQDLIDLFNLKKLRVLDISRDKNNDD  235 (699)
T ss_pred             -hhhHHHHhcccCCCeeeccccccccc
Confidence             24455677888999999988876443

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=97.45  E-value=7.6e-05  Score=77.28  Aligned_cols=92  Identities=21%  Similarity=0.213  Sum_probs=75.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++.|.+...+|.|+|+.|-++.+..+++.+|+|++.+..    ..-.+|+.++... +||||++.++++     ++....
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~-----~~~~~~  391 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVY-----EDGKEI  391 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeeccee-----cCCcee
Confidence            578899889999999999999999999999999997652    2234566666555 699999999995     458999


Q ss_pred             eeeecccccCCchhhhhccccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      |+|||.+.||.+.+.+......
T Consensus       392 ~~v~e~l~g~ell~ri~~~~~~  413 (612)
T KOG0603|consen  392 YLVMELLDGGELLRRIRSKPEF  413 (612)
T ss_pred             eeeehhccccHHHHHHHhcchh
Confidence            9999999999998877655433

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.42  E-value=0.00015  Score=76.71  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=30.7

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeec
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL   83 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~   83 (628)
                      ..|+. +.+|+|++|.||+|+.+.+|+.||||+.+.
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP  154 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRP  154 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCc
Confidence            45666 789999999999999987799999999964

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=97.26  E-value=0.00026  Score=68.89  Aligned_cols=100  Identities=19%  Similarity=0.329  Sum_probs=73.5

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCC-----cEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceee
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETG-----TTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCS  115 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~-----~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~  115 (628)
                      +....+.+++....+-+|.||.||+|.+++-.     +.|-+|.++.. ++-+...+.+|.-.+..+.|||+..+.+++.
T Consensus       278 ~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~i  357 (563)
T KOG1024|consen  278 ELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSI  357 (563)
T ss_pred             hhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEe
Confidence            33445667888888999999999999886432     22445555332 3334567889999999999999999999876


Q ss_pred             eccccccceeeeeecccccCCchhhhhccc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .    +....+.++.++.-|.|..|+...+
T Consensus       358 e----~~~~P~V~y~~~~~gNLK~FL~~Cr  383 (563)
T KOG1024|consen  358 E----DYATPFVLYPATGVGNLKSFLQICR  383 (563)
T ss_pred             e----ccCcceEEEeccCcchHHHHHHHhc
Confidence            3    4556677778888899999987433

>cd05119 RIO RIO kinase family, catalytic domain

Probab=97.25  E-value=0.00066  Score=62.36  Aligned_cols=31  Identities=35%  Similarity=0.407  Sum_probs=27.0

Q ss_pred             CceeecCCceeEEEEEECCCCcEEEEEEeecc
Q 042887           53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK   84 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~   84 (628)
                      .+.||+|+||.||+|.+. +|+.||||+....
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~   32 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-DGEPVAVKIYRTG   32 (187)
T ss_pred             CcccccccceeEEEEECC-CCCEEEEEEEecC
Confidence            467999999999999986 7899999998653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.21  E-value=0.0003  Score=78.22  Aligned_cols=92  Identities=23%  Similarity=0.353  Sum_probs=66.9

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC---CCCcccccceeeecc
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR---HRNLIKIITVCSSID  118 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~~~  118 (628)
                      +.+...+.|.+.+.+|+|+||.||+|.... |+.||+|+-+....|.   |.--.+++.+|+   -+.|..+..+..   
T Consensus       692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~-~~~~alK~e~P~~~WE---fYI~~q~~~RLk~~~~~~~~~~~~a~~---  764 (974)
T KOG1166|consen  692 EFEVGGEKFCISKEIGEGSYGSVYVATHSN-GKLVALKVEKPPNPWE---FYICLQVMERLKPQMLPSIMHISSAHV---  764 (974)
T ss_pred             eeeecceeEEEEeeeccccceEEEEeecCC-CcEEEEEeecCCCcee---eeehHHHHHhhchhhhcchHHHHHHHc---
Confidence            334455789999999999999999999966 9999999987665543   222223455555   245555555532   


Q ss_pred             ccccceeeeeecccccCCchhhhh
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~  142 (628)
                        ..+.-++|+||.+.|+|.+++.
T Consensus       765 --~~~~S~lv~ey~~~Gtlld~~N  786 (974)
T KOG1166|consen  765 --FQNASVLVSEYSPYGTLLDLIN  786 (974)
T ss_pred             --cCCcceeeeeccccccHHHhhc
Confidence              2556679999999999999987

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.19  E-value=0.00023  Score=65.94  Aligned_cols=82  Identities=29%  Similarity=0.371  Sum_probs=41.6

Q ss_pred             hhccCCCCEeeCcCC--cCcccCCccccCCCCCCeEECcCceeeeecCcc---ccCCCCCCEEECCCCcccccCc---hh
Q 042887          482 VGNLRNLAEFDLSEN--HFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLS---LKTLKSIKELDLSRNNLSGQIP---KY  553 (628)
Q Consensus       482 ~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---~~  553 (628)
                      |..+++|++|.+|.|  ++.+..+.....+|+|++|++++|+|+.  +..   +..+++|..||+.+|..+...-   ..
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v  138 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKV  138 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence            334556666666666  4444333334444666666666666652  222   3344556666666666553211   12


Q ss_pred             hhcccCCCeEec
Q 042887          554 LENLLFLAYLNL  565 (628)
Q Consensus       554 ~~~l~~L~~L~l  565 (628)
                      |.-+++|++||-
T Consensus       139 f~ll~~L~~LD~  150 (260)
T KOG2739|consen  139 FLLLPSLKYLDG  150 (260)
T ss_pred             HHHhhhhccccc
Confidence            444555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.05  E-value=0.00037  Score=64.60  Aligned_cols=85  Identities=25%  Similarity=0.228  Sum_probs=45.6

Q ss_pred             CCcCeeeeccccccccCCcCCCCCCCCCeEecccC--ccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcc
Q 042887          386 VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRN--SLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTL  463 (628)
Q Consensus       386 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l  463 (628)
                      ..|+.+++.+..++.  -..|-.+++|+.|.++.|  ++.+-++.....+++|+++++++|+|..  +.++..++.|..+
T Consensus        43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence            344444444444431  123455667777777777  5554444444555777777777777752  4444444444333


Q ss_pred             cceEEcCCCcCc
Q 042887          464 SRLLDLSGNLLG  475 (628)
Q Consensus       464 ~~~L~Ls~N~l~  475 (628)
                       ..|++.+|..+
T Consensus       119 -~~Ldl~n~~~~  129 (260)
T KOG2739|consen  119 -KSLDLFNCSVT  129 (260)
T ss_pred             -hhhhcccCCcc
Confidence             45555555544

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.00  E-value=0.0018  Score=65.23  Aligned_cols=88  Identities=28%  Similarity=0.460  Sum_probs=71.7

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc---chhhhHHHHHHHHhhcCCC-Ccccccceeeecccccccee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---GAAKSFVTECEALSNVRHR-NLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~E~~~l~~l~h~-nIv~l~~~~~~~~~~~~~~~  125 (628)
                      |.+.+.+|.|+||.||++.+.   ..+|+|.+.....   .....+.+|+..++.+.|+ +|+++.+...     .....
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~-----~~~~~   73 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQ-----DEGSL   73 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEe-----cCCEE
Confidence            677788999999999999996   7789999976532   2467899999999999988 7999988853     34557


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +++++++.++++.+++....
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~   93 (384)
T COG0515          74 YLVMEYVDGGSLEDLLKKIG   93 (384)
T ss_pred             EEEEecCCCCcHHHHHHhcc
Confidence            99999999999997665443

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=96.93  E-value=0.0013  Score=68.85  Aligned_cols=85  Identities=18%  Similarity=0.162  Sum_probs=54.0

Q ss_pred             CceeecCCceeEEEEEECCCCcEEEEEEeeccccch----------------------------------------hhhH
Q 042887           53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA----------------------------------------AKSF   92 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~----------------------------------------~~~~   92 (628)
                      .+.||.|++|.||+|+. .+|+.||||+.+..-...                                        .-.|
T Consensus       122 ~~plasaSigQVh~A~l-~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf  200 (437)
T TIGR01982       122 EKPLAAASIAQVHRARL-VDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDL  200 (437)
T ss_pred             CcceeeeehhheEEEEe-cCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCH
Confidence            36799999999999998 478999999986431000                                        0024


Q ss_pred             HHHHHHHhhcC----CCCcccccceeeeccccccceeeeeecccccCCchhhhh
Q 042887           93 VTECEALSNVR----HRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus        93 ~~E~~~l~~l~----h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~  142 (628)
                      .+|+..+.++.    |..-+.+-.++.    +.....++||||++|+++.+...
T Consensus       201 ~~Ea~n~~~~~~~~~~~~~v~vP~v~~----~~~~~~vLvmE~i~G~~L~~~~~  250 (437)
T TIGR01982       201 RREAANASELGENFKNDPGVYVPEVYW----DRTSERVLTMEWIDGIPLSDIAA  250 (437)
T ss_pred             HHHHHHHHHHHHhcCCCCCEEeCCEeh----hhcCCceEEEEeECCcccccHHH
Confidence            45555555442    222222222221    12445789999999999988754

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=7.1e-05  Score=69.44  Aligned_cols=82  Identities=17%  Similarity=0.301  Sum_probs=40.9

Q ss_pred             CCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeeccc-ccccCCCCCE
Q 042887          233 ISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKI-DFNRLSNLSR  311 (628)
Q Consensus       233 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~  311 (628)
                      +.+.+.|++-++.++ .  ..+..+|+.|++|.||-|+|+..  ..|..+++|++|+|..|.|.++..- -+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            344555666666655 2  23344566666666666666533  2344555555555555555433211 1234444555


Q ss_pred             EEccCCcC
Q 042887          312 LFLSKNNL  319 (628)
Q Consensus       312 L~L~~n~l  319 (628)
                      |+|..|.-
T Consensus        93 LWL~ENPC  100 (388)
T KOG2123|consen   93 LWLDENPC  100 (388)
T ss_pred             HhhccCCc
Confidence            55544443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=7.9e-05  Score=69.13  Aligned_cols=100  Identities=20%  Similarity=0.156  Sum_probs=55.6

Q ss_pred             CCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCccccccc-ccccCCCCCCE
Q 042887          209 LRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLP-HSFSNASNLQV  287 (628)
Q Consensus       209 l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~  287 (628)
                      +.+.+.|+.-++.+.++  .....++.|+.|.||-|+|+ .+...  ..+++|++|+|..|.|.+... ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~pl--~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAPL--QRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchhH--HHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            45566666666666532  22345666777777777766 33221  236667777777776664322 23566666777


Q ss_pred             EEcccccceeeccc-----ccccCCCCCEEE
Q 042887          288 LDVYKNHFSGQVKI-----DFNRLSNLSRLF  313 (628)
Q Consensus       288 L~L~~N~i~~~~~~-----~~~~l~~L~~L~  313 (628)
                      |.|..|.-.+..+.     .+..+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77766654433222     233456666554

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=96.58  E-value=0.0034  Score=55.10  Aligned_cols=79  Identities=16%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             CcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCccc-ccceeeeccccccceeeeee
Q 042887           51 SASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIK-IITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        51 ~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~-l~~~~~~~~~~~~~~~~lv~  129 (628)
                      ...+.||+|.+|.||.|.+  .|..+|+|+-...+  ....+..|++++..+.-..+.. ++.+         +..++.|
T Consensus        25 ~v~~~L~KG~~s~Vyl~~~--~~~~~a~Kvrr~ds--~r~~l~kEakiLeil~g~~~~p~vy~y---------g~~~i~m   91 (201)
T COG2112          25 RVEKELAKGTTSVVYLGEW--RGGEVALKVRRRDS--PRRNLEKEAKILEILAGEGVTPEVYFY---------GEDFIRM   91 (201)
T ss_pred             hhhhhhhcccccEEEEeec--cCceEEEEEecCCc--chhhHHHHHHHHHHhhhcCCCceEEEe---------chhhhhh
Confidence            3457799999999999999  67789999865433  3467889999999887655543 3333         2334569


Q ss_pred             cccccCCchhhhh
Q 042887          130 EYMKCGSSEDWMH  142 (628)
Q Consensus       130 e~~~~g~L~~~l~  142 (628)
                      ||..|-.|.+...
T Consensus        92 e~i~G~~L~~~~~  104 (201)
T COG2112          92 EYIDGRPLGKLEI  104 (201)
T ss_pred             hhhcCcchhhhhh
Confidence            9999877766544

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=96.50  E-value=0.0024  Score=64.70  Aligned_cols=96  Identities=17%  Similarity=0.311  Sum_probs=73.2

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC------CCCcccccceeeeccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR------HRNLIKIITVCSSIDF  119 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~------h~nIv~l~~~~~~~~~  119 (628)
                      .-..|.+....|+|-|+.|.+|.+...|..||||++..... -.+.=.+|+++|++|.      ..|+++++..     |
T Consensus       430 LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~-M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~-----F  503 (752)
T KOG0670|consen  430 LDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV-MHKTGLKELEILKKLNDADPEDKFHCLRLFRH-----F  503 (752)
T ss_pred             hcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH-HhhhhhHHHHHHHHhhccCchhhhHHHHHHHH-----h
Confidence            34567888889999999999999999999999999976432 1233468999999994      2478888777     5


Q ss_pred             cccceeeeeecccccCCchhhhhcccccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      ......+||+|-.. ..|.+.+++-+.+.
T Consensus       504 ~hknHLClVFE~Ls-lNLRevLKKyG~nv  531 (752)
T KOG0670|consen  504 KHKNHLCLVFEPLS-LNLREVLKKYGRNV  531 (752)
T ss_pred             hhcceeEEEehhhh-chHHHHHHHhCccc
Confidence            56788999999764 35777776665443

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=96.31  E-value=0.011  Score=56.48  Aligned_cols=87  Identities=9%  Similarity=0.036  Sum_probs=58.7

Q ss_pred             ceee-cCCceeEEEEEECCCCcEEEEEEeeccc-------------cchhhhHHHHHHHHhhcCCCCc--ccccceeeec
Q 042887           54 NMIG-QGSFGFVYKGKLGETGTTVAVKVMNLKQ-------------KGAAKSFVTECEALSNVRHRNL--IKIITVCSSI  117 (628)
Q Consensus        54 ~~iG-~G~~g~V~~~~~~~~~~~~avK~~~~~~-------------~~~~~~~~~E~~~l~~l~h~nI--v~l~~~~~~~  117 (628)
                      ..+| .|+.|.||.+..  .+..+++|......             .....++.+|++++..+.|++|  ++.++.....
T Consensus        37 ~~lg~~~g~gtv~~v~~--~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT--PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             ceeecCCCCccEEEEEe--CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            4577 788888998887  47789999885311             1223567899999999998775  5555543210


Q ss_pred             cccccceeeeeeccccc-CCchhhhhc
Q 042887          118 DFKGVDFKALIYEYMKC-GSSEDWMHQ  143 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~-g~L~~~l~~  143 (628)
                       .......++|||+++| .++.+++.+
T Consensus       115 -~~~~~~~~lV~e~l~G~~~L~~~l~~  140 (239)
T PRK01723        115 -HGLFYRADILIERIEGARDLVALLQE  140 (239)
T ss_pred             -cCcceeeeEEEEecCCCCCHHHHHhc
Confidence             0011233599999997 688887753

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=96.01  E-value=0.014  Score=55.14  Aligned_cols=85  Identities=13%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeecccc-chhhhHHHHHHHHhhcCCC--Ccccccceeeeccccccceeeeeec
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-GAAKSFVTECEALSNVRHR--NLIKIITVCSSIDFKGVDFKALIYE  130 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~E~~~l~~l~h~--nIv~l~~~~~~~~~~~~~~~~lv~e  130 (628)
                      +.+|.|.++.||++... +|+.+++|....... .....+.+|+++++.+.+.  .+.+++.......  .....+++||
T Consensus         4 ~~l~~G~~n~~~~v~~~-~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~--~~~~~~~v~e   80 (223)
T cd05154           4 RQLSGGQSNLTYLLTAG-GGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPS--VLGTPFYVME   80 (223)
T ss_pred             eecCCCccceEEEEEec-CCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCC--ccCCceEEEE
Confidence            56899999999999884 367899998765332 2345788999999998753  3455655532210  1135689999


Q ss_pred             ccccCCchhhh
Q 042887          131 YMKCGSSEDWM  141 (628)
Q Consensus       131 ~~~~g~L~~~l  141 (628)
                      |++|+++.+.+
T Consensus        81 ~i~G~~l~~~~   91 (223)
T cd05154          81 RVDGRVLRDRL   91 (223)
T ss_pred             EeCCEecCCCC
Confidence            99998887654

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=95.98  E-value=0.0012  Score=61.08  Aligned_cols=88  Identities=22%  Similarity=0.446  Sum_probs=69.1

Q ss_pred             CcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887           51 SASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        51 ~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      .+.-.+.+..-|..|+|++  .|..+++|++...  .....+.|..|...++-..||||..++++|.+     .....++
T Consensus       193 nl~tkl~e~hsgelwrgrw--qgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacns-----ppnlv~i  265 (448)
T KOG0195|consen  193 NLITKLAESHSGELWRGRW--QGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNS-----PPNLVII  265 (448)
T ss_pred             hhhhhhccCCCcccccccc--cCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccC-----CCCceEe
Confidence            3445577888899999999  4555666766432  33455778888888888899999999999865     6778899


Q ss_pred             ecccccCCchhhhhccc
Q 042887          129 YEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~~  145 (628)
                      ..||+.|+|+..++...
T Consensus       266 sq~mp~gslynvlhe~t  282 (448)
T KOG0195|consen  266 SQYMPFGSLYNVLHEQT  282 (448)
T ss_pred             eeeccchHHHHHHhcCc
Confidence            99999999999887654

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=95.98  E-value=0.002  Score=61.33  Aligned_cols=94  Identities=20%  Similarity=0.250  Sum_probs=72.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeee-ccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSS-IDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-~~~~~~~  123 (628)
                      ...|.-.+.+|.|+= .|..|.+.-.++.||+|.+...  .....++..||...|..+.|+||++++.+++. -..+...
T Consensus        16 ~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~   94 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQ   94 (369)
T ss_pred             eeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHH
Confidence            346777888999987 7778888888999999988543  23456788999999999999999999998764 1123446


Q ss_pred             eeeeeecccccCCchhhhh
Q 042887          124 FKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~  142 (628)
                      .+|+|||+|.. ++.+.+.
T Consensus        95 e~y~v~e~m~~-nl~~vi~  112 (369)
T KOG0665|consen   95 EVYLVMELMDA-NLCQVIL  112 (369)
T ss_pred             hHHHHHHhhhh-HHHHHHH
Confidence            78999999974 5666554

>cd05151 ChoK Choline Kinase (ChoK)

Probab=95.74  E-value=0.019  Score=51.64  Aligned_cols=76  Identities=12%  Similarity=0.065  Sum_probs=54.1

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcc-cccceeeeccccccceeeeeeccc
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLI-KIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv-~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      +.++.|.++.||++..  .++.|++|....... ....+.+|+.+++.+.+..++ +++...       ....++||||+
T Consensus         4 ~~l~~G~~~~vy~~~~--~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~-------~~~~~lv~e~i   73 (170)
T cd05151           4 SPLKGGMTNKNYRVEV--ANKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD-------PETGVLITEFI   73 (170)
T ss_pred             eecCCcccCceEEEEE--CCeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe-------CCCCeEEEEec
Confidence            5689999999999998  478899998754332 223567899999988654443 444331       22357999999


Q ss_pred             ccCCchh
Q 042887          133 KCGSSED  139 (628)
Q Consensus       133 ~~g~L~~  139 (628)
                      +|.++.+
T Consensus        74 ~G~~l~~   80 (170)
T cd05151          74 EGSELLT   80 (170)
T ss_pred             CCCcccc
Confidence            9988754

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.46  E-value=0.00044  Score=62.60  Aligned_cols=88  Identities=18%  Similarity=0.221  Sum_probs=72.8

Q ss_pred             ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL  236 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L  236 (628)
                      .+....+.+.||++.|++.. .-..|+-++.+..||++.|.+. ..|..+.++..++.+++..|..+ ..|.+++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            45566788899999998763 4455777888889999999887 78888999999999999888887 688889999999


Q ss_pred             CEEEeecccCc
Q 042887          237 EIISLHSNRFE  247 (628)
Q Consensus       237 ~~L~L~~n~l~  247 (628)
                      +++++-+|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            99988888765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.39  E-value=0.0012  Score=65.11  Aligned_cols=38  Identities=11%  Similarity=0.290  Sum_probs=16.2

Q ss_pred             CCCCCceeecccCC-cccccchHHHhccccccEEEccCC
Q 042887          335 NCSQMEMLYLNTNK-FGGVFLRSIANLSAKITVIGMGDN  372 (628)
Q Consensus       335 ~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n  372 (628)
                      ++.+|+.+-+..++ |+......++.-...|+.+++..+
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~  356 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC  356 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence            44555565555553 333333333322223444444433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.32  E-value=0.0086  Score=32.96  Aligned_cols=19  Identities=32%  Similarity=0.590  Sum_probs=9.3

Q ss_pred             ccEEEccCCccccccchhhh
Q 042887          164 LEMIDVGDNQLIGKFPDFIA  183 (628)
Q Consensus       164 L~~L~Ls~n~l~~~~~~~~~  183 (628)
                      |++|||++|+++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3443343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.27  E-value=0.0093  Score=32.83  Aligned_cols=12  Identities=58%  Similarity=1.077  Sum_probs=4.9

Q ss_pred             CCeEECcCceee
Q 042887          512 LEYLHLQGNSFS  523 (628)
Q Consensus       512 L~~L~Ls~N~l~  523 (628)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.08  E-value=0.0017  Score=64.04  Aligned_cols=84  Identities=12%  Similarity=0.099  Sum_probs=41.6

Q ss_pred             CCCCEEecccCcCccccc--ccccCCCCCCEeeccccc-CcccCCcCc-cCCCCCCEEEeecc-cCcccCChhhhhCCCC
Q 042887          186 SALEAIDISANMLGGRIP--DSLCQLRSLNYLSISENN-FSCKLPLSI-WNISSLEIISLHSN-RFEGSLPLNIGFNIPN  260 (628)
Q Consensus       186 ~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~-i~~~~p~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~  260 (628)
                      ..|+.|.+.+++-.+.-+  ..-...+++++|++.++. +++..-..+ ..+++|++|++..+ .++...-..+....++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            457777777765332211  112456777777777665 111111111 23566677776663 3332222223344566


Q ss_pred             CcEEecccC
Q 042887          261 VNFLSVGQN  269 (628)
Q Consensus       261 L~~L~L~~N  269 (628)
                      |++|+++.+
T Consensus       218 L~~lNlSwc  226 (483)
T KOG4341|consen  218 LKYLNLSWC  226 (483)
T ss_pred             HHHhhhccC
Confidence            666666554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.06  E-value=0.00018  Score=75.19  Aligned_cols=112  Identities=26%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             CCCCCCeEecCCcccccccC----CcccCCcchhcccceEEcCCCcCcccc----chhhhcc-CCCCEeeCcCCcCcccC
Q 042887          432 NLTLLNRLFLGFNNLQGNVP----SSLGNCQNLMTLSRLLDLSGNLLGGSI----PLEVGNL-RNLAEFDLSENHFSNEI  502 (628)
Q Consensus       432 ~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~l~~~L~Ls~N~l~~~~----~~~~~~l-~~L~~L~Ls~N~l~~~~  502 (628)
                      ...++++|.+++|.++....    ..+...+.+   ...|++.+|++.+..    ...+..+ ..+++++++.|.|++..
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~---~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~  278 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESL---LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKG  278 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccchh---hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccc
Confidence            35566666676666552111    112222221   144788888887441    2334444 56788888888887543


Q ss_pred             Cc----cccCCCCCCeEECcCceeeeecC----ccccCCCCCCEEECCCCcc
Q 042887          503 PV----TLSACTTLEYLHLQGNSFSGSLP----LSLKTLKSIKELDLSRNNL  546 (628)
Q Consensus       503 ~~----~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l  546 (628)
                      ..    .+..++.+++|.++.|.+....-    ........+..+-+.++..
T Consensus       279 ~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~  330 (478)
T KOG4308|consen  279 VRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK  330 (478)
T ss_pred             hHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence            33    34456778888888888764221    1122234455555554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.85  E-value=0.0058  Score=65.50  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=18.6

Q ss_pred             CCCCCEEEeecccCcccCC-hhhhhCCCCCcEEeccc
Q 042887          233 ISSLEIISLHSNRFEGSLP-LNIGFNIPNVNFLSVGQ  268 (628)
Q Consensus       233 l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~  268 (628)
                      .+.|+.|.+.++.-...-. ..+....++|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            5666777666653221111 12233466666666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	628
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-22
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-20
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-22
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-20
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-09
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		5e-12
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		8e-10
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-07
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-07
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		4e-06
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		4e-06
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		4e-06
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		1e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		1e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-05
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		2e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-05
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		2e-05
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		2e-05
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		2e-05
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		3e-05
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-05
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		3e-05
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-05
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-05
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-05
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-05
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		3e-05
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-05
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		3e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		3e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		3e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		3e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		4e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		4e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		4e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		4e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		4e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		4e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		5e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		5e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		5e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		5e-05
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		6e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		6e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		6e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		6e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		6e-05
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		7e-05
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		7e-05
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		7e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		1e-04
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-04
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		2e-04
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		2e-04
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-04
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		2e-04
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		2e-04
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		2e-04
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-04
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		2e-04
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-04
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		2e-04
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-04
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		2e-04
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		2e-04
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		2e-04
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		2e-04
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		2e-04
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		2e-04
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		2e-04
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		2e-04
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		2e-04
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-04
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		2e-04
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-04
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		2e-04
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		2e-04
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		2e-04
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-04
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-04
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		2e-04
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		2e-04
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		2e-04
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		2e-04
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-04
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		3e-04
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		3e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		3e-04
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		3e-04
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		3e-04
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		3e-04
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		3e-04
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		3e-04
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		3e-04
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		3e-04
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		4e-04
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		4e-04
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		4e-04
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		4e-04
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		4e-04
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		5e-04
4eut_A	396	Structure Of Bx-795 Complexed With Unphosphorylated		5e-04
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		5e-04
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		5e-04
4euu_A	319	Structure Of Bx-795 Complexed With Human Tbk1 Kinas		5e-04
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		6e-04
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		6e-04
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		6e-04
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 145/324 (44%), Gaps = 33/324 (10%)
Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
           L+ +D+  N+L G F   I+  + L+ ++IS+N   G IP     L+SL YLS++EN F+
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFT 279
Query: 224 CKLPL----SIWNISSLEIISLH---------------------SNRFEGSLPLNIGFNI 258
            ++P     +   ++ L++   H                     SN F G LP++    +
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 259 PNVNFLSVGQNNFTGSLPHSFSN-ASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXX 317
             +  L +  N F+G LP S +N +++L  LD+  N+FSG +  +               
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 318 XXGXXXXXXXXXXXXXXNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT 377
             G              NCS++  L+L+ N   G    S+ +LS K+  + +  N + G 
Sbjct: 400 NNG----FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGE 454
Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXX 437
           IP E+  +  +    +++N LTG IP  +    NL  ++L  N L G IP          
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 438 XXXXXXXXXQGNVPSSLGNCQNLM 461
                     GN+P+ LG+C++L+
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLI 538

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 124/524 (23%), Positives = 192/524 (36%), Gaps = 105/524 (20%)
Query: 153 LGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANF-SALEAIDISANMLGGRIP-------- 203
           +G I  L L  L+ + + +N+  G+ PDF++     L  +D+S N   G +P        
Sbjct: 257 VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 204 -----------------DSLCQLRSLNYLSISENNFSCKLPLSIWNIS-SLEIISLHSNR 245
                            D+L ++R L  L +S N FS +LP S+ N+S SL  + L SN 
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 246 FEGSLPLNIGFNIPN-VNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDXX 304
           F G +  N+  N  N +  L +  N FTG +P + SN S L  L +  N+ SG +     
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP---- 432
Query: 305 XXXXXXXXXXXXXXXGXXXXXXXXXXXXXXNCSQMEMLYLNTNKFGGVFLRSIANLSAKI 364
                                         + S++  L L  N   G   + +  +    
Sbjct: 433 --------------------------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 365 TVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG 424
           T+I +  N ++G IPS + N  N+N   +  N+LTG IP  IG L+NL  L L  NS  G
Sbjct: 467 TLI-LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 425 TIPDXXXXXXXXXXXXXXXXXXQGNVPSSL-GNCQNLMTXXXXXXXXXXXXXXXIPLEVG 483
            IP                    G +P+++      +                 +  E  
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 484 NLRNLAEFD--LSE--NHFSNEIPVTLSACT-------------TLEYLHLQGNSFSGSL 526
              NL EF    SE  N  S   P  +++               ++ +L +  N  SG +
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 645
Query: 527 PLSLKTL------------------------KSIKELDLSRNNLSGQIPKXXXXXXXXXX 562
           P  + ++                        + +  LDLS N L G+IP+          
Sbjct: 646 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 705
Query: 563 XXXXXXHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC 606
                 +  G +P  G F        + N  LCG      LP C
Sbjct: 706 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG----YPLPRC 745

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 145/324 (44%), Gaps = 33/324 (10%)
Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
           L+ +D+  N+L G F   I+  + L+ ++IS+N   G IP     L+SL YLS++EN F+
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFT 282
Query: 224 CKLPL----SIWNISSLEIISLH---------------------SNRFEGSLPLNIGFNI 258
            ++P     +   ++ L++   H                     SN F G LP++    +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 259 PNVNFLSVGQNNFTGSLPHSFSN-ASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXX 317
             +  L +  N F+G LP S +N +++L  LD+  N+FSG +  +               
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 318 XXGXXXXXXXXXXXXXXNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT 377
             G              NCS++  L+L+ N   G    S+ +LS K+  + +  N + G 
Sbjct: 403 NNG----FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGE 457
Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXX 437
           IP E+  +  +    +++N LTG IP  +    NL  ++L  N L G IP          
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 438 XXXXXXXXXQGNVPSSLGNCQNLM 461
                     GN+P+ LG+C++L+
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLI 541

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 124/524 (23%), Positives = 192/524 (36%), Gaps = 105/524 (20%)
Query: 153 LGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANF-SALEAIDISANMLGGRIP-------- 203
           +G I  L L  L+ + + +N+  G+ PDF++     L  +D+S N   G +P        
Sbjct: 260 VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 204 -----------------DSLCQLRSLNYLSISENNFSCKLPLSIWNIS-SLEIISLHSNR 245
                            D+L ++R L  L +S N FS +LP S+ N+S SL  + L SN 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 246 FEGSLPLNIGFNIPN-VNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDXX 304
           F G +  N+  N  N +  L +  N FTG +P + SN S L  L +  N+ SG +     
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP---- 435
Query: 305 XXXXXXXXXXXXXXXGXXXXXXXXXXXXXXNCSQMEMLYLNTNKFGGVFLRSIANLSAKI 364
                                         + S++  L L  N   G   + +  +    
Sbjct: 436 --------------------------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 365 TVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG 424
           T+I +  N ++G IPS + N  N+N   +  N+LTG IP  IG L+NL  L L  NS  G
Sbjct: 470 TLI-LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 425 TIPDXXXXXXXXXXXXXXXXXXQGNVPSSL-GNCQNLMTXXXXXXXXXXXXXXXIPLEVG 483
            IP                    G +P+++      +                 +  E  
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 484 NLRNLAEFD--LSE--NHFSNEIPVTLSACT-------------TLEYLHLQGNSFSGSL 526
              NL EF    SE  N  S   P  +++               ++ +L +  N  SG +
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 527 PLSLKTL------------------------KSIKELDLSRNNLSGQIPKXXXXXXXXXX 562
           P  + ++                        + +  LDLS N L G+IP+          
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 563 XXXXXXHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC 606
                 +  G +P  G F        + N  LCG      LP C
Sbjct: 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG----YPLPRC 748

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 35/262 (13%)
Query: 160 NLLKLEMIDVGD-NQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSIS 218
           NL  L  + +G  N L+G  P  IA  + L  + I+   + G IPD L Q+++L  L  S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 219 ENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
            N  S  LP SI ++ +L  I+   NR  G++P + G        +++ +N  TG +P +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 279 FSNASNLQVLDVYKNHFSGQVKIDXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXNCSQ 338
           F+N  NL  +D+ +N   G   +                                 +   
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASV------------------------------LFGSDKN 222
Query: 339 MEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL 398
            + ++L  N     F      LS  +  + + +N+I GT+P  +  L  +++  V +N L
Sbjct: 223 TQKIHLAKNSL--AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 399 TGTIPHAIGELKNLQGLALVRN 420
            G IP   G L+     A   N
Sbjct: 281 CGEIPQG-GNLQRFDVSAYANN 301

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 108/281 (38%), Gaps = 50/281 (17%)
Query: 337 SQMEMLYLNTNKFGGV--FLRSIANLSAKIT---VIGMGDNQISGTIP---SEIKNLVNI 388
           S   + YLN    GG+   +  I    AK+T    + +    +SG IP   S+IK LV +
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130
Query: 389 NAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDXXXXXXXXXXXXXXXXXXQG 448
           +     YN L+GT+P +I  L NL G+    N + G IPD                    
Sbjct: 131 D---FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-------------------- 167
Query: 449 NVPSSLGNCQNLMTXXXXXXXXXXXXXXXIPLEVGNLRNLAEFDLSENHFSNEIPVTLSA 508
               S G+   L T               IP    NL NLA  DLS N    +  V   +
Sbjct: 168 ----SYGSFSKLFT---SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGS 219
Query: 509 CTTLEYLHLQGNSFS---GSLPLSLKTLKSIKELDLSRNNLSGQIPKXXXXXXXXXXXXX 565
               + +HL  NS +   G + LS    K++  LDL  N + G +P+             
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 566 XXXHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC 606
              +  GE+P+ G            N+ LCG      LP+C
Sbjct: 276 SFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS----PLPAC 312

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 14/127 (11%)
Query: 18  RRKHTQKSSRTLPMEQ-------QFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLG 70
           RRK  Q     +P E+       Q    S  +L  A++NFS  N++G+G FG VYKG+L 
Sbjct: 1   RRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA 60
Query: 71  ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIY 129
           + GT VAVK +  ++ +G    F TE E +S   HRNL+++   C +        + L+Y
Sbjct: 61  D-GTLVAVKRLKEERXQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-----PTERLLVY 114
Query: 130 EYMKCGS 136
            YM  GS
Sbjct: 115 PYMANGS 121

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 34  QFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSF 92
           Q    S  +L  A++NF   N++G+G FG VYKG+L + G  VAVK +  ++ +G    F
Sbjct: 16  QLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLAD-GXLVAVKRLKEERTQGGELQF 74
Query: 93  VTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
            TE E +S   HRNL+++   C +        + L+Y YM  GS
Sbjct: 75  QTEVEMISMAVHRNLLRLRGFCMT-----PTERLLVYPYMANGS 113

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 25  SSRTLPMEQ-QFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL 83
           SS  +P E  + P+V   DL +ATNNF    +IG G FG VYKG L + G  VA+K    
Sbjct: 18  SSYLVPFESYRVPLV---DLEEATNNFDHKFLIGHGVFGKVYKGVLRD-GAKVALKRRTP 73
Query: 84  KQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
           +     + F TE E LS  RH +L+ +I  C        +   LIY+YM+ G+ +  ++ 
Sbjct: 74  ESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE-----RNEMILIYKYMENGNLKRHLYG 128
Query: 144 SNDKLEAGNLGLIQRLNL 161
           S+  L   ++   QRL +
Sbjct: 129 SD--LPTMSMSWEQRLEI 144

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 25  SSRTLPMEQ-QFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL 83
           SS  +P E  + P+V   DL +ATNNF    +IG G FG VYKG L + G  VA+K    
Sbjct: 18  SSYLVPFESYRVPLV---DLEEATNNFDHKFLIGHGVFGKVYKGVLRD-GAKVALKRRTP 73
Query: 84  KQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
           +     + F TE E LS  RH +L+ +I  C        +   LIY+YM+ G+ +  ++ 
Sbjct: 74  ESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE-----RNEMILIYKYMENGNLKRHLYG 128
Query: 144 SNDKLEAGNLGLIQRLNL 161
           S+  L   ++   QRL +
Sbjct: 129 SD--LPTMSMSWEQRLEI 144

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 32  EQQFPMVSYADLSKATNNFS------ASNMIGQGSFGFVYKGKLGETGTTVAVK----VM 81
           + +F   S+ +L   TNNF         N +G+G FG VYKG +    TTVAVK    ++
Sbjct: 9   DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMV 66
Query: 82  NLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           ++  +   + F  E + ++  +H NL++++   S     G D   L+Y YM  GS
Sbjct: 67  DITTEELKQQFDQEIKVMAKCQHENLVELLGFSSD----GDDL-CLVYVYMPNGS 116

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 32  EQQFPMVSYADLSKATNNFS------ASNMIGQGSFGFVYKGKLGETGTTVAVK----VM 81
           + +F   S+ +L   TNNF         N +G+G FG VYKG +    TTVAVK    ++
Sbjct: 9   DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMV 66
Query: 82  NLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           ++  +   + F  E + ++  +H NL++++   S     G D   L+Y YM  GS
Sbjct: 67  DITTEELKQQFDQEIKVMAKCQHENLVELLGFSSD----GDDL-CLVYVYMPNGS 116

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 32  EQQFPMVSYADLSKATNNFS------ASNMIGQGSFGFVYKGKLGETGTTVAVK----VM 81
           + +F   S+ +L   TNNF         N +G+G FG VYKG +    TTVAVK    ++
Sbjct: 3   DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMV 60
Query: 82  NLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           ++  +   + F  E + ++  +H NL++++   S     G D   L+Y YM  GS
Sbjct: 61  DITTEELKQQFDQEIKVMAKCQHENLVELLGFSSD----GDDL-CLVYVYMPNGS 110

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 30/229 (13%)
Query: 36  PMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTE 95
           P  +Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E
Sbjct: 2   PSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKE 60
Query: 96  CEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE------ 149
              +  ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +        
Sbjct: 61  AAVMKEIKHPNLVQLLGVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVNAVVLL 115
Query: 150 ------AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLG 199
                 +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G
Sbjct: 116 YMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTXTAHAG 172
Query: 200 GRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
            + P       SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 173 AKFPIKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 216

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 30/223 (13%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
            + +  + +G G FG VY+G   +   TVAVK +  +     + F+ E   +  ++H NL
Sbjct: 11  TDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNL 69
Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAG------------NLGL 155
           ++++ VC+    +   F  +I E+M  G+  D++ + N +  +              +  
Sbjct: 70  VQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY 124
Query: 156 IQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRS 211
           +++ N +  ++      VG+N L+ K  DF    S L   D      G + P       S
Sbjct: 125 LEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTXTAHAGAKFPIKWTAPES 181
Query: 212 LNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNI 254
           L Y     N FS K  +  + +   EI +   + + G  P  +
Sbjct: 182 LAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQV 219

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 100/233 (42%), Gaps = 39/233 (16%)
Query: 26  SRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTT----VAVKVM 81
           S T P + Q  ++   +L +         ++G G+FG VYKG     G T    VA+K++
Sbjct: 23  SGTAPNQAQLRILKETELKRV-------KVLGSGAFGTVYKGIWVPEGETVKIPVAIKIL 75
Query: 82  NLKQKGAAK-SFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDW 140
           N      A   F+ E   ++++ H +L++++ VC S   +      L+ + M  G   ++
Sbjct: 76  NETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ------LVTQLMPHGCLLEY 129
Query: 141 MHQSND------------KLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDF--IANF- 185
           +H+  D            ++  G + L +R    +L   D+    ++ K P+   I +F 
Sbjct: 130 VHEHKDNIGSQLLLNWCVQIAKGMMYLEER----RLVHRDLAARNVLVKSPNHVKITDFG 185
Query: 186 --SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL 236
               LE  +   N  GG++P     L  ++Y   +  +      ++IW + + 
Sbjct: 186 LARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTF 238

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 30/229 (13%)
Query: 36  PMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTE 95
           P  +Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E
Sbjct: 5   PSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKE 63
Query: 96  CEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE------ 149
              +  ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +        
Sbjct: 64  AAVMKEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLL 118
Query: 150 ------AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLG 199
                 +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G
Sbjct: 119 YMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAG 175
Query: 200 GRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
            + P       SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 176 AKFPIKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 219

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 54  NMIGQGSFGFVYKGKLG-ETGTT--VAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLI 108
            ++G+G FG V +G L  E GT+  VAVK M L    +   + F++E   + +  H N+I
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99
Query: 109 KIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAG 151
           +++ VC  +  +G+    +I  +MK G    ++  S  +LE G
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYS--RLETG 140

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 30/223 (13%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
            + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +  ++H NL
Sbjct: 11  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNL 69
Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAG------------NLGL 155
           ++++ VC+    +   F  +I E+M  G+  D++ + N +  +              +  
Sbjct: 70  VQLLGVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY 124
Query: 156 IQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRS 211
           +++ N +  ++      VG+N L+ K  DF    S L   D      G + P       S
Sbjct: 125 LEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTXTAHAGAKFPIKWTAPES 181
Query: 212 LNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNI 254
           L Y     N FS K  +  + +   EI +   + + G  P  +
Sbjct: 182 LAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQV 219

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 22  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 82  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 116

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 96  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 130

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 17  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 77  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 111

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 96  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 130

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 78  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 112

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 78  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 112

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 109 GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 143

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 16  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 76  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 110

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 23  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 83  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 117

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 78  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 112

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 24  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 84  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 118

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 19  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 78
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 79  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 113

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 81  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 115

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 25  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++ +  ++++
Sbjct: 85  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERID 119

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 63
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAG-------- 151
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +  +         
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVSAVVLLYMAT 118
Query: 152 ----NLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
                +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 119 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 175
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 176 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 215

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 28  TLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTT----VAVKVMNL 83
           T P + Q  ++   +L +         ++G G+FG VYKG     G T    VA+K++N 
Sbjct: 2   TAPNQAQLRILKETELKRV-------KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNE 54
Query: 84  KQKGAAK-SFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMH 142
                A   F+ E   ++++ H +L++++ VC S   +      L+ + M  G   +++H
Sbjct: 55  TTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ------LVTQLMPHGCLLEYVH 108
Query: 143 QSND------------KLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDF--IANF--- 185
           +  D            ++  G + L +R    +L   D+    ++ K P+   I +F   
Sbjct: 109 EHKDNIGSQLLLNWCVQIAKGMMYLEER----RLVHRDLAARNVLVKSPNHVKITDFGLA 164
Query: 186 SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL 236
             LE  +   N  GG++P     L  ++Y   +  +      ++IW + + 
Sbjct: 165 RLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTF 215

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 63
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAG-------- 151
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +  +         
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVSAVVLLYMAT 118
Query: 152 ----NLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
                +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 119 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 175
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 176 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 215

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 10  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 68
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 69  KEIKHPNLVQLLGVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVNAVVLLYMAT 123
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 124 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 180
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 181 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 220

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 10  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 68
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 69  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 123
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 124 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTXTAHAGAKFP 180
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 181 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 220

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 63
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAG-------- 151
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +  +         
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMAT 118
Query: 152 ----NLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
                +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 119 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 175
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 176 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 215

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 63
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAG-------- 151
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +  +         
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMAT 118
Query: 152 ----NLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
                +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 119 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 175
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 176 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 215

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 10  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 68
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAG-------- 151
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +  +         
Sbjct: 69  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMAT 123
Query: 152 ----NLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
                +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 124 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 180
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 181 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 220

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 25/212 (11%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 63
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 118
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 119 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 175
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISS 235
                  SL Y   S  +      + +W I++
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 10  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 68
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 69  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 123
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 124 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 180
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 181 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 220

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 25/212 (11%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 63
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 118
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 119 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 175
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISS 235
                  SL Y   S  +      + +W I++
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 30/223 (13%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
            + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +  ++H NL
Sbjct: 11  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNL 69
Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAG------------NLGL 155
           ++++ VC+    +   F  +I E+M  G+  D++ + N +  +              +  
Sbjct: 70  VQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY 124
Query: 156 IQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRS 211
           +++ N +  ++      VG+N L+ K  DF    S L   D      G + P       S
Sbjct: 125 LEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTFTAHAGAKFPIKWTAPES 181
Query: 212 LNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNI 254
           L Y     N FS K  +  + +   EI +   + + G  P  +
Sbjct: 182 LAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQV 219

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 25/212 (11%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 7   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 65
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 66  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 120
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 121 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 177
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISS 235
                  SL Y   S  +      + +W I++
Sbjct: 178 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 209

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 10  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 68
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 69  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 123
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 124 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 180
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 181 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 220

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 25/212 (11%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 18  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 76
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 77  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 131
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 132 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 188
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISS 235
                  SL Y   S  +      + +W I++
Sbjct: 189 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 220

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 212 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 270
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAG-------- 151
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +  +         
Sbjct: 271 KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMAT 325
Query: 152 ----NLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
                +  +++ N +   +      VG+N L+ K  DF    S L   D      G + P
Sbjct: 326 QISSAMEYLEKKNFIHRNLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 382
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 383 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 422

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 251 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 309
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 310 KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 364
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +   +      VG+N L+ K  DF    S L   D      G + P
Sbjct: 365 QISSAMEYLEKKNFIHRNLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 421
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 422 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 461

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 7   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 65
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 66  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 120
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 121 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAHAGAKFP 177
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 178 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 217

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 6   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 64
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 65  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 119
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 120 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAPAGAKFP 176
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 177 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 216

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 40  YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL 99
           Y        + +  + +G G +G VY+G   +   TVAVK +  +     + F+ E   +
Sbjct: 7   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVM 65
Query: 100 SNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE---------- 149
             ++H NL++++ VC+    +   F  +I E+M  G+  D++ + N +            
Sbjct: 66  KEIKHPNLVQLLGVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 120
Query: 150 --AGNLGLIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
             +  +  +++ N +  ++      VG+N L+ K  DF    S L   D      G + P
Sbjct: 121 QISSAMEYLEKKNFIHRDLAARNCLVGENHLV-KVADF--GLSRLMTGDTYTAPAGAKFP 177
Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEG 248
                  SL Y     N FS K  +  + +   EI +   + + G
Sbjct: 178 IKWTAPESLAY-----NKFSIKSDVWAFGVLLWEIATYGMSPYPG 217

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+FG VYK K  ETG   A KV+  K +   + ++ E E L+   H  ++K++
Sbjct: 27  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLL 82

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+FG VYK K  ETG   A KV+  K +   + ++ E E L+   H  ++K++
Sbjct: 19  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLL 74

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI EY+  GS  D++    ++++
Sbjct: 81  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQAHAERID 115

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 27/205 (13%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
            + +  + +G G +G VY G   +   TVAVK +  +     + F+ E   +  ++H NL
Sbjct: 32  TDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNL 90
Query: 108 IKIITVCS-SIDFKGVDFKALIYEYMKCGSSEDWMHQSN-DKLEA-----------GNLG 154
           ++++ VC+    F       ++ EYM  G+  D++ + N +++ A             + 
Sbjct: 91  VQLLGVCTLEPPF------YIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAME 144
Query: 155 LIQRLNLLKLEMID----VGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLR 210
            +++ N +  ++      VG+N ++ K  DF    S L   D      G + P       
Sbjct: 145 YLEKKNFIHRDLAARNCLVGENHVV-KVADF--GLSRLMTGDTYTAHAGAKFPIKWTAPE 201
Query: 211 SLNYLSISENNFSCKLPLSIWNISS 235
           SL Y + S  +      + +W I++
Sbjct: 202 SLAYNTFSIKSDVWAFGVLLWEIAT 226

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 34  QFPMVSYADLSKATNNFS------ASNMIGQGSFGFVYKGKLGETGTTVAVK----VMNL 83
           +F   S+ +L   TNNF         N  G+G FG VYKG +    TTVAVK    ++++
Sbjct: 2   RFHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV--NNTTVAVKKLAAMVDI 59
Query: 84  KQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
             +   + F  E +  +  +H NL++++   S     G D   L+Y Y   GS
Sbjct: 60  TTEELKQQFDQEIKVXAKCQHENLVELLGFSSD----GDDL-CLVYVYXPNGS 107

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 7   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 67  NIVKLLDVIHT 77

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 61  HPNIVKLLDVIHT 73

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 64  HPNIVKLLDVIHT 76

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 63  NIVKLLDVIHT 73

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 10  ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 69
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 70  NIVKLLDVIHT 80

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 61  HPNIVKLLDVIHT 73

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 104 HRNLIKIITVCSS-------IDFKGVDFKALI 128
           H N++K++ V  +        +F  +D K  +
Sbjct: 64  HPNIVKLLDVIHTENKLYLVFEFLSMDLKKFM 95

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 61  HPNIVKLLDVIHT 73

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 64  HPNIVKLLDVIHT 76

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 63  HPNIVKLLDVIHT 75

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 63  NIVKLLDVIHT 73

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 64  HPNIVKLLDVIHT 76

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 63  NIVKLLDVIHT 73

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 62  NIVKLLDVIHT 72

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 10  ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 69
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 70  NIVKLLDVIHT 80

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 62  NIVKLLDVIHT 72

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 61  HPNIVKLLDVIHT 73

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 64  HPNIVKLLDVIHT 76

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 62  NIVKLLDVIHT 72

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 5   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 64
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 65  HPNIVKLLDVIHT 77

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 104 HRNLIKIITVCSS-------IDFKGVDFKALI 128
           H N++K++ V  +        +F  +D K  +
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEFLSMDLKKFM 93

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 62  NIVKLLDVIHT 72

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 63  HPNIVKLLDVIHT 75

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 64  HPNIVKLLDVIHT 76

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 4   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 64  NIVKLLDVIHT 74

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 62  HPNIVKLLDVIHT 74

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 63  HPNIVKLLDVIHT 75

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 63  HPNIVKLLDVIHT 75

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 63  NIVKLLDVIHT 73

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 62  HPNIVKLLDVIHT 74

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 106 NLIKIITVCSS 116
           N++K++ V  +
Sbjct: 62  NIVKLLDVIHT 72

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 61  HPNIVKLLDVIHT 73

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVR 103
           +  NF     IG+G++G VYK +   TG  VA+K + L  + +G   + + E   L  + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 104 HRNLIKIITVCSS 116
           H N++K++ V  +
Sbjct: 62  HPNIVKLLDVIHT 74

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVK--VMNLKQKGAAKSFVTECEALSNVRHRNLIKIITV 113
           IGQG+FG V+K +  +TG  VA+K  +M  +++G   + + E + L  ++H N++ +I +
Sbjct: 25  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 84
Query: 114 CSS 116
           C +
Sbjct: 85  CRT 87

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVK--VMNLKQKGAAKSFVTECEALSNVRHRNLIKIITV 113
           IGQG+FG V+K +  +TG  VA+K  +M  +++G   + + E + L  ++H N++ +I +
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 114 CSS 116
           C +
Sbjct: 86  CRT 88

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVK--VMNLKQKGAAKSFVTECEALSNVRHRNLIKIITV 113
           IGQG+FG V+K +  +TG  VA+K  +M  +++G   + + E + L  ++H N++ +I +
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 114 CSS 116
           C +
Sbjct: 86  CRT 88

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+FG VYK +  ET    A KV++ K +   + ++ E + L++  H N++K++
Sbjct: 45  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLL 100

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+FG VYK +  ET    A KV++ K +   + ++ E + L++  H N++K++
Sbjct: 45  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLL 100

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVK--VMNLKQKGAAKSFVTECEALSNVRHRNLIKIITV 113
           IGQG+FG V+K +  +TG  VA+K  +M  +++G   + + E + L  ++H N++ +I +
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 114 CSS 116
           C +
Sbjct: 86  CRT 88

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+FG VYK +  ET    A KV++ K +   + ++ E + L++  H N++K++
Sbjct: 45  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLL 100

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 56  IGQGSFGFV----YKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V    Y      TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            VC S   + +    LI E++  GS  +++ +  ++++
Sbjct: 81  GVCYSAGRRNL---KLIMEFLPYGSLREYLQKHKERID 115

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 56  IGQGSFGFVYKGKL-GETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIK 109
           +G GSFG V +G+    +G TV+V V  LK     Q  A   F+ E  A+ ++ HRNLI+
Sbjct: 16  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 110 IITVCSSIDFKGV 122
           +  V  +   K V
Sbjct: 76  LYGVVLTPPMKMV 88

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 56  IGQGSFGFVYKGKL-GETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIK 109
           +G GSFG V +G+    +G TV+V V  LK     Q  A   F+ E  A+ ++ HRNLI+
Sbjct: 16  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 110 IITVCSSIDFKGV 122
           +  V  +   K V
Sbjct: 76  LYGVVLTPPMKMV 88

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 56  IGQGSFGFVYKGKL-GETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIK 109
           +G GSFG V +G+    +G TV+V V  LK     Q  A   F+ E  A+ ++ HRNLI+
Sbjct: 16  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 110 IITVCSSIDFKGV 122
           +  V  +   K V
Sbjct: 76  LYGVVLTPPMKMV 88

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 56  IGQGSFGFVYKGKL-GETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIK 109
           +G GSFG V +G+    +G TV+V V  LK     Q  A   F+ E  A+ ++ HRNLI+
Sbjct: 26  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85
Query: 110 IITVCSSIDFKGV 122
           +  V  +   K V
Sbjct: 86  LYGVVLTPPMKMV 98

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 56  IGQGSFGFVYKGKL-GETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIK 109
           +G GSFG V +G+    +G TV+V V  LK     Q  A   F+ E  A+ ++ HRNLI+
Sbjct: 26  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85
Query: 110 IITVCSSIDFKGV 122
           +  V  +   K V
Sbjct: 86  LYGVVLTPPMKMV 98

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 56  IGQGSFGFVYKGKL-GETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIK 109
           +G GSFG V +G+    +G TV+V V  LK     Q  A   F+ E  A+ ++ HRNLI+
Sbjct: 20  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 79
Query: 110 IITVCSSIDFKGV 122
           +  V  +   K V
Sbjct: 80  LYGVVLTPPMKMV 92

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 56  IGQGSFGFVYKGKL-GETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIK 109
           +G GSFG V +G+    +G TV+V V  LK     Q  A   F+ E  A+ ++ HRNLI+
Sbjct: 20  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 79
Query: 110 IITVCSSIDFKGV 122
           +  V  +   K V
Sbjct: 80  LYGVVLTPPMKMV 92

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 28  TLPMEQQFP---MVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL- 83
           TL  + Q P    VS A  + + + +     +G+G++G VYK     T  TVA+K + L 
Sbjct: 11  TLEAQTQGPGSMSVSAAPSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLE 70
Query: 84  -KQKGAAKSFVTECEALSNVRHRNLIKIITV 113
            +++G   + + E   L  ++HRN+I++ +V
Sbjct: 71  HEEEGVPGTAIREVSLLKELQHRNIIELKSV 101

>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human Tbk1 Kinase- Uld Domain Length = 396

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 44  SKATNN--FSASNMIGQGSFGFVYKGKLGETGTTVAVKVM-NLKQKGAAKSFVTECEALS 100
           S++T+N  +  S+++GQG+   V++G+  +TG   A+KV  N+         + E E L 
Sbjct: 3   SQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLK 62
Query: 101 NVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
            + H+N++K+  +      +    K LI E+  CGS
Sbjct: 63  KLNHKNIVKLFAIEEETTTR---HKVLIMEFCPCGS 95

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG+G FG V  G     G  VAVK   +K    A++F+ E   ++ +RH NL++++ V  
Sbjct: 20  IGKGEFGDVMLGDY--RGNKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVI- 74
Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGN 152
            ++ KG  +  ++ EYM  GS  D++      +  G+
Sbjct: 75  -VEEKGGLY--IVTEYMAKGSLVDYLRSRGRSVLGGD 108

>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase Domain Phosphorylated On Ser172 Length = 319

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 44  SKATNN--FSASNMIGQGSFGFVYKGKLGETGTTVAVKVM-NLKQKGAAKSFVTECEALS 100
           S++T+N  +  S+++GQG+   V++G+  +TG   A+KV  N+         + E E L 
Sbjct: 3   SQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLK 62
Query: 101 NVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
            + H+N++K+  +      +    K LI E+  CGS
Sbjct: 63  KLNHKNIVKLFAIEEETTTR---HKVLIMEFCPCGS 95

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 56  IGQGSFGFVYKGKLGETGTT-----VAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKI 110
           +G+G+FG V+  +      T     VAVK +      A K F  E E L+N++H +++K 
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 111 ITVCSSIDFKGVDFKALIYEYMKCGS 136
             VC        D   +++EYMK G 
Sbjct: 83  YGVCGD-----GDPLIMVFEYMKHGD 103

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 48  NNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNV 102
           +N      +G+G+FG V+  +       +    VAVK +      A K F  E E L+N+
Sbjct: 13  HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL 72
Query: 103 RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           +H +++K   VC        D   +++EYMK G 
Sbjct: 73  QHEHIVKFYGVCVE-----GDPLIMVFEYMKHGD 101

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG+G FG V  G     G  VAVK   +K    A++F+ E   ++ +RH NL++++ V  
Sbjct: 29  IGKGEFGDVMLGDY--RGNKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVI- 83
Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGN 152
            ++ KG  +  ++ EYM  GS  D++      +  G+
Sbjct: 84  -VEEKGGLY--IVTEYMAKGSLVDYLRSRGRSVLGGD 117

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG+G FG V  G     G  VAVK   +K    A++F+ E   ++ +RH NL++++ V  
Sbjct: 14  IGKGEFGDVMLGDY--RGNKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVI- 68
Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGN 152
            ++ KG  +  ++ EYM  GS  D++      +  G+
Sbjct: 69  -VEEKGGLY--IVTEYMAKGSLVDYLRSRGRSVLGGD 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	628
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-118
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-101
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-85
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-28
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	6e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	5e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	4e-14
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	4e-14
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	8e-14
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	8e-14
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	9e-14
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-13
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-13
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-13
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-07
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-13
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	5e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	9e-13
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-12
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-12
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-12
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-12
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-11
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-11
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-11
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	3e-11
3pls_A	298	Macrophage-stimulating protein receptor; protein k	4e-11
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	4e-11
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-11
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	7e-11
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	7e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	8e-11
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	9e-11
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-10
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-10
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-10
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-10
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	3e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-10
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-10
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	4e-10
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	4e-10
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	4e-10
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	5e-10
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	5e-10
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-10
4aoj_A	329	High affinity nerve growth factor receptor; transf	6e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	7e-10
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	7e-10
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	9e-10
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-09
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-09
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-09
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-09
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-09
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-09
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-09
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-09
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-09
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-09
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-09
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-09
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	3e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	4e-09
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	5e-09
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	5e-09
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-09
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-09
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	6e-09
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	7e-09
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-08
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-08
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-08
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-08
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-08
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	3e-08
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	3e-08
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	4e-08
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	5e-08
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	6e-08
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	6e-08
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	8e-08
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	8e-08
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	8e-08
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-07
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-07
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-07
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	3e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-07
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-07
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	4e-07
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	4e-07
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	5e-07
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	5e-07
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	5e-07
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	5e-07
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	5e-07
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	6e-07
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	8e-07
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	8e-07
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	9e-07
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-06
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	3e-06
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	3e-06
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	4e-06
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	4e-06
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	4e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	6e-06
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	7e-06
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	7e-06
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	7e-06
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-05
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-05
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-05
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-05
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-05
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-05
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-05
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-05
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	3e-05
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-05
3bhy_A	283	Death-associated protein kinase 3; death associate	3e-05
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	4e-05
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-05
3rp9_A	458	Mitogen-activated protein kinase; structural genom	4e-05
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	5e-05
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	5e-05
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
3aln_A	327	Dual specificity mitogen-activated protein kinase;	7e-05
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	8e-05
3fme_A	290	Dual specificity mitogen-activated protein kinase;	9e-05
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	9e-05
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	1e-04
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	1e-04
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-04
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-04
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-04
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	1e-04
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-04
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-04
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	2e-04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	3e-04
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	4e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	4e-04
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	5e-04
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-04
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	6e-04
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	7e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	7e-04
3niz_A	311	Rhodanese family protein; structural genomics, str	8e-04
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  368 bits (947), Expect = e-118
 Identities = 132/473 (27%), Positives = 202/473 (42%), Gaps = 42/473 (8%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP-DSLCQLRSLNYLSIS 218
               L  +D+  N   G  P F  + S LE++ +S+N   G +P D+L ++R L  L +S
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351

Query: 219 ENNFSCKLPLSIWNIS-SLEIISLHSNRFEGSLPLNIGFNI-PNVNFLSVGQNNFTGSLP 276
            N FS +LP S+ N+S SL  + L SN F G +  N+  N    +  L +  N FTG +P
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

Query: 277 HSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL-GTESTSDLDFLTLLTN 335
            + SN S L  L +  N+ SG +      LS L  L L  N L G            L  
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-------LMY 464

Query: 336 CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEY 395
              +E L L+ N   G     ++N +  +  I + +N+++G IP  I  L N+    +  
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 396 NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG 455
           N  +G IP  +G+ ++L  L L  N   GTIP  +   +      +  N + G     + 
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIK 579

Query: 456 NCQNLMTLS----------------------RLLDLSGNLLGGSIPLEVGNLRNLAEFDL 493
           N                                 +++  + GG       N  ++   D+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639

Query: 494 SENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY 553
           S N  S  IP  + +   L  L+L  N  SGS+P  +  L+ +  LDLS N L G+IP+ 
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699

Query: 554 LENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC 606
           +  L  L  ++LS N+  G +P  G F        + N  LCG      LP C
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG----YPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  323 bits (830), Expect = e-101
 Identities = 119/423 (28%), Positives = 199/423 (47%), Gaps = 25/423 (5%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLC-QLRSLNYLSIS 218
              +L+++++  NQ +G  P       +L+ + ++ N   G IPD L     +L  L +S
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 219 ENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
            N+F   +P    + S LE ++L SN F G LP++    +  +  L +  N F+G LP S
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

Query: 279 FSNAS-NLQVLDVYKNHFSGQV--KIDFNRLSNLSRLFLSKNNL-GTESTSDLDFLTLLT 334
            +N S +L  LD+  N+FSG +   +  N  + L  L+L  N   G    +       L+
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-------LS 415

Query: 335 NCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE 394
           NCS++  L+L+ N   G    S+ +LS K+  + +  N + G IP E+  +  +    ++
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 395 YNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL 454
           +N LTG IP  +    NL  ++L  N L G IP  +G L  L  L L  N+  GN+P+ L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 455 GNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEY 514
           G+C++L      LDL+ NL  G+IP  +          ++ N  + +  V +      + 
Sbjct: 535 GDCRSL----IWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKE 586

Query: 515 LHLQGN--SFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572
            H  GN   F G     L  L +    +++     G      +N   + +L++SYN   G
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646

Query: 573 EVP 575
            +P
Sbjct: 647 YIP 649

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  302 bits (775), Expect = 6e-93
 Identities = 121/423 (28%), Positives = 197/423 (46%), Gaps = 27/423 (6%)

Query: 163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNF 222
            +++     N         + + + LE++ +S + + G +        SL  L +S N+ 
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSL 112

Query: 223 SCKLP--LSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF- 279
           S  +    S+ + S L+ +++ SN  +    ++ G  + ++  L +  N+ +G+    + 
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 280 --SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCS 337
                  L+ L +  N  SG   +D +R  NL  L +S NN  T        +  L +CS
Sbjct: 173 LSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNFSTG-------IPFLGDCS 223

Query: 338 QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ 397
            ++ L ++ NK  G F R+I+  + ++ ++ +  NQ  G IP     L ++    +  N+
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280

Query: 398 LTGTIPHAI-GELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP-SSLG 455
            TG IP  + G    L GL L  N   G +P   G+ +LL  L L  NN  G +P  +L 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 456 NCQNLMTLSRLLDLSGNLLGGSIPLEVGNLR-NLAEFDLSENHFSNEIPVTLSAC--TTL 512
             + L    ++LDLS N   G +P  + NL  +L   DLS N+FS  I   L      TL
Sbjct: 341 KMRGL----KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 513 EYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572
           + L+LQ N F+G +P +L     +  L LS N LSG IP  L +L  L  L L  N  EG
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 573 EVP 575
           E+P
Sbjct: 457 EIP 459

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  171 bits (436), Expect = 2e-45
 Identities = 73/276 (26%), Positives = 118/276 (42%), Gaps = 21/276 (7%)

Query: 307 SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITV 366
             ++ + LS   L    ++    L  LT    +E L+L+ +   G  +      +  +T 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTG---LESLFLSNSHINGS-VSGFKCSA-SLTS 104

Query: 367 IGMGDNQISGTIPS--EIKNLVNINAFGVEYNQLTGTIP-HAIGELKNLQGLALVRNSLR 423
           + +  N +SG + +   + +   +    V  N L          +L +L+ L L  NS+ 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 424 GTIPDTL---GNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL 480
           G              L  L +  N + G+V   +  C NL      LD+S N     IP 
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNL----EFLDVSSNNFSTGIP- 217

Query: 481 EVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELD 540
            +G+   L   D+S N  S +    +S CT L+ L++  N F G +P     LKS++ L 
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLS 275

Query: 541 LSRNNLSGQIPKYLE-NLLFLAYLNLSYNHFEGEVP 575
           L+ N  +G+IP +L      L  L+LS NHF G VP
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.4 bits (246), Expect = 2e-21
 Identities = 33/160 (20%), Positives = 67/160 (41%), Gaps = 1/160 (0%)

Query: 140 WMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLG 199
               + + +       I+   + K         +  G   + +   S     +I++ + G
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 200 GRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIP 259
           G    +     S+ +L +S N  S  +P  I ++  L I++L  N   GS+P  +G ++ 
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLR 680

Query: 260 NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQV 299
            +N L +  N   G +P + S  + L  +D+  N+ SG +
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  267 bits (685), Expect = 6e-85
 Identities = 81/276 (29%), Positives = 126/276 (45%), Gaps = 11/276 (3%)

Query: 333 LTNCSQMEMLYLNTNKFGGVFL--RSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINA 390
            T   ++  L L+       +    S+ANL     +   G N + G IP  I  L  ++ 
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 391 FGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNV 450
             + +  ++G IP  + ++K L  L    N+L GT+P ++ +L  L  +    N + G +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 451 PSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT 510
           P S G+   L T    + +S N L G IP    NL NLA  DLS N    +  V   +  
Sbjct: 166 PDSYGSFSKLFT---SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221

Query: 511 TLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHF 570
             + +HL  NS +  L   +   K++  LDL  N + G +P+ L  L FL  LN+S+N+ 
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 571 EGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC 606
            GE+P+ G            N+ LCG      LP+C
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGS----PLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  193 bits (494), Expect = 6e-57
 Identities = 81/341 (23%), Positives = 126/341 (36%), Gaps = 47/341 (13%)

Query: 177 KFPDFIANFSAL----EAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS--CKLPLSI 230
           +    + N + L       D       G + D+  Q   +N L +S  N      +P S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 231 WNISSLEIISLHS-NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLD 289
            N+  L  + +   N   G +P  I   +  +++L +   N +G++P   S    L  LD
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 290 VYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKF 349
              N  SG +    + L NL  +    N +                              
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRI------------------------------ 161

Query: 350 GGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGEL 409
            G    S  + S   T + +  N+++G IP    NL N+    +  N L G      G  
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220

Query: 410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDL 469
           KN Q + L +NSL   +   +G    LN L L  N + G +P  L   + L      L++
Sbjct: 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL----HSLNV 275

Query: 470 SGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT 510
           S N L G IP + GNL+       + N      P  L ACT
Sbjct: 276 SFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  167 bits (426), Expect = 3e-47
 Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 23/217 (10%)

Query: 396 NQLTGTIPHAIGELKNLQGLALVRNSLRGT--IPDTLGNLTLLNRLFL-GFNNLQGNVPS 452
               G +     +   +  L L   +L     IP +L NL  LN L++ G NNL G +P 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 453 SLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTL 512
           ++     L      L ++   + G+IP  +  ++ L   D S N  S  +P ++S+   L
Sbjct: 96  AIAKLTQL----HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 513 EYLHLQGNSFSGSLPLSLKTLKS-IKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
             +   GN  SG++P S  +       + +SRN L+G+IP    NL  LA+++LS N  E
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210

Query: 572 GEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHF 608
           G+              L G+       +++HL     
Sbjct: 211 GDASV-----------LFGS---DKNTQKIHLAKNSL 233

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  161 bits (411), Expect = 4e-45
 Identities = 70/264 (26%), Positives = 113/264 (42%), Gaps = 37/264 (14%)

Query: 160 NLLKLEMIDVGD-NQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSIS 218
           NL  L  + +G  N L+G  P  IA  + L  + I+   + G IPD L Q+++L  L  S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 219 ENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
            N  S  LP SI ++ +L  I+   NR  G++P + G        +++ +N  TG +P +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 279 FSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL-GTESTSDLDFLTLLTNCS 337
           F+N  NL  +D+ +N   G   + F    N  ++ L+KN+L           L  +    
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD--------LGKVGLSK 244

Query: 338 QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ 397
            +  L L                          +N+I GT+P  +  L  +++  V +N 
Sbjct: 245 NLNGLDLR-------------------------NNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 398 LTGTIPHAIGELKNLQGLALVRNS 421
           L G IP   G L+     A   N 
Sbjct: 280 LCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.5 bits (114), Expect = 7e-06
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 515 LHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQ--IPKYLENLLFLAYLNLS-YNHFE 571
                 ++ G L  +      +  LDLS  NL     IP  L NL +L +L +   N+  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 572 GEVP 575
           G +P
Sbjct: 91  GPIP 94

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  217 bits (554), Expect = 2e-62
 Identities = 65/447 (14%), Positives = 142/447 (31%), Gaps = 56/447 (12%)

Query: 158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSI 217
               LK   I    N +       +   + L    +  +           +  +  Y   
Sbjct: 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 218 SENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFT----- 272
            +        L   N+  L  + +++      LP  +   +P +  ++V  N        
Sbjct: 238 YKT-----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQL 291

Query: 273 ---GSLPHSFSNASNLQVLDVYKNHF-SGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLD 328
                          +Q++ +  N+  +  V+    ++  L  L    N L  +  +   
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--- 348

Query: 329 FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS--EIKNLV 386
                 +  ++  L L  N+   +   +    + ++  +    N++   IP+  + K++ 
Sbjct: 349 ----FGSEIKLASLNLAYNQITEI-PANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402

Query: 387 NINAFGVEYNQLTG-------TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRL 439
            ++A    YN++          +     +  N+  + L  N +     +     + L+ +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 440 FLGFNNLQG-------NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP-LEVGNLRNLAEF 491
            L  N L         +   +  N   L +    +DL  N L           L  L   
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTS----IDLRFNKLTKLSDDFRATTLPYLVGI 518

Query: 492 DLSENHFSNEIPVTLSACTTLEYLHLQ------GNSFSGSLPLSLKTLKSIKELDLSRNN 545
           DLS N FS + P      +TL+   ++      GN      P  +    S+ +L +  N+
Sbjct: 519 DLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 546 LSGQIPKYLENLLFLAYLNLSYNHFEG 572
           +     K   N   ++ L++  N    
Sbjct: 578 IRKVNEKITPN---ISVLDIKDNPNIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  214 bits (546), Expect = 3e-61
 Identities = 67/452 (14%), Positives = 132/452 (29%), Gaps = 75/452 (16%)

Query: 160 NLLKLEMIDVGDNQLIGK-------------------FPDFIANFSALEAIDISANMLGG 200
            L KL    +G++  + +                         N   L  +++       
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 201 RIPDSLCQLRSLNYLSISENNF--------SCKLPLSIWNISSLEIISLHSNRF-EGSLP 251
           ++P  L  L  +  ++++ N            +          ++II +  N      + 
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 252 LNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSR 311
            ++   +  +  L    N   G LP +F +   L  L++  N  +            +  
Sbjct: 324 TSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 312 LFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGD 371
           L  + N L       +  +    + S M  +  + N+ G V  ++               
Sbjct: 382 LSFAHNKL-----KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP------------ 424

Query: 372 NQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG------- 424
                 +       +N+++  +  NQ++            L  + L+ N L         
Sbjct: 425 ------LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 425 TIPDTLGNLTLLNRLFLGFNNLQGNVPS-SLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG 483
              +   N  LL  + L FN L              L      +DLS N      P +  
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL----VGIDLSYNSFSK-FPTQPL 533

Query: 484 NLRNLAEFDLSE------NHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIK 537
           N   L  F +        N    E P  ++ C +L  L +  N     +   +    +I 
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNIS 590

Query: 538 ELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569
            LD+  N        Y+   +      L Y+ 
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  211 bits (540), Expect = 2e-60
 Identities = 65/473 (13%), Positives = 151/473 (31%), Gaps = 71/473 (15%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFI------------------------------ANFSALE 189
            L +LE++ +G +        F                                +FS L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 190 AIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGS 249
              I+++     I  S         +    NN +  +  ++  ++ L    + ++ F   
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAE 221

Query: 250 LPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNL 309
                          +        +    + N  +L  ++VY      ++      L  +
Sbjct: 222 NICEAW------ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275

Query: 310 SRLFLSKNNL--GTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFL-RSIANLSAKITV 366
             + ++ N    G +   D   L       +++++Y+  N      +  S+  +  K+ +
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGM 334

Query: 367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTI 426
           +    NQ+ G +P    + + + +  + YNQ+T    +  G  + ++ L+   N L+  I
Sbjct: 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YI 392

Query: 427 PDTL--GNLTLLNRLFLGFNNLQG-------NVPSSLGNCQNLMTLSRLLDLSGNLLGGS 477
           P+     ++++++ +   +N +          +  +     N+      ++LS N +   
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV----SSINLSNNQISKF 448

Query: 478 IPLEVGNLRNLAEFDLSENHFS-------NEIPVTLSACTTLEYLHLQGNSFSGSLP-LS 529
                     L+  +L  N  +        +          L  + L+ N  +       
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508

Query: 530 LKTLKSIKELDLSRNNLSGQIP------KYLENLLFLAYLNLSYNHFEGEVPR 576
             TL  +  +DLS N+ S   P        L+        +   N    E P 
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (515), Expect = 6e-57
 Identities = 59/412 (14%), Positives = 128/412 (31%), Gaps = 42/412 (10%)

Query: 184 NFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC----KLPLSIWNISSLEII 239
           +   +  + +      GR+PD++ QL  L  L++  +          P  I    S E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 240 SLHSNRFEGSLPLNIGF-NIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQ 298
                 ++ +        +  ++    +  +    S+  S         +    N+ +  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 299 VKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA 358
           V     RL+ L + ++  +    E+            C   E       +          
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAEN-----------ICEAWENENSEYAQQYKTEDLKWD 246

Query: 359 NLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT--------GTIPHAIGELK 410
           NL   +T + + +      +P+ +K L  +    V  N+                    +
Sbjct: 247 NLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 411 NLQGLALVRNSLR-GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDL 469
            +Q + +  N+L+   +  +L  +  L  L   +N L+G    + G+   L +    L+L
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLAS----LNL 360

Query: 470 SGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSA--CTTLEYLHLQGNSFSG--- 524
           + N +        G    +     + N     IP    A   + +  +    N       
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 525 ----SLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572
                L  +     ++  ++LS N +S    +       L+ +NL  N    
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  191 bits (487), Expect = 5e-53
 Identities = 62/413 (15%), Positives = 133/413 (32%), Gaps = 42/413 (10%)

Query: 192 DISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLP 251
           +   +M G +   SL     +  LS+     S ++P +I  ++ LE+++L S+  + +  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 252 LNIGFNIPNVNFLSV---GQNNFTGSLPHSFSNA--SNLQVLDVYKNHFSGQVKIDFNRL 306
           L     I            + ++  +          S+L    +  +     +K      
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 307 SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITV 366
              +++    NN+   S +       +   +++   Y+  + F    +            
Sbjct: 183 LKDTQIGQLSNNITFVSKA-------VMRLTKLRQFYMGNSPFVAENICEAWENEN---- 231

Query: 367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLR--- 423
                 Q   T   +  NL ++    V        +P  +  L  +Q + +  N      
Sbjct: 232 --SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 424 -----GTIPDTLGNLTLLNRLFLGFNNLQ-GNVPSSLGNCQNLMTLSRLLDLSGNLLGGS 477
                            +  +++G+NNL+   V +SL   + L     +L+   N L G 
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL----GMLECLYNQLEGK 345

Query: 478 IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSG-SLPLSLKTLKSI 536
           +P   G+   LA  +L+ N  +            +E L    N           K++  +
Sbjct: 346 LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404

Query: 537 KELDLSRNNLSG-------QIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
             +D S N +          +       + ++ +NLS N          +F  
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK--ELFST 455

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 27/211 (12%), Positives = 57/211 (27%), Gaps = 32/211 (15%)

Query: 391 FGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN- 449
           F  E +        ++     + GL+L      G +PD +G LT L  L LG +  + N 
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE 121

Query: 450 ---VPSSLGNCQNLMTLSRL----------------------LDLSGNLLGGSIPLEVGN 484
               P  +    +     ++                        ++ +    SI      
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 485 LRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN 544
                +     N+ +  +   +   T L   ++  + F                 +    
Sbjct: 182 TLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYA 235

Query: 545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575
                     +NL  L  + +       ++P
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  217 bits (555), Expect = 3e-62
 Identities = 84/441 (19%), Positives = 146/441 (33%), Gaps = 27/441 (6%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
              +L  +DVG N +    P+       L+ +++  N L      +     +L  L +  
Sbjct: 47  RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N+             +L  + L  N    S  L     + N+  L +  N          
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 280 SNASN--LQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCS 337
              +N  L+ L++  N         F+ +  L  LFL+   L     S  + L L    +
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL---GPSLTEKLCLELANT 222

Query: 338 QMEMLYLNTNKFGGVFLRSIANLSA-KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYN 396
            +  L L+ ++       +   L    +T++ +  N ++         L  +  F +EYN
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 397 QLTGTIPHAIGELKNLQGLALVRN---------SLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
            +     H++  L N++ L L R+         SL      +   L  L  L +  N++ 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 448 GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLA-----EFDLSENHFSNEI 502
           G   +      NL    + L LS +       L      +LA       +L++N  S   
Sbjct: 343 GIKSNMFTGLINL----KYLSLSNSFTSL-RTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 503 PVTLSACTTLEYLHLQGNSFSGSLPLS-LKTLKSIKELDLSRNNLSGQIPKYLENLLFLA 561
               S    LE L L  N     L     + L++I E+ LS N            +  L 
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 562 YLNLSYNHFEGEVPRKGVFGN 582
            L L     +        F  
Sbjct: 458 RLMLRRVALKNVDSSPSPFQP 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  213 bits (544), Expect = 1e-60
 Identities = 94/464 (20%), Positives = 164/464 (35%), Gaps = 34/464 (7%)

Query: 154 GLIQRLNLLKLEMIDVGDNQLIGKFPDFIAN--FSALEAIDISANMLGGRIPDSLCQLRS 211
            L   L    +  + + ++QL            ++ L  +D+S N L     DS   L  
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273

Query: 212 LNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNF 271
           L Y  +  NN       S+  + ++  ++L  +  + S+ L                 + 
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA----------------SL 317

Query: 272 TGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLT 331
                 SF     L+ L++  N   G     F  L NL  L LS +     + ++  F++
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 332 LLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIP-SEIKNLVNINA 390
           L    S + +L L  NK   +   + + L   + V+ +G N+I   +   E + L NI  
Sbjct: 378 L--AHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 391 FGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG--TIPDTLGNLTLLNRLFLGFNNLQG 448
             + YN+      ++   + +LQ L L R +L+   + P     L  L  L L  NN+  
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 449 NVPSSLGNCQNLMTLS----RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPV 504
                L   + L  L      L  L  +   G     +  L +L   +L  N F      
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 505 TLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL-FLAYL 563
                  L+ + L  N+ +           S+K L+L +N ++    K        L  L
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 564 NLSYNHFEGEVPRKGVF-----GNRTGIHLIGNERLCGGLEELH 602
           ++ +N F+        F        T I  + +  LC      H
Sbjct: 615 DMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYH 658

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (538), Expect = 9e-60
 Identities = 85/460 (18%), Positives = 164/460 (35%), Gaps = 39/460 (8%)

Query: 144 SNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
           SN+K++A     +       L+ +++  NQ+    P        L  + ++   LG  + 
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212

Query: 204 DSLC---QLRSLNYLSISENNFSCKLPLSIWN--ISSLEIISLHSNRFEGSLPLNIGFNI 258
           + LC      S+  LS+S +  S     +      ++L ++ L  N        +    +
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WL 271

Query: 259 PNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKI---------DFNRLSNL 309
           P + +  +  NN      HS     N++ L++ ++     + +          F  L  L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 310 SRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA---NLSAKITV 366
             L +  N++    ++      + T    ++ L L+ +      L +        + + +
Sbjct: 332 EHLNMEDNDIPGIKSN------MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIP-HAIGELKNLQGLALVRNSLRGT 425
           + +  N+IS         L ++    +  N++   +       L+N+  + L  N     
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 426 IPDTLGNLTLLNRLFLGFNNLQG--NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG 483
             ++   +  L RL L    L+   + PS     +NL     +LDLS N +       + 
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL----TILDLSNNNIANINDDMLE 501

Query: 484 NLRNLAEFDLSENHFS--------NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKS 535
            L  L   DL  N+ +              L   + L  L+L+ N F        K L  
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 536 IKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575
           +K +DL  NNL+        N + L  LNL  N       
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  207 bits (529), Expect = 1e-58
 Identities = 82/429 (19%), Positives = 150/429 (34%), Gaps = 31/429 (7%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
           + ++++  NQL          +S L ++D+  N +    P+   +L  L  L++  N  S
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 224 CKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNAS 283
                +    ++L  + L SN  +            N+  L +  N  + +   +     
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 284 NLQVLDVYKNHFSGQVKIDFN--RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEM 341
           NLQ L +  N        + +    S+L +L LS N +   S              ++  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH------AIGRLFG 199

Query: 342 LYLNTNKFGGVFLRSIANLSA--KITVIGMGDNQISGTIPSEIKNL--VNINAFGVEYNQ 397
           L+LN  + G      +    A   I  + + ++Q+S T  +    L   N+    + YN 
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 398 LTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG---------FNNLQG 448
           L      +   L  L+   L  N+++     +L  L  +  L L            +L  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 449 NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLS- 507
               S    + L      L++  N + G        L NL    LS +  S       + 
Sbjct: 320 IDDFSFQWLKCLEH----LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 508 ---ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY-LENLLFLAYL 563
              A + L  L+L  N  S     +   L  ++ LDL  N +  ++       L  +  +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 564 NLSYNHFEG 572
            LSYN +  
Sbjct: 436 YLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (350), Expect = 1e-34
 Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 12/241 (4%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           L  +  +L   ITV+ +  NQ+     +       + +  V +N ++   P    +L  L
Sbjct: 16  LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
           + L L  N L      T    T L  L L  N++Q    +     +NL      LDLS N
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL----ITLDLSHN 131

Query: 473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSAC--TTLEYLHLQGNSFSGSLPLSL 530
            L  +       L NL E  LS N         L     ++L+ L L  N      P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 531 KTLKSIKELDLSRNNLSGQIPKYL---ENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIH 587
             +  +  L L+   L   + + L        +  L+LS +           F      +
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN--TTFLGLKWTN 249

Query: 588 L 588
           L
Sbjct: 250 L 250

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  114 bits (287), Expect = 1e-26
 Identities = 45/190 (23%), Positives = 66/190 (34%), Gaps = 11/190 (5%)

Query: 395 YNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL 454
           + +LT  +P  +    N+  L L  N LR          + L  L +GFN +    P   
Sbjct: 13  HLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69

Query: 455 GNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEY 514
                L    ++L+L  N L            NL E  L  N               L  
Sbjct: 70  QKLPML----KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 515 LHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLE--NLLFLAYLNLSYNHFEG 572
           L L  N  S +   +   L++++EL LS N +     + L+      L  L LS N  + 
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 573 EVPRKGVFGN 582
             P  G F  
Sbjct: 186 FSP--GCFHA 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (256), Expect = 7e-23
 Identities = 42/162 (25%), Positives = 56/162 (34%), Gaps = 7/162 (4%)

Query: 411 NLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLS 470
           + +        L   +PD L   T +  L L  N L+    ++      L      LD+ 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQL----TSLDVG 57

Query: 471 GNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSL 530
            N +    P     L  L   +L  N  S     T + CT L  LHL  NS         
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 531 KTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572
              K++  LDLS N LS         L  L  L LS N  + 
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.4 bits (225), Expect = 4e-19
 Identities = 30/147 (20%), Positives = 44/147 (29%), Gaps = 9/147 (6%)

Query: 436 LNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSE 495
                     L   VP  L    N+     +L+L+ N L             L   D+  
Sbjct: 6   HEVADCSHLKLT-QVPDDLPT--NI----TVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 496 NHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLE 555
           N  S   P        L+ L+LQ N  S     +     ++ EL L  N++         
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 556 NLLFLAYLNLSYNHFEGEVPRKGVFGN 582
               L  L+LS+N         G    
Sbjct: 119 KQKNLITLDLSHNGLSSTKL--GTQVQ 143

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  199 bits (507), Expect = 5e-56
 Identities = 78/443 (17%), Positives = 161/443 (36%), Gaps = 37/443 (8%)

Query: 160 NLLKLEMIDVGDNQLIG-KFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNY---- 214
           +L  L+ ++V  N +   K P++ +N + LE +D+S+N +       L  L  +      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 215 LSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSV------GQ 268
           L +S N  +  +    +    L  ++L +N    ++       +  +    +       +
Sbjct: 182 LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 269 NNFTGSLPHSFSNASNLQVLDVYKNH---FSGQVKIDFNRLSNLSRLFLSKNNLGTEST- 324
            N       +     NL + +    +   +   +   FN L+N+S   L    +      
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 325 ---SDLDFLTLLTN-------CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQI 374
                   L L+              +  L      G    S  +L   +  + +  N +
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNGL 359

Query: 375 S--GTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTLG 431
           S  G          ++    + +N +  T+      L+ L+ L    ++L+         
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 432 NLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAE 490
           +L  L  L +   + +           +L     +L ++GN    +   ++   LRNL  
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSL----EVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 491 FDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQI 550
            DLS+       P   ++ ++L+ L++  N+F        K L S++ LD S N++    
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 551 PKYLENLL-FLAYLNLSYNHFEG 572
            + L++    LA+LNL+ N F  
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  196 bits (500), Expect = 5e-55
 Identities = 73/449 (16%), Positives = 151/449 (33%), Gaps = 44/449 (9%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANML-GGRIPDSLCQLRSLNYLSIS 218
            L  L+ +   +  L       I +   L+ ++++ N++   ++P+    L +L +L +S
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 219 ENNFSCKLPLSIWNISSLEI----ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS 274
            N         +  +  + +    + L  N      P    F    ++ L++  N  + +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDSLN 215

Query: 275 LP-HSFSNASNLQVLDVYKNHFSGQVKI---DFNRLSNLSRLFLSKNNLGTESTSDLDFL 330
           +        + L+V  +    F  +  +   D + L  L  L + +  L        D +
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 331 TLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINA 390
            L    + +    L +       ++  +        + + + +       ++K+L  +  
Sbjct: 276 DLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLT- 331

Query: 391 FGVEYNQLTGTIPHAIGELKNLQGLALVRNSL--RGTIPDTLGNLTLLNRLFLGFNNLQG 448
               +    G    +  +L +L+ L L RN L  +G    +    T L  L L FN +  
Sbjct: 332 ----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 449 NVPSSLGNCQNLMTLS---------------------RLLDLSGNLLGGSIPLEVGNLRN 487
            + S+    + L  L                        LD+S      +       L +
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 488 LAEFDLSENHFSNEI-PVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546
           L    ++ N F     P   +    L +L L         P +  +L S++ L++S NN 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 547 SGQIPKYLENLLFLAYLNLSYNHFEGEVP 575
                   + L  L  L+ S NH      
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  186 bits (473), Expect = 3e-51
 Identities = 70/431 (16%), Positives = 141/431 (32%), Gaps = 33/431 (7%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           +  +L+++D+   ++         + S L  + ++ N +      +   L SL  L   E
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
            N +      I ++ +L+ +++  N  +         N+ N+  L +  N          
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 280 SNASNLQV----LDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTN 335
                + +    LD+  N  +      F  +  L +L L  N               +  
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT-----CIQG 223

Query: 336 CSQMEMLYLNTNKFGGV--FLRSIANLSAKITVIGMGDNQIS------GTIPSEIKNLVN 387
            + +E+  L   +F       +   +    +  + + + +++        I      L N
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
           +++F +    +      +       Q L LV           L +L  L      F + +
Sbjct: 284 VSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNK 336

Query: 448 GNVPSSLGNCQNLMTLSRLLDLSGNLLG--GSIPLEVGNLRNLAEFDLSENHFSNEIPVT 505
           G    S  +  +L      LDLS N L   G          +L   DLS N     +   
Sbjct: 337 GGNAFSEVDLPSL----EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 506 LSACTTLEYLHLQGNSFSGSLPLS-LKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLN 564
                 LE+L  Q ++       S   +L+++  LD+S  +           L  L  L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 565 LSYNHFEGEVP 575
           ++ N F+    
Sbjct: 452 MAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  176 bits (449), Expect = 5e-48
 Identities = 79/425 (18%), Positives = 139/425 (32%), Gaps = 35/425 (8%)

Query: 185 FSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN 244
             + + +D+S N L      S      L  L +S          +  ++S L  + L  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHF-SGQVKIDF 303
             +          + ++  L   + N          +   L+ L+V  N   S ++   F
Sbjct: 87  PIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 304 NRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAK 363
           + L+NL  L LS N + +   +DL  L  +        L L+ N    +   +   +   
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--LNLSLDLSLNPMNFIQPGAFKEIR-- 201

Query: 364 ITVIGMGDNQISGTIPSEI-------KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLA 416
           +  + + +N  S  +           +    +         L      A+  L NL    
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 417 LVRNSL---RGTIPDTLGNLTLLNRLFLGFNNLQGNVPSS-LGNCQNL------------ 460
                L      I D    LT ++   L    ++     S     Q+L            
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 461 MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENH--FSNEIPVTLSACTTLEYLHLQ 518
           + L  L  L+     G       +L +L   DLS N   F      +    T+L+YL L 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 519 GNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY-LENLLFLAYLNLSYNHFEGEVPRK 577
            N     +  +   L+ ++ LD   +NL          +L  L YL++S+ H        
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-- 438

Query: 578 GVFGN 582
           G+F  
Sbjct: 439 GIFNG 443

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  162 bits (413), Expect = 4e-43
 Identities = 67/423 (15%), Positives = 134/423 (31%), Gaps = 34/423 (8%)

Query: 159 LNLLKLEMIDVGDNQLIGKFP-DFIANFSALEAIDISANMLGGRI---PDSLCQLRSLNY 214
              ++L  + + +N          I   + LE   +                  L  L  
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 215 LSISENNFSC------KLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQ 268
           L+I E   +        +      ++++   SL S   E     +          L +  
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVN 313

Query: 269 NNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLD 328
             F         +   L           G        L +L  L LS+N L  +      
Sbjct: 314 CKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 329 FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVN 387
                   + ++ L L+ N    +   +   L  ++  +    + +       +  +L N
Sbjct: 369 DF----GTTSLKYLDLSFNGVITMS-SNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTI-PDTLGNLTLLNRLFLGFNNL 446
           +    + +             L +L+ L +  NS +    PD    L  L  L L    L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 447 QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTL 506
           +   P++  +  +L    ++L++S N            L +L   D S NH        L
Sbjct: 483 EQLSPTAFNSLSSL----QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 507 SAC-TTLEYLHLQGNSFSGSLPLS--LKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYL 563
               ++L +L+L  N F+ +      L+ +K  ++L +    +    P   + +  L+ L
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS-L 597

Query: 564 NLS 566
           N++
Sbjct: 598 NIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (354), Expect = 3e-35
 Identities = 57/332 (17%), Positives = 107/332 (32%), Gaps = 24/332 (7%)

Query: 249 SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSN 308
            +P N+     +   L +  N       +SF +   LQVLD+ +          +  LS+
Sbjct: 21  KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 309 LSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIG 368
           LS L L+ N + + +      L+ L        L         +    I +L   +  + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQK------LVAVETNLASLENFPIGHLK-TLKELN 130

Query: 369 MGDNQI-SGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQ----GLALVRNSLR 423
           +  N I S  +P    NL N+    +  N++       +  L  +      L L  N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 424 GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG 483
              P     +  L++L L  N    NV  +       + + RL+       G     +  
Sbjct: 191 FIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 484 NLRNLAEFDLSENHFS------NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIK 537
            L  L    + E   +      ++I    +  T +    L   +       S       +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQ 307

Query: 538 ELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569
            L+L            L++L  L + +    +
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  129 bits (327), Expect = 8e-32
 Identities = 45/227 (19%), Positives = 77/227 (33%), Gaps = 12/227 (5%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
              I  NL      + +  N +         +   +    +   ++      A   L +L
Sbjct: 19  FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
             L L  N ++         L+ L +L     NL       +G+ + L    + L+++ N
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL----KELNVAHN 134

Query: 473 LL-GGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEY----LHLQGNSFSGSLP 527
           L+    +P    NL NL   DLS N   +     L     +      L L  N  +   P
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 528 LSLKTLKSIKELDLSRNNLSGQIPKY-LENLLFLAYLNLSYNHFEGE 573
            + K +  + +L L  N  S  + K  ++ L  L    L    F  E
Sbjct: 195 GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  108 bits (272), Expect = 5e-25
 Identities = 53/244 (21%), Positives = 95/244 (38%), Gaps = 8/244 (3%)

Query: 144 SNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
           S + L               L+ +D+  N +I    +F+     LE +D   + L     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSE 413

Query: 204 DS-LCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVN 262
            S    LR+L YL IS  +           +SSLE++ +  N F+ +   +I   + N+ 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 263 FLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTE 322
           FL + Q       P +F++ S+LQVL++  N+F       +  L++L  L  S N++   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI--- 530

Query: 323 STSDLDFLTLLTNCSQMEMLYLNTNKF-GGVFLRSIANLSAKITVIGMGDNQISGTIPSE 381
                    L    S +  L L  N F      +S          + +   ++    PS+
Sbjct: 531 --MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

Query: 382 IKNL 385
            + +
Sbjct: 589 KQGM 592

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  200 bits (510), Expect = 5e-55
 Identities = 69/459 (15%), Positives = 149/459 (32%), Gaps = 58/459 (12%)

Query: 144 SNDKLEAGNLGLIQRLNLLKLEMIDVGD-NQLIGKFPDFIANFSALEAIDISANMLGGRI 202
            +       +  I++ + + L+   +G+    I      I   + L+ I  + +      
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 203 PDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVN 262
                +  + +Y    EN       LS  N+  L  + L++      LP  +  ++P + 
Sbjct: 465 IAVDWEDANSDYAKQYEN-----EELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQ 518

Query: 263 FLSVGQNNFTG---------SLPHSFSNASNLQVLDVYKNHFSG-QVKIDFNRLSNLSRL 312
            L++  N              L         +Q+  +  N+           ++  L  L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 313 FLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDN 372
               N +          L       ++  L L+ N+   +        + ++  +G   N
Sbjct: 579 DCVHNKVRH--------LEAFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGLGFSHN 629

Query: 373 QISGTIPS--EIKNLVNINAFGVEYNQLTGTIPHA-----IGELKNLQGLALVRNSLRGT 425
           ++   IP+    K++  + +    YN++     +        +  N   + L  N ++  
Sbjct: 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 426 IPDTLGNLTLLNRLFLGFNNLQ-------GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSI 478
             +     + ++ + L  N +             +  N   L      +DL  N L  S+
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL----TTIDLRFNKLT-SL 743

Query: 479 P--LEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQ------GNSFSGSLPLSL 530
                   L  L+  D+S N FS   P      + L+   ++      GN      P  +
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 531 KTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569
            T  S+ +L +  N++     K       L  L+++ N 
Sbjct: 803 TTCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (472), Expect = 5e-50
 Identities = 60/434 (13%), Positives = 120/434 (27%), Gaps = 51/434 (11%)

Query: 151 GNLGLIQRLNL-----------LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLG 199
             L  +Q +             +  E  +    +         +N   L  +++      
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 200 GRIPDSLCQLRSLNYLSISENNFS---------CKLPLSIWNISSLEIISLHSNRFEGSL 250
            ++PD L  L  L  L+I+ N             +L         ++I  +  N  E   
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563

Query: 251 PLNIGF-NIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNL 309
           P +     +  +  L    N        +F     L  L +  N      +        +
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 310 SRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSA----KIT 365
             L  S N L       +  +    +   M  +  + NK G        ++        +
Sbjct: 622 EGLGFSHNKL-----KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 366 VIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT-------GTIPHAIGELKNLQGLALV 418
            + +  N+I             I+   +  N +T                   L  + L 
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 419 RNSLRGTIPDTL--GNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTL--SRLLDLSGNLL 474
            N L  ++ D      L  L+ + + +N      P+   N   L         D  GN +
Sbjct: 737 FNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794

Query: 475 GGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF-SGSLPLSLKTL 533
               P  +    +L +  +  N    ++   L     L  L +  N   S  +      +
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYI 851

Query: 534 KS-IKELDLSRNNL 546
           ++ +  L   +   
Sbjct: 852 EAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  178 bits (454), Expect = 1e-47
 Identities = 53/415 (12%), Positives = 115/415 (27%), Gaps = 46/415 (11%)

Query: 181 FIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIIS 240
            + N   +  + ++     GR+PD++ QL  L  LS   ++ +    L      + ++  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 241 LHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG--- 297
              +R               +N   + Q+    +             + +          
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLKDTQIGNLTN 435

Query: 298 ---QVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFL 354
               +     RL+ L  ++ + +             T        E    +  K      
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPF-----------TYDNIAVDWEDANSDYAKQYENEE 484

Query: 355 RSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG---------TIPHA 405
            S +NL   +T + + +      +P  + +L  + +  +  N+             +   
Sbjct: 485 LSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 406 IGELKNLQGLALVRNSLRG-TIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLS 464
                 +Q   +  N+L       +L  +  L  L    N +      + G    L    
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKL---- 597

Query: 465 RLLDLSGNLLGGSIPLEVG-NLRNLAEFDLSENHFSNEIP--VTLSACTTLEYLHLQGNS 521
             L L  N +   IP +       +     S N     IP      +   +  +    N 
Sbjct: 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK 655

Query: 522 FSG-----SLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
                   S  +      +   + LS N +     +       ++ + LS N   
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  173 bits (441), Expect = 5e-46
 Identities = 54/457 (11%), Positives = 127/457 (27%), Gaps = 52/457 (11%)

Query: 156 IQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYL 215
           +   N  ++  + +      G+ PD I   + L+ +    +           +  + +  
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 216 SISENNFSCKL-PLSIWNISSLEIISLHSNRFE-----GSLPLNIGFNIPNVNFLSVGQN 269
              ++        + +     L +  L  +          +  +   ++ +         
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG--NLT 434

Query: 270 NFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDF 329
           N    +  +    + LQ++    + F+          +N       +N   +        
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS-------- 486

Query: 330 LTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISG---------TIPS 380
               +N   +  + L            + +L  ++  + +  N+             +  
Sbjct: 487 ---WSNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 381 EIKNLVNINAFGVEYNQLTG-TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRL 439
           +      I  F + YN L       ++ ++  L  L  V N +     +  G    L  L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDL 600

Query: 440 FLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP--LEVGNLRNLAEFDLSENH 497
            L +N ++  +P       + +     L  S N L   IP      ++  +   D S N 
Sbjct: 601 KLDYNQIE-EIPEDFCAFTDQV---EGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 498 FSNEIPVTLSA-----CTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS----- 547
             +E      +           + L  N           T   I  + LS N ++     
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 548 --GQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
                    +N   L  ++L +N     +        
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  165 bits (420), Expect = 3e-43
 Identities = 62/410 (15%), Positives = 131/410 (31%), Gaps = 36/410 (8%)

Query: 191 IDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSL 250
            +   +M G +    L     +  LS++      ++P +I  ++ L+++S  ++    S 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 251 PLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLS 310
            L     +                          L + D+ ++  +   ++    +   S
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP--IKKDS 421

Query: 311 RLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMG 370
           R+ L    +G  +         +   ++++++Y   + F         N++         
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD------NIAVDWEDANSD 475

Query: 371 DNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG------ 424
             +          NL ++    +        +P  + +L  LQ L +  N          
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 425 ---TIPDTLGNLTLLNRLFLGFNNLQG-NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL 480
               + D       +   ++G+NNL+     +SL     L     LLD   N +      
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL----GLLDCVHNKV--RHLE 589

Query: 481 EVGNLRNLAEFDLSENHFSNEIPVTLSACTT-LEYLHLQGNSFSGSLP--LSLKTLKSIK 537
             G    L +  L  N    EIP    A T  +E L    N     +P   + K++  + 
Sbjct: 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647

Query: 538 ELDLSRNNLSGQIPKYLE-----NLLFLAYLNLSYNHFEGEVPRKGVFGN 582
            +D S N +  +             +  + + LSYN  +       +F  
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT--ELFAT 695

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (280), Expect = 9e-26
 Identities = 34/257 (13%), Positives = 77/257 (29%), Gaps = 23/257 (8%)

Query: 359 NLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALV 418
           + + ++T + +      G +P  I  L  +       +  T +      E          
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 419 RNSLR-------GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSG 471
           ++ +R             L    LL         ++     S  + ++       +    
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-----IGNLT 434

Query: 472 NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLK 531
           N +   I   +  L  L     + + F+ +           E  +        +  LS  
Sbjct: 435 NRIT-FISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWS 488

Query: 532 TLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGN 591
            LK + +++L       Q+P +L +L  L  LN++ N        K  +       L  +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-----LADD 543

Query: 592 ERLCGGLEELHLPSCHF 608
           E     ++  ++   + 
Sbjct: 544 EDTGPKIQIFYMGYNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 1/117 (0%)

Query: 460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQG 519
           L  +   LD               +  N   F+   + + ++  V L     +  L L G
Sbjct: 274 LKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNGRVTGLSLAG 332

Query: 520 NSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR 576
               G +P ++  L  +K L    ++ +     + +  L         +       +
Sbjct: 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  189 bits (482), Expect = 1e-52
 Identities = 80/418 (19%), Positives = 141/418 (33%), Gaps = 14/418 (3%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
            L+ L  +D+   Q+     D   +   L+ + ++AN L      +L   ++L +L   +
Sbjct: 55  RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
              S    + + N  +LE + L SN    S+ L  GF    +  L    N          
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 280 SNASNLQVLDVYKNH-FSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQ 338
           S+      L +  N      ++      +    L              L   T + +   
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST-IQSLWL 232

Query: 339 MEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL 398
                ++           +  +S  +  I +  +       +       +    +    L
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMS--VESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPS-SLGNC 457
           +  +P  +  L  L+ L L  N        +  N   L  L +  N  +  + +  L N 
Sbjct: 291 S-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 458 QNLMTLSRLLDLSGNLLGGS--IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYL 515
           +NL      LDLS + +  S    L++ NL +L   +LS N   +        C  LE L
Sbjct: 350 ENLRE----LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 516 HLQGNSFSGSLPLS-LKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572
            L           S  + L  +K L+LS + L     +  + L  L +LNL  NHF  
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  180 bits (460), Expect = 2e-49
 Identities = 85/427 (19%), Positives = 160/427 (37%), Gaps = 24/427 (5%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSIS- 218
           N   LE + +G N +             L+ +D   N +     + +  L+    LS++ 
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 219 ENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFN-IPNVNFLSVGQNNFTGSLPH 277
             N    +    ++ +  + ++    +    +   +  + I ++   +    +     P 
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 278 SFSN--ASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTN 335
            F      +++ +++ K++F       F+  S L  L L+  +L           + L  
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------LPSGLVG 299

Query: 336 CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSE-IKNLVNINAFGVE 394
            S ++ L L+ NKF  +   S +N    +T + +  N     + +  ++NL N+    + 
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 395 YNQLT--GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP- 451
           ++ +         +  L +LQ L L  N       +       L  L L F  L+     
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 452 SSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPV---TLSA 508
           S   N   L    ++L+LS +LL  S       L  L   +L  NHF         +L  
Sbjct: 419 SPFQNLHLL----KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 509 CTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
              LE L L     S     +  +LK +  +DLS N L+    + L +L  + YLNL+ N
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533

Query: 569 HFEGEVP 575
           H    +P
Sbjct: 534 HISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  175 bits (447), Expect = 9e-48
 Identities = 75/405 (18%), Positives = 133/405 (32%), Gaps = 20/405 (4%)

Query: 185 FSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN 244
            ++ E ++ S N+L      +  +L +L +L ++          +  +   L+ + L +N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFN 304
                +          +  L   Q   +        N   L+ L +  NH S        
Sbjct: 92  PLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 305 RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKI 364
               L  L    N +   S  D+  L   TN S    L LN N   G+   +  +     
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS----LNLNGNDIAGIEPGAFDSAV--F 204

Query: 365 TVIGMGDNQISGTIPSEIKN--LVNINAFGVEYNQLTGTIPHAIGELK--NLQGLALVRN 420
             +  G  Q    I   +KN  + ++     E        P     L   +++ + L ++
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 421 SLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL 480
                  +T    + L  L L   +L   +PS L     L    + L LS N       +
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL----KKLVLSANKFENLCQI 319

Query: 481 EVGNLRNLAEFDLSENHFSNEI-PVTLSACTTLEYLHLQGN--SFSGSLPLSLKTLKSIK 537
              N  +L    +  N    E+    L     L  L L  +    S    L L+ L  ++
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 538 ELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
            L+LS N       +  +    L  L+L++   +     +  F N
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-KDAQSPFQN 423

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  168 bits (427), Expect = 5e-45
 Identities = 77/428 (17%), Positives = 142/428 (33%), Gaps = 22/428 (5%)

Query: 154 GLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSL--CQLRS 211
             +  L       +++  N  I        + +  ++++         I   L    ++S
Sbjct: 171 EDMSSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 212 LNYLSISENNFSCKLPLSIWNIS--SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQN 269
           L   +  + +     P     +   S+E I+L  + F  ++  N       +  L +   
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTAT 288

Query: 270 NFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDF 329
           + +  LP      S L+ L +  N F    +I  +   +L+ L +  N    E  +    
Sbjct: 289 HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-- 345

Query: 330 LTLLTNCSQMEMLYLNTNKFGGVFL--RSIANLSAKITVIGMGDNQISGTIPSEIKNLVN 387
              L N   +  L L+ +           + NLS  +  + +  N+         K    
Sbjct: 346 ---LENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 388 INAFGVEYNQLTGTIPH-AIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNL 446
           +    + + +L           L  L+ L L  + L  +       L  L  L L  N+ 
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 447 QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTL 506
                    + Q L  L  +L LS   L         +L+ +   DLS N  ++     L
Sbjct: 462 PKGNIQKTNSLQTLGRL-EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 507 SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLS 566
           S    + YL+L  N  S  LP  L  L   + ++L +N L         N+ FL +   +
Sbjct: 521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKEN 575

Query: 567 YNHFEGEV 574
               E   
Sbjct: 576 MQKLEDTE 583

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (270), Expect = 1e-24
 Identities = 38/223 (17%), Positives = 57/223 (25%), Gaps = 10/223 (4%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           L  I   L      +    N +     +    L+N+    +   Q+             L
Sbjct: 24  LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
             L L  N L       L     L  LF     +       L N + L      L L  N
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL----ESLYLGSN 139

Query: 473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT--TLEYLHLQGNSFSGSLPLSL 530
            +      +      L   D   N         +S+    T   L+L GN  +  +    
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGA 198

Query: 531 KTLKSIKELDLSRNNLSGQIPKYLENLLF--LAYLNLSYNHFE 571
                 + L+         I K L+N     L          E
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (264), Expect = 6e-24
 Identities = 41/209 (19%), Positives = 65/209 (31%), Gaps = 9/209 (4%)

Query: 395 YNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL 454
              L   IP  +    + + L    N L      T   L  L  L L    +      + 
Sbjct: 21  NLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF 77

Query: 455 GNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEY 514
            +   L TL     L+ N L       +   + L      +   S+   + L    TLE 
Sbjct: 78  QSQHRLDTL----VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 515 LHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL--LFLAYLNLSYNHFEG 572
           L+L  N  S          + +K LD   N +     + + +L       LNL+ N   G
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 573 EVPRKGVFGNRTGIHLIGNERLCGGLEEL 601
             P          ++  G + L    + L
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.6 bits (202), Expect = 3e-16
 Identities = 30/134 (22%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 439 LFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHF 498
                  L   +P +L N  +       L+ S N+L          L NL   DL+    
Sbjct: 17  YNCENLGLN-EIPGTLPN--ST----ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 499 SNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558
                 T  +   L+ L L  N        +L   K++K L   +  +S      L N  
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 559 FLAYLNLSYNHFEG 572
            L  L L  NH   
Sbjct: 130 TLESLYLGSNHISS 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  166 bits (423), Expect = 2e-44
 Identities = 73/441 (16%), Positives = 148/441 (33%), Gaps = 39/441 (8%)

Query: 160 NLLKLEMIDVGDNQLIG-KFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLN----Y 214
            L+ L+ ++V  N +   K P + +N + L  +D+S N +     + L  LR        
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 215 LSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS 274
           L +S N     +    +    L  ++L  N    ++      N+  ++   +    F   
Sbjct: 186 LDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 275 L------PHSFSNASNLQV--LDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT----E 322
                  P       ++ +    +   +      + F+ L+N+S + L+  ++       
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304

Query: 323 STSDLDFLTLLTN---------CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQ 373
                  L+++              ++ L L  NK    F      L   ++ + +  N 
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALP-SLSYLDLSRNA 361

Query: 374 ISGTIPSEIKNL--VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTL 430
           +S +      +L   ++    + +N     +      L+ LQ L    ++L+        
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 431 GNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLA 489
            +L  L  L + + N + +         +L      L ++GN    +    V  N  NL 
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSL----NTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 490 EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQ 549
             DLS+                L+ L++  N+           L S+  LD S N +   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 550 IPKYLENLLFLAYLNLSYNHF 570
                     LA+ NL+ N  
Sbjct: 537 KGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  163 bits (415), Expect = 2e-43
 Identities = 78/443 (17%), Positives = 147/443 (33%), Gaps = 39/443 (8%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
            L  L  + +  N +    P   +  ++LE +      L       + QL +L  L+++ 
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137

Query: 220 NNF-SCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVG---QNNFTGSL 275
           N   SCKLP    N+++L  + L  N  + ++ +N    +     +++      N    +
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFI 196

Query: 276 PHSFSNASNLQVLDVYKNHFSGQV-KIDFNRLSNLSRLFLSKNNL-GTESTSDLDFLTLL 333
                    L  L +  N  S  + K     L+ L    L         +    +   + 
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 334 TNCS-QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFG 392
             C   ++   L         +     L+  ++ + +    I      ++       +  
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSI--KYLEDVPKHFKWQSLS 313

Query: 393 VEYNQLT-------------------GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNL 433
           +   QL                    G+I      L +L  L L RN+L  +   +  +L
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 434 TL--LNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAE 490
               L  L L FN     + ++    + L      LD   + L          +L  L  
Sbjct: 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQH----LDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 491 FDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLS-LKTLKSIKELDLSRNNLSGQ 549
            D+S  +   +        T+L  L + GNSF  +   +      ++  LDLS+  L   
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 550 IPKYLENLLFLAYLNLSYNHFEG 572
                + L  L  LN+S+N+   
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (395), Expect = 1e-40
 Identities = 83/425 (19%), Positives = 149/425 (35%), Gaps = 36/425 (8%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
            + ID+  N L        +NFS L+ +D+S   +      +   L  L+ L ++ N   
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 224 CKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTG-SLPHSFSNA 282
              P S   ++SLE +     +        IG  +  +  L+V  N      LP  FSN 
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 283 SNLQVLDVYKNHFSGQVKIDFNRLSNLS----RLFLSKNNLGTESTSDLDFLTLLTNCSQ 338
           +NL  +D+  N+       D   L         L +S N +          + L      
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE---- 208

Query: 339 MEMLYLNTNKFGGVFLRSIANLSAKITVIGM------GDNQISGTIPSEIKNLVNI--NA 390
              L L  N      +++     A + V  +       +  +    PS ++ L ++  + 
Sbjct: 209 ---LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 391 FGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNV 450
           F + Y             L N+  ++L   S+     + +        L +    L+   
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 451 PSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLS--A 508
              L   ++       L L+ N    SI  +   L +L+  DLS N  S     + S   
Sbjct: 324 TLDLPFLKS-------LTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 509 CTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY-LENLLFLAYLNLSY 567
             +L +L L  N     +  +   L+ ++ LD   + L          +L  L YL++SY
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 568 NHFEG 572
            + + 
Sbjct: 434 TNTKI 438

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (356), Expect = 1e-35
 Identities = 72/414 (17%), Positives = 133/414 (32%), Gaps = 48/414 (11%)

Query: 201 RIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPN 260
           ++PD +    S   + +S N        S  N S L+ + L     E          + +
Sbjct: 25  KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHH 81

Query: 261 VNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLG 320
           ++ L +  N      P SFS  ++L+ L   +   +        +L  L +L ++ N + 
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI- 140

Query: 321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV---FLRSIANLSAKITVIGMGDNQISGT 377
                        +N + +  + L+ N    +    L+ +         + M  N I   
Sbjct: 141 ----HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-F 195

Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIP-HAIGELKNLQGLALVRNSLRGTI------PDTL 430
           I  +    + ++   +  N  +  I    +  L  L    L+    +         P  +
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 431 GNLTLL--NRLFLGFNNLQGNVPSSLGNCQNLMTLS------------------RLLDLS 470
             L  +  +   L + N   +         N+  +S                  + L + 
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSII 315

Query: 471 GNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGN--SFSGSLPL 528
              L         +L  L    L+ N  S  I     A  +L YL L  N  SFSG    
Sbjct: 316 RCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSY 370

Query: 529 SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
           S     S++ LDLS N     +      L  L +L+  ++  +  V     F +
Sbjct: 371 SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR-VTEFSAFLS 422

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  116 bits (292), Expect = 2e-27
 Identities = 69/346 (19%), Positives = 116/346 (33%), Gaps = 33/346 (9%)

Query: 239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQ 298
                 +    +P +I     +   + +  N       +SFSN S LQ LD+ +      
Sbjct: 16  YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 299 VKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA 358
               ++ L +LS L L+ N + + S      LT L N      L     K   +    I 
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN------LVAVETKLASLESFPIG 125

Query: 359 NLSAKITVIGMGDNQISG-TIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLAL 417
            L   +  + +  N I    +P+   NL N+    + YN +     + +  L+    + L
Sbjct: 126 QLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

Query: 418 V----RNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL 473
                 N +          + L   L L  N    N+  +    QNL  L  +  L    
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTC--LQNLAGL-HVHRLILGE 240

Query: 474 LGGSIPLEV------GNLRNLA--EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGS 525
                 LE+        L ++   EF L+  +  ++  V       +  + L G S    
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY- 299

Query: 526 LPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
               +      + L + R  L  Q P    +L FL  L L+ N   
Sbjct: 300 -LEDVPKHFKWQSLSIIRCQLK-QFPT--LDLPFLKSLTLTMNKGS 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (381), Expect = 1e-39
 Identities = 94/415 (22%), Positives = 161/415 (38%), Gaps = 46/415 (11%)

Query: 154 GLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLN 213
             + + +L ++  +      +  K  D +   + L  I+ S N L    P  L  L  L 
Sbjct: 38  DTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLV 93

Query: 214 YLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTG 273
            + ++ N  +   PL+  N+++L  ++L +N+     PL    N+ N+N L +  N  + 
Sbjct: 94  DILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISD 148

Query: 274 SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333
               + S  ++LQ L                 L+ L RL +S N +     SD+  L  L
Sbjct: 149 --ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKV-----SDISVLAKL 198

Query: 334 TNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGV 393
           TN   +E L    N+     +  +  L+  +  + +  NQ+       + +L N+    +
Sbjct: 199 TN---LESLIATNNQISD--ITPLGILT-NLDELSLNGNQLKD--IGTLASLTNLTDLDL 250

Query: 394 EYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSS 453
             NQ++   P  +  L  L  L L  N +    P  L  LT L  L L  N L+    S 
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISP 304

Query: 454 LGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLE 513
           + N +NL      L L  N +    P+   +L  L       N  S+    +L+  T + 
Sbjct: 305 ISNLKNL----TYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 514 YLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
           +L    N  S   PL+   L  I +L L+    +     Y  N   ++  N   N
Sbjct: 357 WLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKAN---VSIPNTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (360), Expect = 8e-37
 Identities = 100/416 (24%), Positives = 161/416 (38%), Gaps = 42/416 (10%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           NL KL  I + +NQ+       +AN + L  + +  N +     D L  L +LN L +S 
Sbjct: 88  NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSS 143

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N  S    LS   ++SL+ +S   N+     PL    N+  +  L +  N  +       
Sbjct: 144 NTISDISALS--GLTSLQQLSF-GNQVTDLKPLA---NLTTLERLDISSNKVSD--ISVL 195

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
           +  +NL+ L    N  S         L+NL  L L+ N L          +  L + + +
Sbjct: 196 AKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKD--------IGTLASLTNL 245

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
             L L  N+     L  ++ L+ K+T + +G NQIS   P  +  L  +    +  NQL 
Sbjct: 246 TDLDLANNQISN--LAPLSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQN 459
              P  I  LKNL  L L  N++    P  + +LT L RLF   N +     SSL N  N
Sbjct: 301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN 354

Query: 460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQG 519
           +      L    N +    PL   NL  + +  L++  ++N      +  +    +    
Sbjct: 355 I----NWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408

Query: 520 NSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575
            +     P ++    S  E D++ N  S    +          +      F G V 
Sbjct: 409 GAL--IAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (297), Expect = 2e-28
 Identities = 72/312 (23%), Positives = 122/312 (39%), Gaps = 35/312 (11%)

Query: 261 VNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLG 320
           +   ++ Q+     +  + +  +      + K + +    +    L  ++ L   +  + 
Sbjct: 3   LGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI- 58

Query: 321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS 380
                 +D +  L N   +  +  + N+     +  + NL+ K+  I M +NQI+   P 
Sbjct: 59  ----KSIDGVEYLNN---LTQINFSNNQLTD--ITPLKNLT-KLVDILMNNNQIADITP- 107

Query: 381 EIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLF 440
            + NL N+    +  NQ+T   P  +  L NL  L L  N++       L  LT L +L 
Sbjct: 108 -LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS 162

Query: 441 LGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSN 500
            G N +       L N   L      LD+S N +  S    +  L NL     + N  S+
Sbjct: 163 FG-NQVTD--LKPLANLTTL----ERLDISSNKV--SDISVLAKLTNLESLIATNNQISD 213

Query: 501 EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFL 560
             P  L   T L+ L L GN        +L +L ++ +LDL+ N +S   P  L  L  L
Sbjct: 214 ITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 561 AYLNLSYNHFEG 572
             L L  N    
Sbjct: 268 TELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  110 bits (276), Expect = 8e-26
 Identities = 70/365 (19%), Positives = 134/365 (36%), Gaps = 46/365 (12%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           NL  L  +++  N +       ++  ++L+ +     +        L  L +L  L IS 
Sbjct: 132 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISS 186

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N  S      +  +++LE +   +N+     PL     + N++ LS+  N        + 
Sbjct: 187 NKVSD--ISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTL 239

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLT----- 334
           ++ +NL  LD+  N  S       + L+ L+ L L  N +   + S L  LT LT     
Sbjct: 240 ASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQI--SNISPLAGLTALTNLELN 295

Query: 335 -----------NCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIK 383
                      N   +  L L  N      +  +++L+ K+  +   +N++S    S + 
Sbjct: 296 ENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLT-KLQRLFFYNNKVSD--VSSLA 350

Query: 384 NLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGF 443
           NL NIN     +NQ++   P  +  L  +  L L   +      +   N+++ N +    
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408

Query: 444 NNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIP 503
             L    P+++ +  +        D++ NL                        FS  + 
Sbjct: 409 GAL--IAPATISDGGSY----TEPDITWNLP-SYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

Query: 504 VTLSA 508
             L A
Sbjct: 462 QPLKA 466

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 7e-07
 Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 462 TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS 521
            L          +          L    +  L + + ++ +    +    +  L      
Sbjct: 2   PLGSATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG 57

Query: 522 FSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572
              S+   ++ L ++ +++ S N L+   P  L+NL  L  + ++ N    
Sbjct: 58  IK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  147 bits (373), Expect = 1e-39
 Identities = 80/384 (20%), Positives = 154/384 (40%), Gaps = 39/384 (10%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
              +      +   FPD  A+ +      +    +   +     +L S+  L ++    +
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 224 CKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNAS 283
             +   I  +++LE ++L+ N+     PL+   N+  +  L +G N  T     +  N +
Sbjct: 58  -SIQ-GIEYLTNLEYLNLNGNQITDISPLS---NLVKLTNLYIGTNKITD--ISALQNLT 110

Query: 284 NLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLY 343
           NL+ L + +++ S         L+ +  L L  N+      SDL  L+ +T    +  L 
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHN----LSDLSPLSNMTG---LNYLT 161

Query: 344 LNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIP 403
           +  +K     +  IANL+  +  + +  NQI    P  + +L +++ F    NQ+T   P
Sbjct: 162 VTESKVKD--VTPIANLT-DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

Query: 404 HAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTL 463
             +  +  L  L +  N +    P  L NL+ L  L +G N +     +++ +   L   
Sbjct: 217 --VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKL--- 267

Query: 464 SRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFS 523
            ++L++  N +     L   NL  L    L+ N   NE    +   T L  L L  N  +
Sbjct: 268 -KMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 524 GSLPLSLKTLKSIKELDLSRNNLS 547
              PL+  +L  +   D +   + 
Sbjct: 325 DIRPLA--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (348), Expect = 5e-36
 Identities = 75/361 (20%), Positives = 136/361 (37%), Gaps = 37/361 (10%)

Query: 212 LNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNF 271
              L+      +   P +  +++      L        +       + ++  L V     
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKV 56

Query: 272 TGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLT 331
             S+       +NL+ L++  N  +       + L  L+ L++  N +     +D+  L 
Sbjct: 57  A-SIQ-GIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI-----TDISALQ 107

Query: 332 LLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAF 391
            LTN   +  LYLN +      +  +ANL+ K+  + +G N    +  S + N+  +N  
Sbjct: 108 NLTN---LRELYLNEDNISD--ISPLANLT-KMYSLNLGANHNL-SDLSPLSNMTGLNYL 160

Query: 392 GVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP 451
            V  +++    P  I  L +L  L+L  N +    P  L +LT L+      N +     
Sbjct: 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--I 214

Query: 452 SSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTT 511
           + + N   L      L +  N +    PL   NL  L   ++  N  S+     +   T 
Sbjct: 215 TPVANMTRL----NSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISD--INAVKDLTK 266

Query: 512 LEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
           L+ L++  N  S    L+   L  +  L L+ N L  +  + +  L  L  L LS NH  
Sbjct: 267 LKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 572 G 572
            
Sbjct: 325 D 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (315), Expect = 1e-31
 Identities = 63/320 (19%), Positives = 124/320 (38%), Gaps = 34/320 (10%)

Query: 257 NIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK 316
           ++       + + + T  +        ++  L V     +         L+NL  L L+ 
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNG 75

Query: 317 NNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISG 376
           N +     +D+  L+ L     +  LY+ TNK     + ++ NL+  +  + + ++ IS 
Sbjct: 76  NQI-----TDISPLSNLVK---LTNLYIGTNKI--TDISALQNLT-NLRELYLNEDNISD 124

Query: 377 TIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLL 436
              S + NL  + +  +  N    +    +  +  L  L +  + ++   P  + NLT L
Sbjct: 125 --ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179

Query: 437 NRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSEN 496
             L L +N ++    S L +  +L           N +    P+   N+  L    +  N
Sbjct: 180 YSLSLNYNQIED--ISPLASLTSLHYF----TAYVNQITDITPV--ANMTRLNSLKIGNN 231

Query: 497 HFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLEN 556
             ++  P  L+  + L +L +  N  S  +  ++K L  +K L++  N +S      L N
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQISD--ISVLNN 285

Query: 557 LLFLAYLNLSYNHFEGEVPR 576
           L  L  L L+ N    E   
Sbjct: 286 LSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (285), Expect = 1e-27
 Identities = 60/288 (20%), Positives = 125/288 (43%), Gaps = 27/288 (9%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           NL+KL  + +G N++       + N + L  + ++ + +       L  L  +  L++  
Sbjct: 86  NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGA 141

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N+        + N++ L  +++  ++ +   P+    N+ ++  LS+  N      P   
Sbjct: 142 NHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIA---NLTDLYSLSLNYNQIEDISP--L 195

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
           ++ ++L     Y N  +         ++ L+ L +  N +     +DL     L N SQ+
Sbjct: 196 ASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKI-----TDLSP---LANLSQL 245

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
             L + TN+     + ++ +L+ K+ ++ +G NQIS    S + NL  +N+  +  NQL 
Sbjct: 246 TWLEIGTNQISD--INAVKDLT-KLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLG 300

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
                 IG L NL  L L +N +    P  L +L+ ++        ++
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  139 bits (352), Expect = 8e-37
 Identities = 53/309 (17%), Positives = 102/309 (33%), Gaps = 22/309 (7%)

Query: 273 GSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTL 332
           GS  H   ++S  + L       S  ++   + LS   R + +  N              
Sbjct: 2   GSSHHHHHHSSGRENLYF---QGSTALRPYHDVLSQWQRHYNADRNR-------WHSAWR 51

Query: 333 LTNCSQMEMLYLNTNKFGGVFLRSIANL-SAKITVIGMGDNQISGTIPSEIKNLVNINAF 391
             N +  ++               + +        + +    +    P +   L ++   
Sbjct: 52  QANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109

Query: 392 GVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP 451
            ++   L   +P  + +   L+ L L RN LR  +P ++ +L  L  L +        +P
Sbjct: 110 TIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167

Query: 452 SSLGNCQNLMTLSRL-----LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTL 506
             L +         L     L L    +  S+P  + NL+NL    +  +  S  +   +
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 507 SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLS 566
                LE L L+G +   + P        +K L L   +    +P  +  L  L  L+L 
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 567 YNHFEGEVP 575
                  +P
Sbjct: 286 GCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  132 bits (334), Expect = 2e-34
 Identities = 52/304 (17%), Positives = 104/304 (34%), Gaps = 28/304 (9%)

Query: 274 SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333
                 S        D  + H + +        +N      +   L   +   L+  T  
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWR----QANSNNPQIETRTGRAL-KATADLLEDATQP 81

Query: 334 TNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGV 393
                   L L +      F      LS  +  + +    +   +P  ++    +    +
Sbjct: 82  ----GRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 394 EYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTL---------LNRLFLGFN 444
             N L   +P +I  L  L+ L++        +P+ L +            L  L L + 
Sbjct: 135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 445 NLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPV 504
            ++ ++P+S+ N QNL    + L +  + L  ++   + +L  L E DL         P 
Sbjct: 194 GIR-SLPASIANLQNL----KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 505 TLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLN 564
                  L+ L L+  S   +LPL +  L  +++LDL       ++P  +  L     + 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 565 LSYN 568
           +  +
Sbjct: 308 VPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  124 bits (314), Expect = 1e-31
 Identities = 52/360 (14%), Positives = 115/360 (31%), Gaps = 40/360 (11%)

Query: 175 IGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNIS 234
           +G       + S  E +    +       D L Q +         +           N +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA----DRNRWHSAWRQANSN 56

Query: 235 SLEIISLHSNRFEGSLPLNIGF-NIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKN 293
           + +I +      + +    +     P    L +         P      S+LQ + +   
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 294 HFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVF 353
               ++     + + L  L L++N L     S       + + +++  L +         
Sbjct: 115 GLM-ELPDTMQQFAGLETLTLARNPLRALPAS-------IASLNRLRELSIRACPELTEL 166

Query: 354 LRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQ 413
              +A+                     E + LVN+ +  +E+  +  ++P +I  L+NL+
Sbjct: 167 PEPLASTD----------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209

Query: 414 GLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL 473
            L +  + L   +   + +L  L  L L       N P   G    L    + L L    
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL----KRLILKDCS 264

Query: 474 LGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSG---SLPLSL 530
              ++PL++  L  L + DL      + +P  ++       + +  +  +      P++ 
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (266), Expect = 3e-25
 Identities = 50/301 (16%), Positives = 94/301 (31%), Gaps = 55/301 (18%)

Query: 155 LIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNY 214
           L++         +++    L  +FPD     S L+ + I A  L   +PD++ Q   L  
Sbjct: 74  LLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLET 131

Query: 215 LSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS 274
           L+++ N     LP SI +++ L  +S+ +      LP  +                 +  
Sbjct: 132 LTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLA----------------STD 174

Query: 275 LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLT 334
                    NLQ L +        +      L NL  L +  + L     +       + 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA-------IH 226

Query: 335 NCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGV- 393
           +  ++E L L                         G   +    P        +    + 
Sbjct: 227 HLPKLEELDLR------------------------GCTALR-NYPPIFGGRAPLKRLILK 261

Query: 394 EYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSS 453
           + + L  T+P  I  L  L+ L L        +P  +  L     + +   +LQ  +   
Sbjct: 262 DCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQH 319

Query: 454 L 454
            
Sbjct: 320 R 320

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (358), Expect = 2e-35
 Identities = 91/472 (19%), Positives = 168/472 (35%), Gaps = 46/472 (9%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRI--PDSLCQLRSLNYLSI 217
           NL  L ++D+G +++    PD       L  + +    L   +        L++L  L +
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 218 SENNFSC-KLPLSIWNISSLEIISLHSNRFEGSLPLNI-GFNIPNVNFLSVGQNNFTGSL 275
           S+N      L  S   ++SL+ I   SN+        +       ++F S+  N+    +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 276 PHSFSNASN------LQVLDVYKNHFSGQVKIDFNR------------LSNLSRLFLSKN 317
              +    N      L++LDV  N ++  +  +F+               ++       +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT 377
           N+     +    L      S +  L L+      +  R    L   + V+ +  N+I+  
Sbjct: 251 NIKDPDQNTFAGLAR----SSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKI 305

Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN 437
                  L N+    + YN L          L  +  + L +N +      T   L  L 
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 438 RLFLGFNNLQ-----GNVPSSLGNCQNLMTLSRL------LDLSGNLLGG-SIPLEVGNL 485
            L L  N L       ++P    +   L+TL ++      + LS N L    I   +  +
Sbjct: 366 TLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV 425

Query: 486 RNLAEFDLSENHFSN-EIPVTLSACTTLEYLHLQGNSFSGSLPLSL-----KTLKSIKEL 539
            +L    L++N FS+     T S   +LE L L  N    +    L     + L  ++ L
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 540 DLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGN 591
            L+ N L+   P    +L  L  L+L+ N     +    +  N   + +  N
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  128 bits (323), Expect = 5e-31
 Identities = 66/367 (17%), Positives = 132/367 (35%), Gaps = 18/367 (4%)

Query: 209 LRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQ 268
           L +   L +S N        S   +  L+++ L S     ++      N+PN+  L +G 
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 269 NNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID--FNRLSNLSRLFLSKNNLGTESTSD 326
           +      P +F    +L  L +Y    S  V  D  F  L  L+RL LSKN +       
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI-----RS 137

Query: 327 LDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAK-ITVIGMGDNQISGTIPSEIKNL 385
           L         + ++ +  ++N+   V    +  L  K ++   +  N +   +  +    
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 386 VN-INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFN 444
           +N      +E   ++G           +       N++  +   +L     +     GF+
Sbjct: 198 MNPFRNMVLEILDVSGN-------GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 445 NLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPV 504
           N++    ++        ++ R LDLS   +          L++L   +L+ N  +     
Sbjct: 251 NIKDPDQNTFAGLARS-SV-RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308

Query: 505 TLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLN 564
                  L+ L+L  N        +   L  +  +DL +N+++    +  + L  L  L+
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368

Query: 565 LSYNHFE 571
           L  N   
Sbjct: 369 LRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  108 bits (272), Expect = 8e-25
 Identities = 59/319 (18%), Positives = 108/319 (33%), Gaps = 27/319 (8%)

Query: 274 SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333
           +L       +  + L +  N+        F  L  L  L L           +       
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE-----AF 69

Query: 334 TNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTI--PSEIKNLVNINAF 391
            N   + +L L ++K   +   +   L   +  + +    +S  +      +NL  +   
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 392 GVEYNQLTGTIPH-AIGELKNLQGLALVRNSLRGTIPDTLGNLTL--LNRLFLGFNNLQG 448
            +  NQ+     H + G+L +L+ +    N +       L  L    L+   L  N+L  
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 449 NVPSSLGNCQNLMTLSRL--LDLSGN------------LLGGSIPLEVGNLRNLAEFDLS 494
            V    G C N      L  LD+SGN             +  S    +    ++      
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 495 ENHFSNEIPVTLS--ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPK 552
            ++  +    T +  A +++ +L L             +TLK +K L+L+ N ++    +
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308

Query: 553 YLENLLFLAYLNLSYNHFE 571
               L  L  LNLSYN   
Sbjct: 309 AFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (255), Expect = 1e-22
 Identities = 68/427 (15%), Positives = 138/427 (32%), Gaps = 49/427 (11%)

Query: 144 SNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
               ++  +      L    +  +D+    +             L+ ++++ N +     
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307

Query: 204 DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNF 263
           ++   L +L  L++S N        + + +  +  I L  N     +       +  +  
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQT 366

Query: 264 LSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTES 323
           L +  N  T     +     ++  + +  N      KI+       + + LS+N L    
Sbjct: 367 LDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRL---- 413

Query: 324 TSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIK 383
             +LD L  L     +++L LN N+F         + +  +  + +G+N +     +E+ 
Sbjct: 414 -ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 384 NLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGF 443
                                    L +LQ L L  N L    P    +LT L  L L  
Sbjct: 473 -------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 444 NNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIP 503
           N L     + L +      L  +LD+S N L            +L+  D++ N F  E  
Sbjct: 514 NRL-----TVLSHNDLPANL-EILDISRNQLLA---PNPDVFVSLSVLDITHNKFICECE 564

Query: 504 ----VTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559
               +     T +       + +    P S     S+  L     +    +     +L  
Sbjct: 565 LSTFINWLNHTNVTIAGPPADIYCVY-PDSFS-GVSLFSLSTEGCDEEEVLKSLKFSLFI 622

Query: 560 LAYLNLS 566
           +  + L+
Sbjct: 623 VCTVTLT 629

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 5/120 (4%)

Query: 464 SRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFS 523
            R+       L   +P     L       LS N+       +      L+ L L      
Sbjct: 6   GRIAFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 524 GSL-PLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
            ++   + + L +++ LDL  + +    P   + L  L  L L +      V + G F N
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (345), Expect = 2e-34
 Identities = 69/427 (16%), Positives = 152/427 (35%), Gaps = 25/427 (5%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
               L+++ +  +++     D   +  +LE +D+S N L          L SL YL++  
Sbjct: 48  ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 220 NNFSC-KLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
           N +    +     N+++L+ + + +      +       + ++N L +   +       S
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 279 FSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQ 338
             +  ++  L ++ +  +  ++I  + LS++  L L   NL     S L    + +   +
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 339 MEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIK-----------NLVN 387
           +              L  +     +++ +   D  ++G                    V 
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
           I    +    L   +      L+ ++ + +  + +         +L  L  L L  N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 448 GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG---NLRNLAEFDLSENHFSNEIPV 504
                +        +L + L LS N L  S+         L+NL   D+S N F   +P 
Sbjct: 348 EEYLKNSACKGAWPSL-QTLVLSQNHL-RSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404

Query: 505 TLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLN 564
           +      + +L+L        +   +   ++++ LD+S NNL      +L  L     L 
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQ---ELY 457

Query: 565 LSYNHFE 571
           +S N  +
Sbjct: 458 ISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (340), Expect = 1e-33
 Identities = 75/427 (17%), Positives = 159/427 (37%), Gaps = 29/427 (6%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
           ++ +D+  N++       +   + L+ + + ++ +     D+   L SL +L +S+N+ S
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 224 CKLPLSIWNISSLEIISLHSNRFEGSLPLNIGF-NIPNVNFLSVGQNNFTGSLP-HSFSN 281
                    +SSL+ ++L  N ++ +L +   F N+ N+  L +G       +    F+ 
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 282 ASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEM 341
            ++L  L++               + ++  L L  +          D L+ +    ++  
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR-YLELRD 205

Query: 342 LYLNTNKFG----GVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ 397
             L   +F           +  L+ + +V+          +   I  L  +       N 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 398 LTGTIPHAIG--------ELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN 449
           L    P            E   ++ L + +  L   +      L  + R+ +  + +   
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324

Query: 450 VPSSLGNCQNLMTLSRLLDLSGNLLGGSI---PLEVGNLRNLAEFDLSENHFSN--EIPV 504
           VP S    Q+L +L   LDLS NL+           G   +L    LS+NH  +  +   
Sbjct: 325 VPCSF--SQHLKSL-EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 505 TLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLN 564
            L     L  L +  N+F   +P S +  + ++ L+LS   +   +   +     L  L+
Sbjct: 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLD 437

Query: 565 LSYNHFE 571
           +S N+ +
Sbjct: 438 VSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (303), Expect = 5e-29
 Identities = 60/406 (14%), Positives = 134/406 (33%), Gaps = 30/406 (7%)

Query: 186 SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNR 245
            A    D  +      IP  L    ++  L +S N  +      +   ++L+++ L S+R
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 246 FEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG-QVKIDFN 304
              ++  +  +++ ++  L +  N+ +      F   S+L+ L++  N +    V   F 
Sbjct: 62  IN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 305 RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKI 364
            L+NL  L +            +DF  L    + +  L +          +S+ ++   I
Sbjct: 121 NLTNLQTLRIGNVET-FSEIRRIDFAGL----TSLNELEIKALSLRNYQSQSLKSIR-DI 174

Query: 365 TVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG 424
             + +  ++ +  +      L ++    +    L       +   +    +  +      
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 425 TIPDTLGNLTLLNRL-------------FLGFNNLQGNVPSSLGNCQNLMTLS-RLLDLS 470
              ++   L  L R                G  +   +    +     + T++ R L + 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 471 GNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSL---P 527
              L   +      L  +    +  +              +LE+L L  N          
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 528 LSLKTLKSIKELDLSRNNLS--GQIPKYLENLLFLAYLNLSYNHFE 571
                  S++ L LS+N+L    +  + L  L  L  L++S N F 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (286), Expect = 8e-27
 Identities = 60/362 (16%), Positives = 120/362 (33%), Gaps = 25/362 (6%)

Query: 234 SSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKN 293
            +  +    S  F  S+P  +      +  L +  N  T          +NLQVL +  +
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 294 HFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVF 353
             +      F  L +L  L LS N+L + S+S    L+ L        L L  N +  + 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK------YLNLMGNPYQTLG 114

Query: 354 LRSIANLSAKITVIGMGDNQISGTIPSE-IKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           + S+      +  + +G+ +    I       L ++N   ++   L      ++  ++++
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
             L L  +     +      L+ +  L L   NL     S L   +    + +L      
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 473 LLGGSI--------------PLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQ 518
           L   S                +E  +       D + +       +      T+  LH+ 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 519 GNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKG 578
                  L      L+ +K + +  + +      + ++L  L +L+LS N    E  +  
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 579 VF 580
             
Sbjct: 355 AC 356

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (286), Expect = 9e-27
 Identities = 65/413 (15%), Positives = 142/413 (34%), Gaps = 50/413 (12%)

Query: 160 NLLKLEMIDVGDNQLIGKFP-DFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSIS 218
           NL  L+ + +G+ +   +      A  ++L  ++I A  L      SL  +R +++L++ 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 219 ENNFSCKLPLSIWNISSLEIISLHSNRFEG--SLPLNIGFNIPNVNFLSVGQNNFT---- 272
            +  +  L +    +SS+  + L           PL +      +  L+   +  T    
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 273 GSLPHSFSNASNLQVLDVYKNHFSGQVKIDFN-----------RLSNLSRLFLSKNNLGT 321
             L         L  ++      +G    + +               + RL + +  L  
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTI--- 378
           + ++      + +   +++ + +  +K   V      +L   +  + + +N +       
Sbjct: 301 DLST------VYSLLEKVKRITVENSKVFLVPCSFSQHLK-SLEFLDLSENLMVEEYLKN 353

Query: 379 PSEIKNLVNINAFGVEYNQLT--GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLL 436
            +      ++    +  N L         +  LKNL  L + RN+    +PD+      +
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412

Query: 437 NRLFLGFNNLQ---GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL 493
             L L    ++     +P +L           +LD+S N L  S  L +  L+ L    +
Sbjct: 413 RFLNLSSTGIRVVKTCIPQTL----------EVLDVSNNNLD-SFSLFLPRLQEL---YI 458

Query: 494 SENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546
           S N     +P   S    L  + +  N            L S++++ L  N  
Sbjct: 459 SRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 48/259 (18%), Positives = 90/259 (34%), Gaps = 16/259 (6%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
             SI + L+A +  + +  N+I+     +++   N+    ++ +++      A   L +L
Sbjct: 17  FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL--LDLS 470
           + L L  N L        G L+ L  L L  N        +LG       L+ L  L + 
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-----QTLGVTSLFPNLTNLQTLRIG 131

Query: 471 GNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLS 529
                  I       L +L E ++      N    +L +   + +L L  +  +  L + 
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

Query: 530 LKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLI 589
              L S++ L+L   NL+      L      + +            R  V  + +   L+
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF-------RGSVLTDESFNELL 244

Query: 590 GNERLCGGLEELHLPSCHF 608
              R    L E+    C  
Sbjct: 245 KLLRYILELSEVEFDDCTL 263

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 45/276 (16%), Positives = 99/276 (35%), Gaps = 30/276 (10%)

Query: 208 QLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVG 267
           +  ++  L I +      L      +  ++ I++ +++    +P +   ++ ++ FL + 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342

Query: 268 QNNFTGSLPHS---FSNASNLQVLDVYKNHFS--GQVKIDFNRLSNLSRLFLSKNNLGTE 322
           +N        +        +LQ L + +NH     +       L NL+ L +S+N     
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HP 401

Query: 323 STSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI 382
                 +   +        L L++     V       +   + V+ + +N +  +    +
Sbjct: 402 MPDSCQWPEKMRF------LNLSSTGIRVVK----TCIPQTLEVLDVSNNNLD-SFSLFL 450

Query: 383 KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442
             L  +    +  N+L  T+P        L  + + RN L+         LT L +++L 
Sbjct: 451 PRLQELY---ISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

Query: 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSI 478
            N           +C  +  LSR L+ +     GS 
Sbjct: 506 TNPWD-------CSCPRIDYLSRWLNKNSQKEQGSA 534

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 467 LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSL 526
            D        SIP  +     +   DLS N  +      L AC  L+ L L+ +  +   
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 527 PLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
             +  +L S++ LDLS N+LS     +   L  L YLNL  N ++  +    +F N
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPN 121

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  136 bits (344), Expect = 3e-34
 Identities = 71/440 (16%), Positives = 147/440 (33%), Gaps = 36/440 (8%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLG-GRIPDSLCQLRSLNYLSIS 218
            L  L+ +   +  L       I +   L+ ++++ N++   ++P+    L +L +L +S
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 219 ENNFSCKLPLSIWNISSLEI----ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS 274
            N         +  +  + +    + L  N     +     F    ++ L++  N  + +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA-FKEIRLHKLTLRNNFDSLN 215

Query: 275 LPH-SFSNASNLQVLDVYKNHFSGQVKI---DFNRLSNLSRLFLSKNNLGTESTSDLDFL 330
           +        + L+V  +    F  +  +   D + L  L  L + +  L        D +
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 331 TLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLV---- 386
            L    + +    L +     V   S       + ++     Q        +K L     
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 387 ---NINAFG---------VEYNQLT--GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGN 432
              N  +           +  N L+  G    +     +L+ L L  N +  T+      
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 394

Query: 433 LTLLNRLFLGFNNLQGNVPSS-LGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEF 491
           L  L  L    +NL+     S   + +NL+ L    D+S      +       L +L   
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL----DISHTHTRVAFNGIFNGLSSLEVL 450

Query: 492 DLSENHFSNEI-PVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQI 550
            ++ N F     P   +    L +L L         P +  +L S++ L+++ N L    
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 551 PKYLENLLFLAYLNLSYNHF 570
               + L  L  + L  N +
Sbjct: 511 DGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  132 bits (334), Expect = 6e-33
 Identities = 87/449 (19%), Positives = 145/449 (32%), Gaps = 40/449 (8%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
            + +D+  N L         +F  L+ +D+S   +      +   L  L+ L ++ N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 224 CKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFT-GSLPHSFSNA 282
                +   +SSL+ +         SL      ++  +  L+V  N      LP  FSN 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 283 SNLQVLDVYKNHFSGQVKIDFNRLSNLS----RLFLSKNNLGTESTSDLDFLTLLTNCSQ 338
           +NL+ LD+  N        D   L  +      L LS N +          + L      
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK---- 204

Query: 339 MEMLYLNTNKFGG----VFLRSIANLSAKITVIG--MGDNQISGTIPSEIKNLVNINAFG 392
              L L  N          ++ +A L     V+G    +  +     S ++ L N+    
Sbjct: 205 ---LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 393 VEYNQLTG---TIPHAIGELKNLQGLALVRNSLRGTIPDT-LGNLTLLNRLFLGFNNLQG 448
                L      I      L N+   +LV  ++      +       L  +   F     
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 449 NVPSSL----------GNCQNLMTLSRL--LDLSGNLLG--GSIPLEVGNLRNLAEFDLS 494
               SL          GN  + + L  L  LDLS N L   G          +L   DLS
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 495 ENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLS-LKTLKSIKELDLSRNNLSGQIPKY 553
            N     +         LE+L  Q ++       S   +L+++  LD+S  +        
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 554 LENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
              L  L  L ++ N F+       +F  
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLP-DIFTE 468

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (327), Expect = 6e-32
 Identities = 71/419 (16%), Positives = 150/419 (35%), Gaps = 40/419 (9%)

Query: 160 NLLKLEMIDVGDNQL-IGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSIS 218
           +L  L+ ++V  N +   K P++ +N + LE +D+S+N +       L  L  +  L++S
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 219 ---ENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLS------VGQN 269
                N    +    +    L  ++L +N    ++       +  +            + 
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 270 NFTGSLPHSFSNASNLQVLDVYKNH---FSGQVKIDFNRLSNLSRLFLSKNNLGT----E 322
           N       +     NL + +    +   +   +   FN L+N+S   L    +       
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 323 STSDLDFLTLLTNC---------SQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQ 373
                  L L+              ++ L   +NK G  F  S  +L   +  + +  N 
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLP-SLEFLDLSRNG 358

Query: 374 IS--GTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTL 430
           +S  G          ++    + +N +  T+      L+ L+ L    ++L+        
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 431 GNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLA 489
            +L  L  L +   + +           +L     +L ++GN    +   ++   LRNL 
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSL----EVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 490 EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLS-LKTLKSIKELDLSRNNLS 547
             DLS+       P   ++ ++L+ L++  N    S+P      L S++++ L  N   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (313), Expect = 3e-30
 Identities = 79/425 (18%), Positives = 140/425 (32%), Gaps = 28/425 (6%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           +L  L  + +  N +        +  S+L+ +      L       +  L++L  L+++ 
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 220 NNF-SCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVG---QNNFTGSL 275
           N   S KLP    N+++LE + L SN+ + S+       +  +  L++      N    +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 276 PHSFSNASNLQVLDVYKNHFSGQV-KIDFNRLSNLSRLFLSKN---NLGTESTSDLDFLT 331
                    L  L +  N  S  V K     L+ L    L      N G     D   L 
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 332 LLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIP-SEIKNLVNINA 390
            L N   +E   L    +    +  + N    ++   +    I      S      ++  
Sbjct: 253 GLCN-LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 391 FGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ--G 448
              ++ Q          +LK+L+ L    N       +   +L  L  L L  N L   G
Sbjct: 312 VNCKFGQFPT------LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKG 363

Query: 449 NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPV-TLS 507
               S     +L    + LDLS N +  ++      L  L   D   ++           
Sbjct: 364 CCSQSDFGTTSL----KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 508 ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY-LENLLFLAYLNLS 566
           +   L YL +       +       L S++ L ++ N+            L  L +L+LS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 567 YNHFE 571
               E
Sbjct: 479 QCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  121 bits (306), Expect = 2e-29
 Identities = 75/411 (18%), Positives = 144/411 (35%), Gaps = 43/411 (10%)

Query: 202 IPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNV 261
           IPD+L    S   L +S N        S ++   L+++ L     + ++      ++ ++
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 262 NFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT 321
           + L +  N        +FS  S+LQ L   + + +         L  L  L ++ N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-- 136

Query: 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVF---LRSIANLSAKITVIGMGDNQISGTI 378
                       +N + +E L L++NK   ++   LR +  +      + +  N ++  I
Sbjct: 137 ---QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 379 PSEIKNLVNINAFGVEYNQLTGTIPH-AIGELKNLQGLALVRNSLRGTI------PDTLG 431
                  + ++   +  N  +  +    I  L  L+   LV    R            L 
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 432 NLTLLNRLFLGFNNLQG---NVPSSLGNCQNL-------MTLSRLLDLSGNLLGGSI--- 478
            L  L         L     ++        N+       +T+ R+ D S N     +   
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 479 -----PLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGN--SFSGSLPLSLK 531
                      L++L     + N   N    +     +LE+L L  N  SF G    S  
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 532 TLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
              S+K LDLS N +   +      L  L +L+  +++ + ++    VF +
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLS 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (281), Expect = 4e-26
 Identities = 66/397 (16%), Positives = 128/397 (32%), Gaps = 35/397 (8%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEA----IDISANMLGGRIPDSLCQLRSLNYL 215
           NL  LE +D+  N++   +   +     +      +D+S N +   I     +   L+ L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKL 205

Query: 216 SISENNFSCKLP-LSIWNISSLEIISLHSNRFEG-----SLPLNIGFNIPNVNFLS---V 266
           ++  N  S  +    I  ++ LE+  L    F           +    + N+        
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 267 GQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNR-LSNLSRLFLSKNNLGTESTS 325
             + +   +   F+  +N+    +            +N    +L  +        T    
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 326 DLDFLTLLTN----------CSQMEMLYLNTNKFGGVFLRSIANLS-AKITVIGMGDNQI 374
            L  LT  +N             +E L L+ N        S ++     +  + +  N +
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 375 SGTIPSEIKNLVNINAFGVEYNQLTGTIPH-AIGELKNLQGLALVRNSLRGTIPDTLGNL 433
             T+ S    L  +     +++ L           L+NL  L +     R         L
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 434 TLLNRLFLGFNNLQGNVPS-SLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEF 491
           + L  L +  N+ Q N         +NL      LDLS   L   +      +L +L   
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNL----TFLDLSQCQLE-QLSPTAFNSLSSLQVL 499

Query: 492 DLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPL 528
           +++ N   +         T+L+ + L  N +  S P 
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 42/226 (18%), Positives = 73/226 (32%), Gaps = 12/226 (5%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
              I  NL      + +  N +         +   +    +   ++      A   L +L
Sbjct: 19  FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
             L L  N ++         L+ L +L     NL       +G+ + L    + L+++ N
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL----KELNVAHN 134

Query: 473 LLG-GSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEY----LHLQGNSFSGSLP 527
           L+    +P    NL NL   DLS N   +     L     +      L L  N  +  + 
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQ 193

Query: 528 LSLKTLKSIKELDLSRNNLSGQIPK-YLENLLFLAYLNLSYNHFEG 572
                   + +L L  N  S  + K  ++ L  L    L    F  
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 61/342 (17%), Positives = 119/342 (34%), Gaps = 28/342 (8%)

Query: 142 HQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIG-KFPDFIANFSALEAIDISANMLGG 200
            ++   LE  +   ++ L  L +E   +           D     + + +  + +  +  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 201 RIPDS-LCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIP 259
               S     + L  ++     F          + SL+ ++  SN+   +       ++P
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAFS---EVDLP 347

Query: 260 NVNFLSVGQNNFT--GSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN 317
           ++ FL + +N  +  G    S    ++L+ LD+  N     +  +F  L  L  L    +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 406

Query: 318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT 377
           NL       +   ++  +   +  L ++       F      LS  + V+ M  N     
Sbjct: 407 NL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQEN 460

Query: 378 IPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLL 436
              +I   L N+    +   QL    P A   L +LQ L +  N L+         LT L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 437 NRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSI 478
            +++L  N           +C  +  LSR L+ +     GS 
Sbjct: 521 QKIWLHTNPWD-------CSCPRIDYLSRWLNKNSQKEQGSA 555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  127 bits (321), Expect = 1e-31
 Identities = 50/398 (12%), Positives = 110/398 (27%), Gaps = 30/398 (7%)

Query: 178 FPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE 237
             +   N +  +   ++ + L   +        ++  L +S N  S      +   + LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG 297
           +++L SN    +L L    ++  +  L +  N              +++ L    N+ S 
Sbjct: 62  LLNLSSNVLYETLDLE---SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 298 QVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI 357
             ++  +R      ++L+ N +      D    + +        L L  N+   V    +
Sbjct: 113 --RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY------LDLKLNEIDTVNFAEL 164

Query: 358 ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLAL 417
           A  S  +  + +  N I   +  ++     +    +  N+L   +         +  ++L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 418 VRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS 477
             N L   I   L     L    L  N                    R+  ++   +   
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-----FSKNQRVQTVAKQTVKKL 275

Query: 478 IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGS----LPLSLKTL 533
                                 +           L+       S  GS    L    +  
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQ 335

Query: 534 KSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
              +E+D  +      I +          L       +
Sbjct: 336 ARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (318), Expect = 4e-31
 Identities = 61/421 (14%), Positives = 125/421 (29%), Gaps = 41/421 (9%)

Query: 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSIS 218
            N  + ++  V D+ L         +   ++ +D+S N L       L     L  L++S
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 219 ENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
            N    +    + ++S+L  + L++N  +  L        P++  L    NN +      
Sbjct: 67  SNVLY-ETL-DLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCSR 118

Query: 279 FSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQ 338
                  + + +  N  +    +D    S +  L L  N +       ++F  L  +   
Sbjct: 119 G---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-----DTVNFAELAASSDT 170

Query: 339 MEMLYLNTNKF----GGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE 394
           +E L L  N      G V    +  L        +  N+++  +  E ++   +    + 
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLD-------LSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 395 YNQLTGTIPHAIGELKNLQGLALVRNSLR-GTIPDTLGNLTLLNRLFL-GFNNLQGNVPS 452
            N+L   I  A+   +NL+   L  N    GT+ D       +  +       L G    
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 453 SLGNCQNL-MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTT 511
                           DL        I L+      L       +     +         
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL---SGQGSETE-RLECERENQAR 337

Query: 512 LEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
              +      +   +       ++   L+  +  L         +    A+  L     +
Sbjct: 338 QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD-----EQVSNGRRAHAELDGTLQQ 392

Query: 572 G 572
            
Sbjct: 393 A 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 7e-28
 Identities = 47/298 (15%), Positives = 101/298 (33%), Gaps = 27/298 (9%)

Query: 274 SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333
           ++     N +  ++  V  +     +        N+  L LS N L   S +DL   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 334 TNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGV 393
                 E+L L++N         + +LS  +  + + +N +      E+    +I     
Sbjct: 61  ------ELLNLSSNVLYE--TLDLESLS-TLRTLDLNNNYV-----QELLVGPSIETLHA 106

Query: 394 EYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG-NVPS 452
             N ++  +       +  + + L  N +        G  + +  L L  N +   N   
Sbjct: 107 ANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 453 SLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTL 512
              +   L      L+L  N +   +  +V     L   DLS N  +  +     +   +
Sbjct: 164 LAASSDTL----EHLNLQYNFI-YDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 513 EYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS-GQIPKYLENLLFLAYLNLSYNH 569
            ++ L+ N     +  +L+  ++++  DL  N    G +  +      +  +      
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 43/352 (12%), Positives = 105/352 (29%), Gaps = 11/352 (3%)

Query: 152 NLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGG-RIPDSLCQLR 210
           N+  +        + I + +N++           S ++ +D+  N +      +      
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 211 SLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNN 270
           +L +L++  N     +   +   + L+ + L SN+    +      +   V ++S+  N 
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNK 225

Query: 271 FTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFL 330
               +  +   + NL+  D+  N F      DF    N     ++K  +   +  + +  
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 331 TLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINA 390
           T+ T                  F   +  L  K   +  G    +  +  E +N      
Sbjct: 284 TVPT---LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 391 FGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNV 450
                 Q    I       +    L   + +L   + +       L+            +
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-EL 399

Query: 451 PSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEI 502
             +      L  L  ++     +      ++   +R+   +   E   + E 
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEEN 451

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 477 SIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSI 536
           +I     N        ++++     +     +   ++ L L GN  S      L     +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 537 KELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
           + L+LS N L   +   LE+L  L  L+L+ N+ +
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (315), Expect = 2e-31
 Identities = 74/339 (21%), Positives = 128/339 (37%), Gaps = 30/339 (8%)

Query: 209 LRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQ 268
           L +   ++   +         + +   +E+++L+  + E  +          +  L +G 
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 102

Query: 269 NNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLD 328
           N      PH F N   L VL + +N  S   +  F+    L+ L +S NNL       ++
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-----ERIE 157

Query: 329 FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNI 388
             T     + ++ L L++N+   V L  I +L        +  N +S      +   + +
Sbjct: 158 DDTF-QATTSLQNLQLSSNRLTHVDLSLIPSL----FHANVSYNLLS-----TLAIPIAV 207

Query: 389 NAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG 448
                 +N +   +   +     L  L L  N+L  T    L N   L  + L +N L+ 
Sbjct: 208 EELDASHNSIN-VVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEK 262

Query: 449 NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSA 508
            +       Q L      L +S N L  ++ L    +  L   DLS NH    +      
Sbjct: 263 IMYHPFVKMQRL----ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316

Query: 509 CTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547
              LE L+L  NS   +L LS  T  ++K L LS N+  
Sbjct: 317 FDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (266), Expect = 6e-25
 Identities = 52/331 (15%), Positives = 106/331 (32%), Gaps = 28/331 (8%)

Query: 242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKI 301
                   +  N+ ++    + + +                +N +++    +        
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYD-VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 63

Query: 302 DFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLS 361
             +    +  L L+   +    T    +   +      + LY+  N    +      N+ 
Sbjct: 64  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI------QKLYMGFNAIRYLPPHVFQNVP 117

Query: 362 AKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRN 420
             +TV+ +  N +S ++P  I  N   +    +  N L            +LQ L L  N
Sbjct: 118 -LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175

Query: 421 SLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL 480
            L   +   L  +  L    + +N L     S+L     +      LD S N +     +
Sbjct: 176 RLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAV----EELDASHNSINV---V 220

Query: 481 EVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELD 540
                  L    L  N+ + +    L     L  + L  N     +      ++ ++ L 
Sbjct: 221 RGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 541 LSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
           +S N L   +  Y + +  L  L+LS+NH  
Sbjct: 279 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 48/241 (19%), Positives = 81/241 (33%), Gaps = 23/241 (9%)

Query: 371 DNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTL 430
                     E   L N      + + +       +   + ++ L L    +        
Sbjct: 30  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF 89

Query: 431 GNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLA 489
                + +L++GFN ++   P    N   L     +L L  N L  S+P  +  N   L 
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLL----TVLVLERNDL-SSLPRGIFHNTPKLT 144

Query: 490 EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQ 549
              +S N+       T  A T+L+ L L  N  +    + L  + S+   ++S N LS  
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-- 199

Query: 550 IPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNE-------RLCGGLEELH 602
               L   + +  L+ S+N     V    V    T + L  N            GL E+ 
Sbjct: 200 ---TLAIPIAVEELDASHNSIN-VVR-GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVD 254

Query: 603 L 603
           L
Sbjct: 255 L 255

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 49/290 (16%), Positives = 99/290 (34%), Gaps = 50/290 (17%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           N+  L ++ +  N L                  +   +              L  LS+S 
Sbjct: 115 NVPLLTVLVLERNDL----------------SSLPRGIFHN--------TPKLTTLSMSN 150

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           NN       +    +SL+ + L SNR    + L+    IP++   +V  N  +     + 
Sbjct: 151 NNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHANVSYNLLS-----TL 201

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
           +    ++ LD   N  +    +       L+ L L  NNL   +         L N   +
Sbjct: 202 AIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTDTAW--------LLNYPGL 250

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
             + L+ N+   +       +  ++  + + +N++   +    + +  +    + +N L 
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN 449
             +     +   L+ L L  NS+  T+   L     L  L L  N+   N
Sbjct: 309 -HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 4/140 (2%)

Query: 445 NLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP--LEVGNLRNLAEFDLSENHFSNEI 502
           N++   P       NL       D+  ++    +    E   L N        +      
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61

Query: 503 PVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAY 562
              L +   +E L+L           +     +I++L +  N +    P   +N+  L  
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121

Query: 563 LNLSYNHFEGEVPRKGVFGN 582
           L L  N     +PR G+F N
Sbjct: 122 LVLERNDLS-SLPR-GIFHN 139

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (304), Expect = 2e-30
 Identities = 44/298 (14%), Positives = 101/298 (33%), Gaps = 27/298 (9%)

Query: 274 SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333
           ++     N +  ++  V  +     +        N+  L LS N L   S +       L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DL 54

Query: 334 TNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGV 393
              +++E+L L++N         + +LS  +  + + +N +      E+    +I     
Sbjct: 55  APFTKLELLNLSSNVLYE--TLDLESLS-TLRTLDLNNNYV-----QELLVGPSIETLHA 106

Query: 394 EYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG-NVPS 452
             N ++  +       +  + + L  N +        G  + +  L L  N +   N   
Sbjct: 107 ANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 453 SLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTL 512
              +   L      L+L  N +   +  +V     L   DLS N  +  +     +   +
Sbjct: 164 LAASSDTL----EHLNLQYNFI-YDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 513 EYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS-GQIPKYLENLLFLAYLNLSYNH 569
            ++ L+ N     +  +L+  ++++  DL  N    G +  +      +  +      
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (272), Expect = 3e-26
 Identities = 56/345 (16%), Positives = 108/345 (31%), Gaps = 39/345 (11%)

Query: 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSIS 218
            N  + ++  V D+ L         +   ++ +D+S N L       L     L  L++S
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 219 ENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
            N    +    + ++S+L  + L++N  +  L        P++  L    NN +  +   
Sbjct: 67  SNVLY-ETL-DLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNIS-RVS-- 115

Query: 279 FSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQ 338
            S     + + +  N  +    +D    S +  L L  N +       ++F  L  +   
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-----DTVNFAELAASSDT 170

Query: 339 MEMLYLNTNKF----GGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE 394
           +E L L  N      G V    +  L        +  N+++  +  E ++   +    + 
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLD-------LSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 395 YNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL 454
            N+L   I  A+   +NL+   L  N          G L            +       L
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGF------HCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 455 GNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499
                       L   G      +P             L  +H  
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLP----APFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 1e-25
 Identities = 50/372 (13%), Positives = 104/372 (27%), Gaps = 59/372 (15%)

Query: 202 IPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNV 261
           I +            +++++    L     +  +++ + L  N     +           
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QIS---------- 50

Query: 262 NFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT 321
                             +  + L++L++  N       +D   LS L  L L+ N    
Sbjct: 51  --------------AADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY--- 91

Query: 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSE 381
                   +  L     +E L+   N    V              I + +N+I+     +
Sbjct: 92  --------VQELLVGPSIETLHAANNNISRVSCSRGQGK----KNIYLANNKITMLRDLD 139

Query: 382 IKNLVNINAFGVEYNQLTG-TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLF 440
                 +    ++ N++              L+ L L  N +   +   +     L  L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLD 197

Query: 441 LGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS- 499
           L  N L   +     +   +      + L  N L   I   +   +NL  FDL  N F  
Sbjct: 198 LSSNKLA-FMGPEFQSAAGV----TWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 500 NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559
             +    S    ++ +  Q       L    +   ++  L          +P        
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPA----PFA 304

Query: 560 LAYLNLSYNHFE 571
              + L ++H  
Sbjct: 305 DRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 1e-25
 Identities = 53/364 (14%), Positives = 109/364 (29%), Gaps = 50/364 (13%)

Query: 179 PDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI 238
            +   N +  +   ++ + L   +        ++  L +S N  S      +   + LE+
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQ 298
           ++L SN    +L L    ++  +  L +  N              +++ L    N+ S  
Sbjct: 63  LNLSSNVLYETLDLE---SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-- 112

Query: 299 VKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA 358
            ++  +R      ++L+ N +      DLD        S+++ L L  N           
Sbjct: 113 -RVSCSRGQGKKNIYLANNKI--TMLRDLDEGCR----SRVQYLDLKLN----------- 154

Query: 359 NLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALV 418
               +I  +                +   +    ++YN +   +   +     L+ L L 
Sbjct: 155 ----EIDTV---------NFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLS 199

Query: 419 RNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSI 478
            N L   +     +   +  + L  N L   +  +L   QNL       DL GN      
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL----EHFDLRGNGF-HCG 252

Query: 479 PLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKE 538
            L     +N     +++             CT     H                L ++  
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGH 312

Query: 539 LDLS 542
               
Sbjct: 313 HHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 477 SIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSI 536
           +I     N        ++++     +     +   ++ L L GN  S      L     +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 537 KELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
           + L+LS N L   +   LE+L  L  L+L+ N+ +
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (308), Expect = 5e-30
 Identities = 73/379 (19%), Positives = 130/379 (34%), Gaps = 61/379 (16%)

Query: 201 RIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFN--- 257
            +P     ++S      + + +    P        + +  L       +  L +      
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 258 -----IPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRL 312
                 P++  L    N+ T  LP    +  +L V +      S            L  L
Sbjct: 85  SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL-------PPLLEYL 136

Query: 313 FLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDN 372
            +S N L          L  L N S ++++ ++ N      L+ + +L   +  I  G+N
Sbjct: 137 GVSNNQLEK--------LPELQNSSFLKIIDVDNNS-----LKKLPDLPPSLEFIAAGNN 183

Query: 373 QISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGN 432
           Q+      E++NL  + A   + N L   +P       +L+ +    N L       L N
Sbjct: 184 QL--EELPELQNLPFLTAIYADNNSLK-KLP---DLPLSLESIVAGNNIL--EELPELQN 235

Query: 433 LTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFD 492
           L  L  ++   N L+  +P    + +        L++  N L   +P    +L  L   +
Sbjct: 236 LPFLTTIYADNNLLK-TLPDLPPSLEA-------LNVRDNYL-TDLPELPQSLTFLDVSE 286

Query: 493 LSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPK 552
              +  S   P        L YL+   N    SL     +L   +EL++S N L  ++P 
Sbjct: 287 NIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSL---EELNVSNNKLI-ELPA 334

Query: 553 YLENLLFLAYLNLSYNHFE 571
               L     L  S+NH  
Sbjct: 335 LPPRLE---RLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  121 bits (306), Expect = 8e-30
 Identities = 80/445 (17%), Positives = 155/445 (34%), Gaps = 89/445 (20%)

Query: 156 IQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYL 215
           ++     +   +++ +  L    P+   +   LE++  S N L   +P+    L+SL   
Sbjct: 65  LRDCLDRQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVD 119

Query: 216 SISENNFSCKLPL---------------SIWNISSLEIISLHSNRFEGSLPLNIGFNIPN 260
           + +    S   PL                + N S L+II + +N  +  LP       P+
Sbjct: 120 NNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLP----DLPPS 174

Query: 261 VNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLG 320
           + F++ G N     LP    N   L  +    N     +K   +   +L  +    N L 
Sbjct: 175 LEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGNNILE 228

Query: 321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS 380
                    L  L N   +  +Y + N      L+++ +L   +  + + DN ++  +P 
Sbjct: 229 E--------LPELQNLPFLTTIYADNNL-----LKTLPDLPPSLEALNVRDNYLT-DLPE 274

Query: 381 EIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLF 440
             ++L  ++     ++ L+   P       NL  L    N +R ++ D   +L  LN   
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLEELN--- 323

Query: 441 LGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSN 500
           +  N L   +P+     + L         S N L   +P    NL+ L    +  N    
Sbjct: 324 VSNNKLI-ELPALPPRLERL-------IASFNHLA-EVPELPQNLKQL---HVEYNPLR- 370

Query: 501 EIPVTLSACTT----------------LEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN 544
           E P    +                   L+ LH++ N      P   ++++   +L ++  
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVE---DLRMNSE 426

Query: 545 NLSGQIPKYLENLLFLAYLNLSYNH 569
            +        E    L      ++H
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (261), Expect = 5e-24
 Identities = 71/340 (20%), Positives = 123/340 (36%), Gaps = 57/340 (16%)

Query: 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISEN 220
              LE I  G+NQL  + P+   N   L AI    N L  ++PD    L S+       N
Sbjct: 172 PPSLEFIAAGNNQLE-ELPELQ-NLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNN 225

Query: 221 NFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS 280
               +LP  + N+  L  I   +N  + +LP        ++  L+V  N  T  LP    
Sbjct: 226 ILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPP----SLEALNVRDNYLT-DLPELPQ 277

Query: 281 NASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQME 340
           + + L V +   +  S           NL  L  S N + +          L      +E
Sbjct: 278 SLTFLDVSENIFSGLS-------ELPPNLYYLNASSNEIRS----------LCDLPPSLE 320

Query: 341 MLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG 400
            L ++ NK     L  +  L  ++  +    N ++  +P   +NL  ++   VEYN L  
Sbjct: 321 ELNVSNNK-----LIELPALPPRLERLIASFNHLA-EVPELPQNLKQLH---VEYNPLR- 370

Query: 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNL 460
             P     +++L+      NS    +P+   NL  L+   +  N L+   P    + ++L
Sbjct: 371 EFPDIPESVEDLR-----MNSHLAEVPELPQNLKQLH---VETNPLR-EFPDIPESVEDL 421

Query: 461 MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSN 500
                   ++   +             L +     +H  +
Sbjct: 422 -------RMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 6e-29
 Identities = 73/362 (20%), Positives = 137/362 (37%), Gaps = 59/362 (16%)

Query: 218 SENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH 277
           S    +    +     +   ++++  +    +LP  +     ++  L +  NN T SLP 
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA 78

Query: 278 SFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCS 337
                  L+ L+V  N  +  + +    L  LS       +L            L +   
Sbjct: 79  LPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA----------LPSG-- 122

Query: 338 QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ 397
            +  L++  N+     L S+  L   +  + + DNQ++ ++P+    L  + A+    NQ
Sbjct: 123 -LCKLWIFGNQ-----LTSLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYN---NQ 172

Query: 398 LTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNC 457
           LT ++P        LQ L++  N L  ++P     L  L        +L    P+     
Sbjct: 173 LT-SLPMLPS---GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL----PALPSGL 223

Query: 458 QNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHL 517
           + L        +SGN L  S+P+    L+ L    +S N  +  +P+     + L  L +
Sbjct: 224 KEL-------IVSGNRLT-SLPVLPSELKEL---MVSGNRLT-SLPMLP---SGLLSLSV 268

Query: 518 QGNSFSGSLPLSLKTLKSIKELDLSRNNLS---GQIPKYLENLLFLAYLNLSYNHFEGEV 574
             N  +  LP SL  L S   ++L  N LS    Q  + + +    +   + ++      
Sbjct: 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

Query: 575 PR 576
           PR
Sbjct: 328 PR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (303), Expect = 8e-29
 Identities = 68/340 (20%), Positives = 124/340 (36%), Gaps = 59/340 (17%)

Query: 207 CQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSV 266
           C       L++ E+  +  LP  +     +  + +  N    SLP         +  L V
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP----ELRTLEV 88

Query: 267 GQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSD 326
             N  T SLP        L +      H            S L +L++  N L +     
Sbjct: 89  SGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTS----- 135

Query: 327 LDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLV 386
                L      ++ L ++ N+     L S+  L +++  +   +NQ++ ++P     L 
Sbjct: 136 -----LPVLPPGLQELSVSDNQ-----LASLPALPSELCKLWAYNNQLT-SLPMLPSGLQ 184

Query: 387 NINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNL 446
            ++   V  NQL  ++P    EL  L       N L  ++P     L     L +  N L
Sbjct: 185 ELS---VSDNQLA-SLPTLPSELYKLW---AYNNRLT-SLPALPSGLK---ELIVSGNRL 233

Query: 447 QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTL 506
             ++P      + L        +SGN L  S+P+    L +L    +  N  +  +P +L
Sbjct: 234 T-SLPVLPSELKEL-------MVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESL 280

Query: 507 SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546
              ++   ++L+GN  S     +L+ L+ I         +
Sbjct: 281 IHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (294), Expect = 9e-28
 Identities = 74/411 (18%), Positives = 139/411 (33%), Gaps = 61/411 (14%)

Query: 138 EDWMHQSNDKLEAGNLGLIQRLNLL---KLEMIDVGDNQLIGKFPDFIANFSALEAIDIS 194
             W   +  +   G   ++Q++         +++VG++ L    PD +   + +  + I 
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCL--PAHITTLVIP 69

Query: 195 ANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNI 254
            N L   +P    +LR+L    +S N  +  LP+    +  L I S              
Sbjct: 70  DNNLT-SLPALPPELRTLE---VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--- 121

Query: 255 GFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL 314
                 +  L +  N  T SLP        LQ L V  N  +    +     S L +L+ 
Sbjct: 122 -----GLCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQLA---SLP-ALPSELCKLWA 168

Query: 315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQI 374
             N L +          L    S ++ L ++ N+     L S+  L +++  +   +N++
Sbjct: 169 YNNQLTS----------LPMLPSGLQELSVSDNQ-----LASLPTLPSELYKLWAYNNRL 213

Query: 375 SGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLT 434
           + ++P+    L  +    V  N+LT ++P    ELK L    +  N L  ++P     L 
Sbjct: 214 T-SLPALPSGLKELI---VSGNRLT-SLPVLPSELKELM---VSGNRLT-SLPMLPSGLL 264

Query: 435 LLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLS 494
               L +  N L   +P SL +  +       ++L GN L       +  + +   +   
Sbjct: 265 ---SLSVYRNQLT-RLPESLIHLSSE----TTVNLEGNPLSERTLQALREITSAPGYSGP 316

Query: 495 ENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNN 545
              F             L       +    +                  N 
Sbjct: 317 IIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 9e-29
 Identities = 65/314 (20%), Positives = 111/314 (35%), Gaps = 15/314 (4%)

Query: 259 PNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN 318
                L +G+N         F++  +L+ L++ +N  S      FN L NL  L L  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 319 LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTI 378
           L          L+ LT       L ++ NK   +      +L   +  + +GDN +   I
Sbjct: 92  LKLIPLGVFTGLSNLTK------LDISENKIVILLDYMFQDLY-NLKSLEVGDNDLV-YI 143

Query: 379 PSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN 437
                  L ++    +E   LT     A+  L  L  L L   ++      +   L  L 
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 438 RLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSEN 496
            L +        +  +     NL      L ++   L  ++P     +L  L   +LS N
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNL----TSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYN 258

Query: 497 HFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLEN 556
             S      L     L+ + L G   +   P + + L  ++ L++S N L+        +
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

Query: 557 LLFLAYLNLSYNHF 570
           +  L  L L  N  
Sbjct: 319 VGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 1e-26
 Identities = 60/290 (20%), Positives = 114/290 (39%), Gaps = 13/290 (4%)

Query: 283 SNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEML 342
           +  ++LD+ KN      + +F    +L  L L++N +     S ++      N   +  L
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-----SAVEPGAF-NNLFNLRTL 85

Query: 343 YLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGT 401
            L +N+   + L     LS  +T + + +N+I   +   + ++L N+ +  V  N L   
Sbjct: 86  GLRSNRLKLIPLGVFTGLS-NLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYI 143

Query: 402 IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLM 461
              A   L +L+ L L + +L     + L +L  L  L L   N+      S      L 
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL- 202

Query: 462 TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS 521
              ++L++S      ++        NL    ++  + +    + +     L +L+L  N 
Sbjct: 203 ---KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 522 FSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
            S      L  L  ++E+ L    L+   P     L +L  LN+S N   
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 1e-24
 Identities = 69/340 (20%), Positives = 114/340 (33%), Gaps = 38/340 (11%)

Query: 185 FSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN 244
            +    +D+  N +     D       L  L ++EN  S   P +  N+ +L  + L SN
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFN 304
           R +  +PL +   + N+  L + +N     L + F +  NL+ L+V  N         F+
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 305 RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKI 364
            L++L +L L K NL +  T  L  L  L        L L                    
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIV------LRLR------------------- 184

Query: 365 TVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG 424
                    I+       K L  +    + +     T+        NL  L++   +L  
Sbjct: 185 ------HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238

Query: 425 TIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-G 483
                + +L  L  L L +N +     S L     L      + L G  L   +      
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE----IQLVGGQL-AVVEPYAFR 293

Query: 484 NLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFS 523
            L  L   ++S N  +        +   LE L L  N  +
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 10/265 (3%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           NL  L  + +  N+L           S L  +DIS N +   +      L +L  L + +
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N+       +   ++SLE ++L       S+P     ++  +  L +   N      +SF
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
                L+VL++    +   +  +     NL+ L ++  NL       +  L  L      
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR----- 251

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQL 398
             L L+ N    +    +  L  ++  I +   Q++  +     + L  +    V  NQL
Sbjct: 252 -FLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL 308

Query: 399 TGTIPHAIGELKNLQGLALVRNSLR 423
           T         + NL+ L L  N L 
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPLA 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (301), Expect = 1e-28
 Identities = 76/413 (18%), Positives = 135/413 (32%), Gaps = 79/413 (19%)

Query: 157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLS 216
           + + L   +++   ++ +       + +F  +E ++++   +      +     ++  L 
Sbjct: 46  EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 105

Query: 217 ISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLP 276
           +  N      P    N+  L ++ L  N    SLP  I  N P +  LS+  NN      
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 277 HSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNC 336
            +F   ++LQ L +  N  +    +D + + +L    +S N            L+ L   
Sbjct: 165 DTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNL-----------LSTLAIP 210

Query: 337 SQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYN 396
             +E L  +                          N I+  +   +              
Sbjct: 211 IAVEELDAS-------------------------HNSIN-VVRGPV-------------- 230

Query: 397 QLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGN 456
                          L  L L  N+L  T    L N   L  + L +N L+  +      
Sbjct: 231 ------------NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 457 CQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLH 516
            Q L      L +S N L  ++ L    +  L   DLS NH    +         LE L+
Sbjct: 277 MQRL----ERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330

Query: 517 LQGNSFSGSLPLSLKTLKSIKELDLSRNNLSG-QIPKYLENLLFLAYLNLSYN 568
           L  NS      L L T  ++K L LS N+     +     N+   A  +   +
Sbjct: 331 LDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (291), Expect = 2e-27
 Identities = 77/428 (17%), Positives = 151/428 (35%), Gaps = 33/428 (7%)

Query: 202 IPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNV 261
           I  +L        + I               +++ +I++  ++     LP  +  +   V
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 262 NFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT 321
             L++          ++F+ A  +Q L +  N         F  +  L+ L L +N+L  
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-- 135

Query: 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSE 381
              S L    +  N  ++  L ++ N    +   +    +  +  + +  N+++    S 
Sbjct: 136 ---SSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVDLSL 190

Query: 382 IKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFL 441
           I +L + N   V YN L+      +     ++ L    NS+          LT+L    L
Sbjct: 191 IPSLFHAN---VSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILK---L 239

Query: 442 GFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSN 500
             NNL     + L N   L      +DLS N L   I       ++ L    +S N    
Sbjct: 240 QHNNLTD--TAWLLNYPGL----VEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA 292

Query: 501 EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFL 560
            + +      TL+ L L  N     +  +      ++ L L  N++   +   L     L
Sbjct: 293 -LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 347

Query: 561 AYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITLLK 620
             L LS+N ++     + +F N     +   ++ C    +L    C     +     LL+
Sbjct: 348 KNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQ 406

Query: 621 VVIPVAVI 628
            +   +V+
Sbjct: 407 YIALTSVV 414

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.4 bits (224), Expect = 4e-19
 Identities = 66/309 (21%), Positives = 106/309 (34%), Gaps = 32/309 (10%)

Query: 268 QNNFTGSLPHSFSNASNLQVLDVYKN----HFSGQVKIDFN--RLSNLSRLFLSKNNLGT 321
           + N     P      SNLQ   V+ +      +  V   F    L+N   +    + +  
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65

Query: 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSE 381
              + LD    +      E+L LN  +   +   + A     I  + MG N I   +P  
Sbjct: 66  LPAALLDSFRQV------ELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIR-YLPPH 117

Query: 382 I-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLF 440
           + +N+  +    +E N L+            L  L++  N+L     DT    T L  L 
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 441 LGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSN 500
           L  N L     S + +  +        ++S NLL       +     + E D S N  + 
Sbjct: 178 LSSNRLTHVDLSLIPSLFHA-------NVSYNLLS-----TLAIPIAVEELDASHNSINV 225

Query: 501 EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFL 560
              V       L  L LQ N+ +      L     + E+DLS N L   +      +  L
Sbjct: 226 ---VRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 561 AYLNLSYNH 569
             L +S N 
Sbjct: 281 ERLYISNNR 289

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.3 bits (190), Expect = 5e-15
 Identities = 52/271 (19%), Positives = 94/271 (34%), Gaps = 39/271 (14%)

Query: 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSE 381
           E       L        + +     + + G    ++ N      ++   ++ +   +P+ 
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQ----KIVTFKNSTMR-KLPAA 69

Query: 382 I-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLF 440
           +  +   +    +   Q+     +A      +Q L +  N++R   P    N+ LL  L 
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 441 LGFNNLQGNVPSSLGNCQNLMTLS--------------------RLLDLSGNLLGGSIPL 480
           L  N+L         N   L TLS                    + L LS N L     +
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V 186

Query: 481 EVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELD 540
           ++  + +L   ++S N  S     TL+    +E L    NS +    +       +  L 
Sbjct: 187 DLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV---VRGPVNVELTILK 238

Query: 541 LSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
           L  NNL+     +L N   L  ++LSYN  E
Sbjct: 239 LQHNNLT-DTA-WLLNYPGLVEVDLSYNELE 267

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 57/416 (13%), Positives = 107/416 (25%), Gaps = 33/416 (7%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
             + +E +D   N  I            L  + +  N L       L     L  + +S 
Sbjct: 209 IPIAVEELDASHNS-INVVRG--PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSY 263

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N     +      +  LE + + +NR   +L L     IP +  L +  N+    +  + 
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQ 320

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
                L+ L +  N       +  +    L  L LS N+             L  N ++ 
Sbjct: 321 PQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW-----DCNSLRALFRNVARP 372

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
            +   + +      L                D      +   I     +        + +
Sbjct: 373 AVDDADQHCKIDYQLEHGL-------CCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCS 425

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQN 459
            T    I  +++L      +  +     + L     +N L      L           Q 
Sbjct: 426 AT--DTINSVQSLSHYITQQGGVPLQGNEQL--EAEVNELRAEVQQLTNEQIQQEQLLQG 481

Query: 460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTL-----SACTTLEY 514
           L            L    +     NL  +         F             +     E 
Sbjct: 482 LHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETED 541

Query: 515 LHLQGNSFSGSLPL-SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569
           L  +  +    L     K  +  +E  L R  +     K   N       +  ++H
Sbjct: 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHHH 597

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 3e-09
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 4/141 (2%)

Query: 444 NNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP--LEVGNLRNLAEFDLSENHFSNE 501
            N++   P       NL       D+  ++    +    E   L N        +     
Sbjct: 7   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 66

Query: 502 IPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLA 561
               L +   +E L+L           +     +I++L +  N +    P   +N+  L 
Sbjct: 67  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 562 YLNLSYNHFEGEVPRKGVFGN 582
            L L  N     +PR G+F N
Sbjct: 127 VLVLERNDLS-SLPR-GIFHN 145

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  114 bits (288), Expect = 3e-28
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 39  SYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEA 98
              DL +ATNNF    +IG G FG VYKG L   G  VA+K    +     + F TE E 
Sbjct: 30  PLVDLEEATNNFDHKFLIGHGVFGKVYKGVL-RDGAKVALKRRTPESSQGIEEFETEIET 88

Query: 99  LSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
           LS  RH +L+ +I  C        +   LIY+YM+ G+ +  ++ S+
Sbjct: 89  LSFCRHPHLVSLIGFCDE-----RNEMILIYKYMENGNLKRHLYGSD 130

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  113 bits (286), Expect = 6e-28
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 39  SYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECE 97
           S  +L  A++NFS  N++G+G FG VYKG+L   GT VAVK +  +  +G    F TE E
Sbjct: 21  SLRELQVASDNFSNKNILGRGGFGKVYKGRL-ADGTLVAVKRLKEERTQGGELQFQTEVE 79

Query: 98  ALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSND 146
            +S   HRNL+++   C +        + L+Y YM  GS    + +  +
Sbjct: 80  MISMAVHRNLLRLRGFCMT-----PTERLLVYPYMANGSVASCLRERPE 123

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (256), Expect = 5e-24
 Identities = 70/320 (21%), Positives = 118/320 (36%), Gaps = 32/320 (10%)

Query: 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH 294
            L ++       E  +P ++    P+   L +  N  T      F N  NL  L +  N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 295 FSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFL 354
            S      F  L  L RL+LSKN L  E    +   TL       + L ++ N+   V  
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQL-KELPEKM-PKTL-------QELRVHENEITKVRK 138

Query: 355 RSIANLSAKITVIGMGDNQI-SGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
                L+ ++ V+ +G N + S  I +   + +  ++   +    +T TIP   G   +L
Sbjct: 139 SVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSL 194

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
             L L  N +      +L  L  L +L L FN++      SL N  +L    R L L+ N
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL----RELHLNNN 250

Query: 473 LLGGSIPLEVGNLRNLAEFDLSENHFSN------EIPVTLSACTTLEYLHLQGNSFSGSL 526
            L   +P  + + + +    L  N+ S         P   +   +   + L  N      
Sbjct: 251 KL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 527 --PLSLKTLKSIKELDLSRN 544
             P + + +     + L   
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 14/235 (5%)

Query: 339 MEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL 398
             +L L  NK   +      NL   +  + + +N+IS   P     LV +    +  NQL
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNV--PSSLGN 456
              +P      K LQ L +  N +          L  +  + LG N L+ +     +   
Sbjct: 113 K-ELP--EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 457 CQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLH 516
            + L      + ++   +  +IP   G   +L E  L  N  +     +L     L  L 
Sbjct: 170 MKKL----SYIRIADTNIT-TIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 517 LQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
           L  NS S     SL     ++EL L+ N L  ++P  L +  ++  + L  N+  
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 7e-20
 Identities = 60/276 (21%), Positives = 97/276 (35%), Gaps = 36/276 (13%)

Query: 307 SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITV 366
            + + L L  N +      D   L  L        L L  NK   +   + A L  K+  
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHT------LILINNKISKISPGAFAPLV-KLER 104

Query: 367 IGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGT 425
           + +  NQ+   +P ++ K L  +    V  N++T         L  +  + L  N L+ +
Sbjct: 105 LYLSKNQLK-ELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 426 I--PDTLGNLTLLNRLFLGFNNL---QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL 480
                    +  L+ + +   N+      +P SL            L L GN +   +  
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL----------TELHLDGNKIT-KVDA 209

Query: 481 EV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKEL 539
                L NLA+  LS N  S     +L+    L  LHL  N     +P  L   K I+ +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 540 DLSRNNLSG------QIPKYLENLLFLAYLNLSYNH 569
            L  NN+S         P Y       + ++L  N 
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 49/293 (16%), Positives = 102/293 (34%), Gaps = 45/293 (15%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           NL  L  + + +N++    P   A    LE + +S N L   +P+ +   ++L  L + E
Sbjct: 74  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHE 130

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N  +         ++ + ++ L +N  + S        I                   +F
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSS-------GIE----------------NGAF 167

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
                L  + +   + +    I      +L+ L L  N +     + L  L  L      
Sbjct: 168 QGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL------ 218

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
             L L+ N    V   S+AN    +  + + +N++   +P  + +   I    +  N ++
Sbjct: 219 AKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

Query: 400 G------TIPHAIGELKNLQGLALVRNSLRGTI--PDTLGNLTLLNRLFLGFN 444
                    P    +  +  G++L  N ++     P T   + +   + LG  
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 39/195 (20%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
            + KL  I + D   I   P  +    +L  + +  N +      SL  L +L  L +S 
Sbjct: 169 GMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N+ S     S+ N   L  + L++N+                             +P   
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV--------------------------KVPGGL 259

Query: 280 SNASNLQVLDVYKNHFSG------QVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333
           ++   +QV+ ++ N+ S              + ++ S + L  N +         F  + 
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV- 318

Query: 334 TNCSQMEMLYLNTNK 348
                   + L   K
Sbjct: 319 ---YVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 487 NLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546
           +L     S+     ++P  L   T    L LQ N  +       K LK++  L L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 547 SGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNE 592
           S   P     L+ L  L LS N  + E+P   +      + +  NE
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENE 132

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSG 524
           R++  S   L   +P ++    + A  DL  N  +            L  L L  N  S 
Sbjct: 34  RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 525 SLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF--LAYLNLSYNH 569
             P +   L  ++ L LS+N L       L   +   L  L +  N 
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-----ELPEKMPKTLQELRVHENE 132

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (257), Expect = 2e-23
 Identities = 69/416 (16%), Positives = 139/416 (33%), Gaps = 53/416 (12%)

Query: 152 NLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRS 211
               I    L  L  +D  ++ +       I   + L  +  ++N +   +   L Q  +
Sbjct: 32  ATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITT-LD--LSQNTN 86

Query: 212 LNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNF 271
           L YL+   N  +    L +  ++ L  ++  +N+    L ++     P + +L+  +N  
Sbjct: 87  LTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLT-KLDVS---QNPLLTYLNCARNTL 139

Query: 272 TGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLT 331
           T  +    S+ + L  LD + N      K+D    + L+ L  S N +     ++LD   
Sbjct: 140 T-EID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKI-----TELDV-- 187

Query: 332 LLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAF 391
             +    +  L  +TN    + L     L    T +    N+++  I   +  L  +  F
Sbjct: 188 --SQNKLLNRLNCDTNNITKLDLNQNIQL----TFLDCSSNKLT-EID--VTPLTQLTYF 238

Query: 392 GVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP 451
               N LT  +   +  L  L  L  ++  L   I   L + T L          +    
Sbjct: 239 DCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQA--EGCRKIKE 290

Query: 452 SSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTT 511
             + +   L     LLD     +     L++     L    L+    +    + +S  T 
Sbjct: 291 LDVTHNTQL----YLLDCQAAGI---TELDLSQNPKLVYLYLNNTELTE---LDVSHNTK 340

Query: 512 LEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSY 567
           L+ L             S+  + ++     +         + L N      ++   
Sbjct: 341 LKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.8 bits (244), Expect = 7e-22
 Identities = 71/394 (18%), Positives = 142/394 (36%), Gaps = 56/394 (14%)

Query: 178 FPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE 237
           FPD   NF++  A              S  QL +L  L    ++ +  +   I  ++ L 
Sbjct: 15  FPD--DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLT 67

Query: 238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG 297
            +   SN    +L L+      N+ +L+   N  T +L    +  + L  L+   N  + 
Sbjct: 68  KLICTSNNIT-TLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT- 119

Query: 298 QVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI 357
             K+D ++   L+ L  ++N L     +++D    +++ +Q+  L  + NK   +    +
Sbjct: 120 --KLDVSQNPLLTYLNCARNTL-----TEID----VSHNTQLTELDCHLNKK--ITKLDV 166

Query: 358 ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLAL 417
              + ++T +    N+I+     ++     +N    + N +T  +   + +   L  L  
Sbjct: 167 TPQT-QLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDC 219

Query: 418 VRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS 477
             N L   I   +  LT L       N L       +     L TL          L   
Sbjct: 220 SSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTL----HCIQTDL--- 266

Query: 478 IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIK 537
           + +++ +   L  F         E+   ++  T L  L  Q    +    L L     + 
Sbjct: 267 LEIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLV 321

Query: 538 ELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
            L L+   L+ ++   + +   L  L+    H +
Sbjct: 322 YLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 36/314 (11%), Positives = 92/314 (29%), Gaps = 57/314 (18%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
              +L  +D   N++       ++    L  ++   N +  ++   L Q   L +L  S 
Sbjct: 168 PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSS 221

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N  +    + +  ++ L       N     L ++    +  +  L   Q +    +    
Sbjct: 222 NKLTE---IDVTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLL-EID--L 271

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQM 339
           ++ + L              ++D    + L  L      +     ++LD     +   ++
Sbjct: 272 THNTQLIYFQAEGCRKIK--ELDVTHNTQLYLLDCQAAGI-----TELDL----SQNPKL 320

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
             LYLN                         + +++  +   + +   + +       + 
Sbjct: 321 VYLYLN-------------------------NTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQN 459
                ++G++  L               +TL N +L   +     +  GN  +       
Sbjct: 353 -DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGG 410

Query: 460 LMTLSRLLDLSGNL 473
           +   +       NL
Sbjct: 411 VYDQATNTITWENL 424

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (255), Expect = 3e-23
 Identities = 81/398 (20%), Positives = 144/398 (36%), Gaps = 37/398 (9%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQ-LRSLNYLSISENNF 222
           +  +D+  N +        +    L+ + +     G  I ++  + L SL  L +  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 223 SCKLPLSI-WNISSLEIISLHSNRFEGS-LPLNIGFNIPNVNFLSVGQNNFTGSLPHS-F 279
             +L       +++LE+++L     +G+ L  N    + ++  L +  NN     P S F
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRL--SNLSRLFLSKNNLGTESTSDLDFLT--LLTN 335
            N     VLD+  N      + D       + + L LS   L   +   L +        
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 336 CSQMEMLYLNTNKFG----GVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAF 391
            + +  L L+ N F       F  +IA    +  ++    N  S    +  K+  N    
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 392 GVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP 451
           G+E + +                  L ++ +   +     + T L +L L  N +     
Sbjct: 271 GLEASGVKT--------------CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 452 SSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPV-TLSAC 509
           ++     +L      L+LS N LG SI   +  NL  L   DLS NH    +   +    
Sbjct: 317 NAFWGLTHL----LKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGL 370

Query: 510 TTLEYLHLQGNSFSGSLPLS-LKTLKSIKELDLSRNNL 546
             L+ L L  N    S+P      L S++++ L  N  
Sbjct: 371 PNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 72/400 (18%), Positives = 137/400 (34%), Gaps = 44/400 (11%)

Query: 211 SLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNN 270
            +NY+ +S N+ +     S   +  L+ + +        +  N    + ++  L +  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 271 FTGSLPHSFSNASNLQVLDVYKNHFSGQV--KIDFNRLSNLSRLFLSKNNLGTESTSDLD 328
           F      +F+  +NL+VL + + +  G V     F  L++L  L L  NN+       + 
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-----KKIQ 145

Query: 329 FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAK-ITVIGMGDNQISGTIPSEIKNLVN 387
             +   N  +  +L L  NK   +    + N   K  T++ +    +       +     
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
            N F                   ++  L L  N  + ++     +     ++     +  
Sbjct: 206 GNPFK----------------NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 448 GNVPSSLGNCQNLMTLSRL------------LDLSGNLLGGSIPLEV-GNLRNLAEFDLS 494
            N+ SS G   N                    DLS + +  ++   V  +  +L +  L+
Sbjct: 250 YNMGSSFG-HTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLA 307

Query: 495 ENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYL 554
           +N  +          T L  L+L  N          + L  ++ LDLS N++     +  
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

Query: 555 ENLLFLAYLNLSYNHFEGEVPRKGVF---GNRTGIHLIGN 591
             L  L  L L  N  +  VP  G+F    +   I L  N
Sbjct: 368 LGLPNLKELALDTNQLK-SVPD-GIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.7 bits (228), Expect = 8e-20
 Identities = 70/342 (20%), Positives = 118/342 (34%), Gaps = 35/342 (10%)

Query: 257 NIP-NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFL 314
            +P +VN++ +  N+       SFS   +LQ L V +      ++ + F  LS+L  L L
Sbjct: 27  ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA--NLSAKITVIGMGDN 372
             N      T   + L  L        L L      G  L       L+  + ++ + DN
Sbjct: 87  DYNQFLQLETGAFNGLANLEV------LTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDN 139

Query: 373 QISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAI-----------GELKNLQGLALVRN 420
            I    P+    N+   +   + +N++  +I                 L ++    +   
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 421 SLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL-LDLSGNLLGGSIP 479
            L           T +  L L  N  + ++     +      +  L L  S N+      
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 480 LEVGNLRNLA----------EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLS 529
               +  N              DLS++     +    S  T LE L L  N  +     +
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318

Query: 530 LKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
              L  + +L+LS+N L     +  ENL  L  L+LSYNH  
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 52/267 (19%), Positives = 79/267 (29%), Gaps = 23/267 (8%)

Query: 354 LRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPH-AIGELKNL 412
           L  +  L A +  + +  N I+    +    L ++    VE       I +     L +L
Sbjct: 22  LHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNV--PSSLGNCQNLMTLSRLLDLS 470
             L L  N            L  L  L L   NL G V   +      +L     +L L 
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL----EMLVLR 137

Query: 471 GNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACT--TLEYLHLQGN------- 520
            N +    P     N+R     DL+ N   +     L          L L          
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 521 -SFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF---LAYLNLSYNHFEGEVPR 576
                    +     SI  LDLS N     + K   + +    +  L LS ++  G    
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 577 KGVFGNRTGIHLIGNERLCGGLEELHL 603
              F +       G E    G++   L
Sbjct: 258 HTNFKDPDNFTFKGLEA--SGVKTCDL 282

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.8 bits (171), Expect = 9e-13
 Identities = 56/341 (16%), Positives = 115/341 (33%), Gaps = 62/341 (18%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRI--PDSLCQLRSLNYLSI 217
            L  L ++ +  NQ +          + LE + ++   L G +   +    L SL  L +
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 218 SENNFSCKLPLSIW-NISSLEIISLHSNRFEGSLPLNI----------GFNIPNVNFLSV 266
            +NN     P S + N+    ++ L  N+ + S+                 + ++    +
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDM 195

Query: 267 GQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRL-------------F 313
            +         +    +++  LD+  N F   +   F      +++              
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 314 LSKNNLGTES--------TSDLDFLTL------------LTNCSQMEMLYLNTNKF---- 349
               N              S +    L             ++ + +E L L  N+     
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315

Query: 350 GGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPH-AIG 407
              F   + +L      + +  N +  +I S + +NL  +    + YN +   +   +  
Sbjct: 316 DNAF-WGLTHL----LKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL 368

Query: 408 ELKNLQGLALVRNSLRGTIPD-TLGNLTLLNRLFLGFNNLQ 447
            L NL+ LAL  N L+ ++PD     LT L +++L  N   
Sbjct: 369 GLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  102 bits (256), Expect = 4e-23
 Identities = 85/437 (19%), Positives = 153/437 (35%), Gaps = 27/437 (6%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           +L KL ++ +  N++             LE +D+S N L            +L +L +S 
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHLDLSF 99

Query: 220 NNFSC-KLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
           N F    +     N+S L+ + L +   E S  L I     +   L +G+       P  
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159

Query: 279 FSN--ASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNC 336
             +    +L ++      F   + +    ++NL    +       + +  L  L  L   
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 337 SQMEMLYLNTNKFGGVFLRSIANLSAKITV--IGMGDNQISGTIPSEI-----KNLVNIN 389
            ++  L LN  +        I  L    TV    + + ++ G +          +L  ++
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 390 AFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN 449
              V  +       +      N+       +  R         ++    L    N L   
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 450 VPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG---NLRNLAEFDLSENHFSNEIP-VT 505
           V     NC +L  L   L L  N L   +         +++L + D+S+N  S +     
Sbjct: 340 VF---ENCGHLTELET-LILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 506 LSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNL 565
            S   +L  L++  N  + ++   L     IK LDL  N +   IPK +  L  L  LN+
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451

Query: 566 SYNHFEGEVPRKGVFGN 582
           + N  +  VP  G+F  
Sbjct: 452 ASNQLK-SVPD-GIFDR 466

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 4e-20
 Identities = 66/404 (16%), Positives = 131/404 (32%), Gaps = 28/404 (6%)

Query: 160 NLLKLEMIDVGDNQL--IGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSI 217
             + L+ +D+  N    +    +F  N S L+ + +S   L       +  L     L +
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 218 SENNFSCKLP---LSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS 274
               +  K     L  +N  SL I+   +  F   +       + N+   ++        
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH-FILDVSVKTVANLELSNIKCVLEDNK 205

Query: 275 LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRL---------SNLSRLFLSKNNLGTESTS 325
             +  S  + LQ      N     ++  +N           + +    +S   L  +   
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265

Query: 326 DLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNL 385
             DF    T+   + +  + ++ FG          S  + +     +            +
Sbjct: 266 R-DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLCPSKI 323

Query: 386 VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLG---NLTLLNRLFLG 442
                     N LT T+    G L  L+ L L  N L+  +         +  L +L + 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDIS 382

Query: 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEI 502
            N++  +     G+C    +L   L++S N+L  +I   +     +   DL  N     I
Sbjct: 383 QNSVSYDEKK--GDCSWTKSL-LSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SI 436

Query: 503 PVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546
           P  +     L+ L++  N            L S++++ L  N  
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 69/404 (17%), Positives = 138/404 (34%), Gaps = 18/404 (4%)

Query: 186 SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNR 245
                ++IS N +       +  L  L  L IS N               LE + L  N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 246 FEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS--FSNASNLQVLDVYKNHFSGQVKIDF 303
               +  +      N+  L +  N F  +LP    F N S L+ L +   H      +  
Sbjct: 81  LV-KISCH---PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 304 NRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAK 363
             L+    L +     G +   +        +   +       +    V ++++ANL   
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 364 ITVIGMGDNQISG--TIPSEIKNLVNINAFGVEYNQLTGTIPHAIGEL---KNLQGLALV 418
                + DN+ S   +I ++++    ++   +   + T      I +L     +   ++ 
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 419 RNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNC-QNLMTLSRLLDLSGNLLGGS 477
              L+G +     + +  +   L  + +  +V     +    + +   + + + +     
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 478 IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLS---LKTLK 534
             L    +      D S N  ++ +       T LE L LQ N     L         +K
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMK 374

Query: 535 SIKELDLSRNNLSGQIPK-YLENLLFLAYLNLSYNHFEGEVPRK 577
           S+++LD+S+N++S    K        L  LN+S N     + R 
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 57/361 (15%), Positives = 108/361 (29%), Gaps = 21/361 (5%)

Query: 234 SSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKN 293
               I+++  N     L  +   ++  +  L +  N         F     L+ LD+  N
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 294 HFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVF 353
                 KI  +   NL  L LS N         L       N SQ++ L L+T       
Sbjct: 80  KLV---KISCHPTVNLKHLDLSFNAF-----DALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 354 LRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGV--EYNQLTGTIPHAIGELKN 411
           +  IA+L+    ++ +G+       P  +++    +   V     +    +  ++  + N
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 412 LQGLALVRNSLRGTIPDTLGNLTLLNR------LFLGFNNLQGNVPSSLGNCQNLMTLSR 465
           L+   +            L  L  L        L L       N    +       T+  
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 466 L----LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS 521
                + L G L          +L+ L+   +  + F           + +   +   + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 522 FSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFG 581
                 L    +     LD S N L+  + +   +L  L  L L  N  +       +  
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 582 N 582
            
Sbjct: 372 Q 372

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 46/239 (19%), Positives = 90/239 (37%), Gaps = 12/239 (5%)

Query: 211 SLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNI-PNVNFLSVGQN 269
           S++ + +           S  ++ +L I  + S+ F    P +  + I  N+N  +   +
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310

Query: 270 NFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDF 329
                     S  S    LD   N  +  V  +   L+ L  L L  N L   S      
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 330 LTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNIN 389
             +      ++ L ++ N       +   + +  +  + M  N ++ TI   +     I 
Sbjct: 371 TQM----KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIK 424

Query: 390 AFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPD-TLGNLTLLNRLFLGFNNLQ 447
              +  N++  +IP  + +L+ LQ L +  N L+ ++PD     LT L +++L  N   
Sbjct: 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 45/262 (17%), Positives = 80/262 (30%), Gaps = 15/262 (5%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           L  +  +LS K T++ +  N IS    S+I +L  +    + +N++           + L
Sbjct: 12  LIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL--LDLS 470
           + L L  N L         NL  L+   L FN        +L  C+    +S+L  L LS
Sbjct: 72  EYLDLSHNKLVKISCHPTVNLKHLD---LSFNAFD-----ALPICKEFGNMSQLKFLGLS 123

Query: 471 GNLLGGSIPLEVGNLRNLAEF-DLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLS 529
              L  S  L + +L        L E +   E P  L          L     +      
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ---DFNTESLHIVFPTNKEFHF 180

Query: 530 LKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLI 589
           +  +      +L  +N+   +     +        L  N     +    +         I
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 590 GNERLCGGLEELHLPSCHFGRP 611
                   +    + +      
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQ 262

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 4/160 (2%)

Query: 459 NLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQ 518
           +L   + +L++S N +      ++ +L  L    +S N               LEYL L 
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 519 GNSFSGSLPLSLKTLKSIKELDLSRNNL-SGQIPKYLENLLFLAYLNLSYNHFEGEVPRK 577
            N       +S     ++K LDLS N   +  I K   N+  L +L LS  H E      
Sbjct: 78  HNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 578 GVFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRIT 617
               N + + L+  E      +   L   +     I   T
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (253), Expect = 1e-22
 Identities = 64/305 (20%), Positives = 111/305 (36%), Gaps = 46/305 (15%)

Query: 274 SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333
           S+    +N  +L     Y N  SG     F+      +  L   N         + ++LL
Sbjct: 2   SIMLPINNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRN-------EAVSLL 53

Query: 334 TNC--SQMEMLYLNTNKFGGVFLRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINA 390
             C  +Q   L LN        L S+  NL  +ITV+ +  N +  ++P    +L  ++ 
Sbjct: 54  KECLINQFSELQLNRLN-----LSSLPDNLPPQITVLEITQNALI-SLPELPASLEYLD- 106

Query: 391 FGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNV 450
                N+L+ T+P     LK+L    +  N L   +P+    L  +N      N L   +
Sbjct: 107 --ACDNRLS-TLPELPASLKHLD---VDNNQLT-MLPELPALLEYIN---ADNNQLT-ML 155

Query: 451 PSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT 510
           P    +      L  +L +  N L   +P    +L  L   D+S N     +P       
Sbjct: 156 PELPTS------L-EVLSVRNNQLT-FLPELPESLEAL---DVSTNLLE-SLPAVPVRNH 203

Query: 511 TLE----YLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLS 566
             E    +   + N  +  +P ++ +L     + L  N LS +I + L         +  
Sbjct: 204 HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

Query: 567 YNHFE 571
             +F 
Sbjct: 263 RIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (252), Expect = 1e-22
 Identities = 62/353 (17%), Positives = 116/353 (32%), Gaps = 62/353 (17%)

Query: 209 LRSLNYLSISENNFSCKLPLSIWNI----SSLEIISLHSNRFEGSLPLNIGFNIPNVNFL 264
           L   N  S+S+N+F   +  +  +        E  +L       ++ L     I   + L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 265 SVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTEST 324
            + + N + SLP +      + VL++ +N       +     ++L  L    N L T   
Sbjct: 65  QLNRLNLS-SLPDNL--PPQITVLEITQNALI---SLP-ELPASLEYLDACDNRLST--- 114

Query: 325 SDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKN 384
                  L    + ++ L ++                         +NQ++  +P     
Sbjct: 115 -------LPELPASLKHLDVD-------------------------NNQLT-MLPELPAL 141

Query: 385 LVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFN 444
           L  IN    + NQLT  +P       +L+ L++  N L   +P+   +L  L+   +  N
Sbjct: 142 LEYIN---ADNNQLT-MLPELPT---SLEVLSVRNNQLT-FLPELPESLEALD---VSTN 190

Query: 445 NLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPV 504
            L+ ++P+      +            N +   IP  + +L       L +N  S+ I  
Sbjct: 191 LLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 505 TLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL 557
           +LS  T     H     FS S              D             +  +
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.0 bits (236), Expect = 1e-20
 Identities = 73/438 (16%), Positives = 146/438 (33%), Gaps = 55/438 (12%)

Query: 155 LIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISA---NMLGGRIPDSLCQLRS 211
           ++   N   L   +   N + G + D+ + +   E   +     N     + +  C +  
Sbjct: 4   MLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQ 60

Query: 212 LNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNF 271
            + L ++  N S  LP ++     + ++ +  N    SLP        ++ +L    N  
Sbjct: 61  FSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPA----SLEYLDACDNRL 112

Query: 272 TGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLT 331
           + +LP      ++L+ LDV  N  +    +     + L  +    N L            
Sbjct: 113 S-TLPELP---ASLKHLDVDNNQLT---MLP-ELPALLEYINADNNQLT----------M 154

Query: 332 LLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVN---- 387
           L    + +E+L +  N+     L  +  L   +  + +  N +  ++P+      +    
Sbjct: 155 LPELPTSLEVLSVRNNQ-----LTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEET 208

Query: 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
              F    N++T  IP  I  L     + L  N L   I ++L   T     + G     
Sbjct: 209 EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ-PDYHGPRIYF 266

Query: 448 GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLS 507
                        +  +       N        +V  + +  E +   N FS  +     
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWFPEN-----KQSDVSQIWHAFEHEEHANTFSAFLD---R 318

Query: 508 ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSY 567
              T+   +  G  F   +   L+ L +  EL      ++    +  E+ + L + NL  
Sbjct: 319 LSDTVSARNTSG--FREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRK 376

Query: 568 NHFEGEVPRKGVFGNRTG 585
                    +G+F N TG
Sbjct: 377 TLLV-HQASEGLFDNDTG 393

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 34/218 (15%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 163 KLEMIDVGDNQLIGKFPDFIANFSALE----AIDISANMLGGRIPDSLCQLRSLNYLSIS 218
            LE +DV  N L    P         E          N +   IP+++  L     + + 
Sbjct: 181 SLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 219 ENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQN--------- 269
           +N  S ++  S+   ++          F  S       + P  + ++             
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

Query: 270 --NFTGSLPHS---FSNASNLQVLDVYKNH--FSGQVKIDFNRLSNLSRLFLSKNNLGTE 322
             +      H+    +    L      +N   F  QV     +LS  + L      +  +
Sbjct: 299 IWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAAD 358

Query: 323 STSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL 360
           +T   +    LT  + +    L      G+F      L
Sbjct: 359 ATESCEDRVALTW-NNLRKTLLVHQASEGLFDNDTGAL 395

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 96.1 bits (240), Expect = 5e-22
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 17/119 (14%)

Query: 39  SYADLSKATNNFS------ASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA--- 89
           S+ +L   TNNF         N +G+G FG VYKG +    TTVAVK +           
Sbjct: 16  SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN--NTTVAVKKLAAMVDITTEEL 73

Query: 90  -KSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
            + F  E + ++  +H NL++++   S       D   L+Y YM  GS  D +   +  
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSD-----GDDLCLVYVYMPNGSLLDRLSCLDGT 127

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 51/284 (17%), Positives = 93/284 (32%), Gaps = 44/284 (15%)

Query: 269 NNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLD 328
              T S+P      S+   L++  N         F++L+ L++L LS N L  +      
Sbjct: 17  KGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73

Query: 329 FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNI 388
                   + ++ L L+                          N +  T+ S    L  +
Sbjct: 74  DFGT----TSLKYLDLS-------------------------FNGVI-TMSSNFLGLEQL 103

Query: 389 NAFGVEYNQLTGTIPH-AIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
                +++ L           L+NL  L +     R         L+ L  L +  N+ Q
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 448 GNVPS-SLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVT 505
            N         +NL      LDLS   L   +      +L +L   ++S N+F +     
Sbjct: 164 ENFLPDIFTELRNL----TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 506 LSACTTLEYLHLQGNSFSGSLPLSL--KTLKSIKELDLSRNNLS 547
                +L+ L    N    +           S+  L+L++N+ +
Sbjct: 219 YKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 55/269 (20%), Positives = 103/269 (38%), Gaps = 41/269 (15%)

Query: 307 SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITV 366
           S+ +RL L  N L +      D LT L        L L++N                ++ 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQL------TKLSLSSNG---------------LSF 66

Query: 367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTI 426
            G       G          ++    + +N +  T+      L+ L+ L    ++L+  +
Sbjct: 67  KGCCSQSDFG--------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QM 116

Query: 427 PD--TLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-G 483
            +     +L  L  L +   + +           +L     +L ++GN    +   ++  
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL----EVLKMAGNSFQENFLPDIFT 172

Query: 484 NLRNLAEFDLSENHFSNEIPVTLSACTT-LEYLHLQGNSFSGSLPLSLKTLKSIKELDLS 542
            LRNL   DLS+     ++  T     + L+ L++  N+F        K L S++ LD S
Sbjct: 173 ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

Query: 543 RNNLSGQIPKYLENLL-FLAYLNLSYNHF 570
            N++     + L++    LA+LNL+ N F
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 51/276 (18%), Positives = 91/276 (32%), Gaps = 33/276 (11%)

Query: 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH 294
           S   I  +S     S+P  I     +   L +  N         F   + L  L +  N 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 295 FSGQ--VKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV 352
            S +          ++L  L LS N +    +S+   L  L +      L    +     
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEH------LDFQHSN---- 112

Query: 353 FLRSIANLSA-----KITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTI-PHA 405
            L+ ++  S       +  + +          + I   L ++    +  N       P  
Sbjct: 113 -LKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 406 IGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSR 465
             EL+NL  L L +  L    P    +L+ L  L +  NN             +L    +
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL----Q 226

Query: 466 LLDLSGNLLGGSIPLEV--GNLRNLAEFDLSENHFS 499
           +LD S N +  +   +       +LA  +L++N F+
Sbjct: 227 VLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.0 bits (216), Expect = 6e-19
 Identities = 47/247 (19%), Positives = 87/247 (35%), Gaps = 16/247 (6%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT--GTIPHAIGELK 410
           L S+   + +  T + +  N++          L  +    +  N L+  G    +     
Sbjct: 19  LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 411 NLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL-GNCQNLMTLSRLLDL 469
           +L+ L L  N +  T+      L  L  L    +NL+     S+  + +NL      LD+
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL----IYLDI 133

Query: 470 SGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEI-PVTLSACTTLEYLHLQGNSFSGSLP 527
           S           +   L +L    ++ N F     P   +    L +L L         P
Sbjct: 134 SHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192

Query: 528 LSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR---KGVFGNRT 584
            +  +L S++ L++S NN         + L  L  L+ S NH      +   +    +  
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLA 251

Query: 585 GIHLIGN 591
            ++L  N
Sbjct: 252 FLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 37/178 (20%), Positives = 60/178 (33%), Gaps = 8/178 (4%)

Query: 396 NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG 455
             LT ++P  I    +   L L  N L+         LT L +L L  N L         
Sbjct: 17  KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQ 72

Query: 456 NCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPV-TLSACTTLEY 514
           +     +L + LDLS N +  ++      L  L   D   ++           +   L Y
Sbjct: 73  SDFGTTSL-KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 515 LHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY-LENLLFLAYLNLSYNHFE 571
           L +       +       L S++ L ++ N+            L  L +L+LS    E
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 7/207 (3%)

Query: 144 SNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP 203
           S++ L               L+ +D+  N +I    +F      LE +D   + L     
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSE 118

Query: 204 DSLCQ-LRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVN 262
            S+   LR+L YL IS  +           +SSLE++ +  N F+ +   +I   + N+ 
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 263 FLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTE 322
           FL + Q       P +F++ S+LQVL++  N+F       +  L++L  L  S N++ T 
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

Query: 323 STSDLDFLTLLTNCSQMEMLYLNTNKF 349
              +L         S +  L L  N F
Sbjct: 239 KKQELQHFP-----SSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 39/233 (16%), Positives = 86/233 (36%), Gaps = 22/233 (9%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGR--IPDSLCQLRSLNYLSISENN 221
              +++  N+L           + L  + +S+N L  +     S     SL YL +S N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 222 FSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSN 281
               +  +   +  LE +    +  +     ++  ++ N+ +L +   +   +    F+ 
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 282 ASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLT------ 334
            S+L+VL +  N F      D F  L NL+ L LS+  L   S +  + L+ L       
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 335 ------------NCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQIS 375
                         + +++L  + N       + + +  + +  + +  N  +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 91.8 bits (228), Expect = 2e-20
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 39  SYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECE- 97
           + ++ S   +N     +IG+G +G VYKG L      VAVKV +   +   ++F+ E   
Sbjct: 4   AASEPSLDLDNLKLLELIGRGRYGAVYKGSLD--ERPVAVKVFSFANR---QNFINEKNI 58

Query: 98  -ALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQS 144
             +  + H N+ + I     +   G     L+ EY   GS   ++   
Sbjct: 59  YRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH 106

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 57/290 (19%), Positives = 100/290 (34%), Gaps = 39/290 (13%)

Query: 307 SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITV 366
            + + L L  N++      D   L  L        L L  NK   +  ++ + L  K+  
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYA------LVLVNNKISKIHEKAFSPLR-KLQK 106

Query: 367 IGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGT 425
           + +  N +   IP  +  +LV +    +  N++          L+N+  + +  N L  +
Sbjct: 107 LYISKNHLV-EIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 426 I--PDTLGNLTLLNRLFLGFNNL---QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL 480
              P     L L   L +    L     ++P +L            L L  N +  +I L
Sbjct: 163 GFEPGAFDGLKLN-YLRISEAKLTGIPKDLPETL----------NELHLDHNKIQ-AIEL 210

Query: 481 EV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKEL 539
           E       L    L  N        +LS   TL  LHL  N  S  +P  L  LK ++ +
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 540 DLSRNNLSGQIP-------KYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
            L  NN++ ++         +     +   ++L  N       +   F  
Sbjct: 270 YLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 53/327 (16%), Positives = 107/327 (32%), Gaps = 47/327 (14%)

Query: 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH 294
            L ++       + ++P  I    P+   L +  N+ +      F    +L  L +  N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 295 FSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL---------------TNCSQM 339
            S   +  F+ L  L +L++SKN+L     +    L  L               +    M
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 340 EMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
             + +  N          A    K+  + + + +++  IP ++     +N   +++N++ 
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ 206

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQN 459
                 +     L  L L  N +R     +L  L  L  L L  N L   VP+ L + + 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265

Query: 460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQG 519
           L    +++ L  N           N+  +   D     F  +             + L  
Sbjct: 266 L----QVVYLHTN-----------NITKVGVNDFCPVGFGVKRA-------YYNGISLFN 303

Query: 520 N--SFSGSLPLSLKTLKSIKELDLSRN 544
           N   +    P + + +     +     
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 53/318 (16%), Positives = 102/318 (32%), Gaps = 46/318 (14%)

Query: 185 FSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN 244
                 +D+  N +     D    L+ L  L +  N                 I  +H  
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK----------------ISKIHEK 96

Query: 245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFN 304
            F           +  +  L + +N+     P+     S+L  L ++ N      K  F+
Sbjct: 97  AFSP---------LRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFS 144

Query: 305 RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI-ANLSAK 363
            L N++ + +  N L         F  L     ++  L ++  K     L  I  +L   
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGL-----KLNYLRISEAK-----LTGIPKDLPET 194

Query: 364 ITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSL 422
           +  + +  N+I   I  E       +   G+ +NQ+      ++  L  L+ L L  N L
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 423 RGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL--LDLSGNLLG-GSIP 479
              +P  L +L LL  ++L  NN+     +        +  +    + L  N +    + 
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 480 LEV-GNLRNLAEFDLSEN 496
                 + +         
Sbjct: 313 PATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 6/187 (3%)

Query: 163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLG-GRIPDSLCQLRSLNYLSISENN 221
            L  + + DN++        +    +  I++  N L              LNYL ISE  
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 222 FSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSN 281
            +  +P  +    +L  + L  N+ + ++ L        +  L +G N        S S 
Sbjct: 184 LT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 282 ASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEM 341
              L+ L +  N  S +V      L  L  ++L  NN+     +D   +      +    
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298

Query: 342 LYLNTNK 348
           + L  N 
Sbjct: 299 ISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 23/169 (13%), Positives = 58/169 (34%), Gaps = 17/169 (10%)

Query: 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPD-SLCQLRSLNYLSI 217
            + LKL  + + + +L    P  +     L  + +  N +   I    L +   L  L +
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 218 SENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH 277
             N        S+  + +L  + L +N+    +P  +  ++  +  + +  NN T    +
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVN 282

Query: 278 SFS------NASNLQVLDVYKNHFSGQVKID---FNRLSNLSRLFLSKN 317
            F         +    + ++ N      ++    F  +++   +     
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVP-YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 487 NLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546
           +L     S+      +P  +S  TT   L LQ N  S       K L+ +  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTT--LLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 547 SGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNE 592
           S    K    L  L  L +S NH   E+P   +  +   + +  N 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIP-PNLPSSLVELRIHDNR 134

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 4e-19
 Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 8/217 (3%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           LR +   +S    ++ + +NQI     +  K+L ++    +  N +      A   L NL
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
             L L  N L          L+ L  L+L  N ++     +     +L    R LDL   
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL----RRLDLGEL 170

Query: 473 LLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLK 531
                I       L NL   +L+  +   EIP  L+    L+ L L GN  S   P S +
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 532 TLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
            L  +++L + ++ +        +NL  L  +NL++N
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.3 bits (219), Expect = 1e-18
 Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 10/234 (4%)

Query: 337 SQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEY 395
           +   +L L+ N+   + + S  +L   + ++ +  N I  TI       L N+N   +  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 396 NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPS-SL 454
           N+LT     A   L  L+ L L  N +          +  L RL LG       +   + 
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 455 GNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEY 514
               NL    R L+L+   L   IP  +  L  L E DLS NH S   P +      L+ 
Sbjct: 182 EGLSNL----RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 515 LHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
           L +  +        +   L+S+ E++L+ NNL+         L  L  ++L +N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 55/282 (19%), Positives = 97/282 (34%), Gaps = 47/282 (16%)

Query: 269 NNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLD 328
            N    +P   S  +N ++L++++N         F  L +L  L LS+N++ T       
Sbjct: 53  KNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG--- 106

Query: 329 FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVN 387
                   + +  L L                          DN+++ TIP+     L  
Sbjct: 107 ---AFNGLANLNTLELF-------------------------DNRLT-TIPNGAFVYLSK 137

Query: 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVR-NSLRGTIPDTLGNLTLLNRLFLGFNNL 446
           +    +  N +     +A   + +L+ L L     L          L+ L  L L   NL
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 447 QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVT 505
                  + N   L+ L  L DLSGN L  +I       L +L +  + ++         
Sbjct: 198 -----REIPNLTPLIKLDEL-DLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 506 LSACTTLEYLHLQGNSFSGSLPLS-LKTLKSIKELDLSRNNL 546
                +L  ++L  N+ +  LP      L  ++ + L  N  
Sbjct: 251 FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.4 bits (196), Expect = 7e-16
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 12/178 (6%)

Query: 396 NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG 455
             L   +P  I    N + L L  N ++    ++  +L  L  L L  N+++     +  
Sbjct: 53  KNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109

Query: 456 NCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEY 514
              NL      L+L  N L  +IP      L  L E  L  N   +      +   +L  
Sbjct: 110 GLANL----NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 515 LHLQGNSFSGSLPL-SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
           L L        +   + + L +++ L+L+  NL  +IP  L  L+ L  L+LS NH  
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 11/247 (4%)

Query: 201 RIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPN 260
            +PD +    +   L++ EN        S  ++  LEI+ L  N    ++ +     + N
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113

Query: 261 VNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLG 320
           +N L +  N  T     +F   S L+ L +  N         FNR+ +L RL L +    
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173

Query: 321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS 380
           +  +            S +  L L         + ++  L  K+  + +  N +S   P 
Sbjct: 174 SYISEGA-----FEGLSNLRYLNLAMCNL--REIPNLTPLI-KLDELDLSGNHLSAIRPG 225

Query: 381 EIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLF 440
             + L+++    +  +Q+     +A   L++L  + L  N+L     D    L  L R+ 
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285

Query: 441 LGFNNLQ 447
           L  N   
Sbjct: 286 LHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 43/221 (19%), Positives = 91/221 (41%), Gaps = 14/221 (6%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
             ++++ +NQ+     +   +   LE + +S N +      +   L +LN L + +N  +
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 224 CKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLP-HSFSNA 282
                +   +S L+ + L +N  E S+P      IP++  L +G+      +   +F   
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 283 SNLQVLDVYKNHFSGQVKI-DFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEM 341
           SNL+ L++   +     +I +   L  L  L LS N+L          L  L        
Sbjct: 185 SNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK------ 235

Query: 342 LYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI 382
           L++  ++   +   +  NL   +  I +  N ++  +P ++
Sbjct: 236 LWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLT-LLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 31/154 (20%), Positives = 44/154 (28%), Gaps = 23/154 (14%)

Query: 464 SRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522
              +      L   +P  +  N R L   +L EN        +      LE L L  N  
Sbjct: 45  FSKVICVRKNLR-EVPDGISTNTRLL---NLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582
                 +   L ++  L+L  N L+         L  L  L L  N  E  +P    F  
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIP-SYAFNR 158

Query: 583 RTGIHLIGNERLCGGLEELHLPSCHFGRPRITRI 616
                          L  L L        R++ I
Sbjct: 159 ------------IPSLRRLDLGEL----KRLSYI 176

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 5e-19
 Identities = 54/218 (24%), Positives = 83/218 (38%), Gaps = 8/218 (3%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           L+++   + A    I +  N+IS    +  +   N+    +  N L      A   L  L
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 413 QGLALVRNSLRGTIP-DTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSG 471
           + L L  N+   ++   T   L  L+ L L    LQ   P        L    + L L  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL----QYLYLQD 138

Query: 472 NLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSL 530
           N L  ++P +   +L NL    L  N  S+          +L+ L L  N  +   P + 
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 531 KTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
           + L  +  L L  NNLS    + L  L  L YL L+ N
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 57/281 (20%), Positives = 89/281 (31%), Gaps = 67/281 (23%)

Query: 269 NNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLD 328
                ++P      +  Q + ++ N  S      F    NL+ L+L  N L     +   
Sbjct: 21  QGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 329 FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNI 388
            L LL        L L+ N                         Q+  ++          
Sbjct: 78  GLALLEQ------LDLSDN------------------------AQLR-SVD--------- 97

Query: 389 NAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTLGNLTLLNRLFLGFNNLQ 447
                         P     L  L  L L R  L+  +       L  L  L+L  N LQ
Sbjct: 98  --------------PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142

Query: 448 GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTL 506
                +  +  NL      L L GN +  S+P      L +L    L +N  ++  P   
Sbjct: 143 ALPDDTFRDLGNL----THLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 507 SACTTLEYLHLQGNSFSGSLPLS-LKTLKSIKELDLSRNNL 546
                L  L+L  N+ S +LP   L  L++++ L L+ N  
Sbjct: 198 RDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 44/211 (20%), Positives = 63/211 (29%), Gaps = 22/211 (10%)

Query: 394 EYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSS 453
               L   +P  I      Q + L  N +      +      L  L+L  N L     ++
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 454 LGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTL 512
                 L      LDLS N    S+       L  L    L         P        L
Sbjct: 76  FTGLALL----EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 513 EYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572
           +YL+LQ N+       + + L ++  L L  N +S    +    L  L  L L  N    
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA- 190

Query: 573 EVPRKGVFGNRTGIHLIGNERLCGGLEELHL 603
            V     F +             G L  L+L
Sbjct: 191 HVHP-HAFRD------------LGRLMTLYL 208

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 50/216 (23%), Positives = 82/216 (37%), Gaps = 11/216 (5%)

Query: 234 SSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKN 293
           ++ + I LH NR    +P        N+  L +  N        +F+  + L+ LD+  N
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 294 HFSGQVKID-FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV 352
                V    F+ L  L  L L +  L          L  L        LYL  N    +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY------LYLQDNALQAL 144

Query: 353 FLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKN 411
              +  +L   +T + +  N+IS ++P    + L +++   +  N++    PHA  +L  
Sbjct: 145 PDDTFRDLGN-LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 412 LQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
           L  L L  N+L     + L  L  L  L L  N   
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 9/210 (4%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
            + I +  N++             L  + + +N+L      +   L  L  L +S+N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 224 CKLPLSIW-NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNA 282
             +  + +  +  L  + L     +  L   +   +  + +L +  N        +F + 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 283 SNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEML 342
            NL  L ++ N  S   +  F  L +L RL L +N +          L  L        L
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL------MTL 206

Query: 343 YLNTNKFGGVFLRSIANLSAKITVIGMGDN 372
           YL  N    +   ++A L   +  + + DN
Sbjct: 207 YLFANNLSALPTEALAPLR-ALQYLRLNDN 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.7 bits (220), Expect = 7e-19
 Identities = 57/234 (24%), Positives = 91/234 (38%), Gaps = 10/234 (4%)

Query: 337 SQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEY 395
           S    L L  N    +   +  +L   + V+ +G N I   I       L ++N   +  
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 396 NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG-FNNLQGNVPSSL 454
           N LT     A   L  L+ L L  N +          +  L RL LG    L+     + 
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 455 GNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEY 514
               NL    + L+L    +   +P  +  L  L E ++S NHF    P +    ++L+ 
Sbjct: 193 EGLFNL----KYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

Query: 515 LHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
           L +  +  S     +   L S+ EL+L+ NNLS         L +L  L+L +N
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 57/282 (20%), Positives = 94/282 (33%), Gaps = 47/282 (16%)

Query: 269 NNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLD 328
              +  +P      SN + L++ +N+        F  L +L  L L +N++        +
Sbjct: 64  RGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120

Query: 329 FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVN 387
            L  L        L L                          DN ++  IPS   + L  
Sbjct: 121 GLASL------NTLELF-------------------------DNWLT-VIPSGAFEYLSK 148

Query: 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVR-NSLRGTIPDTLGNLTLLNRLFLGFNNL 446
           +    +  N +     +A   + +L  L L     L          L  L  L LG  N+
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 447 QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVT 505
           + ++P+ L     L      L++SGN     I       L +L +  +  +  S      
Sbjct: 209 K-DMPN-LTPLVGL----EELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 506 LSACTTLEYLHLQGNSFSGSLPLS-LKTLKSIKELDLSRNNL 546
                +L  L+L  N+ S SLP      L+ + EL L  N  
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 14/189 (7%)

Query: 396 NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG 455
             L+  +P  I    N + L L+ N+++    DT  +L  L  L LG N+++     +  
Sbjct: 64  RGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120

Query: 456 NCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEY 514
              +L TL    +L  N L   IP      L  L E  L  N   +      +   +L  
Sbjct: 121 GLASLNTL----ELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 515 LHLQGNSFSGSLPL-SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGE 573
           L L        +   + + L ++K L+L   N+   +P  L  L+ L  L +S NHF  E
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-E 232

Query: 574 VPRKGVFGN 582
           +   G F  
Sbjct: 233 IRP-GSFHG 240

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 17/250 (6%)

Query: 201 RIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPN 260
            +P  +    +  YL++ ENN       +  ++  LE++ L  N     + +     + +
Sbjct: 68  EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 261 VNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID---FNRLSNLSRLFLSKN 317
           +N L +  N  T     +F   S L+ L +  N       I    FNR+ +L RL L + 
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE---SIPSYAFNRVPSLMRLDLGEL 181

Query: 318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT 377
                 +              ++ L L         + ++  L   +  + M  N     
Sbjct: 182 KKLEYISEGA-----FEGLFNLKYLNLGMCNI--KDMPNLTPLVG-LEELEMSGNHFPEI 233

Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN 437
            P     L ++    V  +Q++    +A   L +L  L L  N+L     D    L  L 
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

Query: 438 RLFLGFNNLQ 447
            L L  N   
Sbjct: 294 ELHLHHNPWN 303

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 56/297 (18%), Positives = 104/297 (35%), Gaps = 22/297 (7%)

Query: 234 SSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKN 293
               I    S     S+P  +      V  L +  N  T           NLQ L +  N
Sbjct: 31  DRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 294 HFSGQVKID---FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFG 350
             +    I+   F+ L +L  L LS N L   S+S    L+ LT       L L  N + 
Sbjct: 87  GIN---TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF------LNLLGNPYK 137

Query: 351 GVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGEL 409
            +   S+ +   K+ ++ +G+      I  +    L  +    ++ + L    P ++  +
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197

Query: 410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL--GNCQNLMTLSRL- 466
           +N+  L L        +   +   + +  L L   +L     S L  G   +L+      
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 467 -LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522
            + ++   L   +   +  +  L E + S N   +         T+L+ + L  N +
Sbjct: 258 NVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 46/256 (17%), Positives = 90/256 (35%), Gaps = 12/256 (4%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           L SI + L+  +  + + +N+I+    S+++  VN+ A  +  N +      +   L +L
Sbjct: 43  LNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
           + L L  N L          L+ L  L L  N  +    +SL    +L  L  L   + +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF--SHLTKLQILRVGNMD 160

Query: 473 LLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLK 531
                I  +    L  L E ++  +   +  P +L +   + +L L        L + + 
Sbjct: 161 TFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219

Query: 532 TLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGN 591
              S++ L+L   +L       L      + +            R     + +   ++  
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF-------RNVKITDESLFQVMKL 272

Query: 592 ERLCGGLEELHLPSCH 607
                GL EL      
Sbjct: 273 LNQISGLLELEFSRNQ 288

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 4e-16
 Identities = 45/286 (15%), Positives = 97/286 (33%), Gaps = 27/286 (9%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFS 223
           ++ +D+ +N++       +     L+A+ +++N +     DS   L SL +L +S N  S
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 224 CKLPLSI-WNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH-SFSN 281
             L  S    +SSL  ++L  N ++     ++  ++  +  L VG  +    +    F+ 
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 282 ASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEM 341
            + L+ L++  +            + N+S L L            +D  + +        
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE------C 226

Query: 342 LYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGT 401
           L L            ++                     + +          +    L   
Sbjct: 227 LELRDTDLDTFHFSELSTGET-----------------NSLIKKFTFRNVKITDESLF-Q 268

Query: 402 IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
           +   + ++  L  L   RN L+         LT L +++L  N   
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 38/240 (15%), Positives = 88/240 (36%), Gaps = 10/240 (4%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
             + L+ + +  N +     D  ++  +LE +D+S N L          L SL +L++  
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 220 NNFSCKLPLSI-WNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS 278
           N +      S+  +++ L+I+ + +      +       +  +  L +  ++     P S
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 279 FSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLT--LLTNC 336
             +  N+  L ++       ++I  +  S++  L L   +L T   S+L       L   
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 337 SQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI----KNLVNINAFG 392
                + +         +  + N  + +  +    NQ+  ++P  I     +L  I    
Sbjct: 254 FTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHT 310

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 13/127 (10%)

Query: 17  GRRKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTV 76
           G   H   S   L  E         +L   +       +  +G FG V+K +L      V
Sbjct: 2   GHHHHHHSSGVDLGTE---------NLYFQSMPLQLLEVKARGRFGCVWKAQLL--NEYV 50

Query: 77  AVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           AVK+    Q   +     E  +L  ++H N+++ I          VD   LI  + + GS
Sbjct: 51  AVKIFP-IQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL-WLITAFHEKGS 108

Query: 137 SEDWMHQ 143
             D++  
Sbjct: 109 LSDFLKA 115

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 55/261 (21%), Positives = 97/261 (37%), Gaps = 33/261 (12%)

Query: 306 LSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSA--K 363
           L+N  ++   K+N+    T          +   +  L           + +I  +     
Sbjct: 18  LANAIKIAAGKSNVTDTVT--------QADLDGITTLSAFGTG-----VTTIEGVQYLNN 64

Query: 364 ITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLR 423
           +  + + DNQI  T  + +KNL  I    +  N L       I  L++++ L L    + 
Sbjct: 65  LIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQIT 120

Query: 424 GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG 483
              P  L  L+ L  L+L  N +     S L    NL    + L +    +    PL   
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQIT--NISPLAGLTNL----QYLSIGNAQVSDLTPLA-- 170

Query: 484 NLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSR 543
           NL  L      +N  S+  P  L++   L  +HL+ N  S   PL+     ++  + L+ 
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

Query: 544 NNLSGQIPKYLENLLFLAYLN 564
             ++ Q   Y  NL+    + 
Sbjct: 227 QTITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 57/208 (27%), Positives = 82/208 (39%), Gaps = 20/208 (9%)

Query: 362 AKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNS 421
           A    I  G + ++ T+     +L  I         +T TI   +  L NL GL L  N 
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQ 74

Query: 422 LRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE 481
           +    P  L NLT +  L L  N L     S++   Q++    + LDL+   +    PL 
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSI----KTLDLTSTQITDVTPLA 126

Query: 482 VGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDL 541
              L NL    L  N  +N  P  L+  T L+YL +     S  L   L  L  +  L  
Sbjct: 127 --GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKA 180

Query: 542 SRNNLSGQIPKYLENLLFLAYLNLSYNH 569
             N +S   P  L +L  L  ++L  N 
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQ 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.5 bits (186), Expect = 4e-15
 Identities = 62/294 (21%), Positives = 115/294 (39%), Gaps = 37/294 (12%)

Query: 257 NIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLS 315
            + N   ++ G++N T ++    ++   +  L  +    +    I+    L+NL  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLS--AKITVIGMGDNQ 373
            N +     +DL  L  LT    +  L L+ N      L++++ ++    I  + +   Q
Sbjct: 72  DNQI-----TDLAPLKNLTK---ITELELSGNP-----LKNVSAIAGLQSIKTLDLTSTQ 118

Query: 374 ISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNL 433
           I+   P  +  L N+    ++ NQ+T   P  +  L NLQ L++    +    P  L NL
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANL 172

Query: 434 TLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL 493
           + L  L    N +     S L +  NL      + L  N +    PL   N  NL    L
Sbjct: 173 SKLTTLKADDNKISDI--SPLASLPNL----IEVHLKNNQISDVSPLA--NTSNLFIVTL 224

Query: 494 SENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547
           +    +N+     +         ++G S +   P ++    +    +L+ N  S
Sbjct: 225 TNQTITNQPVFYNNNLVVPNV--VKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 48/271 (17%), Positives = 98/271 (36%), Gaps = 32/271 (11%)

Query: 178 FPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE 237
           FPD     +    I    + +      +   L  +  LS      +    +    +++L 
Sbjct: 13  FPD--PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQ--YLNNLI 66

Query: 238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG 297
            + L  N+     PL    N+  +  L +  N        + +   +++ LD+     + 
Sbjct: 67  GLELKDNQITDLAPLK---NLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD 121

Query: 298 QVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI 357
                   LSNL  L+L  N +     +++  L  LTN   ++ L +   +     +  +
Sbjct: 122 V--TPLAGLSNLQVLYLDLNQI-----TNISPLAGLTN---LQYLSIGNAQ-----VSDL 166

Query: 358 ANLSA--KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGL 415
             L+   K+T +   DN+IS    S + +L N+    ++ NQ++   P  +    NL  +
Sbjct: 167 TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 416 ALVRNSLRGTIPDTLGNLTLLNRLFLGFNNL 446
            L   ++         NL + N +       
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 16/162 (9%)

Query: 408 ELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLL 467
            L N   +A  ++++  T   T  +L  +  L      +       +    NL      L
Sbjct: 17  ALANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNL----IGL 68

Query: 468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLP 527
           +L  N +    PL+  NL  + E +LS N   N     ++   +++ L L     +   P
Sbjct: 69  ELKDNQITDLAPLK--NLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP 124

Query: 528 LSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569
           L+   L +++ L L  N ++   P  L  L  L YL++    
Sbjct: 125 LA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ 162

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 13/174 (7%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           NL K+  +++  N L       IA   +++ +D+++  +       L  L +L  L +  
Sbjct: 83  NLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDL 138

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
           N  +   PL+   +++L+ +S+ + +     PL    N+  +  L    N  +  +    
Sbjct: 139 NQITNISPLA--GLTNLQYLSIGNAQVSDLTPLA---NLSKLTTLKADDNKIS-DIS-PL 191

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333
           ++  NL  + +  N  S          SNL  + L+   +  +     + L + 
Sbjct: 192 ASLPNLIEVHLKNNQIS--DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 14/162 (8%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
            L  ++ +D+   Q+    P  +A  S L+ + +  N +       L  L +L YLSI  
Sbjct: 105 GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGN 160

Query: 220 NNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSF 279
              S   PL+  N+S L  +    N+     PL    ++PN+  + +  N  +   P   
Sbjct: 161 AQVSDLTPLA--NLSKLTTLKADDNKISDISPLA---SLPNLIEVHLKNNQISDVSP--L 213

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT 321
           +N SNL ++ +     +          +NL    + K   G 
Sbjct: 214 ANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPNVVKGPSGA 252

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.8 bits (195), Expect = 5e-17
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 14/180 (7%)

Query: 369 MGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPD 428
           +G +  +    +++ +L  I    +    LTG     I    N++ L +         P 
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATNYNP- 83

Query: 429 TLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNL 488
            +  L+ L RL +   ++  +   +L    +L     LLD+S +    SI  ++  L  +
Sbjct: 84  -ISGLSNLERLRIMGKDVTSDKIPNLSGLTSL----TLLDISHSAHDDSILTKINTLPKV 138

Query: 489 AEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSG 548
              DLS N    +I   L     L+ L++Q +       +       + +L      + G
Sbjct: 139 NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 22/198 (11%), Positives = 62/198 (31%), Gaps = 25/198 (12%)

Query: 306 LSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSA--K 363
                   L +++    + + ++ LT +          L         +  +  +     
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYI---------TLANIN-----VTDLTGIEYAHN 67

Query: 364 ITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLR 423
           I  + + +   +    + I  L N+    +    +T      +  L +L  L +  ++  
Sbjct: 68  IKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 424 GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG 483
            +I   +  L  +N + L +N    ++   L     L    + L++  + +     +E  
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPEL----KSLNIQFDGVHDYRGIE-- 178

Query: 484 NLRNLAEFDLSENHFSNE 501
           +   L +          +
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 12/162 (7%)

Query: 408 ELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLL 467
             K      L ++S        + +LT +    +   +L G     +    N+    + L
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNI----KDL 71

Query: 468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLP 527
            ++        P+    L NL    +     +++    LS  T+L  L +  ++   S+ 
Sbjct: 72  TINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 528 LSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569
             + TL  +  +DLS N     I   L+ L  L  LN+ ++ 
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 13/144 (9%)

Query: 425 TIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGN 484
            IPD+           LG ++      + + +   +        L+   +     +E   
Sbjct: 16  NIPDS--TFKAYLNGLLGQSSTANITEAQMNSLTYI-------TLANINVTDLTGIE--Y 64

Query: 485 LRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN 544
             N+ +  ++  H +N  P  +S  + LE L + G   +     +L  L S+  LD+S +
Sbjct: 65  AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 545 NLSGQIPKYLENLLFLAYLNLSYN 568
                I   +  L  +  ++LSYN
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 33/212 (15%), Positives = 79/212 (37%), Gaps = 20/212 (9%)

Query: 165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC 224
           E   +  +Q     PD  + F A     +  +        +  Q+ SL Y++++  N + 
Sbjct: 4   EQTGLKASQDNVNIPD--STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD 58

Query: 225 KLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASN 284
              +      +++ +++++       P++    + N+  L +   + T     + S  ++
Sbjct: 59  LTGIE--YAHNIKDLTINNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSGLTS 113

Query: 285 LQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYL 344
           L +LD+  +     +    N L  ++ + LS N       +D+  L  L     ++ L +
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA----ITDIMPLKTLPE---LKSLNI 166

Query: 345 NTNKFGGVFLRSIANLSAKITVIGMGDNQISG 376
             +       R I +   K+  +      I G
Sbjct: 167 QFDGVHD--YRGIEDFP-KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 22/169 (13%), Positives = 58/169 (34%), Gaps = 12/169 (7%)

Query: 156 IQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPD--SLCQLRSLN 213
           I    +  L  I + +  +       I     ++ + I+         +   +  L +L 
Sbjct: 38  ITEAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNI----HATNYNPISGLSNLE 91

Query: 214 YLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTG 273
            L I   + +     ++  ++SL ++ +  +  + S+   I   +P VN + +  N    
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT 150

Query: 274 SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTE 322
            +         L+ L++  +               L++L+     +G +
Sbjct: 151 DIM-PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 6e-17
 Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 10/171 (5%)

Query: 411 NLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN-VPSSLGNCQNLMTLS-RLLD 468
            LQ L L    + GT P  L   T  +   L   N+      + L   Q  +    ++L 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 469 LSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSAC-------TTLEYLHLQGNS 521
           ++          +V     L+  DLS+N    E  +  + C         L   +    +
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 522 FSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF-LAYLNLSYNHFE 571
            SG           ++ LDLS N+L         +    L  LNLS+   +
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 3e-16
 Identities = 49/315 (15%), Positives = 91/315 (28%), Gaps = 32/315 (10%)

Query: 270 NFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDF 329
           NF+   P   S  + L   DV           +           L + +   +     D 
Sbjct: 16  NFSDPKPDWSSAFNCLGAADV-----------ELYGGGRSLEYLLKRVDTEADLGQFTDI 64

Query: 330 LTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSA--KITVIGMGDNQISGTIPSEIKNLVN 387
           +  L+    ++ L +   +     L     +     +  + + + +++GT P  +     
Sbjct: 65  IKSLS----LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120

Query: 388 INAFGVEYNQLTGTIPHAI------GELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFL 441
            +   +    ++     A            L+ L++ +        + +     L+ L L
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180

Query: 442 GFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL---LGGSIPLEVGNLRNLAEFDLSENHF 498
             N   G        C       ++L L         G           L   DLS N  
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 499 SNEIPVTL-SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL 557
            +          + L  L+L        +P  L     +  LDLS N L    P   + L
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPS-PDEL 295

Query: 558 LFLAYLNLSYNHFEG 572
             +  L+L  N F  
Sbjct: 296 PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 4e-12
 Identities = 43/302 (14%), Positives = 80/302 (26%), Gaps = 39/302 (12%)

Query: 256 FNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLS 315
           F+ P  ++ S         +       S   +L             D  +  +L RL + 
Sbjct: 17  FSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVR 76

Query: 316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAK-ITVIGMGDNQI 374
              +    +  L     +   S ++ L L   +  G     +   +   + ++ + +   
Sbjct: 77  AARI---PSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 375 SG--TIPSEIKNLV--NINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTI---- 426
           +      +E++  +   +    +            +     L  L L  N   G      
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 427 ---PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV- 482
              P     L +L     G     G   +       L    + LDLS N L  +      
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL----QGLDLSHNSLRDAAGAPSC 249

Query: 483 GNLRNLAEFDLSENHFS---NEIPVTL----------------SACTTLEYLHLQGNSFS 523
                L   +LS          +P  L                     +  L L+GN F 
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309

Query: 524 GS 525
            S
Sbjct: 310 DS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 30/174 (17%), Positives = 56/174 (32%), Gaps = 12/174 (6%)

Query: 153 LGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP--DSLC--Q 208
           L  +Q+     L+++ +     +    + +  F AL  +D+S N   G      +LC  +
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 209 LRSLNYLSISENNFSC---KLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLS 265
             +L  L++                     L+ + L  N    +           +N L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 266 VGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL 319
           +        +P      + L VLD+  N        D   L  +  L L  N  
Sbjct: 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 19/230 (8%)

Query: 205 SLCQLRSLNYLSISENNFSCKLPLSI--WNISSLEIISLHSNRFEG---SLPLNIGFNIP 259
            +  +  L  L++     +   P  +       L I++L +  +      L     +  P
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 260 NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID----FNRLSNLSRLFLS 315
            +  LS+ Q +              L  LD+  N   G+  +       +   L  L L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQIS 375
              +    T       L     Q++ L L+ N           +  +++  + +    + 
Sbjct: 210 NAGM---ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 376 GTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG 424
             +P  +   L  ++   + YN+L    P +  EL  +  L+L  N    
Sbjct: 267 -QVPKGLPAKLSVLD---LSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 70/424 (16%), Positives = 136/424 (32%), Gaps = 25/424 (5%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLC--QLRSLNYLSI 217
               LE +DV  N+L           ++L  +D+S N     +P       L  L +L +
Sbjct: 98  FNQDLEYLDVSHNRL-QNISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGL 153

Query: 218 SENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH 277
           S   F  +L L       L  I L    +           IPN   L +  +  +     
Sbjct: 154 SAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212

Query: 278 SFSNASNLQVLDVYKNHFSGQVKIDFNRLS-----NLSRLFLSKNNLGTESTSDLDFLTL 332
              + + L  L +     + +                + L ++  ++ T     +     
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 333 LTNCSQMEMLYLNTNKFGGVFLRSIANLS----AKITVIGMGDNQISGTIPSEIKNLVNI 388
                 +E L +          R     S      + +  + +     +  +       +
Sbjct: 273 F-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 389 NAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG 448
           N   +  +              +   L   +N    ++      L  L  L L  N L+ 
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK- 390

Query: 449 NVPSSLGNCQNLMTLSRLLDLSGNLLG-GSIPLEVGNLRNLAEFDLSENHFSNEIPVTLS 507
           N        +N+ +L   LD+S N L   +         ++   +LS N  +  +   L 
Sbjct: 391 NFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449

Query: 508 ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPK-YLENLLFLAYLNLS 566
               ++ L L  N    S+P  +  L++++EL+++ N L   +P    + L  L Y+ L 
Sbjct: 450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLH 505

Query: 567 YNHF 570
            N +
Sbjct: 506 DNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 6e-16
 Identities = 63/400 (15%), Positives = 134/400 (33%), Gaps = 38/400 (9%)

Query: 211 SLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNN 270
               LS+S+N+ S      I  +S L ++ L  NR   SL  ++     ++ +L V  N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 271 FTGSLPHSFSNASNLQVLDVYKNHF-SGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDF 329
              ++       ++L+ LD+  N F    V  +F  L+ L+ L LS           +  
Sbjct: 112 LQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 330 LTLLTNCSQMEMLYLNTNKFGGVFLRSIANLS-----------------AKITVIGMGDN 372
           L L      +   ++   +   + + +   L                    +  + + + 
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 373 QISGTIPSEIKNLVNINAFGVEYNQLTGTIPH----------AIGELKNLQGLALVRNSL 422
           +++      +   ++    G     +T                    + ++ L +   ++
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 423 RGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNC-QNLMTLSRLLDLSGNLLGGSIPLE 481
              I       +      L   +++  V         ++     +  LS +       + 
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 482 VGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLP---LSLKTLKSIKE 538
             +  +    + ++N F++ +    S    L+ L LQ N    +     L  K + S++ 
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLET 407

Query: 539 LDLSRNNLSGQIPKYLENLLF-LAYLNLSYNHFEGEVPRK 577
           LD+S N+L+             +  LNLS N   G V R 
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 56/366 (15%), Positives = 107/366 (29%), Gaps = 35/366 (9%)

Query: 257 NIP-NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID---FNRLSNLSRL 312
           ++P     LS+ QN+ +       S  S L+VL +  N       +D   F    +L  L
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYL 105

Query: 313 FLSKNNLGTESTSDLDFLTLL----------------TNCSQMEMLYLNTNKFGGVFLRS 356
            +S N L   S   +  L  L                 N +++  L L+  KF  + L  
Sbjct: 106 DVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 357 IANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLA 416
           +A+L     ++ +    I G     ++   N     + ++  +         +  L  L 
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 417 LVRNSLRGTIPDTLGNLT-------LLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL--- 466
           L    L       L            L  + L            L        +  L   
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 467 -LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGS 525
            L ++  +           L++L    +    F        S    +    L  +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 526 LPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTG 585
             +   +  S   L+ ++N  +  + +    L  L  L L  N  +       +  N + 
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404

Query: 586 IHLIGN 591
           +  +  
Sbjct: 405 LETLDV 410

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.7 bits (173), Expect = 6e-13
 Identities = 51/303 (16%), Positives = 105/303 (34%), Gaps = 27/303 (8%)

Query: 156 IQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPD--SLCQLRSLN 213
           +  L L  +++ D    +L+    +     + L                       R + 
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 214 YLSISENNFSCKLPLSIWNIS-----SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQ 268
           YL+I     + ++    +  S     SL I  + +  F       +      +N   +  
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSI 338

Query: 269 NNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL-----GTES 323
           ++          + S+   L+  +N F+  V    + L  L  L L +N L         
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398

Query: 324 TSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIK 383
           T ++  L  L          LN++ +           +  I V+ +  N ++G++   + 
Sbjct: 399 TKNMSSLETLDVSLNS----LNSHAYDRTC-----AWAESILVLNLSSNMLTGSVFRCL- 448

Query: 384 NLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPD-TLGNLTLLNRLFLG 442
               +    +  N++  +IP  +  L+ LQ L +  N L+ ++PD     LT L  ++L 
Sbjct: 449 -PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505

Query: 443 FNN 445
            N 
Sbjct: 506 DNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 42/346 (12%), Positives = 104/346 (30%), Gaps = 30/346 (8%)

Query: 142 HQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGR 201
              +  ++ G    +Q  N   L ++   ++    +    +     L+  +I  N    +
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 202 IPDSL-------CQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNI 254
              +          L ++    I             +    +E +++++      +    
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 255 GFN----IPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLS 310
                  + ++    V    F  S    +S  + + +  +  +       +     S+ +
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356

Query: 311 RLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMG 370
            L  ++N            L  L        L L  N         +A ++  ++ +   
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQ------TLILQRNGL--KNFFKVALMTKNMSSLETL 408

Query: 371 DNQISGTIPSEIKNLV----NINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTI 426
           D  ++               +I    +  N LTG++   +     ++ L L  N +  +I
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SI 465

Query: 427 PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
           P  + +L  L  L +  N L+           +L    + + L  N
Sbjct: 466 PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL----QYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 34/246 (13%), Positives = 83/246 (33%), Gaps = 32/246 (13%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAI-GELKN 411
           L  +  +L  +   + +  N IS     +I  L  +    + +N++  ++   +    ++
Sbjct: 43  LTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101

Query: 412 LQGLALVRNSLRGTIPDTLGNLTLLN----------------------RLFLGFNNLQGN 449
           L+ L +  N L+      + +L  L+                       L L     +  
Sbjct: 102 LEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ- 160

Query: 450 VPSSLGNCQNLMTLSRLLDLSGNLLGGSIP--LEVGNLRNLAEFDLSENHFSNEIPVTLS 507
               L    +L     LLDL    + G     L++ N   L       + FS ++ ++++
Sbjct: 161 --LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 508 ACTTLE--YLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNL 565
           A   L+   + L   +    +    +  +    L+++  ++       ++   F     +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 566 SYNHFE 571
            Y +  
Sbjct: 279 EYLNIY 284

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.0 bits (198), Expect = 4e-16
 Identities = 58/325 (17%), Positives = 99/325 (30%), Gaps = 39/325 (12%)

Query: 283 SNLQVLDVYKNHFSGQ-VKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEM 341
            ++Q LD+     S          L     + L    L      D+     L     +  
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA--LRVNPALAE 60

Query: 342 LYLNTNKFGGVFLRSIA----NLSAKITVIGMGDNQISGT----IPSEIKNLVNINAFGV 393
           L L +N+ G V +  +       S KI  + + +  ++G     + S ++ L  +    +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 394 EYNQLTGTIPHAIGEL-----KNLQGLALVRNSLRGT----IPDTLGNLTLLNRLFLGFN 444
             N L       + E        L+ L L   SL       +   L        L +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 445 NLQGNVPSSLGNCQNLMTLS-RLLDLSGNLLG----GSIPLEVGNLRNLAEFDLSENHFS 499
           ++       L             L L    +       +   V +  +L E  L  N   
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 500 NE-----IPVTLSACTTLEYLHLQGNSFS----GSLPLSLKTLKSIKELDLSRNNLSGQI 550
           +       P  L   + L  L +     +    G L   L+  +S+KEL L+ N L  + 
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 551 PKYLENLLF-----LAYLNLSYNHF 570
            + L   L      L  L +    F
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 74/441 (16%), Positives = 137/441 (31%), Gaps = 58/441 (13%)

Query: 188 LEAIDISANMLGGRIPDSLCQ-LRSLNYLSISENNFS---CK-LPLSIWNISSLEIISLH 242
           ++++DI    L       L   L+    + + +   +   CK +  ++    +L  ++L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 243 SNRF--EGSLPLNIGFNIPNVN--FLSVGQNNFT----GSLPHSFSNASNLQVLDVYKNH 294
           SN     G   +  G   P+     LS+     T    G L  +      LQ L +  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 295 FSGQ-VKIDFNRL----SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKF 349
                +++    L      L +L L   +L   S   L   ++L      + L ++ N  
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL--ASVLRAKPDFKELTVSNNDI 182

Query: 350 GGVFLRSIA----NLSAKITVIGMGDNQIS----GTIPSEIKNLVNINAFGVEYNQLTGT 401
               +R +     +   ++  + +    ++      +   + +  ++    +  N+L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 402 IPHAIGE-----LKNLQGLALVRNSLR----GTIPDTLGNLTLLNRLFLGFNNLQGNVPS 452
               +          L+ L +    +     G +   L     L  L L  N L      
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 453 SLGN--CQNLMTLSRLLDLSGNLLGG----SIPLEVGNLRNLAEFDLSENHFSNEIPVTL 506
            L     +    L  L  +                +   R L E  +S N   +     L
Sbjct: 303 LLCETLLEPGCQLESL-WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 507 SA-----CTTLEYLHLQGNSFS----GSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL 557
                   + L  L L     S     SL  +L    S++ELDLS N L       L   
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421

Query: 558 L-----FLAYLNLSYNHFEGE 573
           +      L  L L   ++  E
Sbjct: 422 VRQPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 75/455 (16%), Positives = 157/455 (34%), Gaps = 76/455 (16%)

Query: 153 LGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQL--- 209
           L L+Q+  +++L+   + + +        +    AL  +++ +N LG      + Q    
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCK-DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82

Query: 210 --RSLNYLSISENNFSCK----LPLSIWNISSLEIISLHSNRF--EGSLPLNIGFNIPN- 260
               +  LS+     +      L  ++  + +L+ + L  N     G   L  G   P  
Sbjct: 83  PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142

Query: 261 -VNFLSVGQNNFT----GSLPHSFSNASNLQVLDVYKNHFSGQV-----KIDFNRLSNLS 310
            +  L +   + +      L        + + L V  N  +        +   +    L 
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 311 RLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA----NLSAKITV 366
            L L    + +++  DL    ++ + + +  L L +NK G V +  +     + S+++  
Sbjct: 203 ALKLESCGVTSDNCRDLC--GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGT- 425
           + + +  I+                G         +   +   ++L+ L+L  N L    
Sbjct: 261 LWIWECGITAK--------------GCGD------LCRVLRAKESLKELSLAGNELGDEG 300

Query: 426 ---IPDTLGN-LTLLNRLFLGFNNLQG----NVPSSLGNCQNLMTLSRLLDLSGNLLG-- 475
              + +TL      L  L++   +       +  S L   + L+ L     +S N L   
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL----QISNNRLEDA 356

Query: 476 GSIPLEVG---NLRNLAEFDLSENHFSNE----IPVTLSACTTLEYLHLQGNSFSGS--- 525
           G   L  G       L    L++   S+     +  TL A  +L  L L  N    +   
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 416

Query: 526 -LPLSLKTLKS-IKELDLSRNNLSGQIPKYLENLL 558
            L  S++     +++L L     S ++   L+ L 
Sbjct: 417 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 451

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 22/135 (16%)

Query: 486 RNLAEFDLSENHFSNE-IPVTLSACTTLEYLHLQGNSFS----GSLPLSLKTLKSIKELD 540
            ++   D+     S+      L      + + L     +      +  +L+   ++ EL+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 541 LSRNNLSGQIPKYLENLL-----FLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNE-RL 594
           L  N L       +   L      +  L+L      G            G  ++ +  R 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA-----------GCGVLSSTLRT 111

Query: 595 CGGLEELHLPSCHFG 609
              L+ELHL     G
Sbjct: 112 LPTLQELHLSDNLLG 126

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 14/102 (13%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA-------KSFVTECEALSNVRHRN 106
             IG+G FG V+KG+L +  + VA+K + L             + F  E   +SN+ H N
Sbjct: 25  KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPN 84

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
           ++K+  +  +          ++ E++ CG     +      +
Sbjct: 85  IVKLYGLMHNP-------PRMVMEFVPCGDLYHRLLDKAHPI 119

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 5e-15
 Identities = 52/230 (22%), Positives = 84/230 (36%), Gaps = 27/230 (11%)

Query: 342 LYLNTNKFGGVFLRSIANLS--AKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399
               +       ++ I      A+     +    ++  +      L +I+      + + 
Sbjct: 4   TITVSTP-----IKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQN 459
            ++   I  L N+  L L  N L    P  L NL  L  LFL  N +     SSL + + 
Sbjct: 57  -SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI--KDLSSLKDLKK 110

Query: 460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQG 519
           L    + L L  N +     L   +L  L    L  N  ++     LS  T L+ L L+ 
Sbjct: 111 L----KSLSLEHNGISDINGLV--HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLED 162

Query: 520 NSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569
           N  S  +   L  L  ++ L LS+N++S    + L  L  L  L L    
Sbjct: 163 NQIS-DIV-PLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQE 208

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 2e-14
 Identities = 48/283 (16%), Positives = 91/283 (32%), Gaps = 30/283 (10%)

Query: 232 NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVY 291
             +     +L       ++  N    + +++ +    ++   S+        N+  L + 
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLN 73

Query: 292 KNHFSGQVKID-FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFG 350
            N  +    I     L NL  LFL +N +      DL  L  L     ++ L L  N   
Sbjct: 74  GNKLT---DIKPLTNLKNLGWLFLDENKI-----KDLSSLKDLKK---LKSLSLEHNG-- 120

Query: 351 GVFLRSIANLS--AKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGE 408
              +  I  L    ++  + +G+N+I  T  + +  L  ++   +E NQ++  I   +  
Sbjct: 121 ---ISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAG 173

Query: 409 LKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLD 468
           L  LQ L L +N +  +    L  L  L+ L L          +   N     T+     
Sbjct: 174 LTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 469 LSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTT 511
                   S   +              N  S      ++    
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKA 274

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 5e-14
 Identities = 58/301 (19%), Positives = 103/301 (34%), Gaps = 30/301 (9%)

Query: 206 LCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLS 265
                     ++ + + +  +  +   ++S++ I  +++  +    +     +PNV  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLF 71

Query: 266 VGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLGTEST 324
           +  N  T   P   +N  NL  L + +N       +     L  L  L L  N +     
Sbjct: 72  LNGNKLTDIKP--LTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGI----- 121

Query: 325 SDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSA--KITVIGMGDNQISGTIPSEI 382
           SD++ L    +  Q+E LYL  NK     +  I  LS   K+  + + DNQIS  I   +
Sbjct: 122 SDINGLV---HLPQLESLYLGNNK-----ITDITVLSRLTKLDTLSLEDNQIS-DI-VPL 171

Query: 383 KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442
             L  +    +  N ++      +  LKNL  L L          +   NL + N +   
Sbjct: 172 AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEI 502
             +L      S         +   L    N +       V   +  A F         E+
Sbjct: 230 DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEV 289

Query: 503 P 503
            
Sbjct: 290 Y 290

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 6e-14
 Identities = 50/277 (18%), Positives = 106/277 (38%), Gaps = 35/277 (12%)

Query: 257 NIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLS 315
                   ++ + + T ++    +  +++  +    +       +     L N+++LFL+
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 73

Query: 316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSA--KITVIGMGDNQ 373
            N L     +D+  LT L N   +  L+L+ NK     ++ +++L    K+  + +  N 
Sbjct: 74  GNKL-----TDIKPLTNLKN---LGWLFLDENK-----IKDLSSLKDLKKLKSLSLEHNG 120

Query: 374 ISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNL 433
           IS  I   + +L  + +  +  N++T      +  L  L  L+L  N +   I   L  L
Sbjct: 121 IS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGL 174

Query: 434 TLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL 493
           T L  L+L  N++      +L   +NL     +L+L              NL        
Sbjct: 175 TKLQNLYLSKNHIS--DLRALAGLKNL----DVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 494 SENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSL 530
           ++       P  +S     E  +++ +    +  +S 
Sbjct: 229 TDGSLVT--PEIISDDGDYEKPNVKWHLPEFTNEVSF 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 5e-10
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 27/233 (11%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPD--SLCQLRSLNYLSI 217
            L  ++ I   ++  I      I     +  + ++ N    ++ D   L  L++L +L +
Sbjct: 41  ELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFL 94

Query: 218 SENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH 277
            EN       L   ++  L+ +SL  N       L    ++P +  L +G N  T     
Sbjct: 95  DENKIKDLSSLK--DLKKLKSLSLEHNGISDINGLV---HLPQLESLYLGNNKITD--IT 147

Query: 278 SFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNC 336
             S  + L  L +  N  S    I     L+ L  L+LSKN++     SDL  L  L N 
Sbjct: 148 VLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHI-----SDLRALAGLKN- 198

Query: 337 SQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNIN 389
             +++L L + +     +   +NL    TV     + ++  I S+  +    N
Sbjct: 199 --LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 8e-09
 Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 28/260 (10%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPD--SLCQLRSLNYLSI 217
            L  +  + +  N+L    P  + N   L  + +  N    +I D  SL  L+ L  LS+
Sbjct: 63  YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSL 116

Query: 218 SENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH 277
             N  S  +   + ++  LE + L +N+      L+    +  ++ LS+  N  +  +  
Sbjct: 117 EHNGIS-DIN-GLVHLPQLESLYLGNNKITDITVLS---RLTKLDTLSLEDNQIS-DIV- 169

Query: 278 SFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNC 336
             +  + LQ L + KNH S    +     L NL  L L       +  +    L +    
Sbjct: 170 PLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT- 225

Query: 337 SQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDN---QISGTIPSEIKNLVNINAFGV 393
                +           + S      K  V         ++S      +        F  
Sbjct: 226 -----VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

Query: 394 EYNQLTGTIPHAIGELKNLQ 413
              Q    +     ++    
Sbjct: 281 RVTQPLKEVYTVSYDVDGTV 300

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 51/238 (21%), Positives = 87/238 (36%), Gaps = 25/238 (10%)

Query: 333 LTNCSQMEMLYLNTNKFGGVFLRSIANLS--AKITVIGMGDNQISGTIPSEIKNLVNINA 390
               ++     L         +      +    I  I   ++ I  ++   I+ L N+  
Sbjct: 20  DDAFAETIKDNLKKKS-----VTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTK 72

Query: 391 FGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNV 450
             +  N+LT   P  +  LKNL  L L  N ++      L +L  L  L L  N +  + 
Sbjct: 73  LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI--SD 126

Query: 451 PSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT 510
            + L +   L      L L  N +     L    L  L    L +N  S+ +P  L+  T
Sbjct: 127 INGLVHLPQL----ESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLT 178

Query: 511 TLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
            L+ L+L  N  S  L  +L  LK++  L+L       +   +  NL+    +  +  
Sbjct: 179 KLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 47/266 (17%), Positives = 96/266 (36%), Gaps = 33/266 (12%)

Query: 305 RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSA-- 362
             +   +  L K ++    T            + ++ +  N +      ++S+  +    
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--------QNELNSIDQIIANNSD-----IKSVQGIQYLP 68

Query: 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSL 422
            +T + +  N+++      + NL N+    ++ N++       + +LK L+ L+L  N +
Sbjct: 69  NVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI 124

Query: 423 RGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV 482
              I   L +L  L  L+LG N +     + L     L      L L  N +   +PL  
Sbjct: 125 S-DING-LVHLPQLESLYLGNNKITD--ITVLSRLTKL----DTLSLEDNQISDIVPLA- 175

Query: 483 GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLS 542
             L  L    LS+NH S+     L+    L+ L L               L     +  +
Sbjct: 176 -GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 543 RNNLSGQIPKYLENLLFLAYLNLSYN 568
             +L    P+ + +       N+ ++
Sbjct: 233 DGSLVT--PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 51/244 (20%), Positives = 91/244 (37%), Gaps = 30/244 (12%)

Query: 206 LCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLS 265
                     ++ + + +  +  +   ++S++ I  +++  +    +     +PNV  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLF 74

Query: 266 VGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLGTEST 324
           +  N  T   P   +N  NL  L + +N       +     L  L  L L  N +     
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGI----- 124

Query: 325 SDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSA--KITVIGMGDNQISGTIPSEI 382
           SD++ L  L     +E LYL  NK     +  I  LS   K+  + + DNQIS  I   +
Sbjct: 125 SDINGLVHLPQ---LESLYLGNNK-----ITDITVLSRLTKLDTLSLEDNQIS-DI-VPL 174

Query: 383 KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442
             L  +    +  N ++      +  LKNL  L L          +   NL + N +   
Sbjct: 175 AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 443 FNNL 446
             +L
Sbjct: 233 DGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 18/190 (9%)

Query: 380 SEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRL 439
                        ++   +T  +     EL ++  +    + ++ ++   +  L  + +L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 73

Query: 440 FLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499
           FL  N L     + +    NL  L   L L  N +     L+  +L+ L    L  N  S
Sbjct: 74  FLNGNKL-----TDIKPLANLKNL-GWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS 125

Query: 500 NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559
           +     L     LE L+L  N  +    LS   L  +  L L  N +S  +P  L  L  
Sbjct: 126 DING--LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTK 179

Query: 560 LAYLNLSYNH 569
           L  L LS NH
Sbjct: 180 LQNLYLSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 30/245 (12%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPD--SLCQLRSLNYLSI 217
            L  ++ I   ++ +  K    I     +  + ++ N    ++ D   L  L++L +L +
Sbjct: 44  ELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFL 97

Query: 218 SENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH 277
            EN       L   ++  L+ +SL  N       L    ++P +  L +G N  T     
Sbjct: 98  DENKVKDLSSLK--DLKKLKSLSLEHNGISDINGLV---HLPQLESLYLGNNKITD--IT 150

Query: 278 SFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNC 336
             S  + L  L +  N  S    I     L+ L  L+LSKN++     SDL  L  L N 
Sbjct: 151 VLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHI-----SDLRALAGLKN- 201

Query: 337 SQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYN 396
             +++L L + +     +   +NL    TV    +   S   P  I +  +     V+++
Sbjct: 202 --LDVLELFSQECLNKPINHQSNLVVPNTVK---NTDGSLVTPEIISDDGDYEKPNVKWH 256

Query: 397 QLTGT 401
               T
Sbjct: 257 LPEFT 261

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 22/118 (18%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITV 113
            ++G+G+FG V K K       VA+K   ++ +   K+F+ E   LS V H N++K    
Sbjct: 14  EVVGRGAFGVVCKAKW--RAKDVAIKQ--IESESERKAFIVELRQLSRVNHPNIVK---- 65

Query: 114 CSSIDFKGVDFKAL--IYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDV 169
                  G     +  + EY + GS  + +H +              ++      +  
Sbjct: 66  -----LYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPY---YTAAHAMSW----CLQC 111

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 9/111 (8%)

Query: 54  NMIGQGSFGFVYKGKL---GETGTTVAVKVMNLKQKGAAKS----FVTECEALSNVRHRN 106
            ++G+G FG V +G L     T   VAVK   +K   +++     F++E   + +  H N
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTSLKVAVKT--MKLDNSSQREIEEFLSEAACMKDFSHPN 97

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQ 157
           +I+++ VC  +  +G+    +I  +MK G    ++  S  +    ++ L  
Sbjct: 98  VIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQT 148

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 12/108 (11%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA--KSFVTECEALSNVRHRNLIKIITV 113
           IG GSFG V++ +    G+ VAVK++  +   A     F+ E   +  +RH N++  +  
Sbjct: 45  IGAGSFGTVHRAEWH--GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGA 102

Query: 114 CSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNL 161
            +    +  +  +++ EY+  GS    +H+S  + +   L   +RL++
Sbjct: 103 VT----QPPNL-SIVTEYLSRGSLYRLLHKSGAREQ---LDERRRLSM 142

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.4 bits (182), Expect = 4e-14
 Identities = 51/337 (15%), Positives = 97/337 (28%), Gaps = 17/337 (5%)

Query: 208 QLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVG 267
            +    ++S  E   S      +   S +  + L  +    S+           + + + 
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 268 QNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDL 327
                        +   +             +K         S                 
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST 362

Query: 328 DFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVN 387
              + L +C +++ L           L +I  L   +  +      +      +  + + 
Sbjct: 363 VLQSELESCKELQELEPENK----WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418

Query: 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
                   ++          E  +++ L L    L  T+   L  L L+  L L  N L+
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR 476

Query: 448 GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSN-EIPVTL 506
             +P +L   + L     +L  S N L  ++   V NL  L E  L  N          L
Sbjct: 477 -ALPPALAALRCL----EVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPL 529

Query: 507 SACTTLEYLHLQGNSFSGSLPLSLK---TLKSIKELD 540
            +C  L  L+LQGNS      +  +    L S+  + 
Sbjct: 530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 6e-08
 Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 13/193 (6%)

Query: 379 PSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNR 438
             +      +    +   + T  +   +   K LQ L         TI   +  L  L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 439 LFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHF 498
                        S+L     +         S  L      +      ++    L+    
Sbjct: 401 EKETLQYF-----STLKAVDPMRAAYLDDLRSKFL--LENSVLKMEYADVRVLHLAHKDL 453

Query: 499 SNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558
           +  +   L     + +L L  N    +LP +L  L+ ++ L  S N L   +   + NL 
Sbjct: 454 T-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLP 508

Query: 559 FLAYLNLSYNHFE 571
            L  L L  N  +
Sbjct: 509 RLQELLLCNNRLQ 521

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 56  IGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V   +       TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108

Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
            VC S   + +    LI EY+  GS  D++ +  ++++   L
Sbjct: 109 GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERIDHIKL 147

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 56  IGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+FG V   +       TG  VAVK +    +   + F  E E L +++H N++K  
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77

Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
            VC S   + +    LI EY+  GS  D++ +  ++++   L
Sbjct: 78  GVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERIDHIKL 116

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 71.1 bits (175), Expect = 9e-14
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA--KSFVTECEALSNVRHRNLIKII 111
             + +   G ++KG+    G  + VKV+ ++       + F  EC  L    H N++ ++
Sbjct: 16  TKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVL 73

Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
             C S          LI  +M  GS  + +H+  + 
Sbjct: 74  GACQS---PPAPHPTLITHWMPYGSLYNVLHEGTNF 106

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 25/224 (11%)

Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN 437
           +P   KNL       + +N L     ++      LQ L L R  ++        +L+ L+
Sbjct: 26  LPFSTKNLD------LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 438 RLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSEN 496
            L L  N +Q     +     +L    + L      L  S+     G+L+ L E +++ N
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSL----QKLVAVETNL-ASLENFPIGHLKTLKELNVAHN 134

Query: 497 HFSN-EIPVTLSACTTLEYLHLQGNSFSGSLPL----SLKTLKSIK-ELDLSRNNLSGQI 550
              + ++P   S  T LE+L L  N    S+       L  +  +   LDLS N ++  I
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 551 PKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTG---IHLIGN 591
                  + L  L L  N  +  VP  G+F   T    I L  N
Sbjct: 193 QPGAFKEIRLKELALDTNQLK-SVPD-GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 56/269 (20%), Positives = 87/269 (32%), Gaps = 64/269 (23%)

Query: 257 NIP-NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID---FNRLSNLSRL 312
           N+P +   L +  N       +SF +   LQVLD+ +        I+   +  LS+LS L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTL 81

Query: 313 FLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDN 372
            L+ N + + +      L+ L        L           L S+               
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQK------LVAVETN-----LASLE-------------- 116

Query: 373 QISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG-TIPDTLG 431
                                            IG LK L+ L +  N ++   +P+   
Sbjct: 117 ------------------------------NFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 432 NLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEF 491
           NLT L  L L  N +Q    + L     +  L+  LDLS N +   I         L E 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKEL 205

Query: 492 DLSENHFSNEIPVTLSACTTLEYLHLQGN 520
            L  N   +         T+L+ + L  N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 11/183 (6%)

Query: 203 PDSLCQLRSLNYLSISENNFSCKLPLSI-WNISSLEIISLHSNRFEGSLPLNIGFNIPNV 261
             S      L  L +S       +      ++S L  + L  N  + SL L     + ++
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 102

Query: 262 NFLSVGQNNFTGSLPH-SFSNASNLQVLDVYKNHF-SGQVKIDFNRLSNLSRLFLSKNNL 319
             L   + N   SL +    +   L+ L+V  N   S ++   F+ L+NL  L LS N +
Sbjct: 103 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 320 GTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIP 379
            +   +DL  L  +        L L+ N    +   +   +  ++  + +  NQ+  ++P
Sbjct: 162 QSIYCTDLRVLHQMP--LLNLSLDLSLNPMNFIQPGAFKEI--RLKELALDTNQLK-SVP 216

Query: 380 SEI 382
             I
Sbjct: 217 DGI 219

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 56  IGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKG--AAKSFVTECEALSNVRHRNLIK 109
           +G+G+FG V   +       TG  VAVK   L+  G    + F  E + L  +    ++K
Sbjct: 31  LGKGNFGSVELCRYDPLGDNTGALVAVKQ--LQHSGPDQQRDFQREIQILKALHSDFIVK 88

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
              V      + +    L+ EY+  G   D++ +   +L+A  L
Sbjct: 89  YRGVSYGPGRQSL---RLVMEYLPSGCLRDFLQRHRARLDASRL 129

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 70.6 bits (173), Expect = 3e-13
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECE--ALSNVRHRNLIKII 111
             IG+G FG V++GK    G  VAVK+ + +++   +S+  E E      +RH N++  I
Sbjct: 48  ESIGKGRFGEVWRGKWR--GEEVAVKIFSSREE---RSWFREAEIYQTVMLRHENILGFI 102

Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
              +  +        L+ +Y + GS  D++++
Sbjct: 103 AADNKDNGTWTQL-WLVSDYHEHGSLFDYLNR 133

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G+G FG   K    ETG  + +K +    +   ++F+ E + +  + H N++K I V  
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77

Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLK 163
               K       I EY+K G+    +   + +         QR++  K
Sbjct: 78  ----KDKRL-NFITEYIKGGTLRGIIKSMDSQYP-----WSQRVSFAK 115

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLK----QKGAAKSFVTECEALSNVRHRNLIK 109
            +IG G FG VY+      G  VAVK              ++   E +  + ++H N+I 
Sbjct: 13  EIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIA 70

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMH 142
           +  VC     K  +   L+ E+ + G     + 
Sbjct: 71  LRGVCL----KEPNL-CLVMEFARGGPLNRVLS 98

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 11/221 (4%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIP-HAIGELKN 411
           +  I ++L      +     ++            ++    +  N +   I       L  
Sbjct: 21  VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 412 LQGLALVR-NSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLS 470
           L  + + + N+L    P+   NL  L  L +    ++ ++P    +  + +    LLD+ 
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD--VHKIHSLQK-VLLDIQ 136

Query: 471 GNLLGGSIPLEV--GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPL 528
            N+   +I      G         L++N          +     E      N+       
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196

Query: 529 SLKTLKSIKELDLSRNNLSGQIPKY-LENLLFLAYLNLSYN 568
                     LD+SR  +   +P Y LENL  L   +    
Sbjct: 197 VFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 51/293 (17%)

Query: 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH 294
           S  +     ++    +P ++     N   L             +FS   +L+ +++ +N 
Sbjct: 10  SNRVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 295 FSGQVKID-FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVF 353
               ++ D F+ L  L  + + K N       +        N   ++ L ++        
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-----AFQNLPNLQYLLISNTG----- 115

Query: 354 LRSIANL----SAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGEL 409
           ++ + ++    S +  ++ + DN    TI          N+F               G  
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIER--------NSFV--------------GLS 153

Query: 410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDL 469
                L L +N ++           L        NNL+             +     LD+
Sbjct: 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI----LDI 209

Query: 470 SGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS 521
           S   +  S+P     NL+ L            ++P TL     L    L   S
Sbjct: 210 SRTRI-HSLPSYGLENLKKLRARSTYNL---KKLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 15/195 (7%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFI-ANFSALEAIDIS-ANMLGGRIPDSLCQLRSLNYLSI 217
               LE I++  N ++      + +N   L  I I  AN L    P++   L +L YL I
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 218 SENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIP-NVNFLSVGQNNFTGSLP 276
           S         +   +     ++ +  N    ++  N    +      L + +N       
Sbjct: 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171

Query: 277 HSFSNASNLQVLDVYKNHFSGQVKID---FNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333
            +F+     ++     N+     ++    F+  S    L +S+  + +  +  L+ L  L
Sbjct: 172 SAFNGTQLDELNLSDNNNLE---ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228

Query: 334 TNCSQMEMLYLNTNK 348
                         K
Sbjct: 229 R------ARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 37/267 (13%), Positives = 76/267 (28%), Gaps = 46/267 (17%)

Query: 185 FSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSI-WNISSLEIISL-H 242
                 +      L      +      L  + IS+N+    +   +  N+  L  I +  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID 302
           +N     +                         P +F N  NLQ L +          + 
Sbjct: 89  ANNLL-YIN------------------------PEAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 303 FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA---- 358
                    L +  N     +     F+ L     +  +L+LN N      ++ I     
Sbjct: 124 KIHSLQKVLLDIQDNIN-IHTIERNSFVGL---SFESVILWLNKNG-----IQEIHNSAF 174

Query: 359 NLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLAL 417
           N +    +    +N +   +P+++           +   ++     + +  LK L+  + 
Sbjct: 175 NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 418 VRNSLRGTIPDTLGNLTLLNRLFLGFN 444
                   +P TL  L  L    L + 
Sbjct: 234 YNLK---KLP-TLEKLVALMEASLTYP 256

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECE--ALSNVRHRNLIKII 111
             +G+G +G V++G     G  VAVK+ + + +   KS+  E E      +RH N++  I
Sbjct: 14  ECVGKGRYGEVWRGSWQ--GENVAVKIFSSRDE---KSWFRETELYNTVMLRHENILGFI 68

Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
               +          LI  Y + GS  D++  
Sbjct: 69  ASDMTSRHSSTQL-WLITHYHEMGSLYDYLQL 99

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 54  NMIGQGSFGFVYKGKL---GETGTTVAVKVM--NLKQKGAAKSFVTECEALSNVRHRNLI 108
            M+G+G FG V + +L     +   VAVK++  ++      + F+ E   +    H ++ 
Sbjct: 29  RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVA 88

Query: 109 KIITVCSSIDFKGVDFKAL-IYEYMKCGS 136
           K++ V      KG     + I  +MK G 
Sbjct: 89  KLVGVSLRSRAKGRLPIPMVILPFMKHGD 117

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 57/305 (18%), Positives = 98/305 (32%), Gaps = 53/305 (17%)

Query: 306 LSNLS--RLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL--- 360
           ++  S     L  + + TE    +    +L     ++ + L+ N  G    R ++     
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSV--FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS 58

Query: 361 SAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRN 420
              + +    D                      E  +    +  A+ +   L  + L  N
Sbjct: 59  KKDLEIAEFSDIFT--------------GRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104

Query: 421 SLRGT----IPDTLGNLTLLNRLFLGFNNLQ-------GNVPSSLGNCQNLMTLSRL--L 467
           +   T    + D L   T L  L+L  N L              L   +       L  +
Sbjct: 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164

Query: 468 DLSGNLLG--GSIPL--EVGNLRNLAEFDLSENHFSNE-----IPVTLSACTTLEYLHLQ 518
               N L             + R L    + +N    E     +   L+ C  L+ L LQ
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 519 GNSFS--GSLPLS--LKTLKSIKELDLSRNNLSGQ----IPKYLENLLF--LAYLNLSYN 568
            N+F+  GS  L+  LK+  +++EL L+   LS +    +      L    L  L L YN
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284

Query: 569 HFEGE 573
             E +
Sbjct: 285 EIELD 289

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 47/291 (16%), Positives = 81/291 (27%), Gaps = 54/291 (18%)

Query: 307 SNLSRLFLSKNNLGTESTSDLD----FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL-- 360
            +L     S    G       +     L  L  C ++  + L+ N FG      + +   
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 361 -SAKITVIGMGDNQIS-------------GTIPSEIKNLVNINAFGVEYNQLTG----TI 402
               +  + + +N +                +  + KN   + +     N+L        
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 403 PHAIGELKNLQGLALVRNSLR-----GTIPDTLGNLTLLNRLFLGFNNL--QG--NVPSS 453
                  + L  + +V+N +R       + + L     L  L L  N     G   +  +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 454 LGNCQNLMTLSRLLDLSGNLLGG------SIPLEVGNLRNLAEFDLSENHFSNEIPVTLS 507
           L +  NL    R L L+  LL                   L    L  N    +   TL 
Sbjct: 240 LKSWPNL----RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 508 A-----CTTLEYLHLQGNSFS------GSLPLSLKTLKSIKELDLSRNNLS 547
                    L +L L GN FS        +     T    +  +L      
Sbjct: 296 TVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 55/224 (24%)

Query: 412 LQGLALVRNSLRG----TIPDTLGNLTLLNRLFLGFNNLQGN----VPSSLGNCQNLMTL 463
           ++G +L  +++      ++   L     +  + L  N +       +  ++ + ++L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL--- 62

Query: 464 SRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFS 523
             + + S    G         LR L +               L  C  L  + L  N+F 
Sbjct: 63  -EIAEFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFG 107

Query: 524 --GSLPLS--LKTLKSIKELDLSRNNLS-------------GQIPKYLENLLFLAYLNLS 566
                PL   L     ++ L L  N L                + K  +N   L  +   
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167

Query: 567 YNHFEGEVPRKGVFGNRTGIHLIGNE-RLCGGLEELHLPSCHFG 609
            N  E              +       +    L  + +      
Sbjct: 168 RNRLENG-----------SMKEWAKTFQSHRLLHTVKMVQNGIR 200

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 39/268 (14%), Positives = 70/268 (26%), Gaps = 64/268 (23%)

Query: 156 IQRLNLLKLEMIDVGDNQLIG--KFPDFIANFSALEAIDISANMLGGR----IPDSLCQL 209
           ++      +    V D            +     L  + +S N  G      + D L + 
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 210 RSLNYLSISENNFS-------------CKLPLSIWNISSLEIISLHSNRF--EGSLPLNI 254
             L +L +  N                  +     N   L  I    NR           
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 255 GF-NIPNVNFLSVGQNNFT-----GSLPHSFSNASNLQVLDVYKNHFSGQ---------- 298
            F +   ++ + + QN          L    +    L+VLD+  N F+            
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 299 -------VKIDFNRLSN-----------------LSRLFLSKNNLGTESTSDLDFLTLLT 334
                  + ++   LS                  L  L L  N +  ++   L    +  
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDE 300

Query: 335 NCSQMEMLYLNTNKFG--GVFLRSIANL 360
               +  L LN N+F      +  I  +
Sbjct: 301 KMPDLLFLELNGNRFSEEDDVVDEIREV 328

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 69.0 bits (169), Expect = 9e-13
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECE--ALSNVRHRNLIKII 111
             IG+G +G V+ GK    G  VAVKV    ++    S+  E E      +RH N++  I
Sbjct: 43  KQIGKGRYGEVWMGKWR--GEKVAVKVFFTTEE---ASWFRETEIYQTVLMRHENILGFI 97

Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
                          LI +Y + GS  D++  
Sbjct: 98  AADIKGTGSWTQL-YLITDYHENGSLYDYLKS 128

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 56  IGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGAAKS---FVTECEALSNVRHRNLI 108
           +G+G FG V   +       TG  VAVK   LK +           E E L N+ H N++
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKS--LKPESGGNHIADLKKEIEILRNLYHENIV 86

Query: 109 KIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           K   +C+     G+    LI E++  GS ++++ ++ +K+     
Sbjct: 87  KYKGICTEDGGNGI---KLIMEFLPSGSLKEYLPKNKNKINLKQQ 128

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG+G FG V  G     G  VAVK   +K    A++F+ E   ++ +RH NL++++ V  
Sbjct: 29  IGKGEFGDVMLGDY--RGNKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVIV 84

Query: 116 SIDFKGVDFKALIYEYMKCGS 136
               +      ++ EYM  GS
Sbjct: 85  ----EEKGGLYIVTEYMAKGS 101

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 13/97 (13%)

Query: 56  IGQGSFGFVYKGKL-GETGTTVAVKVMNLKQKGAA--KSFVTECEALSNVRHRNLIKIIT 112
           IG GSFG VYKGK  G+    VAVK++N+        ++F  E   L   RH N++  + 
Sbjct: 32  IGSGSFGTVYKGKWHGD----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 87

Query: 113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
             ++         A++ ++ +  S    +H S  K E
Sbjct: 88  YSTAPQL------AIVTQWCEGSSLYHHLHASETKFE 118

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 54  NMIGQGSFGFVYKGKL-GETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKI 110
            +IG+G FG VY G+  GE    VA++++++++  +   K+F  E  A    RH N++  
Sbjct: 39  ELIGKGRFGQVYHGRWHGE----VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLF 94

Query: 111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
           +  C           A+I    K  +    +  +   L+
Sbjct: 95  MGACM----SPPHL-AIITSLCKGRTLYSVVRDAKIVLD 128

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 27/219 (12%)

Query: 232 NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVY 291
            ++S   ++        +LP ++     +   L + +N        +    + L  L++ 
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 292 KNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKF-- 349
           +             L  L  L LS N L          L  LT       L ++ N+   
Sbjct: 64  RAEL--TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTV------LDVSFNRLTS 114

Query: 350 --GGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAI 406
              G   R +  L      + +  N++  T+P  +      +    +  N LT  +P  +
Sbjct: 115 LPLGAL-RGLGEL----QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167

Query: 407 -GELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFN 444
              L+NL  L L  NSL  TIP       LL   FL  N
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 47/215 (21%), Positives = 70/215 (32%), Gaps = 41/215 (19%)

Query: 283 SNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEML 342
            +  +L + +N             + L++L L +  L          L +L        L
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT------L 82

Query: 343 YLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTI 402
            L+                          NQ+  ++P   + L  +    V +N+LT ++
Sbjct: 83  DLS-------------------------HNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115

Query: 403 PHAI-GELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLM 461
           P      L  LQ L L  N L+   P  L     L +L L  NNL       L   +NL 
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 462 TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSEN 496
           T    L L  N L  +IP        L    L  N
Sbjct: 176 T----LLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 52/217 (23%), Positives = 75/217 (34%), Gaps = 45/217 (20%)

Query: 307 SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITV 366
            + + L LS+N L T S + L   T LT       L L+  +               +T 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQ------LNLDRAE---------------LTK 69

Query: 367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTI 426
           + +               L  +    + +NQL  ++P     L  L  L +  N L    
Sbjct: 70  LQVDGT------------LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 427 PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL--LDLSGNLLGGSIPLEV-G 483
              L  L  L  L+L  N L+  +P  L     L    +L  L L+ N L   +P  +  
Sbjct: 117 LGALRGLGELQELYLKGNELK-TLPPGL-----LTPTPKLEKLSLANNNL-TELPAGLLN 169

Query: 484 NLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGN 520
            L NL    L EN     IP        L +  L GN
Sbjct: 170 GLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 43/214 (20%), Positives = 63/214 (29%), Gaps = 44/214 (20%)

Query: 211 SLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNN 270
               L +SEN        ++   + L  ++L          L +   +P +  L +  N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHNQ 88

Query: 271 FTGSLPHSFSNASNLQVLDVYKNHFSGQVKID---FNRLSNLSRLFLSKNNLGTESTSDL 327
              SLP        L VLDV  N  +    +       L  L  L+L  N L T     L
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 328 DFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLV 386
                L        L L  N      L                       +P+ +   L 
Sbjct: 145 TPTPKLEK------LSLANNN-----LTE---------------------LPAGLLNGLE 172

Query: 387 NINAFGVEYNQLTGTIPHAIGELKNLQGLALVRN 420
           N++   ++ N L  TIP        L    L  N
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSG 524
            +L LS NLL       +     L + +L     + ++ V       L  L L  N    
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ- 90

Query: 525 SLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569
           SLPL  +TL ++  LD+S N L+      L  L  L  L L  N 
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 56  IGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGAAKS---FVTECEALSNVRHRNLI 108
           +G+G FG V           TG  VAVK   LK     +    +  E + L  + H ++I
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKA--LKADAGPQHRSGWKQEIDILRTLYHEHII 96

Query: 109 KIITVCSSIDFKGVDFKALIYEYMKCGS 136
           K    C       +    L+ EY+  GS
Sbjct: 97  KYKGCCEDAGAASL---QLVMEYVPLGS 121

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 13/114 (11%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G G+FG VYK K  ETG   A KV+  K +   + ++ E E L+   H  ++K      
Sbjct: 27  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK------ 80

Query: 116 SIDFKGVDFKA----LIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLE 165
                G  +      ++ E+   G+ +  M + +  L    + ++ R  L  L 
Sbjct: 81  ---LLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALN 131

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG+G FG V  G     G  VAVK   +K    A++F+ E   ++ +RH NL++++ V  
Sbjct: 201 IGKGEFGDVMLGDY--RGNKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVIV 256

Query: 116 SIDFKGVDFKALIYEYMKCGS 136
               +      ++ EYM  GS
Sbjct: 257 ----EEKGGLYIVTEYMAKGS 273

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 24/197 (12%)

Query: 257 NIP-NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID---FNRLSNLSRL 312
           NIP +   L +  N  +     +F   + L++L +  N       +    F  L NL  L
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETL 90

Query: 313 FLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKF----GGVFLRSIANLSAKITVIG 368
           +++ N L        D L  L        L L+ N+       VF     +L+ K+T + 
Sbjct: 91  WVTDNKLQALPIGVFDQLVNLAE------LRLDRNQLKSLPPRVF----DSLT-KLTYLS 139

Query: 369 MGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP 427
           +G N++  ++P  +   L ++    +  NQL      A  +L  L+ L L  N L+    
Sbjct: 140 LGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198

Query: 428 DTLGNLTLLNRLFLGFN 444
               +L  L  L L  N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 23/196 (11%)

Query: 283 SNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEML 342
           ++ + LD+  N  S      F+RL+ L  L+L+ N L T        L  L        L
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET------L 90

Query: 343 YLNTNKF----GGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQ 397
           ++  NK      GVF      L   +  + +  NQ+  ++P  +  +L  +    + YN+
Sbjct: 91  WVTDNKLQALPIGVF----DQLV-NLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144

Query: 398 LTGTIPH-AIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGN 456
           L  ++P     +L +L+ L L  N L+         LT L  L L  N L+  VP   G 
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE--GA 200

Query: 457 CQNLMTLSRLLDLSGN 472
             +L  L   L L  N
Sbjct: 201 FDSLEKLKM-LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 9e-10
 Identities = 52/194 (26%), Positives = 76/194 (39%), Gaps = 16/194 (8%)

Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN 437
           IP++ K L       ++ N+L+     A   L  L+ L L  N L+         L  L 
Sbjct: 35  IPADTKKLD------LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88

Query: 438 RLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSEN 496
            L++  N LQ  +P   G    L+ L+  L L  N L  S+P  V  +L  L    L  N
Sbjct: 89  TLWVTDNKLQ-ALPI--GVFDQLVNLAE-LRLDRNQL-KSLPPRVFDSLTKLTYLSLGYN 143

Query: 497 HFSNEIPVTL-SACTTLEYLHLQGNSFSGSLPLSL-KTLKSIKELDLSRNNLSGQIPKYL 554
              + +P  +    T+L+ L L  N     +P      L  +K L L  N L        
Sbjct: 144 ELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

Query: 555 ENLLFLAYLNLSYN 568
           ++L  L  L L  N
Sbjct: 202 DSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 17/198 (8%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAI-GELKN 411
           L +I +N+ A    + +  N++S         L  +    +  N+L  T+P  I  ELKN
Sbjct: 28  LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 412 LQGLALVRNSLRGTIP-DTLGNLTLLNRLFLGFNNLQ---GNVPSSLGNCQNLMTLSRLL 467
           L+ L +  N L+  +P      L  L  L L  N L+     V  SL            L
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY-------L 138

Query: 468 DLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSL 526
            L  N L  S+P  V   L +L E  L  N             T L+ L L  N      
Sbjct: 139 SLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197

Query: 527 PLSLKTLKSIKELDLSRN 544
             +  +L+ +K L L  N
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 18/170 (10%)

Query: 208 QLRSLNYLSISENNFSCKLPLSIWN-ISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSV 266
           +L  L  L +++N     LP  I+  + +LE + +  N+ + +LP+ +   + N+  L +
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 267 GQNNFTGSLPHS-FSNASNLQVLDVYKNHFS---GQVKIDFNRLSNLSRLFLSKNNLGTE 322
            +N    SLP   F + + L  L +  N        V   F++L++L  L L  N L   
Sbjct: 117 DRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGV---FDKLTSLKELRLYNNQLKRV 172

Query: 323 STSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDN 372
                D LT L        L L+ N+   V   +  +L  K+ ++ + +N
Sbjct: 173 PEGAFDKLTELK------TLKLDNNQLKRVPEGAFDSLE-KLKMLQLQEN 215

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR 103
            +  ++F    ++GQG+FG V K +        A+K +    +    + ++E   L+++ 
Sbjct: 2   LRYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIR-HTEEKLSTILSEVMLLASLN 60

Query: 104 HRNLIKIITV-----CSSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLE 149
           H+ +++                 V  K+ ++   EY + G+  D +H  N   +
Sbjct: 61  HQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQ 114

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 54  NMIGQGSFGFVYKGKL----GETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRN 106
            ++G G+FG VYKG       +    VA+K   L+      A K  + E   +++V + +
Sbjct: 21  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKE--LREATSPKANKEILDEAYVMASVDNPH 78

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           + +++ +C +   +      LI + M  G   D++ +  D + +  L
Sbjct: 79  VCRLLGICLTSTVQ------LITQLMPFGCLLDYVREHKDNIGSQYL 119

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 54  NMIGQGSFGFVYKGKL---GETGTTVAVKVMNLKQKGAA----KSFVTECEALSNVRHRN 106
            +IG+G FG VY G+     +     A+K ++   +       ++F+ E   +  + H N
Sbjct: 27  RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLS---RITEMQQVEAFLREGLLMRGLNHPN 83

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           ++ +I +      +G+    ++  YM  G 
Sbjct: 84  VLALIGIML--PPEGLPH--VLLPYMCHGD 109

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 56  IGQGSFGFVYKGKL---GETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRHRNLIK 109
           +G GSFG V +G+         +VAVK +    L Q  A   F+ E  A+ ++ HRNLI+
Sbjct: 26  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           +  V  +   K      ++ E    GS  D + +       G L
Sbjct: 86  LYGVVLTPPMK------MVTELAPLGSLLDRLRKHQGHFLLGTL 123

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITV 113
           IG+GSF  VYKG   ET   VA   +  ++  K   + F  E E L  ++H N+++    
Sbjct: 34  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD- 92

Query: 114 CSSIDFKGVDFKALIY-EYMKCGS 136
            S           ++  E M  G+
Sbjct: 93  -SWESTVKGKKCIVLVTELMTSGT 115

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 54  NMIGQGSFGFVYKGKL---GETGTTVAVKVMN-LKQKGAAKSFVTECEALSNVRHRNLIK 109
            +IG+G FG VY G L          AVK +N +   G    F+TE   + +  H N++ 
Sbjct: 31  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           ++ +C   +   +    ++  YMK G   +++          +L
Sbjct: 91  LLGICLRSEGSPL----VVLPYMKHGDLRNFIRNETHNPTVKDL 130

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 12/105 (11%)

Query: 56  IGQGSFGFVYKGKLGETG-------TTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLI 108
           +GQG+F  ++KG   E G       T V +KV++   +  ++SF      +S + H++L+
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75

Query: 109 KIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
               VC      G +   L+ E++K GS + ++ ++ + +     
Sbjct: 76  LNYGVCV----CGDEN-ILVQEFVKFGSLDTYLKKNKNCINILWK 115

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 19/199 (9%)

Query: 362 AKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNS 421
           A      +G   +  T     K L  +  F  + + +       +    NL+ L L  N 
Sbjct: 19  ANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ 74

Query: 422 LRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE 481
           +    P  L +LT L  L +  N L      +L    +   L   L L  N L  +  L 
Sbjct: 75  ISDLSP--LKDLTKLEELSVNRNRL-----KNLNGIPSA-CL-SRLFLDNNELRDTDSLI 125

Query: 482 VGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDL 541
             +L+NL    +  N   + +   L   + LE L L GN  + +  L+   LK +  +DL
Sbjct: 126 --HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDL 179

Query: 542 SRNNLSGQIPKYLENLLFL 560
           +      +  KY   L   
Sbjct: 180 TGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 17/164 (10%)

Query: 406 IGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSR 465
              L N     L + S+  T   +   L+ +       +N+Q    + +    NL    +
Sbjct: 15  DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNL----K 66

Query: 466 LLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGS 525
            L LS N +    PL+  +L  L E  ++ N   N   +       L  L L  N    +
Sbjct: 67  ELHLSHNQISDLSPLK--DLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRDT 121

Query: 526 LPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569
             L    LK+++ L +  N L   +   L  L  L  L+L  N 
Sbjct: 122 DSLI--HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 43/245 (17%), Positives = 90/245 (36%), Gaps = 34/245 (13%)

Query: 330 LTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSA--KITVIGMGDNQISGTIPSEIKNLVN 387
           +      +      L         +  + +      +      ++ I  ++ + ++   N
Sbjct: 12  VFPDPGLANAVKQNLGKQS-----VTDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTN 64

Query: 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
           +    + +NQ++   P  + +L  L+ L++ RN L     + + +  L +RLFL  N L+
Sbjct: 65  LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL--KNLNGIPSACL-SRLFLDNNELR 119

Query: 448 GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLS 507
                SL + +NL     +L +  N L   + L    L  L   DL  N  +N     L+
Sbjct: 120 D--TDSLIHLKNL----EILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEITNTGG--LT 169

Query: 508 ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN--NLSGQI--PKYLENLLFLAYL 563
               + ++ L G           + +K   EL ++    +  G+   P Y+ N       
Sbjct: 170 RLKKVNWIDLTGQ------KCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDG 223

Query: 564 NLSYN 568
            + + 
Sbjct: 224 CVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 33/211 (15%), Positives = 75/211 (35%), Gaps = 29/211 (13%)

Query: 232 NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVY 291
            +++    +L        +       +  V   +   +N   SL       +NL+ L + 
Sbjct: 17  GLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLS 71

Query: 292 KNHFSGQVKID-FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFG 350
            N  S    +     L+ L  L +++N L      +L+ +        +  L+L+ N+  
Sbjct: 72  HNQIS---DLSPLKDLTKLEELSVNRNRL-----KNLNGIPSAC----LSRLFLDNNE-- 117

Query: 351 GVFLRSIANLSA--KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGE 408
              LR   +L     + ++ + +N++  +I   +  L  +    +  N++T T    +  
Sbjct: 118 ---LRDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGG--LTR 170

Query: 409 LKNLQGLALVRNSLRGTIPDTLGNLTLLNRL 439
           LK +  + L               L + N +
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 18/178 (10%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPD--SLCQLRSLNYLSI 217
            L  ++  +  ++ +  +    +  F+ L+ + +S N    +I D   L  L  L  LS+
Sbjct: 39  ELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHN----QISDLSPLKDLTKLEELSV 92

Query: 218 SENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH 277
           + N       +     + L  + L +N    +  L    ++ N+  LS+  N    S+  
Sbjct: 93  NRNRLKNLNGIPS---ACLSRLFLDNNELRDTDSLI---HLKNLEILSIRNNKLK-SIV- 144

Query: 278 SFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTN 335
                S L+VLD++ N  +        RL  ++ + L+      E       L +   
Sbjct: 145 MLGFLSKLEVLDLHGNEIT--NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 29/153 (18%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN 106
              F     +G+GS+G VYK    ETG  VA+K + ++     +  + E   +      +
Sbjct: 28  EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD--LQEIIKEISIMQQCDSPH 85

Query: 107 LIKIITVCSSIDFKGVDFKA----LIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLL 162
           ++K         + G  FK     ++ EY   GS  D +   N  L    +  I +  L 
Sbjct: 86  VVK---------YYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLK 136

Query: 163 KLEMI--------DV-GDNQLIG-----KFPDF 181
            LE +        D+   N L+      K  DF
Sbjct: 137 GLEYLHFMRKIHRDIKAGNILLNTEGHAKLADF 169

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 15/105 (14%)

Query: 56  IGQGSFGFVYKGKLGETG----TTVAVKVMNLKQKGAAKS---FVTECEALSNVRHRNLI 108
           +G G FG V+KG     G      V +KV  ++ K   +S         A+ ++ H +++
Sbjct: 21  LGSGVFGTVHKGVWIPEGESIKIPVCIKV--IEDKSGRQSFQAVTDHMLAIGSLDHAHIV 78

Query: 109 KIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           +++ +C     +      L+ +Y+  GS  D + Q    L    L
Sbjct: 79  RLLGLCPGSSLQ------LVTQYLPLGSLLDHVRQHRGALGPQLL 117

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV 102
           S + + +  S+++GQG+   V++G+  +TG   A+KV N           + E E L  +
Sbjct: 5   STSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL 64

Query: 103 RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
            H+N++K+  +    +      K LI E+  CGS
Sbjct: 65  NHKNIVKLFAI---EEETTTRHKVLIMEFCPCGS 95

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 16/132 (12%)

Query: 16  TGRRKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTT 75
                 +   +          +V   D         +   IG+GS G V   +   +G  
Sbjct: 16  ENLYFQSGVVTHEQFKAALRMVVDQGDPRL---LLDSYVKIGEGSTGIVCLAREKHSGRQ 72

Query: 76  VAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA----LIYEY 131
           VAVK+M+L+++   +    E   + + +H N+++                     ++ E+
Sbjct: 73  VAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVE---------MYKSYLVGEELWVLMEF 123

Query: 132 MKCGSSEDWMHQ 143
           ++ G+  D + Q
Sbjct: 124 LQGGALTDIVSQ 135

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 13/98 (13%)

Query: 50  FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIK 109
           ++    IGQG+ G VY      TG  VA++ MNL+Q+   +  + E   +   ++ N++ 
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 81

Query: 110 IITVCSSIDFKGVDFKA----LIYEYMKCGSSEDWMHQ 143
                    +           ++ EY+  GS  D + +
Sbjct: 82  ---------YLDSYLVGDELWVVMEYLAGGSLTDVVTE 110

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 16  TGRRKHTQKSSRTLPMEQQFPMVSYADLSKATNN------FSASNMIGQGSFGFVYKGKL 69
           T    + Q +   +P   +   +   D+++          FS    IG GSFG VY  + 
Sbjct: 16  TTENLYFQGAMDPMPAGGRAGSLKDPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARD 75

Query: 70  GETGTTVAVKVMNLKQKGAA---KSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126
                 VA+K M+   K +    +  + E   L  +RH N I+         ++G   + 
Sbjct: 76  VRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQ---------YRGCYLRE 126

Query: 127 ----LIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLE 165
               L+ EY   GS+ D +      L+   +  +    L  L 
Sbjct: 127 HTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLA 168

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 54  NMIGQGSFGFVYKGKL----GETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRN 106
            ++G G+FG VYKG       +    VA+K   L+      A K  + E   +++V + +
Sbjct: 21  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKE--LREATSPKANKEILDEAYVMASVDNPH 78

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           + +++ +C +   +      LI + M  G   D++ +  D + +  L
Sbjct: 79  VCRLLGICLTSTVQ------LITQLMPFGCLLDYVREHKDNIGSQYL 119

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 15/181 (8%)

Query: 395 YNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDT-LGNLTLLNRLFLGFNNLQGNVPSS 453
             QL   +P ++        L L  N+L     +     LT L+ L L  N+L      +
Sbjct: 27  KQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83

Query: 454 LGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTL 512
                NL    R LDLS N L  ++   +  +L+ L    L  NH              L
Sbjct: 84  FVPVPNL----RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138

Query: 513 EYLHLQGNSFSGSLP----LSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
           + L+L  N  S   P         L  +  LDLS N L       L+ L       L  +
Sbjct: 139 QKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 569 H 569
           +
Sbjct: 198 N 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 39/200 (19%), Positives = 63/200 (31%), Gaps = 48/200 (24%)

Query: 257 NIP-NVNFLSVGQNNFTGSLP--HSFSNASNLQVLDVYKNHFSGQVKID---FNRLSNLS 310
           ++P     L +  NN +  L    + +  +NL  L +  NH +    I    F  + NL 
Sbjct: 36  SLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLR 91

Query: 311 RLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMG 370
            L LS N+L T        L  L        L L                          
Sbjct: 92  YLDLSSNHLHTLDEFLFSDLQALEV------LLLY------------------------- 120

Query: 371 DNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIP----HAIGELKNLQGLALVRNSLRGT 425
           +N I   +     +++  +    +  NQ++   P        +L  L  L L  N L+  
Sbjct: 121 NNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 426 IPDTLGNLTLLNRLFLGFNN 445
               L  L    +  L  +N
Sbjct: 179 PLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 458 QNLMTLSRLLDLSGNLLGGSIPLEV--GNLRNLAEFDLSENHFSNEIPV-TLSACTTLEY 514
           Q+L + + LLDLS N L   +  E     L NL    LS NH +  I          L Y
Sbjct: 35  QSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRY 92

Query: 515 LHLQGNSFSGSLP-LSLKTLKSIKELDLSRNNLSGQIPKY-LENLLFLAYLNLSYNHFEG 572
           L L  N    +L       L++++ L L  N++   + +   E++  L  L LS N    
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS- 149

Query: 573 EVPRKGVFGNRTGIH 587
             P   +  +   + 
Sbjct: 150 RFPV-ELIKDGNKLP 163

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 13/164 (7%)

Query: 337 SQMEMLYLNTNKF-----GGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINA 390
           S   +L L+ N                 L+  +  + +  N ++  I SE    + N+  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTP----TRLT-NLHSLLLSHNHLN-FISSEAFVPVPNLRY 92

Query: 391 FGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNV 450
             +  N L         +L+ L+ L L  N +     +   ++  L +L+L  N +    
Sbjct: 93  LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 451 PSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLS 494
              + +   L  L  LLDLS N L      ++  L    +  L 
Sbjct: 153 VELIKDGNKLPKL-MLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 11/165 (6%)

Query: 188 LEAIDISANMLGGRIPD-SLCQLRSLNYLSISENNFSCKLPLSIW-NISSLEIISLHSNR 245
              +D+S N L     + +  +L +L+ L +S N+ +  +    +  + +L  + L SN 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 246 FEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH---FSGQVKID 302
              +L   +  ++  +  L +  N+      ++F + + LQ L + +N    F  ++  D
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 303 FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTN 347
            N+L  L  L LS N L     +DL  L           LYL+ N
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK----NGLYLHNN 199

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 16/86 (18%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA--AKSFVTECEALSNVRHRNLIKIITV 113
           +G G +G VY+G   +   TVAVK +    +     + F+ E   +  ++H NL++++ V
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLK---EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77

Query: 114 CSSIDFKGVDFKALIY---EYMKCGS 136
           C+         +   Y   E+M  G+
Sbjct: 78  CTR--------EPPFYIITEFMTYGN 95

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 54  NMIGQGSFGFVYKGKL---GETGTTVAVKVMN-LKQKGAAKSFVTECEALSNVRHRNLIK 109
            +IG+G FG VY G L          AVK +N +   G    F+TE   + +  H N++ 
Sbjct: 95  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           ++ +C   +   +    ++  YMK G   +++          +L
Sbjct: 155 LLGICLRSEGSPL----VVLPYMKHGDLRNFIRNETHNPTVKDL 194

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 12/84 (14%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G G +G VY+G   +   TVAVK +  +     + F+ E   +  ++H NL++++ VC+
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 286

Query: 116 SIDFKGVDFKALIY---EYMKCGS 136
                    +   Y   E+M  G+
Sbjct: 287 R--------EPPFYIITEFMTYGN 302

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 16/105 (15%)

Query: 56  IGQGSFGFVYKGKL---GETGTTVAVKVMNL-KQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G FG VY+G           VAVK           + F++E   + N+ H +++K+I
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79

Query: 112 TVCSSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLEAGNL 153
            +           +   +   E    G    ++ ++ + L+   L
Sbjct: 80  GIIE---------EEPTWIIMELYPYGELGHYLERNKNSLKVLTL 115

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN-LKQKGAAKSFVTECEALSNV 102
           S + + +  S+++GQG+   V++G+  +TG   A+KV N +         + E E L  +
Sbjct: 5   STSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL 64

Query: 103 RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
            H+N++K+  +    +      K LI E+  CGS
Sbjct: 65  NHKNIVKLFAI---EEETTTRHKVLIMEFCPCGS 95

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 22/109 (20%)

Query: 56  IGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGA----AKSFVTECEALSNVRHRNL 107
           IG G FG VYKG L    G+    VA+K +     G        F+ E   +    H N+
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK---AGYTEKQRVDFLGEAGIMGQFSHHNI 108

Query: 108 IKIITVCSSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLEAGNL 153
           I++  V S            +    EYM+ G+ + ++ + + +     L
Sbjct: 109 IRLEGVISKYK--------PMMIITEYMENGALDKFLREKDGEFSVLQL 149

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 19/107 (17%)

Query: 56  IGQGSFGFVYKGKLGETG---TTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIK 109
           IG G  G V  G+L   G     VA+K   LK    +   + F++E   +    H N+I+
Sbjct: 57  IGSGDSGEVCYGRLRVPGQRDVPVAIKA--LKAGYTERQRRDFLSEASIMGQFDHPNIIR 114

Query: 110 IITVCSSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLEAGNL 153
           +  V +           L     EYM+ GS + ++   + +     L
Sbjct: 115 LEGVVTR--------GRLAMIVTEYMENGSLDTFLRTHDGQFTIMQL 153

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 11/102 (10%)

Query: 56  IGQGSFGFVYKGKL--GETGTTVAVKVM--NLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+FG V KG     +   TVAVK++             + E   +  + +  ++++I
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 84

Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
            +C +  +       L+ E  + G    ++ Q N  ++  N+
Sbjct: 85  GICEAESWM------LVMEMAELGPLNKYL-QQNRHVKDKNI 119

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 18/106 (16%)

Query: 56  IGQGSFGFVYKGKL---GETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKII 111
           IG+G FG V++G           VA+K           + F+ E   +    H +++K+I
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82

Query: 112 TVCSS----IDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
            V +     I          I E    G    ++      L+  +L
Sbjct: 83  GVITENPVWI----------IMELCTLGELRSFLQVRKYSLDLASL 118

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 10/86 (11%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKI 110
           +G+G+FG V+  +       +    VAVK +    + A + F  E E L+ ++H+++++ 
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108

Query: 111 ITVCSSIDFKGVDFKALIYEYMKCGS 136
             VC+    +G     +++EYM+ G 
Sbjct: 109 FGVCT----EGRPL-LMVFEYMRHGD 129

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 12/146 (8%)

Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN 437
           +P  I  +       +E N +    P A    K L+ + L  N +    PD    L  LN
Sbjct: 30  LPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83

Query: 438 RLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSEN 496
            L L  N +   +P      + L +L +LL L+ N +   + ++   +L NL    L +N
Sbjct: 84  SLVLYGNKIT-ELPK--SLFEGLFSL-QLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDN 138

Query: 497 HFSNEIPVTLSACTTLEYLHLQGNSF 522
                   T S    ++ +HL  N F
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 36/167 (21%)

Query: 257 NIP-NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLS 315
           N+P  +  + + QN      P +FS    L+ +D+  N  S      F  L +L+ L L 
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88

Query: 316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQIS 375
            N +     S  + L  L       +L LN NK     +                     
Sbjct: 89  GNKITELPKSLFEGLFSLQ------LLLLNANK-----INC------------------- 118

Query: 376 GTIPSEI-KNLVNINAFGVEYNQLTGTIPH-AIGELKNLQGLALVRN 420
             +  +  ++L N+N   +  N+L  TI       L+ +Q + L +N
Sbjct: 119 --LRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 8/136 (5%)

Query: 438 RLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSEN 496
            + L  N ++   P +    + L    R +DLS N +   +  +    LR+L    L  N
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKL----RRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 497 HFSNEIPVTLSACTTLEYLHLQGNSFSGSLPL-SLKTLKSIKELDLSRNNLSGQIPKYLE 555
             +           +L+ L L  N  +  L + + + L ++  L L  N L         
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 556 NLLFLAYLNLSYNHFE 571
            L  +  ++L+ N F 
Sbjct: 150 PLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 203 PDSLCQLRSLNYLSISENNFSCKLPLSI-WNISSLEIISLHSNRFEGSLPLNIGFNIPNV 261
           P +    + L  + +S N  S +L       + SL  + L+ N+    LP ++   + ++
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSL 106

Query: 262 NFLSVGQNNFTGSLPH-SFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN 317
             L +  N     L   +F +  NL +L +Y N      K  F+ L  +  + L++N
Sbjct: 107 QLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC 224
             I +  N +    P   + +  L  ID+S N +    PD+   LRSLN L +  N  + 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 225 KLPLSIW-NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH-SFSNA 282
           +LP S++  + SL+++ L++N+    L ++   ++ N+N LS+  N    ++   +FS  
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPL 151

Query: 283 SNLQVLDVYKNHF 295
             +Q + + +N F
Sbjct: 152 RAIQTMHLAQNPF 164

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 14/88 (15%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKI 110
           +G+G+FG V+  +       +    VAVK +      A K F  E E L+N++H +++K 
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82

Query: 111 ITVCSSID--FKGVDFKALIYEYMKCGS 136
             VC   D          +++EYMK G 
Sbjct: 83  YGVCGDGDPLI-------MVFEYMKHGD 103

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 60.7 bits (147), Expect = 7e-10
 Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 56  IGQGSFGFVYKGKLGETG--TTVAVKVM-NLKQKGAAKSFVTECEALSNVRHRNLIKIIT 112
           +G G+FG V +G          VA+KV+    +K   +  + E + +  + +  ++++I 
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403

Query: 113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           VC +          L+ E    G    ++    +++   N+
Sbjct: 404 VCQAEALM------LVMEMAGGGPLHKFLVGKREEIPVSNV 438

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 59.2 bits (144), Expect = 9e-10
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 13/103 (12%)

Query: 56  IGQGSFGFVYKGKLGETG--TTVAVKVMNLKQKGAAKS---FVTECEALSNVRHRNLIKI 110
           +G G+FG V +G          VA+KV  LKQ          + E + +  + +  ++++
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKV--LKQGTEKADTEEMMREAQIMHQLDNPYIVRL 75

Query: 111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
           I VC +          L+ E    G    ++    +++   N+
Sbjct: 76  IGVCQAEALM------LVMEMAGGGPLHKFLVGKREEIPVSNV 112

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKS-FVTECEALSNVRHRNLIK 109
           +G G+FG VY+G++       +   VAVK +        +  F+ E   +S   H+N+++
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGS 136
            I V      + +    ++ E M  G 
Sbjct: 98  CIGVSL----QSLPR-FILMELMAGGD 119

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 21/92 (22%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKS----FVTECEALSNVRHRN 106
           +G+G FG V K            TTVAVK++    + A+ S     ++E   L  V H +
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLK---ENASPSELRDLLSEFNVLKQVNHPH 87

Query: 107 LIKIITVCSSID--FKGVDFKALIYEYMKCGS 136
           +IK+   CS             LI EY K GS
Sbjct: 88  VIKLYGACSQDGPLL-------LIVEYAKYGS 112

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 11/127 (8%)

Query: 31  MEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK 90
           M +    + ++      +++    +IG G+   V           VA+K +NL++   + 
Sbjct: 1   MSEDSSALPWSINR---DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSM 57

Query: 91  S-FVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA-LIYEYMKCGSSEDWMHQSNDKL 148
              + E +A+S   H N++      S +    V  +  L+ + +  GS  D +     K 
Sbjct: 58  DELLKEIQAMSQCHHPNIVSYY--TSFV----VKDELWLVMKLLSGGSVLDIIKHIVAKG 111

Query: 149 EAGNLGL 155
           E  +  L
Sbjct: 112 EHKSGVL 118

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVC 114
           IG+G+FG V+ G+L    T VAVK             F+ E   L    H N++++I VC
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181

Query: 115 SSIDFKGVDFKALIY---EYMKCGS 136
           +         K  IY   E ++ G 
Sbjct: 182 TQ--------KQPIYIVMELVQGGD 198

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKS-FVTECEALSNVRHRNLIKIITVC 114
           IG+GSFG V+KG    T   VA+K+++L++          E   LS      + K     
Sbjct: 30  IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTK----- 84

Query: 115 SSIDFKGVDFKA----LIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLE 165
               + G   K     +I EY+  GS+ D +      L+   +  I R  L  L+
Sbjct: 85  ----YYGSYLKDTKLWIIMEYLGGGSALDLLE--PGPLDETQIATILREILKGLD 133

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 21/92 (22%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKS----FVTECEALSNVRHRN 106
           +GQGSFG VY+G        E  T VA+K +N   + A+      F+ E   +      +
Sbjct: 33  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN---EAASMRERIEFLNEASVMKEFNCHH 89

Query: 107 LIKIITVCSSID--FKGVDFKALIYEYMKCGS 136
           +++++ V S             +I E M  G 
Sbjct: 90  VVRLLGVVSQGQPTL-------VIMELMTRGD 114

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 17/103 (16%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA--AKSFVTECEALSNVRHRNLIKIITV 113
           +G G FG V  GK       VA+K++    +G+     F+ E + + N+ H  L+++  V
Sbjct: 32  LGTGQFGVVKYGKWRGQ-YDVAIKMIK---EGSMSEDEFIEEAKVMMNLSHEKLVQLYGV 87

Query: 114 CSSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLEAGNL 153
           C+         +  I+   EYM  G   +++ +   + +   L
Sbjct: 88  CTK--------QRPIFIITEYMANGCLLNYLREMRHRFQTQQL 122

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 56  IGQGSFGFVYKGKL---GETGTTVAVKVMNLKQKGAAKS-FVTECEALSNVRHRNLIKII 111
           IG+G FG V++G           VA+K        + +  F+ E   +    H +++K+I
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457

Query: 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNL 153
            V +       +   +I E    G    ++      L+  +L
Sbjct: 458 GVITE------NPVWIIMELCTLGELRSFLQVRKFSLDLASL 493

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 15/102 (14%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKS-FVTECEALSNVRHRNLIKIITVC 114
           IG G FG V+ G        VA+K   +++   ++  F+ E E +  + H  L+++  VC
Sbjct: 16  IGSGQFGLVHLGYWLNK-DKVAIKT--IREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVC 72

Query: 115 SSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLEAGNL 153
                     +A I    E+M+ G   D++        A  L
Sbjct: 73  LE--------QAPICLVTEFMEHGCLSDYLRTQRGLFAAETL 106

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 17/90 (18%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKS----FVTECEALSNVRHRN 106
           +G G+FG VY+G++       +   VAVK +    +  ++     F+ E   +S   H+N
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLP---EVCSEQDELDFLMEALIISKFNHQN 135

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           +++ I V      + +    ++ E M  G 
Sbjct: 136 IVRCIGVSL----QSLPR-FILLELMAGGD 160

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G+G F +V   +    G   A+K +   ++   +    E +      H N+++++    
Sbjct: 37  LGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVA--Y 94

Query: 116 SIDFKGVDFKALIY-EYMKCGS 136
            +  +G   +A +   + K G+
Sbjct: 95  CLRERGAKHEAWLLLPFFKRGT 116

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 17/90 (18%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKS----FVTECEALSNVRHRN 106
           IG+G+FG V++ +       E  T VAVK++    + A+      F  E   ++   + N
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLK---EEASADMQADFQREAALMAEFDNPN 111

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           ++K++ VC+     G     L++EYM  G 
Sbjct: 112 IVKLLGVCA----VGKPM-CLLFEYMAYGD 136

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 19/107 (17%)

Query: 56  IGQGSFGFVYKGKL---GETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIK 109
           +G G FG V  G+L    +   +VA+K   LK    +   + F+ E   +    H N+I+
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKT--LKVGYTEKQRRDFLGEASIMGQFDHPNIIR 110

Query: 110 IITVCSSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLEAGNL 153
           +  V +            +    EYM+ GS + ++ + + +     L
Sbjct: 111 LEGVVTKSK--------PVMIVTEYMENGSLDSFLRKHDAQFTVIQL 149

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 51/223 (22%), Positives = 86/223 (38%), Gaps = 32/223 (14%)

Query: 232 NIS-SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDV 290
           +        +L               N  +    +   N+   S+        N++ L +
Sbjct: 16  DAFAETIKANLKKKSVT-DAVTQNELNSIDQIIAN---NSDIKSVQ-GIQYLPNVRYLAL 70

Query: 291 YKNHFSGQVKID-FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKF 349
             N       I     L+NL+ L L+ N L +      D LT L        L L  N+ 
Sbjct: 71  GGNKLH---DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE------LVLVENQL 121

Query: 350 ----GGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPH 404
                GVF   + NL    T + +  NQ+  ++P  +   L N+    + YNQL  ++P 
Sbjct: 122 QSLPDGVF-DKLTNL----TYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPE 174

Query: 405 AI-GELKNLQGLALVRNSLRGTIPD-TLGNLTLLNRLFLGFNN 445
            +  +L  L+ L L +N L+ ++PD     LT L  ++L  +N
Sbjct: 175 GVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL-HDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 303 FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFG--GVFLRSIANL 360
            N L+++ ++  + +++  +S   + +L  +        L L  NK        + + NL
Sbjct: 37  QNELNSIDQIIANNSDI--KSVQGIQYLPNVRY------LALGGNKLHDISAL-KELTNL 87

Query: 361 SAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAI-GELKNLQGLALV 418
               T + +  NQ+  ++P+ +   L N+    +  NQL  ++P  +  +L NL  L L 
Sbjct: 88  ----TYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLA 141

Query: 419 RNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
            N L+         LT L  L L +N LQ
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 21/122 (17%)

Query: 28  TLPMEQQFPMVSYADLSK---ATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVK 79
            LP+++    + Y D SK     +       +G+G+FG V +          T  TVAVK
Sbjct: 5   ELPLDEHCERLPY-DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVK 63

Query: 80  VMNLKQKGA----AKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIYEYMKC 134
           ++    +GA     ++ ++E + L ++  H N++ ++  C+           +I E+ K 
Sbjct: 64  MLK---EGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP----LMVIVEFCKF 116

Query: 135 GS 136
           G+
Sbjct: 117 GN 118

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKS-FVTECEALSNVRHRNLIK 109
           +G+  FG VYKG L     GE    VA+K +  K +G  +  F  E    + ++H N++ 
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76

Query: 110 IITVCSSID--FKGVDFKALIYEYMKCGS 136
           ++ V +             +I+ Y   G 
Sbjct: 77  LLGVVTKDQPLS-------MIFSYCSHGD 98

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 50  FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLI 108
           F    ++G G++G VYKG+  +TG   A+KVM++      +    E   L     HRN+ 
Sbjct: 26  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIA 84

Query: 109 KIITVCSSIDFKGVDFKA-LIYEYMKCGSSEDWMHQSNDK 147
                    +  G+D +  L+ E+   GS  D +  +   
Sbjct: 85  TYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGN 124

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G G FG V+     +  T VAVK M      + ++F+ E   +  ++H  L+K+  V +
Sbjct: 196 LGAGQFGEVWMATYNKH-TKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT 253

Query: 116 SIDFKGVDFKALIYEYMKCGS 136
                  +   +I E+M  GS
Sbjct: 254 K------EPIYIITEFMAKGS 268

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 17/103 (16%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA--AKSFVTECEALSNVRHRNLIKIITV 113
           +G G FG V  GK       VAVK++    +G+     F  E + +  + H  L+K   V
Sbjct: 16  LGSGQFGVVKLGKWKGQ-YDVAVKMIK---EGSMSEDEFFQEAQTMMKLSHPKLVKFYGV 71

Query: 114 CSSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLEAGNL 153
           CS         +  IY   EY+  G   +++      LE   L
Sbjct: 72  CSK--------EYPIYIVTEYISNGCLLNYLRSHGKGLEPSQL 106

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 18/86 (20%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA--AKSFVTECEALSNVRHRNLIKIITV 113
           +G G FG V+ G      T VAVK +    +G+    +F+ E   +  ++H+ L+++  V
Sbjct: 21  LGAGQFGEVWMGYYNGH-TKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRLVRLYAV 76

Query: 114 CSSIDFKGVDFKALIY---EYMKCGS 136
            +         +  IY   EYM+ GS
Sbjct: 77  VT---------QEPIYIITEYMENGS 93

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 17/99 (17%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVC 114
           ++G+G++G VY G+       +A+K +  +    ++    E     +++H+N+++     
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQ----- 83

Query: 115 SSIDFKGVDFKA---LIY-EYMKCGSSEDWMHQSNDKLE 149
               + G   +     I+ E +  GS    +      L+
Sbjct: 84  ----YLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLK 118

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR 103
            +   +F    +IG G FG V+K K    G T  +K +    + A +    E +AL+ + 
Sbjct: 7   KRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER----EVKALAKLD 62

Query: 104 HRNLIK 109
           H N++ 
Sbjct: 63  HVNIVH 68

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNV 102
           ++    +     +G G FG+V +    +TG  VA+K    +      + +  E + +  +
Sbjct: 10  TQTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL 69

Query: 103 RHRNLIKIITVC-SSIDFKGVDFKALIYEYMKCGS 136
            H N++    V          D   L  EY + G 
Sbjct: 70  NHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGD 104

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 15/151 (9%)

Query: 20  KHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQG--SFGFVYKGKLGETGTTVA 77
            H           Q   M S+         +    +IG+G      V   +   TG  V 
Sbjct: 2   AHHHHHHMENLYFQG--MSSFLP---EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVT 56

Query: 78  VKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCG 135
           V+ +NL+            E        H N++          F   +   ++  +M  G
Sbjct: 57  VRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRAT-----FIADNELWVVTSFMAYG 111

Query: 136 SSEDWMHQS-NDKLEAGNLGLIQRLNLLKLE 165
           S++D +     D +    +  I +  L  L+
Sbjct: 112 SAKDLICTHFMDGMNELAIAYILQGVLKALD 142

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 20  KHTQKSSRTLPMEQQFPMVSYADLSKATNNF---------SASNMIGQGSFGFVYKGKLG 70
            +  K +  L         +    ++                   +GQG FG V+ G   
Sbjct: 147 AYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWN 206

Query: 71  ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYE 130
            T T VA+K +      + ++F+ E + +  +RH  L+++  V S           ++ E
Sbjct: 207 GT-TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI------YIVTE 258

Query: 131 YMKCGS 136
           YM  GS
Sbjct: 259 YMSKGS 264

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 15/90 (16%)

Query: 54  NMIGQGSFGFVYKGKL--GETGTTVAVKVMNLKQKGAAKS----FVTECEALSNV-RHRN 106
           ++IG+G+FG V K ++         A+K M    + A+K     F  E E L  +  H N
Sbjct: 31  DVIGEGNFGQVLKARIKKDGLRMDAAIKRMK---EYASKDDHRDFAGELEVLCKLGHHPN 87

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           +I ++  C     +G  +  L  EY   G+
Sbjct: 88  IINLLGACEH---RGYLY--LAIEYAPHGN 112

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK-SFVTECEALSNVRHRNLIK---- 109
            +G+G FG V++ K        A+K + L  +  A+   + E +AL+ + H  +++    
Sbjct: 12  CLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNA 71

Query: 110 IITVCSSIDFKGVDFKALIY---EYMKCGSSEDWMHQSNDKLE 149
            +   ++   +    K  +Y   +  +  + +DWM+      E
Sbjct: 72  WLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEE 114

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 42/246 (17%), Positives = 81/246 (32%), Gaps = 45/246 (18%)

Query: 306 LSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKIT 365
             +   L L + +L T  +     L  ++       +Y++ +                  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISR------IYVSID------------------ 65

Query: 366 VIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPH-AIGELKNLQGLALVRNSLR 423
                   +   + S    NL  +    +   +    I   A+ EL  L+ L +    L+
Sbjct: 66  ------VTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 424 GTIPDT--LGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE 481
              PD   + +  +   L +  N    ++P +    Q L   +  L L  N    S+   
Sbjct: 119 -MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA--FQGLCNETLTLKLYNNGF-TSVQGY 174

Query: 482 VGNLRNLAEFDLSENHFSNEIPVTL--SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKEL 539
             N   L    L++N +   I         +    L +   S + +LP     L+ +KEL
Sbjct: 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKEL 231

Query: 540 DLSRNN 545
            ++RN 
Sbjct: 232 -IARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 12/164 (7%)

Query: 411 NLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPS-SLGNCQNLMTLSRLLDL 469
           + Q L L+   LR        NL  ++R+++  +     + S S  N   +      +++
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV----THIEI 87

Query: 470 SGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIP--VTLSACTTLEYLHLQGNSFSGSL 526
                   I  +    L  L    +         P    + +      L +  N +  S+
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 527 PL-SLKTLKS-IKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
           P+ + + L +    L L  N  +  +  Y  N   L  + L+ N
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 33/232 (14%)

Query: 259 PNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKN 317
           P+   L + + +      H+FSN  N+  + V  +    Q++   F  LS ++ + +   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT 377
              T    D      L     ++ L +           +    +    ++ + DN    +
Sbjct: 91  RNLTYIDPD-----ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN 437
           IP         NAF               G       L L  N    ++     N T L+
Sbjct: 146 IPV--------NAF--------------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD 182

Query: 438 RLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNL 488
            ++L  N     +         + +   LLD+S   +  ++P +   +L+ L
Sbjct: 183 AVYLNKNKYLTVIDKDA--FGGVYSGPSLLDVSQTSV-TALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 33/220 (15%), Positives = 81/220 (36%), Gaps = 27/220 (12%)

Query: 186 SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSI-WNISSLEIISLHSN 244
            + + + +    L      +   L +++ + +S +    +L     +N+S +  I + + 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH--SFSNASNLQVLDVYKNHFSGQVKID 302
           R    +  +    +P + FL +         P      +     +L++  N +   + ++
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 303 -FNRLSNLSR-LFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI--- 357
            F  L N +  L L  N   +      +   L         +YLN NK    +L  I   
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDA-------VYLNKNK----YLTVIDKD 198

Query: 358 --ANLSAKITVIGMGDNQISGTIPSE----IKNLVNINAF 391
               + +  +++ +    ++  +PS+    +K L+  N +
Sbjct: 199 AFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/201 (14%), Positives = 69/201 (34%), Gaps = 31/201 (15%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP-DSLCQLRSLNYLSISENNF 222
            + + + +  L        +N   +  I +S ++   ++   S   L  + ++ I     
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 223 SCKLPLSI-WNISSLEIISLHSNRFEGSLPLNIGFNIPNVNF-LSVGQNNFTGSLP-HSF 279
              +       +  L+ + + +   +   P        ++ F L +  N +  S+P ++F
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 280 SNASN-LQVLDVYKNH--------FSG----QVKIDFNRL-------------SNLSRLF 313
               N    L +Y N         F+G     V ++ N+              S  S L 
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 314 LSKNNLGTESTSDLDFLTLLT 334
           +S+ ++    +  L+ L  L 
Sbjct: 212 VSQTSVTALPSKGLEHLKELI 232

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +GQG FG V+ G    T T VA+K +      + ++F+ E + +  +RH  L+++  V S
Sbjct: 275 LGQGCFGEVWMGTWNGT-TRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 332

Query: 116 SIDFKGVDFKALIYEYMKCGS 136
                      ++ EYM  GS
Sbjct: 333 EEPI------YIVTEYMSKGS 347

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 24/95 (25%)

Query: 56  IGQGSFGFVYKGKL-------GETGTTVAVKVMNLKQKGAAKS----FVTECEALSNV-R 103
           +G+G+FG V   +         +   TVAVK++      A +      V+E E +  + +
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLK---DDATEKDLSDLVSEMEMMKMIGK 99

Query: 104 HRNLIKIITVCSSID--FKGVDFKALIYEYMKCGS 136
           H+N+I ++  C+     +       +I EY   G+
Sbjct: 100 HKNIINLLGACTQDGPLY-------VIVEYASKGN 127

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 24/95 (25%)

Query: 56  IGQGSFGFVYKGKL-------GETGTTVAVKVMNLKQKGAAKS----FVTECEALSNV-R 103
           +G+G FG V   +         +   TVAVK++      A +      V+E E +  + +
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLK---DDATEKDLSDLVSEMEMMKMIGK 145

Query: 104 HRNLIKIITVCSSID--FKGVDFKALIYEYMKCGS 136
           H+N+I ++  C+     +       +I EY   G+
Sbjct: 146 HKNIINLLGACTQDGPLY-------VIVEYASKGN 173

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRHRNLIKII 111
            +G+G F   ++    +T    A K++    L +    +    E     ++ H++++   
Sbjct: 22  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 81

Query: 112 TV 113
             
Sbjct: 82  GF 83

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 54.3 bits (130), Expect = 5e-08
 Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 25  SSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK 84
           ++   P   +  + S   LS+          +  G    V+  +  E     A+KV  + 
Sbjct: 41  TATVWPQNAETTVDS--LLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMG 98

Query: 85  QK---GAAKSFVTECEALSNVRHRNLIKI 110
            +      +       A + +   +  + 
Sbjct: 99  AENSRSELERLHEATFAAARLLGESPEEA 127

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 22/93 (23%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGAAKS----FVTECEALSNV-RHR 105
           +G G+FG V +         +   TVAVK++      A  +     ++E + LS +  H 
Sbjct: 31  LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSAHLTEREALMSELKVLSYLGNHM 87

Query: 106 NLIKIITVCSSID--FKGVDFKALIYEYMKCGS 136
           N++ ++  C+             +I EY   G 
Sbjct: 88  NIVNLLGACTIGGPTL-------VITEYCCYGD 113

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRHRNLIKII 111
            +G+G F   ++    +T    A K++    L +    +    E     ++ H++++   
Sbjct: 48  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 107

Query: 112 TV 113
             
Sbjct: 108 GF 109

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 20/93 (21%)

Query: 56  IGQGSFGFVYKGKL-------GETGTTVAVKVMNLKQKGAAKS----FVTECEALSNV-R 103
           +G+G+FG V   +            T VAVK++      A +      ++E E +  + +
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLK---SDATEKDLSDLISEMEMMKMIGK 133

Query: 104 HRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           H+N+I ++  C+    +      +I EY   G+
Sbjct: 134 HKNIINLLGACT----QDGPL-YVIVEYASKGN 161

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN 106
             +++ + +IG GSFG VY+ KL ++G  VA+K    K     +    E + +  + H N
Sbjct: 53  EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHCN 108

Query: 107 LIKIITV-CSSIDFKGVDFKALIYEYM 132
           ++++     SS + K   +  L+ +Y+
Sbjct: 109 IVRLRYFFYSSGEKKDEVYLNLVLDYV 135

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 39  SYADLSKATNNFSASNM--------IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA- 89
             + +   T N    +M        IG+GSFG     K  E G    +K +N+ +  +  
Sbjct: 7   HSSGVDLGTENLYFQSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKE 66

Query: 90  -KSFVTECEALSNVRHRNLIK 109
            +    E   L+N++H N+++
Sbjct: 67  REESRREVAVLANMKHPNIVQ 87

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 22/93 (23%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGA----AKSFVTECEALSNV-RHR 105
           +G G+FG V                VAVK++    + A     ++ ++E + ++ +  H 
Sbjct: 53  LGSGAFGKVMNATAYGISKTGVSIQVAVKMLK---EKADSSEREALMSELKMMTQLGSHE 109

Query: 106 NLIKIITVCSSID--FKGVDFKALIYEYMKCGS 136
           N++ ++  C+     +       LI+EY   G 
Sbjct: 110 NIVNLLGACTLSGPIY-------LIFEYCCYGD 135

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 18  RRKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVA 77
            R+H          + +    +   +S     +S    IG G    V++  L E     A
Sbjct: 26  ERQHMDSPDLGTDDDDKASSSANECISVKGRIYSILKQIGSGGSSKVFQV-LNEKKQIYA 84

Query: 78  VKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKII 111
           +K +NL++       S+  E   L+ ++  +  KII
Sbjct: 85  IKYVNLEEADNQTLDSYRNEIAYLNKLQQHS-DKII 119

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 18/123 (14%)

Query: 56  IGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQKGA----AKSFVTECEALSNV-RHR 105
           +G G+FG V +         +    VAVK++      A     ++ ++E + +S++ +H 
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLK---STAHADEKEALMSELKIMSHLGQHE 110

Query: 106 NLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLE 165
           N++ ++  C+     G     +I EY   G   +++ + +  LE      I        +
Sbjct: 111 NIVNLLGACT----HGGPV-LVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRD 165

Query: 166 MID 168
           ++ 
Sbjct: 166 LLH 168

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVK-VMNLKQKGAAKSFVTECEALSNV 102
            K  + F    M GQG+FG V  GK   TG +VA+K V  ++        +   + L+ +
Sbjct: 19  RKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKV--IQDPRFRNRELQIMQDLAVL 76

Query: 103 RHRNLIKIITVCSSIDFKGVD--FKALIYEYM 132
            H N++++ +   ++  +     +  ++ EY+
Sbjct: 77  HHPNIVQLQSYFYTLGERDRRDIYLNVVMEYV 108

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 13/90 (14%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVT-ECEALSNVRHRNLIKII 111
           +G+GS+G V +    ET    AVK++    L++    ++ V  E + L  +RH+N+I+++
Sbjct: 13  LGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLV 72

Query: 112 TVCSSIDFKGVDFKALIY---EYMKCGSSE 138
            V  +      + K  +Y   EY  CG  E
Sbjct: 73  DVLYN------EEKQKMYMVMEYCVCGMQE 96

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 14/167 (8%)

Query: 189 EAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWN-ISSLEIISLHSNRFE 247
           E +D+ +  L      +   L  L +L++  N     L   +++ ++ L  + L +N+  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 248 GSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS-FSNASNLQVLDVYKNHFSGQVKIDFNRL 306
            SLPL +  ++  ++ L +G N    SLP   F   + L+ L +  N         F++L
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

Query: 307 SNLSRLFLSKNNLGTESTSDLDFLTLLT---------NCSQMEMLYL 344
           +NL  L LS N L +      D L  L          +CS+ E+LYL
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYL 201

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 44/169 (26%), Positives = 62/169 (36%), Gaps = 14/169 (8%)

Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN 437
           IP++ + L       ++   L          L  L  L L  N L+        +LT L 
Sbjct: 33  IPADTEKLD------LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86

Query: 438 RLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV-GNLRNLAEFDLSEN 496
            L L  N L  ++P   G   +L  L + L L GN L  S+P  V   L  L E  L+ N
Sbjct: 87  TLGLANNQLA-SLPL--GVFDHLTQLDK-LYLGGNQL-KSLPSGVFDRLTKLKELRLNTN 141

Query: 497 HFSNEIPV-TLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN 544
                IP       T L+ L L  N        +   L  ++ + L  N
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 15/173 (8%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           L S+ + + A    + +    ++    +  + L  +    ++YNQL         +L  L
Sbjct: 26  LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPS----SLGNCQNLMTLSRLLD 468
             L L  N L         +LT L++L+LG N L+  +PS     L   +        L 
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKE-------LR 137

Query: 469 LSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGN 520
           L+ N L  SIP      L NL    LS N   +           L+ + L GN
Sbjct: 138 LNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 14/96 (14%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITV 113
           ++ +G F FVY+ +   +G   A+K +   ++   ++ + E   +  +  H N+++  + 
Sbjct: 35  VLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSA 94

Query: 114 CSSI--DFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
            S    +      + L+   +  G   +++ +   +
Sbjct: 95  ASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESR 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 76/488 (15%), Positives = 147/488 (30%), Gaps = 144/488 (29%)

Query: 97  EALSNVR-HRNLI--------K---IITVCSSIDFKGV-DFKALIYEYMKCGSSEDWMHQ 143
           +AL  +R  +N++        K    + VC S   +   DFK  I+          W+  
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--IF----------WL-- 187

Query: 144 SNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKF-PDFIANFSALEAIDISANMLGGRI 202
                   NL        + LEM+     +L+ +  P++ +       I +  + +   +
Sbjct: 188 --------NLKNCNSPETV-LEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 203 ---------PDSLCQLRSLNYLSISEN-NFSCKLPLSIWNISSLEIISLHSNRFEGSLPL 252
                     + L  L ++         N SCK+ L+       + +S  +         
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 253 NIGFNIPNV-----NFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLS 307
           ++      V      +L          LP      +N + L +     +  ++       
Sbjct: 295 SMTLTPDEVKSLLLKYLDCR----PQDLPRE-VLTTNPRRLSI----IAESIRDGLATWD 345

Query: 308 NLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKIT-- 365
           N   +   K  L T   S L+ L      ++   ++   ++   VF       SA I   
Sbjct: 346 NWKHVNCDK--LTTIIESSLNVL----EPAEYRKMF---DRLS-VF-----PPSAHIPTI 390

Query: 366 VIGMGDNQISGTIPSEI------KNLVNINAFGVEYNQLTGTIPHAIGELK----NLQGL 415
           ++ +    +  +    +       +LV          + T +IP    ELK    N   L
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKVKLENEYAL 445

Query: 416 --ALVR--NSLRGTIPDTLG-----------------------NLTLLNRLFLGFNNLQG 448
             ++V   N  +    D L                         +TL   +FL F  L+ 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 449 NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSA 508
            +              R    + N  G  +   +  L+    + + +N    E  V    
Sbjct: 506 KI--------------RHDSTAWNASGSILNT-LQQLKFYKPY-ICDNDPKYERLV---- 545

Query: 509 CTTLEYLH 516
              L++L 
Sbjct: 546 NAILDFLP 553

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 72/433 (16%), Positives = 131/433 (30%), Gaps = 141/433 (32%)

Query: 287 VLDVYKNHFSGQVKIDF-----NRLSNLSRLF---LSKNN------LGTESTSDLDFLT- 331
           V D+ K+  S + +ID      + +S   RLF   LSK        +      +  FL  
Sbjct: 38  VQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 332 -LLTNCSQMEM---LYL-------NTNKFGGVF-------------LRS-IANL--SAKI 364
            + T   Q  M   +Y+       N N+   VF             LR  +  L  +  +
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 365 TVIGMGDNQISG--TIPSEI---KNLVNINAFGVEYNQLT-G--TIPHAIGELKNLQGLA 416
            + G+     SG   +  ++     +     F + +  L       P  +  L+ LQ L 
Sbjct: 154 LIDGVLG---SGKTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETV--LEMLQKLL 206

Query: 417 LVRNSLRGTIPDTLGNLTL--------LNRLFLGFNNLQGNVPSSL-------------- 454
              +    +  D   N+ L        L RL            + L              
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-----SKPYENCLLVLLNVQNAKAWNA 261

Query: 455 --GNCQNLMTLSR---LLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSN--------- 500
              +C+ L+T +R   + D         I L+  +   L   D  ++             
Sbjct: 262 FNLSCKILLT-TRFKQVTDFLSAATTTHISLD-HHSMTLTP-DEVKSLLLKYLDCRPQDL 318

Query: 501 --EI----PVTLS---------ACTTLEYLHLQGNSFSGSLPLSLKTLKS--IKEL--DL 541
             E+    P  LS           T   + H+  +  +  +  SL  L+    +++   L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 542 S--RNNLSGQIPKYLENLLFLAYLNLSYN---HFEGEVPRKGV-----FGNRTGIHLI-- 589
           S    +    IP     LL L + ++  +       ++ +  +       +   I  I  
Sbjct: 379 SVFPPSA--HIP---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 590 GNERLCGGLEELH 602
             +        LH
Sbjct: 434 ELKVKLENEYALH 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 8e-06
 Identities = 51/345 (14%), Positives = 98/345 (28%), Gaps = 104/345 (30%)

Query: 99  LSNVRHRNLIK---------IITVCSSI-DF-KGVDFKALIYEYMKCGSSED-------- 139
           L NV++              + T    + DF        +  ++     + D        
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 140 WMHQSNDKL--EA--GN---LGLI--------------QRLNLLKL-EMIDVGDNQLIGK 177
           ++      L  E    N   L +I              + +N  KL  +I+   N L  +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--E 367

Query: 178 FPDFIANFSAL----EAIDISANMLG-----------GRIPDSLCQLRSLNYLSISENNF 222
             ++   F  L     +  I   +L              + + L +  SL  +       
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSL--VEKQPKES 424

Query: 223 SCKLP---LSIWNISSLEIISLHSN-----RFEGSLPLN--------------IGFNIP- 259
           +  +P   L +  +      +LH +         +   +              IG ++  
Sbjct: 425 TISIPSIYLEL-KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 260 ---------------NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFN 304
                          +  FL     + + +   S S  + LQ L  YK +        + 
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYE 542

Query: 305 RLSNLSRLFLSKNNLGTESTSDLDFLTL-LTNCSQMEMLYLNTNK 348
           RL N    FL K       +   D L + L    + E ++   +K
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMA--EDEAIFEEAHK 585

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK---SFVTECEALSNVRH 104
            NF     IG+G F  VY+      G  VA+K + +     AK     + E + L  + H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 105 RNLIK 109
            N+IK
Sbjct: 92  PNVIK 96

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 64/433 (14%), Positives = 133/433 (30%), Gaps = 58/433 (13%)

Query: 150 AGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQL 209
             +   I+ L + +    +     L     +   + ++LE ++          P  L  +
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLH----ELAQHNTSLEVLNFYMTEFAKISPKDLETI 215

Query: 210 ----RSLNYLSISENNFS--CKLPLSIWNISSLEIISLHSNRFEGSLPLNIGF--NIPNV 261
               RSL  + + +           +  N+      SL+ +       +N+ F   +  +
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 262 NFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLG 320
               +G N     +P  F  A+ ++ LD+       +       +  NL  L        
Sbjct: 276 GLSYMGPN----EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN---- 327

Query: 321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS 380
                D     L   C Q++ L +      G   + + +    ++  G+        +  
Sbjct: 328 --VIGDRGLEVLAQYCKQLKRLRIE----RGADEQGMEDEEGLVSQRGLI------ALAQ 375

Query: 381 EIKNLVNINAFGVEYNQLTGTIPHAIGE-LKNLQGLALVRNSLRGTIPDTLGNLTLLNRL 439
             + L  +  +    + +T     +IG  LKNL    L               + L    
Sbjct: 376 GCQELEYMAVYV---SDITNESLESIGTYLKNLCDFRL---------------VLLDREE 417

Query: 440 FLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499
            +    L   V S L  C+ L   +      G L    +        N+    L     S
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFA-FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476

Query: 500 NE-IPVTLSACTTLEYLHLQGNSFS-GSLPLSLKTLKSIKELDLSRNNLSGQIPKYLE-- 555
           +E +      C  L+ L ++G  FS  ++  ++  L S++ L +     S      ++  
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536

Query: 556 -NLLFLAYLNLSY 567
                +  +    
Sbjct: 537 RPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 51/408 (12%), Positives = 116/408 (28%), Gaps = 50/408 (12%)

Query: 232 NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFT-GSLPH-SFSNASNLQVLD 289
             +   +I  +   +       I  N+  +  +   +   +   L   + + A +L+ L 
Sbjct: 85  RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144

Query: 290 VYK-NHFSGQVKIDF-NRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTN 347
           + K + F+    +        +  L + +++   +         L  + + +E+L     
Sbjct: 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD--GKWLHELAQHNTSLEVLNFYMT 202

Query: 348 KFGGV---FLRSIANLSAKITVIGMGDNQIS--GTIPSEIKNLVNINAFGVEYNQLTGTI 402
           +F  +    L +IA     +  + +GD +I           NL       +  +      
Sbjct: 203 EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262

Query: 403 PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN-VPSSLGNCQNLM 461
              +   + L  L L        +P        + +L L +  L+     + +  C NL 
Sbjct: 263 YMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL- 320

Query: 462 TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSA------------C 509
               +L+    +    + +     + L    +        +                  C
Sbjct: 321 ---EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377

Query: 510 TTLEYLHLQGNSFS----GSLPLSLKTLKSIKELDLSRNN------LSGQIPKYLENLLF 559
             LEY+ +  +  +     S+   LK L   + + L R        L   +   L     
Sbjct: 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437

Query: 560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCH 607
           L                        G+  IG  +    +  + L    
Sbjct: 438 LRRFAFYLR---------QGGLTDLGLSYIG--QYSPNVRWMLLGYVG 474

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 64/413 (15%), Positives = 130/413 (31%), Gaps = 55/413 (13%)

Query: 228 LSIWNISSLEIISLHSNRFEG--SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNA-SN 284
           +++    +     L   RF    SL L         N +      +        SN    
Sbjct: 55  VTMALCYTATPDRLSR-RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113

Query: 285 LQVLDVYKNHFS--GQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEML 342
           L+ +   +   S     ++   R  +L  L L          +    L+++T+C +++ L
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLD----KCSGFTTDGLLSIVTHCRKIKTL 169

Query: 343 YLNTNKF---GGVFLRSIANLSAKITVIGMGDNQISG-------TIPSEIKNLVNINAFG 392
            +  + F    G +L  +A  +  + V+     + +        TI    ++LV++    
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229

Query: 393 VEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRL-FLGFNNLQGN-V 450
            E  +L G    A     NL+       +    +P+   NL    +L  LG + +  N +
Sbjct: 230 FEILELVGFFKAA----ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

Query: 451 PSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE-VGNLRNLAEFDLSENHFSNEIPVTLSAC 509
           P        +    R LDL   LL        +    NL   +         + V    C
Sbjct: 286 PILFPFAAQI----RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341

Query: 510 TTLEYLHLQGNSFSGSLPLSLKTL------------KSIKELDLSRNNLSGQ----IPKY 553
             L+ L ++  +    +      +            + ++ + +  ++++ +    I  Y
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401

Query: 554 LENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC 606
           L+NL     + L          R        G+  +     C  L        
Sbjct: 402 LKNLCDFRLVLLDR------EERITDLPLDNGVRSLL--IGCKKLRRFAFYLR 446

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 47/341 (13%), Positives = 104/341 (30%), Gaps = 43/341 (12%)

Query: 303 FNRLSNLSRLFLSKNNLGTESTSDLD--FLTL----LTNCSQMEMLYLNTNKFGGVFLRS 356
           + ++ + +R  ++     T +   L   F  L    L    +  M  L    +GG     
Sbjct: 44  WFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPW 103

Query: 357 IANLSAKITVI--------GMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGE 408
           +  +S  +  +         + D  +     +   +L  +       +  T     +I  
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC--SGFTTDGLLSIVT 161

Query: 409 -LKNLQGLALVRNSLR-------GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG-NCQN 459
             + ++ L +  +S           +     +L +LN     F  +      ++  NC++
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQG 519
           L+++   +     L          NL       L+E+    E  + L     L  L L  
Sbjct: 222 LVSVK--VGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 520 NSFSGSLPLSLKTLKSIKELDLSRNNLSG-QIPKYLENLLFLAYLNLSYNHFEGEVPRKG 578
              +  +P+       I++LDL    L        ++    L  L       +       
Sbjct: 280 MGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD------- 331

Query: 579 VFGNRTGIHLIGNERLCGGLEELHLPSCHFGRPRITRITLL 619
                 G+ ++   + C  L+ L +      +       L+
Sbjct: 332 -----RGLEVLA--QYCKQLKRLRIERGADEQGMEDEEGLV 365

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHR 105
             +S    IG G    V++  L E     A+K +NL++       S+  E   L+ ++  
Sbjct: 28  RIYSILKQIGSGGSSKVFQV-LNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQH 86

Query: 106 N 106
           +
Sbjct: 87  S 87

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 52/292 (17%), Positives = 97/292 (33%), Gaps = 45/292 (15%)

Query: 307 SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL----SA 362
             ++ L LS NNL + ST +L         + +  L L+ N  G      +  +     A
Sbjct: 22  HGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 363 KITVIGMGDNQISGTIPSEI-KNLVNINA----FGVEYNQLTGTIPHAIGEL-----KNL 412
            +T + +  N +S     E+ K L  I        + +N  +        +       ++
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140

Query: 413 QGLALVRNSLRGT----IPDTLGNL-TLLNRLFLGFNNLQGNVPSSLG-----NCQNLMT 462
             L L  N L       +   L  +   +N L L  NNL     + L         ++  
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV-- 198

Query: 463 LSRLLDLSGNLLG--GSIPLE---VGNLRNLAEFDLSENHFSNE----IPVTLSACTTLE 513
               LDLS NLLG      L         ++   +L  N         + +   +   L+
Sbjct: 199 --TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 514 YLHLQGNSFSG-------SLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558
            ++L  +           +L  +   ++ I  +D +   +       + NL+
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLI 308

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 44/311 (14%), Positives = 99/311 (31%), Gaps = 48/311 (15%)

Query: 280 SNASNLQVLDVYKNHFSGQVKIDFNRL-----SNLSRLFLSKNNLGTESTSDLDFLTLLT 334
           +  +++  L++  N    +   +  ++     +N++ L LS N L  +S+ +L   TL  
Sbjct: 48  NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL-VKTLAA 106

Query: 335 NCSQMEMLYLNTNKFGGVFLRSIA----NLSAKITVIGMGDNQISGT--------IPSEI 382
               + +L L  N F             NL A IT + +  N +           + +  
Sbjct: 107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166

Query: 383 KNLVNINAFGVEYNQLTGTIPHAIGEL-----KNLQGLALVRNSLRGT----IPDTL-GN 432
            N+ ++N   +  N L       + +       ++  L L  N L       +       
Sbjct: 167 ANVNSLN---LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223

Query: 433 LTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGG-------SIPLEVGNL 485
              +  L L  N L G    +L   ++ +   + + L  +++         ++     N+
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283

Query: 486 RNLAEFDLSENHFSNEIPVTLSA-----CTTLEYLHLQGNSFS-----GSLPLSLKTLKS 535
           + +   D +         + +S          +   L            +    L     
Sbjct: 284 QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDE 343

Query: 536 IKELDLSRNNL 546
           ++E   +   L
Sbjct: 344 LRESIQTCKPL 354

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 1/104 (0%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA-KSFVTECEALSNV 102
           S+   +F     +G+G FG V++ K        A+K + L  +  A +  + E +AL+ +
Sbjct: 2   SRYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL 61

Query: 103 RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSND 146
            H  +++          +    +          +       S  
Sbjct: 62  EHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPM 105

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRN 106
             IG G    V++  L E     A+K +NL++       S+  E   L+ ++  +
Sbjct: 15  KQIGSGGSSKVFQV-LNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 68

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G G+F  V+  K   TG   A+K +         S   E   L  ++H N++ + 
Sbjct: 17  LGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLE 72

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G G+FG V++     TG     K +N        +   E   ++ + H  LI +     
Sbjct: 59  LGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDA-- 116

Query: 116 SIDFKGVDFKALIYEYMKCG 135
              F+      LI E++  G
Sbjct: 117 ---FEDKYEMVLILEFLSGG 133

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRH 104
           ++F     +G+G FG VY  +  +    +A+KV+    L+++G       E E  S++RH
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73

Query: 105 RNLIKI 110
            N++++
Sbjct: 74  PNILRM 79

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRH 104
            +F     +G+G FG VY  +  ++   +A+KV+    L++ G       E E  S++RH
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68

Query: 105 RNLIKIITV 113
            N++++   
Sbjct: 69  PNILRLYGY 77

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 21/133 (15%)

Query: 29  LPMEQQFPMVSYADLSK---ATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKV 80
           LP+++    + Y D SK     +       +G+G+FG V +          T  TVAVK+
Sbjct: 1   LPLDEHCERLPY-DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKM 59

Query: 81  MNLKQKGA----AKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCG 135
           +    +GA     ++ ++E + L ++  H N++ ++  C+      +    +I E+ K G
Sbjct: 60  LK---EGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLM----VIVEFCKFG 112

Query: 136 SSEDWMHQSNDKL 148
           +   ++    ++ 
Sbjct: 113 NLSTYLRSKRNEF 125

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG G+FG     +   T   VAVK +  +     ++   E     ++RH N+++   V  
Sbjct: 28  IGSGNFGVARLMRDKLTKELVAVKYIE-RGAAIDENVQREIINHRSLRHPNIVRFKEVIL 86

Query: 116 SIDFKGVDFKALIY---EYMKCG 135
           +           +    EY   G
Sbjct: 87  T--------PTHLAIIMEYASGG 101

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRHRNLIKIIT 112
           +G+GSF  VY+ +   TG  VA+K+++   + + G  +    E +    ++H +++++  
Sbjct: 19  LGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYN 78

Query: 113 V 113
            
Sbjct: 79  Y 79

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 49  NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLI 108
             S + ++G G FG V+K +   TG  +A K++  +     +    E   ++ + H NLI
Sbjct: 90  TVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLI 149

Query: 109 KIITVCSSIDFKGVDFKALIYEYMKCG 135
           ++        F+  +   L+ EY+  G
Sbjct: 150 QLYDA-----FESKNDIVLVMEYVDGG 171

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 31  MEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK 90
           M +Q+  V      +  + +     IGQG+FG V+K +  +TG  VA+K + ++     +
Sbjct: 1   MAKQYDSVECPFCDEV-SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMEN--EKE 57

Query: 91  SF-VT---ECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIY---EYM 132
            F +T   E + L  ++H N++ +I +C +        K  IY   ++ 
Sbjct: 58  GFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFC 106

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 49.9 bits (120), Expect = 8e-07
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRHRNLIKIIT 112
           +G G+FG V  G+   TG  VAVK++N   ++          E + L   RH ++IK+  
Sbjct: 19  LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQ 78

Query: 113 VCSSIDFKGVDFKALIY---EYMKCG 135
           V S+            +   EY+  G
Sbjct: 79  VIST--------PTDFFMVMEYVSGG 96

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA--KSFVTECEALSNVRHRNLIK 109
            IG GS+G   K +    G  +  K ++      A  +  V+E   L  ++H N+++
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVR 69

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 49.9 bits (120), Expect = 9e-07
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVT-ECEALSNVRHRNLIKIITVC 114
           +G+G++G V       T   VAVK++++K+       +  E      + H N++K     
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74

Query: 115 SSIDFKGVDFKALIY---EYMKCG 135
                       + Y   EY   G
Sbjct: 75  RE--------GNIQYLFLEYCSGG 90

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 18  RRKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVA 77
           R     + +  + + ++   V Y +  +  +  +    +G+GSFG V++ K  +TG   A
Sbjct: 29  RLGPETEDNEGVLLTEKLKPVDY-EYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCA 87

Query: 78  VKVMNLKQKGAAKSFVTECEALSNVRHRNLIK 109
           VK + L+        V E  A + +    ++ 
Sbjct: 88  VKKVRLE-----VFRVEELVACAGLSSPRIVP 114

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 21/131 (16%)

Query: 18  RRKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVA 77
             +  ++    L  +Q+   +   D  K        + +G G+ G V+K     +G  +A
Sbjct: 10  DEQQRKRLEAFLTQKQKVGELKDDDFEKI-------SELGAGNGGVVFKVSHKPSGLVMA 62

Query: 78  VKVMNLKQKGAA-KSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA----LIYEYM 132
            K+++L+ K A     + E + L       ++          F G  +      +  E+M
Sbjct: 63  RKLIHLEIKPAIRNQIIRELQVLHECNSPYIVG---------FYGAFYSDGEISICMEHM 113

Query: 133 KCGSSEDWMHQ 143
             GS +  + +
Sbjct: 114 DGGSLDQVLKK 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 13/133 (9%)

Query: 438 RLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENH 497
            L      ++  + ++L   +      + L LS N +     L    + NL    L  N 
Sbjct: 29  ELHGMIPPIE-KMDATLSTLKAC----KHLALSTNNIEKISSLS--GMENLRILSLGRNL 81

Query: 498 FSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS--GQIPKYLE 555
              +I    +   TLE L +  N  + SL   ++ L +++ L +S N ++  G+I   L 
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEI-DKLA 137

Query: 556 NLLFLAYLNLSYN 568
            L  L  L L+ N
Sbjct: 138 ALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 13/124 (10%)

Query: 225 KLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASN 284
           K+  ++  + + + ++L +N  E    L+    + N+  LS+G+N     + +  + A  
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKISSLS---GMENLRILSLGRNLIK-KIENLDAVADT 94

Query: 285 LQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLY 343
           L+ L +  N  +    +    +L NL  L++S N +     ++   +  L    ++E L 
Sbjct: 95  LEELWISYNQIA---SLSGIEKLVNLRVLYMSNNKI-----TNWGEIDKLAALDKLEDLL 146

Query: 344 LNTN 347
           L  N
Sbjct: 147 LAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 501 EIPVTLSACTTLEYLHLQGNSFS---GSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL 557
           ++  TLS     ++L L  N+           L  +++++ L L RN +  +I       
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIK-KIENLDAVA 92

Query: 558 LFLAYLNLSYNHFE 571
             L  L +SYN   
Sbjct: 93  DTLEELWISYNQIA 106

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVT-ECEALSNVRHRNLIKIITVC 114
           +G+G++G V       T   VAVK++++K+       +  E      + H N++K     
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74

Query: 115 SSIDFKGVDFKALIY---EYMKCG 135
                       + Y   EY   G
Sbjct: 75  RE--------GNIQYLFLEYCSGG 90

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 28/120 (23%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 452 SSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPV--TLSAC 509
           +   N        R LDL G  +   I      L      D S+N    EI         
Sbjct: 13  AQYTNAVRD----RELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLL 63

Query: 510 TTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSG-QIPKYLENLLFLAYLNLSYN 568
             L+ L +  N          + L  + EL L+ N+L        L +L  L YL +  N
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 27/132 (20%), Positives = 43/132 (32%), Gaps = 9/132 (6%)

Query: 430 LGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLA 489
             N      L     +L+G     + N    +     +D S N +          LR L 
Sbjct: 15  YTNAVRDREL-----DLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLK 67

Query: 490 EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLS-LKTLKSIKELDLSRNNLSG 548
              ++ N           A   L  L L  NS      L  L +LKS+  L + RN ++ 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT- 126

Query: 549 QIPKYLENLLFL 560
               Y   +++ 
Sbjct: 127 NKKHYRLYVIYK 138

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 5/105 (4%)

Query: 467 LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSL 526
           + L+  L+  +      N     E DL        I    +     + +    N     L
Sbjct: 2   VKLTAELIEQAAQYT--NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 527 PLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
                 L+ +K L ++ N +        + L  L  L L+ N   
Sbjct: 58  D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVT---------ECEALSNVRHRN 106
           +G G+FGFV+     E    V VK +  K+K     ++          E   LS V H N
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIK-KEKVLEDCWIEDPKLGKVTLEIAILSRVEHAN 90

Query: 107 LIKIITV 113
           +IK++ +
Sbjct: 91  IIKVLDI 97

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 2e-06
 Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 18/159 (11%)

Query: 417 LVRNSLRGTIPDTLGNLTL--LNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL-LDLSGNL 473
           L    ++GT   ++G      L  L +    L  +V   +    +L  L +L L +    
Sbjct: 174 LNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS-DLPNLEKLVLYVGVED 232

Query: 474 LGGSIP-------LEVGNLRNLAEFDLSENHFSNEIPVTLSAC---TTLEYLHLQGNSFS 523
            G                  NL    + +    N +            LE + +     +
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292

Query: 524 GS----LPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558
                 L   +  +K +K +++  N LS ++ K L+  L
Sbjct: 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 3e-05
 Identities = 19/127 (14%), Positives = 48/127 (37%), Gaps = 18/127 (14%)

Query: 465 RLLDLSGNLLGGSIPLEVG--NLRNLAEFDL---SENHFSNEIPVTLSA------CTTLE 513
           + L++    L  S+  ++   +L NL +  L    E++  +                 L+
Sbjct: 196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255

Query: 514 YLHLQGNSFSGSLPLSL---KTLKSIKELDLSRNNLSG----QIPKYLENLLFLAYLNLS 566
           +L +        +         L  ++ +D+S   L+      +  +++ +  L ++N+ 
Sbjct: 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315

Query: 567 YNHFEGE 573
           YN+   E
Sbjct: 316 YNYLSDE 322

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 16/87 (18%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVT----ECEALSNVRHRNLIKII 111
           +G G+FG V  GK   TG  VAVK++N +QK  +   V     E + L   RH ++IK+ 
Sbjct: 24  LGVGTFGKVKVGKHELTGHKVAVKILN-RQKIRSLDVVGKIRREIQNLKLFRHPHIIKLY 82

Query: 112 TVCSSIDFKGVDFKALIY---EYMKCG 135
            V S+         + I+   EY+  G
Sbjct: 83  QVIST--------PSDIFMVMEYVSGG 101

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 9/140 (6%)

Query: 234 SSLEIISLHSNRFEGSLPLNIGF-NIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYK 292
                + L++N F   L     F  +P +  ++   N  T     +F  AS +  + +  
Sbjct: 32  QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 293 NHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV 352
           N         F  L +L  L L  N +          L+ +       +L L  N+   V
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR------LLSLYDNQITTV 144

Query: 353 FLRSIANLSAKITVIGMGDN 372
              +   L   ++ + +  N
Sbjct: 145 APGAFDTLH-SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 8/148 (5%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIPHAIGELKN 411
           L  I  ++      + + +N+ +    + I K L  +       N++T     A      
Sbjct: 23  LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 412 LQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSG 471
           +  + L  N L          L  L  L L  N +      S     ++    RLL L  
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV----RLLSLYD 138

Query: 472 NLLGGSIPLEV-GNLRNLAEFDLSENHF 498
           N +  ++       L +L+  +L  N F
Sbjct: 139 NQI-TTVAPGAFDTLHSLSTLNLLANPF 165

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 44/167 (26%), Positives = 62/167 (37%), Gaps = 41/167 (24%)

Query: 283 SNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEML 342
           +N Q+L ++ N  +      F+ L NL  L+L  N LG       D LT LT       L
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV------L 93

Query: 343 YLNTNKF----GGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL 398
            L TN+       VF R                             LV++    +  N+L
Sbjct: 94  DLGTNQLTVLPSAVFDR-----------------------------LVHLKELFMCCNKL 124

Query: 399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNN 445
           T  +P  I  L +L  LAL +N L+         L+ L   +L F N
Sbjct: 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL-FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 17/145 (11%)

Query: 358 ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAI-GELKNLQGLA 416
           A +     ++ + DNQI+   P    +L+N+    +  NQL   +P  +   L  L  L 
Sbjct: 36  AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94

Query: 417 LVRNSLRGTIP----DTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
           L  N L   +P    D L +L     LF+  N L   +P  +    +L      L L  N
Sbjct: 95  LGTNQLT-VLPSAVFDRLVHLK---ELFMCCNKLT-ELPRGIERLTHLTH----LALDQN 145

Query: 473 LLGGSIPLEV-GNLRNLAEFDLSEN 496
            L  SIP      L +L    L  N
Sbjct: 146 QL-KSIPHGAFDRLSSLTHAYLFGN 169

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 18/113 (15%)

Query: 35  FPMVSYADLSKATNNFSA----SNMIGQGSFGFVYKGKLGETGTTVAVKVMN-------- 82
           F  ++  D S            S  +G G+ G V      +T   VA+++++        
Sbjct: 118 FFDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGS 177

Query: 83  LKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCG 135
            ++   A +  TE E L  + H  +IKI     + D+       ++ E M+ G
Sbjct: 178 AREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDY------YIVLELMEGG 224

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHR 105
             +     IG+GS+G V+K +  +TG  VA+K     +      K  + E   L  ++H 
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHP 62

Query: 106 NLIKIITVCSSIDFKGVDFKALIYEYM 132
           NL+ ++ V      K      L++EY 
Sbjct: 63  NLVNLLEVFRR---KRRLH--LVFEYC 84

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHR 105
             +    ++G+GS+G V K +  +TG  VA+K        K   K  + E + L  +RH 
Sbjct: 25  EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHE 84

Query: 106 NLIKIITVCSSIDFKGVDFKALIYEYM 132
           NL+ ++ VC     K   +  L++E++
Sbjct: 85  NLVNLLEVCKK---KKRWY--LVFEFV 106

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-GAAKSFVTECEALSNVRHRN 106
             +   + +G+G++  VYKGK   T   VA+K + L+ + GA  + + E   L +++H N
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN 61

Query: 107 ---LIKIITVCSSIDFKGVDFKALIYEYM 132
              L  II    S+         L++EY+
Sbjct: 62  IVTLHDIIHTEKSL--------TLVFEYL 82

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKI 110
           +G G+FG V++     TG   A K +    +   ++   E + +S +RH  L+ +
Sbjct: 165 LGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNL 219

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 30/130 (23%), Positives = 43/130 (33%), Gaps = 10/130 (7%)

Query: 419 RNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSI 478
             S  G I         L  L L    L      S+ N   L  L +L +LS N + G +
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLPKLKKL-ELSENRIFGGL 87

Query: 479 PLEVGNLRNLAEFDLSENHFSNEIPVT-LSACTTLEYLHLQGN---SFSGSLPLSLKTLK 534
            +    L NL   +LS N   +   +  L     L+ L L      + +       K L 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147

Query: 535 SIKELDLSRN 544
            +  LD    
Sbjct: 148 QLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 484 NLRNLAEFDLSENHFSN-EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLS 542
               + E  L     ++ +I    +    LE+L L       S+  +L  L  +K+L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELS 79

Query: 543 RNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
            N + G +    E L  L +LNLS N  +
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 21  HTQKSSRTLPMEQQFPMVSYADLSKAT---NNFSASNMIGQGSFGFVYKGKLGETGTTVA 77
           H      TL  + Q P       + +    + +     +G+G++G VYK     T  TVA
Sbjct: 4   HHHHHMGTLEAQTQGPGSMSVSAAPSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVA 63

Query: 78  VKVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM 132
           +K + L+ +  G   + + E   L  ++HRN+I++ +V             LI+EY 
Sbjct: 64  IKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHH---NHRLH--LIFEYA 115

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 51/452 (11%), Positives = 135/452 (29%), Gaps = 42/452 (9%)

Query: 152 NLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIA-NFSALEAIDISANMLGGRIPDSLCQL- 209
           ++ L  + +     ++  G    +  + + ++ +++ LE I +        + D   +L 
Sbjct: 70  SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK----RMVVTDDCLELI 125

Query: 210 ----RSLNYLSISE-NNFSCKLPLSI-WNISSLEIISLHSNRFEGSLPLNIGFNIPNVNF 263
               ++   L +S    FS     +I     +L+ + L  +  +      +         
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185

Query: 264 L-----SVGQNNFT-GSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN 317
           L     S   +  +  +L    +   NL+ L + +     ++     R   L  L     
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245

Query: 318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT 377
                          L+ C ++  L    +     +L ++ ++ +++T + +    +   
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWD-AVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 378 -IPSEIKNLVNINAFGVEYNQLTGTIPHAIGE-LKNLQGLALVRNSLRGTIPDT------ 429
            +   +     +    V  + +       +    K+L+ L +  +      P+       
Sbjct: 305 DLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 430 ----LGNLTLLNRLFLGFNNLQGNVPSSLG-NCQNLMTLS-------RLLDLSGNLLGGS 477
                     L  +      +      ++  N  N+               L+   L   
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423

Query: 478 IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSG-SLPLSLKTLKSI 536
               V + ++L    LS            +    +E L +     S   +   L    S+
Sbjct: 424 FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483

Query: 537 KELDLSRNNLSGQ-IPKYLENLLFLAYLNLSY 567
           ++L++       + +      L  +  L +S 
Sbjct: 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 51/407 (12%), Positives = 119/407 (29%), Gaps = 40/407 (9%)

Query: 228 LSIWNISSLEIISLHSNRFEG--SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNA-SN 284
           + I N  ++   ++   RF    S+ L    +  + N +  G   +      + S++ + 
Sbjct: 48  VFIGNCYAVSPATVIR-RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106

Query: 285 LQVLDVYKNHFS-GQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLY 343
           L+ + + +   +   +++      N   L LS      E  S      +   C  ++ L 
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS----SCEGFSTDGLAAIAATCRNLKELD 162

Query: 344 LNTNKFGGVFLRSIANLSAKIT-----VIGMGDNQISGT-IPSEIKNLVNINAFGVEYNQ 397
           L  +    V    +++     T      I    +++S + +   +    N+ +  +    
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222

Query: 398 LTGTIPHAIGELKNLQGLAL------VRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP 451
               +   +     L+ L        VR  +   +   L     L  L   ++ +   +P
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282

Query: 452 SSLGNCQNLMTLSRLLDLSG-NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT 510
           +    C  L      L+LS   +    +   +     L    + +      + V  S C 
Sbjct: 283 AVYSVCSRL----TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338

Query: 511 TLEYLHLQGNSFSGSLPLSLKT----------LKSIKELDLSRNNLSGQIPKYL-ENLLF 559
            L  L +  +      P    T             ++ +      ++      +  N   
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398

Query: 560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC 606
           +    L     +          +     ++     C  L  L L   
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIV---EHCKDLRRLSLSGL 442

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 49/352 (13%), Positives = 98/352 (27%), Gaps = 52/352 (14%)

Query: 303 FNRLSNLSRLFLSKNNLGTESTSDLDF---------LTLLTNCSQMEMLYLNTNKFGGVF 353
           +  +    R  +   N    S + +           L    + +   ++      +   +
Sbjct: 37  WYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPW 96

Query: 354 LRSIANLSAKITVIGMGDNQIS----GTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGE- 408
           + ++++    +  I +    ++      I    KN   +          +     AI   
Sbjct: 97  IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC--EGFSTDGLAAIAAT 154

Query: 409 LKNLQGLALVRNSLRGTIPDTLGNLTLLNRLF--LGFNNLQGNVPSS-----LGNCQNLM 461
            +NL+ L L  + +       L +          L  + L   V  S     +  C NL 
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214

Query: 462 TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLS------ENHFSNEIPVTLSACTTLEYL 515
           +L     L+  +    +   +     L E               + + V LS C  L  L
Sbjct: 215 SL----KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 516 HLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQ-IPKYLENLLFLAYLNLSYNHFEGEV 574
               ++    LP        +  L+LS   +    + K L     L  L +         
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY------ 324

Query: 575 PRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHF----GRPRITRITLLKVV 622
                     G+ ++     C  L EL +             +T   L+ V 
Sbjct: 325 ------IEDAGLEVLA--STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 49/410 (11%), Positives = 114/410 (27%), Gaps = 54/410 (13%)

Query: 232 NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFT-GSLPHSFSNASNLQVLDV 290
           + +   ++      +       +  +   +  + + +   T   L     +  N +VL +
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 291 YK-NHFSGQ-VKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLN--T 346
                FS   +        NL  L L ++++  +  S           + +  L ++   
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDV--DDVSGHWLSHFPDTYTSLVSLNISCLA 195

Query: 347 NKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEY------NQLTG 400
           ++     L  +      +  + +        + + ++    +   G           +  
Sbjct: 196 SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255

Query: 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN-VPSSLGNCQN 459
            +  A+   K L+ L+   +++   +P      + L  L L +  +Q   +   L  C  
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315

Query: 460 LMTL---SRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVT-------LSAC 509
           L  L     + D    +L  +      +LR L  F          + +T          C
Sbjct: 316 LQRLWVLDYIEDAGLEVLASTCK----DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371

Query: 510 TTLEYLHLQGNSFSG-SLPLSLKTLKSIKELDLSRNNLSGQ-----------IPKYLENL 557
             LE +       +  +L    +   ++    L                       +E+ 
Sbjct: 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431

Query: 558 LFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCH 607
             L  L+LS                      IG       +E L +    
Sbjct: 432 KDLRRLSLSGLL------------TDKVFEYIG--TYAKKMEMLSVAFAG 467

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA--KSFVTECEALSN 101
           S+ T  F     IG G FG V+K      G   A+K       G+   ++ + E  A + 
Sbjct: 7   SRYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAV 66

Query: 102 V-RHRNLIK 109
           + +H ++++
Sbjct: 67  LGQHSHVVR 75

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 10/100 (10%)

Query: 42  DLSKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQKGAAKSFVTEC 96
           +    +      +++G+G+F  VY+   G     +      +KV                
Sbjct: 59  EFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLM 118

Query: 97  EALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGS 136
           E L        +K  +          +   L+ E    G+
Sbjct: 119 ERLKPSMQHMFMKFYSA-----HLFQNGSVLVGELYSYGT 153

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMN--------LKQKGAAKSFVTECEALSNVRHRNL 107
           +G G+ G V      +T   VA+K+++         ++   A +  TE E L  + H  +
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCG 135
           IKI     + D+       ++ E M+ G
Sbjct: 78  IKIKNFFDAEDY------YIVLELMEGG 99

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKI 110
           +G+G FG V++     +  T   K +   +         E   L+  RHRN++ +
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVK-VKGTDQVLVKKEISILNIARHRNILHL 66

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL-KQKGAAKSF-------VTE 95
           S AT+ +     IG G++G VYK +   +G  VA+K + +    G            V  
Sbjct: 5   SMATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVAL 64

Query: 96  CEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM 132
              L    H N+++++ VC++          L++E++
Sbjct: 65  LRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHV 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 11/138 (7%)

Query: 408 ELKNLQGLAL-VRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL 466
              +++ L L    S  G +         L  L      L     +S+ N   L  L + 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKL-KK 68

Query: 467 LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSN-EIPVTLSACTTLEYLHLQGN---SF 522
           L+LS N + G + +      NL   +LS N   +      L     L+ L L      + 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 523 SGSLPLSLKTLKSIKELD 540
           +       K L  +  LD
Sbjct: 129 NDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 484 NLRNLAEFDLSENHFSN-EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLS 542
              ++ E  L  +  +  ++         LE+L       + S+  +L  L  +K+L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELS 72

Query: 543 RNNLSGQIPKYLENLLFLAYLNLSYNHFE 571
            N +SG +    E    L +LNLS N  +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 456 NCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYL 515
              ++  L   LD S +  G  +         L          +  I   L     L+ L
Sbjct: 15  TPSDVKELV--LDNSRSNEG-KLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 516 HLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSG-QIPKYLENLLFLAYLNLSYN 568
            L  N  SG L +  +   ++  L+LS N +      + L+ L  L  L+L   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 232 NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVY 291
             S ++ + L ++R        +      + FLS      T S+ +     + L+ L++ 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 292 KNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTN 347
            N  SG +++   +  NL+ L LS N +      DL  +  L     ++ L L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI-----KDLSTIEPLKKLENLKSLDLFNC 123

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN-LKQKGAAKSFVTECEALSNVRHR 105
            + F     +G G+FG V+  +   +G    +K +N  + +   +    E E L ++ H 
Sbjct: 21  DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHP 80

Query: 106 NLIKI 110
           N+IKI
Sbjct: 81  NIIKI 85

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+GSFG V   K   TG   AVKV++   +KQK   +S + E + L  + H N++K+ 
Sbjct: 34  LGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLY 92

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG+GS+G V       T    A K +          F  E E + ++ H N+I++     
Sbjct: 17  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYET-- 74

Query: 116 SIDFKGVDFKALIYEYMKCG 135
              F+      L+ E    G
Sbjct: 75  ---FEDNTDIYLVMELCTGG 91

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 15/86 (17%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRHRNLIKIIT 112
           IG+G+F  V   +   TG  VA+K+++   L      K F  E   +  + H N++K+  
Sbjct: 23  IGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLF-REVRIMKILNHPNIVKLFE 81

Query: 113 VCSSIDFKGVDFKALIY---EYMKCG 135
           V  +        +  +Y   EY   G
Sbjct: 82  VIET--------EKTLYLIMEYASGG 99

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVT----ECEALSNVRHRNLIKII 111
           +G+GSFG V      +T   VA+K ++ +Q             E   L  +RH ++IK+ 
Sbjct: 17  LGEGSFGKVKLATHYKTQQKVALKFIS-RQLLKKSDMHMRVEREISYLKLLRHPHIIKLY 75

Query: 112 TVCSS 116
            V ++
Sbjct: 76  DVITT 80

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 18  RRKHTQKSSRTLP-MEQQFPMVSYADLSKATNNFSA----SNMIGQGSFGFVYKGKLGET 72
              H   S R     +          ++    + S        +G G++G V   +   T
Sbjct: 2   HHHHHHSSGRENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVT 61

Query: 73  GTTVAVKVMNLKQKGAAK--SFVTECEALSNVRHRNLIKII 111
               A+K++       +     + E   L  + H N++K+ 
Sbjct: 62  HVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLY 102

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 30  PMEQQFPMVSYADLSKATNNFSASNM-IGQGSFGFVYKG--KLGETGTTVAVKVMNLKQK 86
            M+  F +   ++  +  + F      +G+G++G VYK   K G+     A+K   ++  
Sbjct: 2   KMDYDFKVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALK--QIEGT 59

Query: 87  GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM 132
           G + S   E   L  ++H N+I +  V  S   + V    L+++Y 
Sbjct: 60  GISMSACREIALLRELKHPNVISLQKVFLSHADRKV---WLLFDYA 102

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN 106
              ++   +IG GSFG V++ KL E+   VA+K    K     +    E + +  V+H N
Sbjct: 39  EIAYTNCKVIGNGSFGVVFQAKLVESD-EVAIK----KVLQDKRFKNRELQIMRIVKHPN 93

Query: 107 LIKIITV-CSSIDFKGVDFKALIYEYM 132
           ++ +     S+ D K   F  L+ EY+
Sbjct: 94  VVDLKAFFYSNGDKKDEVFLNLVLEYV 120

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 11/86 (12%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFV------TECEALSNVRHRNLIK 109
           +G G F  V K +   TG   A K +  ++  +++  V       E   L  ++H N+I 
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCG 135
           +  V     ++      LI E +  G
Sbjct: 79  LHEV-----YENKTDVILILELVAGG 99

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKII 111
           +G+GSFG V K K   T    AVKV+N          + + E E L  + H N++K+ 
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLF 87

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 46  ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-GAAKSFVTECEALSNVRH 104
           +++ F     +G G++  VYKG    TG  VA+K + L  + G   + + E   +  ++H
Sbjct: 3   SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKH 62

Query: 105 RNLIKIITVCSSIDFKGVDFKALIYEYM 132
            N++++  V  +   +      L++E+M
Sbjct: 63  ENIVRLYDVIHT---ENKLT--LVFEFM 85

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 25  SSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK 84
           S+      Q F + S  +L +         ++GQ       +    ETG +  V V    
Sbjct: 52  STSLWNTGQPFRVES--ELGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFT 109

Query: 85  QKGAAKSFVTECEALSNVRHRNLIK 109
           ++  + +     E +  +R    IK
Sbjct: 110 ERPPSNAIKQMKEEVLRLRLLRGIK 134

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA--KSFVTECEALSNVRH 104
              ++   M+G+GSFG V K K   T    AVKV+N          + + E E L  + H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 105 RNLIKI 110
            N++K+
Sbjct: 81  PNIMKL 86

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 10/103 (9%)

Query: 38  VSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSF 92
                L +    +     IGQGS+G V      +T    A+K+MN  +         +  
Sbjct: 16  FQGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERI 75

Query: 93  VTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCG 135
            TE   +  + H N+ ++  V     ++   +  L+ E    G
Sbjct: 76  KTEVRLMKKLHHPNIARLYEV-----YEDEQYICLVMELCHGG 113

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVK-VMNLKQKGAAKSFVTECEALSNVRHR 105
           +  +S    +G GSFG V +    E+G   A+K V+   +         E + +  + H 
Sbjct: 6   SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYK-----NRELDIMKVLDHV 60

Query: 106 NLIKIITV 113
           N+IK++  
Sbjct: 61  NIIKLVDY 68

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK---SFVTECEALSNVRHRNLIKIIT 112
           +G+G+F  V +     TG   A K++N  +K +A+       E      ++H N++++  
Sbjct: 14  LGKGAFSVVRRCVHKTTGLEFAAKIIN-TKKLSARDFQKLEREARICRKLQHPNIVRLHD 72

Query: 113 VCSSIDFKGVDFKALIYEYMKCG 135
                  +   F  L+++ +  G
Sbjct: 73  S-----IQEESFHYLVFDLVTGG 90

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 11/86 (12%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFV------TECEALSNVRHRNLIK 109
           +G G F  V K +   TG   A K +  ++  +++  V       E   L  +RH N+I 
Sbjct: 13  LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIIT 72

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCG 135
           +  +     F+      LI E +  G
Sbjct: 73  LHDI-----FENKTDVVLILELVSGG 93

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFV------TECEALSNVRHRNLIK 109
           +G G F  V K +   TG   A K +  +Q  A++  V       E   L  V H N+I 
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCG 135
           +  V     ++      LI E +  G
Sbjct: 80  LHDV-----YENRTDVVLILELVSGG 100

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA--KSFVTECEALSN 101
           S    +F   + +G GS+G V+K +  E G   AVK      +G       + E  +   
Sbjct: 53  SFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEK 112

Query: 102 V-RHRNLIK 109
           V +H   ++
Sbjct: 113 VGQHPCCVR 121

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNL--KQKGAAKSFVTECEALSNVRH 104
            + +   ++IG GS+G V +         VA+K +    +     K  + E   L+ + H
Sbjct: 52  PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNH 111

Query: 105 RNLIKIITVCSSIDFKGVDFKA--LIYEYM 132
            +++K++ +    D +   F    ++ E  
Sbjct: 112 DHVVKVLDIVIPKDVE--KFDELYVVLEIA 139

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVT------ECEALSNVRHRNLIK 109
           IG+G F  V +    ETG   AVK+++   K  +   ++      E      ++H ++++
Sbjct: 32  IGKGPFSVVRRCINRETGQQFAVKIVD-VAKFTSSPGLSTEDLKREASICHMLKHPHIVE 90

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCG 135
           ++   SS          +++E+M   
Sbjct: 91  LLETYSS-----DGMLYMVFEFMDGA 111

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFV-TECEALSNVR-HRNLIKIIT 112
           ++G+G+   V       T    AVK++  KQ G  +S V  E E L   + HRN++++I 
Sbjct: 20  VLGEGAHARVQTCINLITSQEYAVKIIE-KQPGHIRSRVFREVEMLYQCQGHRNVLELIE 78

Query: 113 VCSSIDFKGVDFKALIYEYMKCGS 136
                 F+  D   L++E M+ GS
Sbjct: 79  F-----FEEEDRFYLVFEKMRGGS 97

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFV------TECEALSNVRHRNLIK 109
           +G G F  V K +   TG   A K +  +Q  A++  V       E   L  V H N+I 
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIIT 79

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCG 135
           +  V     ++      LI E +  G
Sbjct: 80  LHDV-----YENRTDVVLILELVSGG 100

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 19/122 (15%)

Query: 257 NIP-NVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLS 315
            IP +V  L +  N FT  +P   SN  +L ++D+  N  S      F+ ++ L  L LS
Sbjct: 28  GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86

Query: 316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI-----ANLSAKITVIGMG 370
            N L        D L  L       +L L+ N      +  +      +LS  ++ + +G
Sbjct: 87  YNRLRCIPPRTFDGLKSLR------LLSLHGND-----ISVVPEGAFNDLS-ALSHLAIG 134

Query: 371 DN 372
            N
Sbjct: 135 AN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)

Query: 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN 437
           IP ++  L       ++ NQ T  +P  +   K+L  + L  N +      +  N+T L 
Sbjct: 29  IPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 438 RLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP 479
            L L +N L+  +P        L +L RLL L GN +   +P
Sbjct: 82  TLILSYNRLR-CIPP--RTFDGLKSL-RLLSLHGNDI-SVVP 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           L+ +   +   +T + +  NQ +  +P E+ N  ++    +  N+++     +   +  L
Sbjct: 22  LKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 413 QGLALVRNSLRGTIP----DTLGNLTLLNRLFLGFNNLQ 447
             L L  N LR  IP    D L +L LL+   L  N++ 
Sbjct: 81  LTLILSYNRLR-CIPPRTFDGLKSLRLLS---LHGNDIS 115

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK---SFVTECEALSNVRHRNLIKIIT 112
           +G+G+F  V +     TG   A K++N  +K +A+       E      ++H N++++  
Sbjct: 37  LGKGAFSVVRRCVHKTTGLEFAAKIIN-TKKLSARDFQKLEREARICRKLQHPNIVRLHD 95

Query: 113 VCSSIDFKGVDFKALIYEYMKCG 135
                  +   F  L+++ +  G
Sbjct: 96  S-----IQEESFHYLVFDLVTGG 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 2/95 (2%)

Query: 477 SIPLEVGNLRNLAEFDLSENHFSNEIP-VTLSACTTLEYLHLQGNSFSGSLPLSLKTLKS 535
                +    NL E  +        +    L     L  L +  +      P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 536 IKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHF 570
           +  L+LS N L   +       L L  L LS N  
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 259 PNVNFLSVGQNNFTGSLP-HSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN 317
            N+  L +        L          L+ L + K+         F+    LSRL LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKF 349
            L + S   +  L+L       + L L+ N  
Sbjct: 91  ALESLSWKTVQGLSL-------QELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 377 TIPSEIKNLVNINAFGVEYNQLTGTIP-HAIGELKNLQGLALVRNSLRGTIPDTLGNLTL 435
                +    N+    +E  Q    +    +  L  L+ L +V++ LR   PD       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 436 LNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
           L+RL L FN L+     ++      ++L   L LSGN
Sbjct: 82  LSRLNLSFNALESLSWKTVQG----LSLQE-LVLSGN 113

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 56 IGQGSFGFVYKGKLGETGTTVAVKVMNL 83
          IG+G++G V K     +G  +AVK +  
Sbjct: 30 IGRGAYGSVNKMVHKPSGQIMAVKRIRS 57

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITV 113
           +G+G+F  V +      G   A  ++N K+      +    E      ++H N++++   
Sbjct: 19  LGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDS 78

Query: 114 CSSIDF 119
            S    
Sbjct: 79  ISEEGH 84

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 56 IGQGSFGFVYKGKLGETGTTVAVKVMNL 83
          +G+G++G V K +   +G  +AVK +  
Sbjct: 15 LGRGAYGVVEKMRHVPSGQIMAVKRIRA 42

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 25  SSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK 84
           S+      Q F + S   L +         ++GQ       +    ETG +  V V    
Sbjct: 57  STSLWNTGQPFRVESE--LGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFT 114

Query: 85  QKGAAKSFVTECEALSNVRHRNLIK 109
           ++  + +     E +  +R    IK
Sbjct: 115 ERPPSNAIKQMKEEVLRLRLLRGIK 139

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 17/108 (15%)

Query: 20  KHTQKSSRTLPMEQQFPMVSYADLSKATNNFSA----SNMIGQGSFGFVYKGKLGETGTT 75
            H   S R     Q   +     + K              +G G++G V   K     + 
Sbjct: 4   HHHHSSGRENLYFQGIAINPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSE 63

Query: 76  VAVKVMNLKQ-------------KGAAKSFVTECEALSNVRHRNLIKI 110
            A+KV+   Q             +   +    E   L ++ H N+IK+
Sbjct: 64  KAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKL 111

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 16/102 (15%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVK-VMNLKQKGA-AKSFVTECEALSNVRHRNLIKIITV 113
           IG+GS+G+VY      T   VA+K V  + +     K  + E   L+ ++   +I++  +
Sbjct: 34  IGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDL 93

Query: 114 C---SSIDFKGVDFKALIYEYMKCGSSEDWMHQ---SNDKLE 149
                 + F  +    ++ E       +  + +   +   L 
Sbjct: 94  IIPDDLLKFDEL---YIVLEIA-----DSDLKKLFKTPIFLT 127

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHR 105
            NF     IG+G++G VYK +   TG  VA+K + L  +  G   + + E   L  + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62

Query: 106 NLIKIITVCSSIDFKGVDFKALIYEYM 132
           N++K++ V  +   +   +  L++E++
Sbjct: 63  NIVKLLDVIHT---ENKLY--LVFEFL 84

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 49  NFSASNMIGQGSFG-FVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRN 106
           +F   +++G G+ G  VY+G        VAVK +  +    A     E + L     H N
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMF--DNRDVAVKRILPECFSFADR---EVQLLRESDEHPN 79

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
           +I+          K   F+ +  E     + ++++ Q
Sbjct: 80  VIRYFCT-----EKDRQFQYIAIELCA-ATLQEYVEQ 110

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 42  DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFV--T---EC 96
           D+      +   + +G+G F  VYK +   T   VA+K + L  +  AK  +  T   E 
Sbjct: 4   DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI 63

Query: 97  EALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM 132
           + L  + H N+I ++        K      L++++M
Sbjct: 64  KLLQELSHPNIIGLLDAFGH---KSNIS--LVFDFM 94

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA-AKSFVTECEALSNVRHRNLIK---II 111
           +G+G++G V       TG  VA+K +    K   A   + E + L + +H N+I    I 
Sbjct: 19  LGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQ 78

Query: 112 TVCSSIDFKGVDFKALIYEYMKC 134
              S  +F  V    +I E M+ 
Sbjct: 79  RPDSFENFNEV---YIIQELMQT 98

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--GAAKSFVTECEALSNVRHR 105
             +     IG+G++G V+K K  ET   VA+K + L     G   S + E   L  ++H+
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 106 NLIKIITVCSSIDFKGVDFKALIYEYM 132
           N++++  V  S          L++E+ 
Sbjct: 62  NIVRLHDVLHS---DKKLT--LVFEFC 83

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 16/116 (13%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAA-KSFVTECEAL-SNVRHRNLIKIITV 113
           +G G+ G V+K +  +TG  +AVK M         K  + + + +  +     +++    
Sbjct: 33  MGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQ---- 88

Query: 114 CSSIDFKGVDFKA----LIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLE 165
                  G         +  E M    +E    +    +    LG +    +  L 
Sbjct: 89  -----CFGTFITNTDVFIAMELMG-TCAEKLKKRMQGPIPERILGKMTVAIVKALY 138

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITV-- 113
           +G G  G V+     +    VA+K + L    + K  + E + +  + H N++K+  +  
Sbjct: 19  LGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILG 78

Query: 114 -----CSSIDFKGVDFKA--LIYEYMKC 134
                 +       +  +  ++ EYM+ 
Sbjct: 79  PSGSQLTDDVGSLTELNSVYIVQEYMET 106

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 8/83 (9%), Positives = 25/83 (30%), Gaps = 19/83 (22%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVT------------- 94
           N++     + QG F  +   +  +     A+K          + F               
Sbjct: 31  NDYRIIRTLNQGKFNKIILCE--KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYD 88

Query: 95  ----ECEALSNVRHRNLIKIITV 113
               E + ++++++   +    +
Sbjct: 89  DFKNELQIITDIKNEYCLTCEGI 111

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVT-------ECEALSNVRHR--N 106
           +G G FG VY G        VA+K +  K + +    +        E   L  V      
Sbjct: 51  LGSGGFGSVYSGIRVSDNLPVAIKHVE-KDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 109

Query: 107 LIKIITV 113
           +I+++  
Sbjct: 110 VIRLLDW 116

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 25 SSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK 84
              +P     P        K          IG+G FG V++       T VA+K++ ++
Sbjct: 7  QKGPVPFSHCLPTEKLQRCEK----------IGEGVFGEVFQTIA--DHTPVAIKIIAIE 54

Query: 85 QKGAAKS 91
                 
Sbjct: 55 GPDLVNG 61

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 29/106 (27%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMN----LKQKGAAKSFVT----------------- 94
           IG+GS+G V         T  A+KV++    ++Q G  +                     
Sbjct: 21  IGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPI 80

Query: 95  -----ECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCG 135
                E   L  + H N++K++ V   +D    D   +++E +  G
Sbjct: 81  EQVYQEIAILKKLDHPNVVKLVEV---LDDPNEDHLYMVFELVNQG 123

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 19/106 (17%)

Query: 44  SKATNNFSA----SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---------KGAAK 90
           S +T+ F        ++G+G    V +     T    AVK++++           +   +
Sbjct: 9   SHSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELRE 68

Query: 91  SFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCG 135
           + + E + L  V  H N+I++        ++   F  L+++ MK G
Sbjct: 69  ATLKEVDILRKVSGHPNIIQLKDT-----YETNTFFFLVFDLMKKG 109

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKII 111
           +G+G+   VY+ K   T    A+KV+        K   TE   L  + H N+IK+ 
Sbjct: 61  LGRGATSIVYRCKQKGTQKPYALKVLKKTVD--KKIVRTEIGVLLRLSHPNIIKLK 114

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 14/129 (10%)

Query: 16  TGRRKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTT 75
              +    ++     M  +  +  +A   +    +   ++IG+G    V +     TG  
Sbjct: 62  NDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHE 121

Query: 76  VAVKVMNLKQ--------KGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFKA 126
            AVK+M +          +   ++   E   L  V  H ++I +I    S       F  
Sbjct: 122 FAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYES-----SSFMF 176

Query: 127 LIYEYMKCG 135
           L+++ M+ G
Sbjct: 177 LVFDLMRKG 185

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 48  NNFSASNMIGQGSFG-FVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALS-NVRHR 105
           N   +  ++G GS G  V++G     G  VAVK M +     A     E + L+ +  H 
Sbjct: 15  NLVVSEKILGYGSSGTVVFQGSF--QGRPVAVKRMLIDFCDIALM---EIKLLTESDDHP 69

Query: 106 NLIKIITVCSSIDF 119
           N+I+     ++  F
Sbjct: 70  NVIRYYCSETTDRF 83

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKII-TV 113
           +G+G +  V++         V VK++   +K   K    E + L N+R   N+I +   V
Sbjct: 44  LGRGKYSEVFEAINITNNEKVVVKILKPVKK---KKIKREIKILENLRGGPNIITLADIV 100

Query: 114 CSSIDFKGVDFKALIYEYM 132
              +         L++E++
Sbjct: 101 KDPVSRTPA----LVFEHV 115

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 38/280 (13%), Positives = 79/280 (28%), Gaps = 83/280 (29%)

Query: 306 LSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKIT 365
           LS+L +L L+   +     + +  + L +    ++ + L + +     LR++  +  +  
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAV-LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 366 VIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGT 425
            +G+  N +                   +           + +        L+ +     
Sbjct: 130 KLGLQLNSLGPE--------------ACK----------DLRD-------LLLHDQ---- 154

Query: 426 IPDTLGNLTLLNRLFLGFNNLQGN----VPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE 481
                     +  L L  N L       +   L    ++      L L    LG     +
Sbjct: 155 --------CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH----LSLLHTGLG-----D 197

Query: 482 VGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF--SGSLPLS--LKTLKSIK 537
            G L  LA                L     L+ L++  N    + +L L+   +   S++
Sbjct: 198 EG-LELLAA--------------QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLE 242

Query: 538 ELDLSRNNLS-------GQIPKYLENLLFLAYLNLSYNHF 570
            L L  N LS         +    E    +          
Sbjct: 243 LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGA-AKSFVTECEALSNVRHR 105
              ++  + IG+G++G V           VA+K ++  +     +  + E + L   RH 
Sbjct: 26  GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 85

Query: 106 NLIK---IITVCSSIDFKGVDFKALIYEYMKC 134
           N+I    II   +    K V    ++ + M+ 
Sbjct: 86  NIIGINDIIRAPTIEQMKDV---YIVQDLMET 114

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVT-------ECEALSNVR---- 103
           ++G+G FG V+ G        VA+KV+  + +    S ++       E   L  V     
Sbjct: 38  LLGKGGFGTVFAGHRLTDRLQVAIKVIP-RNRVLGWSPLSDSVTCPLEVALLWKVGAGGG 96

Query: 104 HRNLIKIITV 113
           H  +I+++  
Sbjct: 97  HPGVIRLLDW 106

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 18/116 (15%)

Query: 19  RKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAV 78
             H   SS    +  Q  M  Y  L K          +G+G++G VYK K    G  VA+
Sbjct: 2   HHHHHHSSGRENLYFQGLMEKYQKLEK----------VGEGTYGVVYKAK-DSQGRIVAL 50

Query: 79  KVMNLKQK--GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM 132
           K + L  +  G   + + E   L  + H N++ +I V  S   +      L++E+M
Sbjct: 51  KRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHS---ERCLT--LVFEFM 101

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 24/104 (23%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGK-LGETGTTVAVKVMNLKQKGAAKSFVTECE----- 97
            +A   +     IG+G++G V+K + L   G  VA+K + ++            E     
Sbjct: 7   CRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQT---------GEEGMPLS 57

Query: 98  ---------ALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM 132
                     L    H N++++  VC+           L++E++
Sbjct: 58  TIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	628
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.66
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.65
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.64
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.63
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.58
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.57
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.57
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.54
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.51
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.51
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.4
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.39
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.36
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.35
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.32
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.31
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.3
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.29
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.28
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.27
3uqc_A	286	Probable conserved transmembrane protein; structur	99.27
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.27
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.26
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.26
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.26
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.25
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.25
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.24
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.24
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.24
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.23
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.23
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.23
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.23
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.23
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.23
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.22
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.22
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.22
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.22
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.22
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.22
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.22
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.21
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.21
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.2
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.2
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.2
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.2
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.19
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.19
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.19
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.19
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.19
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.19
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.19
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.18
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.18
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.18
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.18
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.18
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.17
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.17
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.17
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.16
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.16
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.16
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.16
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.16
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.16
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.16
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.15
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.15
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.15
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.15
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.15
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.15
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.15
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.15
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.15
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.15
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.15
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.15
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.14
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.14
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.14
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.14
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.14
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.14
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.14
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.13
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.13
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.13
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.13
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.13
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.13
3bhy_A	283	Death-associated protein kinase 3; death associate	99.13
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.13
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.13
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.13
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.13
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.12
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.12
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.12
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.12
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.12
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.12
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.12
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.12
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.12
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.12
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.12
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.11
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.11
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.11
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.11
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.1
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.1
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.1
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.1
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.1
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.09
3niz_A	311	Rhodanese family protein; structural genomics, str	99.09
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.09
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.09
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.09
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.08
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.08
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.08
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.08
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.08
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.08
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.08
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.08
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.08
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.07
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.07
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.07
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.07
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.06
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.06
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.06
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.06
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.06
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.06
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.06
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.05
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.05
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.05
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.05
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.05
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.05
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.05
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.04
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.04
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.04
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.04
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.04
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.04
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.03
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.03
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.03
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.03
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.02
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.02
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.02
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.02
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.02
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.01
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.01
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.01
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.01
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.01
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	98.99
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	98.99
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	98.99
3pls_A	298	Macrophage-stimulating protein receptor; protein k	98.99
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	98.99
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	98.99
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	98.99
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	98.98
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	98.98
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	98.98
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	98.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	98.97
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	98.97
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.97
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	98.97
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	98.97
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	98.96
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.96
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	98.95
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	98.95
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	98.94
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	98.94
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	98.94
3an0_A	340	Dual specificity mitogen-activated protein kinase;	98.94
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	98.93
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	98.93
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	98.92
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	98.92
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	98.92
3fme_A	290	Dual specificity mitogen-activated protein kinase;	98.91
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	98.9
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	98.9
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	98.9
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	98.9
3aln_A	327	Dual specificity mitogen-activated protein kinase;	98.89
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	98.87
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	98.87
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	98.86
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.86
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.85
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	98.84
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	98.84
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	98.83
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	98.83
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	98.82
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	98.81
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	98.81
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	98.8
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	98.78
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	98.78
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	98.76
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	98.76
2dyl_A	318	Dual specificity mitogen-activated protein kinase	98.76
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	98.73
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	98.72
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	98.71
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.69
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	98.68
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	98.67
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	98.67
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	98.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.6
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.31
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.97
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	97.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.54
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.53
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.17
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.14
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.95
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.49
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	95.38
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	93.13
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	92.12
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	91.37
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	90.7
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	88.73
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	84.9
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	83.75
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	80.61

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.5e-58  Score=513.67  Aligned_cols=441  Identities=34%  Similarity=0.544  Sum_probs=365.1

Q ss_pred             cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCC-CCC
Q 042887          158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNI-SSL  236 (628)
Q Consensus       158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l-~~L  236 (628)
                      ++++++|++|++++|.+++.+|..|..+++|++|++++|.+++..|..  .+++|++|++++|.+++.+|..+... ++|
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L  296 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL  296 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred             cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence            678899999999999999999999999999999999999988766654  67777777777777776677766654 777


Q ss_pred             CEEEeecccCcccCChhhhhCCCCCcEEecccCccccccccc-ccCCCCCCEEEcccccceeecccccccCC-CCCEEEc
Q 042887          237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS-FSNASNLQVLDVYKNHFSGQVKIDFNRLS-NLSRLFL  314 (628)
Q Consensus       237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L  314 (628)
                      ++|++++|.+++.+|..+. .+++|++|++++|++++.+|.. +.++++|++|++++|++++..|..+..++ +|++|++
T Consensus       297 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L  375 (768)
T 3rgz_A          297 TGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL  375 (768)
T ss_dssp             SEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred             CEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence            7777777777766666554 3777777777777776555544 67777777777777777666666666665 6666666


Q ss_pred             cCCcCCCcCCCCc--------------------cccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcc
Q 042887          315 SKNNLGTESTSDL--------------------DFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQI  374 (628)
Q Consensus       315 ~~n~l~~~~~~~~--------------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l  374 (628)
                      ++|++++..+..+                    ..+..+.++++|+.|++++|.+++..+..+..+. +|+.|++++|.+
T Consensus       376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l  454 (768)
T 3rgz_A          376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNML  454 (768)
T ss_dssp             CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCC
T ss_pred             cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcc
Confidence            6666543211110                    2334567788888999999888888888888776 889999999998


Q ss_pred             eeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcc
Q 042887          375 SGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL  454 (628)
Q Consensus       375 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  454 (628)
                      .+.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|++++..|.++..+++|++|++++|++++..|..+
T Consensus       455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  534 (768)
T 3rgz_A          455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL  534 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred             cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence            88888888889999999999999988888888899999999999999988889999999999999999999998899888


Q ss_pred             cCCcchhcccceEEcCCCcCccccchhh----------------------------------------------------
Q 042887          455 GNCQNLMTLSRLLDLSGNLLGGSIPLEV----------------------------------------------------  482 (628)
Q Consensus       455 ~~l~~L~~l~~~L~Ls~N~l~~~~~~~~----------------------------------------------------  482 (628)
                      ..+++|    +.|++++|++.+.+|..+                                                    
T Consensus       535 ~~l~~L----~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  610 (768)
T 3rgz_A          535 GDCRSL----IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR  610 (768)
T ss_dssp             GGCTTC----CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred             cCCCCC----CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence            888888    888999998887666433                                                    


Q ss_pred             ------------------hccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887          483 ------------------GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN  544 (628)
Q Consensus       483 ------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  544 (628)
                                        +.+++|++|||++|++++.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|||++|
T Consensus       611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N  690 (768)
T 3rgz_A          611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN  690 (768)
T ss_dssp             CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence                              34578999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCcccCCCCCCCCCCCCC
Q 042887          545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGR  610 (628)
Q Consensus       545 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~l~l~~c~~~~  610 (628)
                      ++++.+|+.+..+++|++||+++|+++|.+|..+.+.++....+.|||.+||..    +++|....
T Consensus       691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~~~  752 (768)
T 3rgz_A          691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDPSN  752 (768)
T ss_dssp             CCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCSCC
T ss_pred             cccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----CcCCCCCc
Confidence            999999999999999999999999999999999999999999999999999863    45898544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.4e-54  Score=484.76  Aligned_cols=434  Identities=32%  Similarity=0.498  Sum_probs=372.4

Q ss_pred             ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL  236 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L  236 (628)
                      +..++++|++|++++|.+++.+|. ++++++|++|++++|.+++..|.+|+.+++|++|++++|.+++..|..  .+++|
T Consensus       195 ~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L  271 (768)
T 3rgz_A          195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL  271 (768)
T ss_dssp             BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTC
T ss_pred             CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCC
Confidence            447889999999999999988887 999999999999999999999999999999999999999999877765  89999


Q ss_pred             CEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccc-cccCCCCCEEEcc
Q 042887          237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLS  315 (628)
Q Consensus       237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~  315 (628)
                      ++|++++|.+++.+|..++..+++|++|++++|++++..|..|+++++|++|++++|++++..|.. |..+++|++|+++
T Consensus       272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence            999999999999999998875699999999999999999999999999999999999999777655 9999999999999


Q ss_pred             CCcCCCcCCCCccc-------------------cccccC--CCCCceeecccCCcccccchHHHhccccccEEEccCCcc
Q 042887          316 KNNLGTESTSDLDF-------------------LTLLTN--CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQI  374 (628)
Q Consensus       316 ~n~l~~~~~~~~~~-------------------~~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l  374 (628)
                      +|.+++..+..+..                   +..+..  +++|+.|++++|.+++..+..+..+. +|+.|++++|.+
T Consensus       352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l  430 (768)
T 3rgz_A          352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYL  430 (768)
T ss_dssp             SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEE
T ss_pred             CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcc
Confidence            99987433322211                   111222  56788888888888777777777776 788888888888


Q ss_pred             eeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcc
Q 042887          375 SGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL  454 (628)
Q Consensus       375 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  454 (628)
                      ++..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|.++
T Consensus       431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence            88888888888888888888888888888888888888888888888888888888888889999999998888888888


Q ss_pred             cCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccc----------------------------
Q 042887          455 GNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTL----------------------------  506 (628)
Q Consensus       455 ~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------------  506 (628)
                      +.+++|    +.|++++|++.+.+|..++.+++|++|++++|++++.+|..+                            
T Consensus       511 ~~l~~L----~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (768)
T 3rgz_A          511 GRLENL----AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE  586 (768)
T ss_dssp             GGCTTC----CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred             hcCCCC----CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence            888888    888999999988888889899999999999998877666543                            


Q ss_pred             ------------------------------------------cCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887          507 ------------------------------------------SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN  544 (628)
Q Consensus       507 ------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  544 (628)
                                                                ..+++|++|||++|++++.+|..++.+++|+.|+|++|
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence                                                      23467888999999999999999999999999999999


Q ss_pred             cccccCchhhhcccCCCeEeccCCcCcccCCCC-CCCCCCCcccccCCCCCcccCC
Q 042887          545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK-GVFGNRTGIHLIGNERLCGGLE  599 (628)
Q Consensus       545 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  599 (628)
                      ++++.+|+.|.++++|+.||+++|+++|.+|.. +.++.++.+++++|+ +.|.+|
T Consensus       667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~-l~g~iP  721 (768)
T 3rgz_A          667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN-LSGPIP  721 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE-EEEECC
T ss_pred             ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc-ccccCC
Confidence            999999999999999999999999999988853 567788889998885 444444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2e-51  Score=452.21  Aligned_cols=425  Identities=24%  Similarity=0.266  Sum_probs=326.7

Q ss_pred             cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCC
Q 042887          158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE  237 (628)
Q Consensus       158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~  237 (628)
                      +.++++|++|||++|++++..|++|+++++|++|+|++|.+++..|.+|+.+++|++|++++|.+++..|..++++++|+
T Consensus        53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~  132 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE  132 (606)
T ss_dssp             STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred             hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence            44556666666666666666666666666666666666666666666666666666666666666654455566666666


Q ss_pred             EEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCC--EEEcccccceeec----------------
Q 042887          238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQ--VLDVYKNHFSGQV----------------  299 (628)
Q Consensus       238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--~L~L~~N~i~~~~----------------  299 (628)
                      +|++++|.+++ ++...+..+++|++|++++|.+++..+..|+.+++|+  +|++++|.+++..                
T Consensus       133 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  211 (606)
T 3t6q_A          133 SLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG  211 (606)
T ss_dssp             EEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred             EEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence            66666666652 2211111266666666666666655555566666555  5555555554443                


Q ss_pred             -----------------------------------------------------------ccccccCCCCCEEEccCCcCC
Q 042887          300 -----------------------------------------------------------KIDFNRLSNLSRLFLSKNNLG  320 (628)
Q Consensus       300 -----------------------------------------------------------~~~~~~l~~L~~L~L~~n~l~  320 (628)
                                                                                 +..|..+++|++|++++|.++
T Consensus       212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  291 (606)
T 3t6q_A          212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS  291 (606)
T ss_dssp             CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred             chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence                                                                       333555667777777777666


Q ss_pred             CcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCch-hhhccCCcCeeeecccccc
Q 042887          321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS-EIKNLVNINAFGVEYNQLT  399 (628)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~  399 (628)
                      .+       +..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.+.++. .+..+++|++|++++|.+.
T Consensus       292 ~l-------p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  363 (606)
T 3t6q_A          292 EL-------PSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE  363 (606)
T ss_dssp             CC-------CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred             CC-------ChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence            43       23466778899999999998888777777776 899999999988865554 4889999999999999998


Q ss_pred             ccC--CcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCc-ccCCcchhcccceEEcCCCcCcc
Q 042887          400 GTI--PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSS-LGNCQNLMTLSRLLDLSGNLLGG  476 (628)
Q Consensus       400 ~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~l~~~L~Ls~N~l~~  476 (628)
                      +..  +..+..+++|++|++++|.+.+..|..|..+++|++|++++|++++..+.. +..+++|    +.|++++|.+.+
T Consensus       364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~  439 (606)
T 3t6q_A          364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL----KVLNLSHSLLDI  439 (606)
T ss_dssp             EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC----CEEECTTCCCBT
T ss_pred             cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC----CEEECCCCccCC
Confidence            765  778899999999999999999888889999999999999999998776544 7888888    899999999998


Q ss_pred             ccchhhhccCCCCEeeCcCCcCccc---CCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchh
Q 042887          477 SIPLEVGNLRNLAEFDLSENHFSNE---IPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY  553 (628)
Q Consensus       477 ~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  553 (628)
                      ..|..+..+++|++|++++|++++.   .+..+..+++|++|++++|++++..|..|..+++|++|++++|++++..|+.
T Consensus       440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  519 (606)
T 3t6q_A          440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA  519 (606)
T ss_dssp             TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred             cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence            8888999999999999999999863   3367889999999999999999988999999999999999999999999999


Q ss_pred             hhcccCCCeEeccCCcCcccCCCC-CCCCCCCcccccCCCCCcc
Q 042887          554 LENLLFLAYLNLSYNHFEGEVPRK-GVFGNRTGIHLIGNERLCG  596 (628)
Q Consensus       554 ~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~  596 (628)
                      +.+++.| +|++++|++++.+|.. +.+++++.++++|||+.|.
T Consensus       520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            9999999 9999999999877753 5567899999999999984

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.1e-50  Score=440.91  Aligned_cols=423  Identities=19%  Similarity=0.189  Sum_probs=285.1

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      ..+++||+++|.+++..|..|.++++|++|+|++|.++++.|++|+++++|++|+|++|.+++..|..|+++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            36899999999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCC--EEEccCCcC
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLS--RLFLSKNNL  319 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~--~L~L~~n~l  319 (628)
                      ++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+  +|++++|.+
T Consensus       113 ~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          113 IQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             TTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             cccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            999999 45433445699999999999999986655666699999999999999999899999999999  999999999


Q ss_pred             CCcCCCCcccc---------------------------------------------------------------------
Q 042887          320 GTESTSDLDFL---------------------------------------------------------------------  330 (628)
Q Consensus       320 ~~~~~~~~~~~---------------------------------------------------------------------  330 (628)
                      +...+..+...                                                                     
T Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence            87765543211                                                                     


Q ss_pred             ccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCC-cCCCCC
Q 042887          331 TLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIP-HAIGEL  409 (628)
Q Consensus       331 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l  409 (628)
                      ..+..+++|+.|++++|.++.. +..+..+. +|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+| ..+..+
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLSEL-PSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCSCC-CSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             HHhccccCCCEEeccCCccCCC-Chhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence            0123344455555555544422 22233332 45555555555554444455555555555555555443332 235555


Q ss_pred             CCCCeEecccCcccccc--CccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccch-hhhccC
Q 042887          410 KNLQGLALVRNSLRGTI--PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL-EVGNLR  486 (628)
Q Consensus       410 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~-~~~~l~  486 (628)
                      ++|++|++++|.+++..  +..+..+++|++|++++|++++..|..+..+++|    +.|++++|++.+..+. .+..++
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL----ELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC----SEEECTTCCEECCTTCCTTTTCT
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC----CeEECCCCcCCCcccchhhhCcc
Confidence            55555555555555443  4455555566666666665555555555555555    5556666665544333 255566


Q ss_pred             CCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeee---cCccccCCCCCCEEECCCCcccccCchhhhcccCCCeE
Q 042887          487 NLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGS---LPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYL  563 (628)
Q Consensus       487 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  563 (628)
                      +|++|++++|.+++..|..+..+++|++|++++|++++.   .+..+..+++|++|++++|++++..|..|..+++|++|
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            666666666666555555566666666666666665541   22345556666666666666665556666666666666


Q ss_pred             eccCCcCcccCCC-CCCCCCCCcccccCCC
Q 042887          564 NLSYNHFEGEVPR-KGVFGNRTGIHLIGNE  592 (628)
Q Consensus       564 ~ls~N~l~~~~p~-~~~~~~l~~~~~~~n~  592 (628)
                      ++++|++++..|. ...++.+ .+++++|.
T Consensus       506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             ECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred             ECCCCccCcCChhHhCccccc-EEECcCCc
Confidence            6666666655442 2333444 55555553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.1e-50  Score=441.73  Aligned_cols=425  Identities=18%  Similarity=0.164  Sum_probs=281.4

Q ss_pred             CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      .++++|++||+++|.+++..|.+|.++++|++|+|++|.+++..|.+|+++++|++|++++|.+++..+..++++++|++
T Consensus        53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  132 (606)
T 3vq2_A           53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK  132 (606)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred             cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence            34444555555555554444444455555555555555554444444555555555555555544433344455555555


Q ss_pred             EEeecccCcc-cCChhhhhCCCCCcEEecccCcccccccccccCCCCCC----EEEcccccceeecccccccCCCCCEEE
Q 042887          239 ISLHSNRFEG-SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQ----VLDVYKNHFSGQVKIDFNRLSNLSRLF  313 (628)
Q Consensus       239 L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~N~i~~~~~~~~~~l~~L~~L~  313 (628)
                      |++++|.+++ .+|..+. ++++|++|++++|++++..+..|+.+++|+    +|++++|.++++.+..|... +|++|+
T Consensus       133 L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~  210 (606)
T 3vq2_A          133 LNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT  210 (606)
T ss_dssp             EECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEE
T ss_pred             EeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeee
Confidence            5555554442 2343333 245555555555555444444444433332    45555555444444333322 455555


Q ss_pred             ccCCcCCCc--------------------------------------------------CCCC-----------------
Q 042887          314 LSKNNLGTE--------------------------------------------------STSD-----------------  326 (628)
Q Consensus       314 L~~n~l~~~--------------------------------------------------~~~~-----------------  326 (628)
                      +++|.+.+.                                                  ....                 
T Consensus       211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L  290 (606)
T 3vq2_A          211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM  290 (606)
T ss_dssp             EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred             ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence            555543200                                                  0000                 


Q ss_pred             ------ccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccc
Q 042887          327 ------LDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG  400 (628)
Q Consensus       327 ------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  400 (628)
                            +.....+..+++|+.|++++|.+... + .+ .++ +++.|++++|...+..  .+..+++|+.|++++|.+.+
T Consensus       291 ~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~l-p-~~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  364 (606)
T 3vq2_A          291 SLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF-P-TL-DLP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF  364 (606)
T ss_dssp             EEESCCCCCCCCCCTTCCCSEEEEESCCCSSC-C-CC-CCS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred             EecCccchhhhhccccccCCEEEcccccCccc-c-cC-CCC-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence                  00000233344555555555555222 2 22 332 5666666666444333  45677888888888888876


Q ss_pred             c--CCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccC-CcccCCcchhcccceEEcCCCcCccc
Q 042887          401 T--IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP-SSLGNCQNLMTLSRLLDLSGNLLGGS  477 (628)
Q Consensus       401 ~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~l~~~L~Ls~N~l~~~  477 (628)
                      .  .|..+..+++|++|++++|.+++ .|..+..+++|+.|++++|++.+..| ..+..+++|    +.|++++|++.+.
T Consensus       365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~  439 (606)
T 3vq2_A          365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL----LYLDISYTNTKID  439 (606)
T ss_dssp             EEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC----CEEECTTSCCEEC
T ss_pred             CcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC----CEEECcCCCCCcc
Confidence            5  36778888899999999998885 56788899999999999999987777 678888888    8999999999988


Q ss_pred             cchhhhccCCCCEeeCcCCcCcc-cCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhc
Q 042887          478 IPLEVGNLRNLAEFDLSENHFSN-EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLEN  556 (628)
Q Consensus       478 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  556 (628)
                      .|..+.++++|++|++++|++++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..|.+
T Consensus       440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  519 (606)
T 3vq2_A          440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ  519 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred             chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence            89999999999999999999997 47888999999999999999999999999999999999999999999988999999


Q ss_pred             ccCCCeEeccCCcCcccCCCCCCCC-CCCcccccCCCCCcc
Q 042887          557 LLFLAYLNLSYNHFEGEVPRKGVFG-NRTGIHLIGNERLCG  596 (628)
Q Consensus       557 l~~L~~L~ls~N~l~~~~p~~~~~~-~l~~~~~~~n~~~c~  596 (628)
                      +++|++|++++|+++..++....++ +++.+++.+||+.|.
T Consensus       520 l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             CTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             CCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence            9999999999999996555545555 599999999999994

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-49  Score=442.85  Aligned_cols=434  Identities=22%  Similarity=0.222  Sum_probs=285.4

Q ss_pred             CcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCcc--CCCCCC
Q 042887          160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIW--NISSLE  237 (628)
Q Consensus       160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~--~l~~L~  237 (628)
                      ++++|++|++++|++++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..+.  .+++|+
T Consensus        95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  174 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK  174 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred             cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence            344444444444444444444444444444444444444444444444444444444444444433333222  234444


Q ss_pred             EEEeecccCcccCChhhhh--------------------------CCCCCcEEecccCcccccccccccCCCC--CCEEE
Q 042887          238 IISLHSNRFEGSLPLNIGF--------------------------NIPNVNFLSVGQNNFTGSLPHSFSNASN--LQVLD  289 (628)
Q Consensus       238 ~L~L~~n~l~~~~~~~~~~--------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~  289 (628)
                      +|++++|.+++..|..+..                          ..++|+.|++++|.+++..|..|.+++.  |++|+
T Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~  254 (680)
T 1ziw_A          175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD  254 (680)
T ss_dssp             EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred             EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence            4444444444222221110                          0123344444444444444444544433  77777


Q ss_pred             cccccceeecccccccCCCCCEEEccCCcCCCcCCCCccc-----------------------c----ccccCCCCCcee
Q 042887          290 VYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDF-----------------------L----TLLTNCSQMEML  342 (628)
Q Consensus       290 L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------------~----~~l~~~~~L~~L  342 (628)
                      +++|++++..+..|..+++|++|++++|.+....+..+..                       +    ..+..+++|+.|
T Consensus       255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L  334 (680)
T 1ziw_A          255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL  334 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred             CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence            7777777666667777777777777777766544322211                       0    034556777777


Q ss_pred             ecccCCcccccchHHHhcc---------------------------ccccEEEccCCcceeeCchhhhccCCcCeeeecc
Q 042887          343 YLNTNKFGGVFLRSIANLS---------------------------AKITVIGMGDNQISGTIPSEIKNLVNINAFGVEY  395 (628)
Q Consensus       343 ~l~~n~~~~~~~~~~~~~~---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  395 (628)
                      ++++|.+.+..+..+..+.                           .+++.|++++|++++..|..+..+++|+.|++++
T Consensus       335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  414 (680)
T 1ziw_A          335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL  414 (680)
T ss_dssp             ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence            7777777766555444432                           2455556666666666677777777777777777


Q ss_pred             ccccccCC-cCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccc--cccCCcccCCcchhcccceEEcCCC
Q 042887          396 NQLTGTIP-HAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ--GNVPSSLGNCQNLMTLSRLLDLSGN  472 (628)
Q Consensus       396 n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~l~~~L~Ls~N  472 (628)
                      |.+.+.+| ..|..+++|++|++++|++.+..+..|..+++|+.|++++|.++  +..|..+.++++|    +.|++++|
T Consensus       415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L----~~L~Ls~N  490 (680)
T 1ziw_A          415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL----TILDLSNN  490 (680)
T ss_dssp             SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC----CEEECCSS
T ss_pred             CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC----CEEECCCC
Confidence            77765444 56777777777777777777777777777777888888777775  4567778888888    88999999


Q ss_pred             cCccccchhhhccCCCCEeeCcCCcCcccCC--------ccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887          473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIP--------VTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN  544 (628)
Q Consensus       473 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  544 (628)
                      ++++..+..|.++++|++|++++|++++..+        ..+.++++|++|++++|+++...+..|.++++|+.|+|++|
T Consensus       491 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N  570 (680)
T 1ziw_A          491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN  570 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC
Confidence            9998778889999999999999999986422        23788899999999999999655567999999999999999


Q ss_pred             cccccCchhhhcccCCCeEeccCCcCcccCCCC-C-CCCCCCcccccCCCCCccc
Q 042887          545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK-G-VFGNRTGIHLIGNERLCGG  597 (628)
Q Consensus       545 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~-~~~~l~~~~~~~n~~~c~~  597 (628)
                      ++++.++..|.++++|+.|++++|++++..|.. + .+++++.+++++||+.|..
T Consensus       571 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence            999888888999999999999999999876643 2 4788999999999999964

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.7e-48  Score=431.88  Aligned_cols=429  Identities=20%  Similarity=0.214  Sum_probs=271.6

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      +++++||+++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|+|++|.++...+..|.++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            46777888888877777777777788888888888777777777777888888888888777555556777888888888


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccc--cCCCCCEEEccCCcC
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFN--RLSNLSRLFLSKNNL  319 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~n~l  319 (628)
                      ++|.++ .++...+..+++|++|++++|.+++..|..++++++|++|++++|.+++..+..+.  .+++|++|++++|.+
T Consensus       105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            888776 45544444577888888888877777777777778888888888877766665554  346777888887777


Q ss_pred             CCcCCCCcccccccc---------------------CCCCCceeecccCCcccccchHHHhcc-ccccEEEccCCcceee
Q 042887          320 GTESTSDLDFLTLLT---------------------NCSQMEMLYLNTNKFGGVFLRSIANLS-AKITVIGMGDNQISGT  377 (628)
Q Consensus       320 ~~~~~~~~~~~~~l~---------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~  377 (628)
                      ++..+..+.....+.                     ..++|+.|++++|.+.+..+..+..+. ++++.|++++|.+.+.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            766554332221111                     125677777777777776666666554 2477777777777777


Q ss_pred             CchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCcccc-----ccC----ccccCCCCCCeEecCCccccc
Q 042887          378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG-----TIP----DTLGNLTLLNRLFLGFNNLQG  448 (628)
Q Consensus       378 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~l~~L~~L~L~~N~l~~  448 (628)
                      .|..+..+++|+.|++++|++.+..|..|..+++|+.|++++|...+     .+|    ..|..+++|++|++++|++++
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            77777777777777777777776666555555555555555443221     111    134444444444444444444


Q ss_pred             ccCCcccCCcchhc------------------------ccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCC-
Q 042887          449 NVPSSLGNCQNLMT------------------------LSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIP-  503 (628)
Q Consensus       449 ~~~~~~~~l~~L~~------------------------l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-  503 (628)
                      ..+..+.++++|+.                        -++.|++++|++++..|..|..+++|++|++++|.+++.+| 
T Consensus       344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  423 (680)
T 1ziw_A          344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG  423 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred             CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence            44444443333310                        01445555555555555556666666666666666654333 


Q ss_pred             ccccCCCCCCeEECcCceeee--------------------------ecCccccCCCCCCEEECCCCcccccCchhhhcc
Q 042887          504 VTLSACTTLEYLHLQGNSFSG--------------------------SLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL  557 (628)
Q Consensus       504 ~~~~~l~~L~~L~Ls~N~l~~--------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  557 (628)
                      ..+.++++|++|++++|++.+                          ..|..+..+++|+.|++++|++++..+..|.++
T Consensus       424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l  503 (680)
T 1ziw_A          424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL  503 (680)
T ss_dssp             GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence            455555666666666665543                          345556666677777777777776666667777


Q ss_pred             cCCCeEeccCCcCcccCC---------CCCCCCCCCcccccCC
Q 042887          558 LFLAYLNLSYNHFEGEVP---------RKGVFGNRTGIHLIGN  591 (628)
Q Consensus       558 ~~L~~L~ls~N~l~~~~p---------~~~~~~~l~~~~~~~n  591 (628)
                      ++|++|++++|++++..+         ....+++++.+++++|
T Consensus       504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence            777777777777665321         1234456666777666

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-49  Score=447.60  Aligned_cols=426  Identities=18%  Similarity=0.159  Sum_probs=236.7

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccc-cccccCCCCCCEeecccccCcccCCcCccCCCCCCEEE
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRI-PDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIIS  240 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~  240 (628)
                      +++++|||++|.|++..|..|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+++..|.+|.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            34555555555555555555555555555555555322222 44555555555555555555544455555555555555


Q ss_pred             eecccCcccCChh-hhhCCCCCcEEecccCccccccc-ccccCCCCCCEEEcccccceeecccccccC--CC--------
Q 042887          241 LHSNRFEGSLPLN-IGFNIPNVNFLSVGQNNFTGSLP-HSFSNASNLQVLDVYKNHFSGQVKIDFNRL--SN--------  308 (628)
Q Consensus       241 L~~n~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l--~~--------  308 (628)
                      |++|.+++.+|.. .+..+++|++|+|++|.+++..+ ..|+++++|++|++++|.+++..+..+..+  ++        
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            5555555333322 22335555555555555554333 345555555555555555554444444443  44        


Q ss_pred             ----------------------CCEEEccCCcCCCcCCCCcccc------------------------------ccccC-
Q 042887          309 ----------------------LSRLFLSKNNLGTESTSDLDFL------------------------------TLLTN-  335 (628)
Q Consensus       309 ----------------------L~~L~L~~n~l~~~~~~~~~~~------------------------------~~l~~-  335 (628)
                                            |++|++++|.++......+...                              ..+.. 
T Consensus       184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l  263 (844)
T 3j0a_A          184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL  263 (844)
T ss_dssp             SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred             CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence                                  5555555554433221111000                              00111 


Q ss_pred             -CCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCe
Q 042887          336 -CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQG  414 (628)
Q Consensus       336 -~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  414 (628)
                       .++|+.|++++|.+.+..+..+..+. +++.|++++|.+.+..|..|..+++|+.|++++|.+.+..|..|..+++|+.
T Consensus       264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          264 ARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             ccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence             14566666666666555555555444 5666666666666666666666666666666666666555666666666666


Q ss_pred             EecccCccccccCccccCCCCCCeEecCCcccccccC------------------Cc----------------------c
Q 042887          415 LALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP------------------SS----------------------L  454 (628)
Q Consensus       415 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------~~----------------------~  454 (628)
                      |++++|.+.+..+..|..+++|++|++++|.+++...                  ..                      +
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~  422 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL  422 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHH
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhh
Confidence            6666666665555566666666666666666553210                  00                      0


Q ss_pred             cCCcchhcccceEEcCCCcCccccch-hhhccCCCCEeeCcCCcCc-----ccCCccccCCCCCCeEECcCceeeeecCc
Q 042887          455 GNCQNLMTLSRLLDLSGNLLGGSIPL-EVGNLRNLAEFDLSENHFS-----NEIPVTLSACTTLEYLHLQGNSFSGSLPL  528 (628)
Q Consensus       455 ~~l~~L~~l~~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  528 (628)
                      ..+++|    +.|++++|++++..+. .+..+++|++|++++|.++     +..+..|.++++|+.|+|++|++++..|.
T Consensus       423 ~~l~~L----~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  498 (844)
T 3j0a_A          423 LRVPHL----QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG  498 (844)
T ss_dssp             TTCTTC----CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred             hcCCcc----ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence            011111    3333333333322111 1223344444444444443     22234466677788888888888777777


Q ss_pred             cccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCcc
Q 042887          529 SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCG  596 (628)
Q Consensus       529 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~  596 (628)
                      .|..+++|+.|+|++|++++.++..+.  ++|+.|++++|++++.+|..  +.+++.++++|||+.|.
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          499 VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICE  562 (844)
T ss_dssp             SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCS
T ss_pred             HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccc
Confidence            788888888888888888876666665  67888888888888877743  67899999999999994

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-47  Score=419.72  Aligned_cols=420  Identities=22%  Similarity=0.197  Sum_probs=311.6

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH  242 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~  242 (628)
                      .++.||+++|.+++..+.+|.++++|++|+|++|.++++.+..|+++++|++|+|++|.++...|.+|.++++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            56777777777776666677777777777777777776666677777777777777777776666777777777777777


Q ss_pred             cccCcccCChhhhhCCCCCcEEecccCccccc-ccccccCCCCCCEEEcccccceeecccccccCCCC----CEEEccCC
Q 042887          243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS-LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNL----SRLFLSKN  317 (628)
Q Consensus       243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L----~~L~L~~n  317 (628)
                      +|.++ .++...+..+++|++|++++|.+++. .|..|+++++|++|++++|++++..+..|..+++|    +.|++++|
T Consensus       109 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             ccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            77776 44443344577777777777777653 46677777777777777777776666666666666    67777777


Q ss_pred             cCCCcCCCCccc--------------------------------------------------------------------
Q 042887          318 NLGTESTSDLDF--------------------------------------------------------------------  329 (628)
Q Consensus       318 ~l~~~~~~~~~~--------------------------------------------------------------------  329 (628)
                      .++.+.+..+..                                                                    
T Consensus       188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  267 (570)
T 2z63_A          188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  267 (570)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred             CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence            666544332211                                                                    


Q ss_pred             -------cccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccC
Q 042887          330 -------LTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTI  402 (628)
Q Consensus       330 -------~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  402 (628)
                             +..+..+++|+.|++++|.+... +..+...  +++.|++++|.+. .+|.  ..+++|+.|++++|.+.+..
T Consensus       268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             TEEESCSTTTTGGGTTCSEEEEESCEECSC-CBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred             hhhhhhchhhhcCcCcccEEEecCccchhh-hhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence                   11223345556666666655432 2222222  5666666666655 2332  35566666666666665444


Q ss_pred             CcCCCCCCCCCeEecccCcccccc--CccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccc-
Q 042887          403 PHAIGELKNLQGLALVRNSLRGTI--PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP-  479 (628)
Q Consensus       403 ~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~-  479 (628)
                      +.  ..+++|++|++++|.+++..  |..+..+++|++|++++|++++..+. +..+++|    +.|++++|.+.+..+ 
T Consensus       342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L----~~L~l~~n~l~~~~~~  414 (570)
T 2z63_A          342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL----EHLDFQHSNLKQMSEF  414 (570)
T ss_dssp             CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC----CEEECTTSEEESCTTS
T ss_pred             cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC----CEEEccCCccccccch
Confidence            33  67889999999999988654  67788999999999999999865554 8888888    889999999987655 


Q ss_pred             hhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceee-eecCccccCCCCCCEEECCCCcccccCchhhhccc
Q 042887          480 LEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFS-GSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL  558 (628)
Q Consensus       480 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  558 (628)
                      ..+..+++|++|++++|.+.+..|..+.++++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..|..++
T Consensus       415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence            56889999999999999999888999999999999999999997 57889999999999999999999988899999999


Q ss_pred             CCCeEeccCCcCcccCCC-CCCCCCCCcccccCCCCCcc
Q 042887          559 FLAYLNLSYNHFEGEVPR-KGVFGNRTGIHLIGNERLCG  596 (628)
Q Consensus       559 ~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~  596 (628)
                      +|++|++++|++++.+|. ...+++++.+++++|++.|.
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            999999999999987764 35678899999999999885

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2e-47  Score=420.28  Aligned_cols=406  Identities=19%  Similarity=0.187  Sum_probs=342.5

Q ss_pred             ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcc-cCCcCccCCCC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC-KLPLSIWNISS  235 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~~  235 (628)
                      .+.++++|++|+|++|.+++..|+.|+++++|++|++++|.+++..+..|+++++|++|++++|.+++ .+|..|+++++
T Consensus        75 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~  154 (606)
T 3vq2_A           75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN  154 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred             HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence            36788999999999999999989999999999999999999998888899999999999999999986 56999999999


Q ss_pred             CCEEEeecccCcccCChhhhhCCCCC----cEEecccCcccccccccccCCCCCCEEEccccccee--------------
Q 042887          236 LEIISLHSNRFEGSLPLNIGFNIPNV----NFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG--------------  297 (628)
Q Consensus       236 L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--------------  297 (628)
                      |++|++++|.+++..|..+. .+.+|    .+|++++|.+++..+..+... +|++|++++|.+++              
T Consensus       155 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~  232 (606)
T 3vq2_A          155 LVHVDLSYNYIQTITVNDLQ-FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLH  232 (606)
T ss_dssp             CCEEECCSSCCCEECTTTTH-HHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCE
T ss_pred             CCEEEccCCcceecChhhhh-hhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccc
Confidence            99999999999955454443 35555    489999999997777766655 89999988886531              


Q ss_pred             --------------------------------------------ecccccccCCCCCEEEccCCcCCCcCCCC-------
Q 042887          298 --------------------------------------------QVKIDFNRLSNLSRLFLSKNNLGTESTSD-------  326 (628)
Q Consensus       298 --------------------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------  326 (628)
                                                                  ..+. +..+++|+.|++++|.+..++.-.       
T Consensus       233 ~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~  311 (606)
T 3vq2_A          233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLEDVPKHFKWQS  311 (606)
T ss_dssp             EEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCCCCCTTCCCSE
T ss_pred             cccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhhhccccccCCE
Confidence                                                        1111 334445555555555444332000       


Q ss_pred             -------c-cccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceee--CchhhhccCCcCeeeeccc
Q 042887          327 -------L-DFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT--IPSEIKNLVNINAFGVEYN  396 (628)
Q Consensus       327 -------~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n  396 (628)
                             + ..+ .+ .+++|+.|++++|...+..  .+..++ +++.|++++|.+++.  .+..+..+++|+.|++++|
T Consensus       312 L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n  386 (606)
T 3vq2_A          312 LSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN  386 (606)
T ss_dssp             EEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCT-TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred             EEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCC-CCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence                   0 111 23 7789999999999654433  333444 899999999999977  4889999999999999999


Q ss_pred             cccccCCcCCCCCCCCCeEecccCccccccC-ccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCc
Q 042887          397 QLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLG  475 (628)
Q Consensus       397 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~  475 (628)
                      .+.+ .|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|++++..|..+.++++|    +.|++++|++.
T Consensus       387 ~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~  461 (606)
T 3vq2_A          387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL----NTLKMAGNSFK  461 (606)
T ss_dssp             SEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----CEEECTTCEEG
T ss_pred             cccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC----CEEECCCCcCC
Confidence            9985 56889999999999999999998877 689999999999999999999999999999998    89999999999


Q ss_pred             c-ccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhh
Q 042887          476 G-SIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYL  554 (628)
Q Consensus       476 ~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  554 (628)
                      + ..|..++.+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+
T Consensus       462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~  540 (606)
T 3vq2_A          462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL  540 (606)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred             CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence            7 47888999999999999999999999999999999999999999999988999999999999999999999 566669


Q ss_pred             hccc-CCCeEeccCCcCcccCCC
Q 042887          555 ENLL-FLAYLNLSYNHFEGEVPR  576 (628)
Q Consensus       555 ~~l~-~L~~L~ls~N~l~~~~p~  576 (628)
                      ..++ +|++|++++|++.+..+.
T Consensus       541 ~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          541 QHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             GGSCTTCCEEECCSCCCCCSSTT
T ss_pred             hhhcccCcEEEccCCCcccCCcc
Confidence            9987 599999999999987775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.9e-48  Score=426.63  Aligned_cols=418  Identities=18%  Similarity=0.235  Sum_probs=344.6

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCc------c---------------------------ccccccc-
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLG------G---------------------------RIPDSLC-  207 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~---------------------------~~~~~~~-  207 (628)
                      .+++.|+|++|++.|.+|.+|+++++|++|+|++|.+.      +                           .+|..+. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            57999999999999999999999999999999999762      1                           1111111 


Q ss_pred             ------------------CCCCCCEeecc--cccCcccCCcCccCCCCCCEEEeecccCccc-----------------C
Q 042887          208 ------------------QLRSLNYLSIS--ENNFSCKLPLSIWNISSLEIISLHSNRFEGS-----------------L  250 (628)
Q Consensus       208 ------------------~l~~L~~L~Ls--~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~  250 (628)
                                        ....++.+.+.  +|++++ +|..++++++|++|+|++|.+++.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                              11123333332  578887 899999999999999999999964                 8


Q ss_pred             Chhhh-hCCCCCcEEecccCcccccccccccCCCCCCEEEccccc-cee-ecccccccC------CCCCEEEccCCcCCC
Q 042887          251 PLNIG-FNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH-FSG-QVKIDFNRL------SNLSRLFLSKNNLGT  321 (628)
Q Consensus       251 ~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~-~~~~~~~~l------~~L~~L~L~~n~l~~  321 (628)
                      |..++ ..+++|++|++++|++.+.+|..|+++++|++|++++|+ +++ ..|..+..+      ++|++|++++|+++.
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~  319 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT  319 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence            88876 149999999999999999999999999999999999998 887 678777776      899999999999874


Q ss_pred             cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCC-cCeeeeccccccc
Q 042887          322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVN-INAFGVEYNQLTG  400 (628)
Q Consensus       322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~  400 (628)
                      ++.     ...+.++++|+.|++++|.+++..+ .+..+. +|+.|++++|.++ .+|..+..+++ |+.|++++|.+. 
T Consensus       320 ip~-----~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          320 FPV-----ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             CCC-----HHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             cCc-----hhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            321     0157788899999999999987666 666665 8999999999999 77888999999 999999999998 


Q ss_pred             cCCcCCCCCC--CCCeEecccCccccccCcccc-------CCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCC
Q 042887          401 TIPHAIGELK--NLQGLALVRNSLRGTIPDTLG-------NLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSG  471 (628)
Q Consensus       401 ~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~  471 (628)
                      .+|..+..++  +|++|++++|.+++..|..+.       .+++|++|++++|++++..+..+..+++|    +.|++++
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L----~~L~Ls~  466 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL----SSINLMG  466 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC----SEEECCS
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC----CEEECCC
Confidence            6788777655  899999999999998888888       78899999999999995444445567888    8899999


Q ss_pred             CcCccccchhhhcc-------CCCCEeeCcCCcCcccCCcccc--CCCCCCeEECcCceeeeecCccccCCCCCCEEEC-
Q 042887          472 NLLGGSIPLEVGNL-------RNLAEFDLSENHFSNEIPVTLS--ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDL-  541 (628)
Q Consensus       472 N~l~~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-  541 (628)
                      |+++...+..+...       ++|++|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|++|+| 
T Consensus       467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             CCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence            99994433334433       38999999999999 6777776  89999999999999996 8888999999999999 


Q ss_pred             -----CCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCccc
Q 042887          542 -----SRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGG  597 (628)
Q Consensus       542 -----s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  597 (628)
                           ++|++.+.+|..+..+++|++|++++|++ +.+|.. ..++++.+++++|+..|-.
T Consensus       545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred             CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence                 56788889999999999999999999999 667754 3488999999999988743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-46  Score=405.74  Aligned_cols=417  Identities=19%  Similarity=0.209  Sum_probs=313.8

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      ++|++||+++|.+++..|+.|.++++|++|+|++|++++..|++|+++++|++|+|++|+++ .+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            67888888888888888888888888888888888888887888888888888888888888 45555  7888888888


Q ss_pred             ecccCcc-cCChhhhhCCCCCcEEecccCcccccccccccCCCCC--CEEEcccccc--eeecccccccCC-CCCEEEcc
Q 042887          242 HSNRFEG-SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNL--QVLDVYKNHF--SGQVKIDFNRLS-NLSRLFLS  315 (628)
Q Consensus       242 ~~n~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~i--~~~~~~~~~~l~-~L~~L~L~  315 (628)
                      ++|.+++ .+|..+. .+++|++|++++|++++   ..+..+++|  ++|++++|.+  .+..+..+..+. +...++++
T Consensus        98 ~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           98 SFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             CSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             cCCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence            8888874 3555555 48888888888888875   356677777  8888888888  555665555433 12233444


Q ss_pred             CCcCCCcCCCC-------------------------ccccccccCCCCCceeecccCCcccccchHHHhc--cccccEEE
Q 042887          316 KNNLGTESTSD-------------------------LDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL--SAKITVIG  368 (628)
Q Consensus       316 ~n~l~~~~~~~-------------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~  368 (628)
                      +|.+.+.....                         ......+..+++|+.|++++|.+++..+..+...  ..+++.|+
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence            44332211000                         0011234455666666666666554433332211  12677788


Q ss_pred             ccCCcceeeCchhh-----hccCCcCeeeeccccccccCC-cCCCCC---CCCCeEecccCccccccCccccCCCCCCeE
Q 042887          369 MGDNQISGTIPSEI-----KNLVNINAFGVEYNQLTGTIP-HAIGEL---KNLQGLALVRNSLRGTIPDTLGNLTLLNRL  439 (628)
Q Consensus       369 l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  439 (628)
                      +++|.+.+.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L  329 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL  329 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred             eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence            88887777777776     7777778888877777  233 333333   56888888888776322  12688999999


Q ss_pred             ecCCcccccccCCcccCCcchhcccceEEcCCCcCcc--ccchhhhccCCCCEeeCcCCcCcccCCc-cccCCCCCCeEE
Q 042887          440 FLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGG--SIPLEVGNLRNLAEFDLSENHFSNEIPV-TLSACTTLEYLH  516 (628)
Q Consensus       440 ~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~  516 (628)
                      ++++|++++..|..+..+++|    +.|++++|++++  ..|..+..+++|++|++++|++++.+|. .+..+++|++|+
T Consensus       330 ~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~  405 (520)
T 2z7x_B          330 DFSNNLLTDTVFENCGHLTEL----ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN  405 (520)
T ss_dssp             ECCSSCCCTTTTTTCCCCSSC----CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred             EeECCccChhhhhhhccCCCC----CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence            999999998899999999988    899999999996  4567899999999999999999974554 588899999999


Q ss_pred             CcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC-CCCCCCCCcccccCCCCCc
Q 042887          517 LQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR-KGVFGNRTGIHLIGNERLC  595 (628)
Q Consensus       517 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c  595 (628)
                      +++|++++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|++++..+. ...+++++.+++++|++.|
T Consensus       406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            999999887777664  79999999999999 6777777999999999999999964443 4567889999999999998


Q ss_pred             c
Q 042887          596 G  596 (628)
Q Consensus       596 ~  596 (628)
                      .
T Consensus       483 ~  483 (520)
T 2z7x_B          483 S  483 (520)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.3e-46  Score=406.82  Aligned_cols=402  Identities=19%  Similarity=0.209  Sum_probs=338.2

Q ss_pred             ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL  236 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L  236 (628)
                      .+.++++|++||+++|++++..|..|+++++|++|+|++|.+++..|.+|+++++|++|++++|.++...+..++++++|
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence            35677888888888888888778888888888888888888887777888888888888888888886655678888888


Q ss_pred             CEEEeecccCcc-cCChhhhhCCCCCcEEecccCcccccccccccCCCCC----CEEEcccccceeecccc---------
Q 042887          237 EIISLHSNRFEG-SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNL----QVLDVYKNHFSGQVKID---------  302 (628)
Q Consensus       237 ~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----~~L~L~~N~i~~~~~~~---------  302 (628)
                      ++|++++|.+++ .+|..+. ++++|++|++++|++++..+..++.+++|    +.|++++|.+++..+..         
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L  205 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL  205 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred             cEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence            888888888874 3566665 48888888888888887777777777777    77788777766554433         


Q ss_pred             ------------------------------------------------------------------------cccCCCCC
Q 042887          303 ------------------------------------------------------------------------FNRLSNLS  310 (628)
Q Consensus       303 ------------------------------------------------------------------------~~~l~~L~  310 (628)
                                                                                              |..+++|+
T Consensus       206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~  285 (570)
T 2z63_A          206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS  285 (570)
T ss_dssp             EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred             ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence                                                                                    34456677


Q ss_pred             EEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCe
Q 042887          311 RLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINA  390 (628)
Q Consensus       311 ~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  390 (628)
                      +|++++|.++.+       +..+..+ +|+.|++++|.+......   .+ ++++.|++++|.+.+..+.  ..+++|+.
T Consensus       286 ~L~l~~~~l~~l-------~~~~~~~-~L~~L~l~~n~~~~l~~~---~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~  351 (570)
T 2z63_A          286 SFSLVSVTIERV-------KDFSYNF-GWQHLELVNCKFGQFPTL---KL-KSLKRLTFTSNKGGNAFSE--VDLPSLEF  351 (570)
T ss_dssp             EEEEESCEECSC-------CBCCSCC-CCSEEEEESCBCSSCCBC---BC-SSCCEEEEESCBSCCBCCC--CBCTTCCE
T ss_pred             EEEecCccchhh-------hhhhccC-CccEEeeccCcccccCcc---cc-cccCEEeCcCCcccccccc--ccCCCCCE
Confidence            777777766543       2345566 899999999999855442   23 3899999999999877665  78999999


Q ss_pred             eeeccccccccC--CcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccC-CcccCCcchhcccceE
Q 042887          391 FGVEYNQLTGTI--PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP-SSLGNCQNLMTLSRLL  467 (628)
Q Consensus       391 L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~l~~~L  467 (628)
                      |++++|++.+..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+++..+ ..+..+++|    +.|
T Consensus       352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----~~L  426 (570)
T 2z63_A          352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL----IYL  426 (570)
T ss_dssp             EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC----CEE
T ss_pred             EeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC----CEE
Confidence            999999998654  67788999999999999999965554 9999999999999999997766 567888888    899


Q ss_pred             EcCCCcCccccchhhhccCCCCEeeCcCCcCc-ccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcc
Q 042887          468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS-NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL  546 (628)
Q Consensus       468 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  546 (628)
                      ++++|.+.+..|..+.++++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence            99999999989999999999999999999998 57889999999999999999999998899999999999999999999


Q ss_pred             cccCchhhhcccCCCeEeccCCcCcccCCCCC
Q 042887          547 SGQIPKYLENLLFLAYLNLSYNHFEGEVPRKG  578 (628)
Q Consensus       547 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~  578 (628)
                      ++.+++.|..+++|+.|++++|++++.+|...
T Consensus       507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            99888899999999999999999999988653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1e-46  Score=409.64  Aligned_cols=421  Identities=19%  Similarity=0.196  Sum_probs=290.6

Q ss_pred             cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcc-cCCcCccCCCCC
Q 042887          158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC-KLPLSIWNISSL  236 (628)
Q Consensus       158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~~L  236 (628)
                      +.++++|++|++++|++++..|+.|.++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..+.++++|
T Consensus        46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A           46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence            4566777777777777777777777777777777777777776666667777777777777777764 245667777777


Q ss_pred             CEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccC
Q 042887          237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK  316 (628)
Q Consensus       237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  316 (628)
                      ++|++++|.+.+.+|...+..+++|++|++++|++++..|..++++++|++|++++|.+.......+..+++|++|++++
T Consensus       126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  205 (549)
T 2z81_A          126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD  205 (549)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred             cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence            77777777744466654455577777777777777777777777777777777777776544443445677888888888


Q ss_pred             CcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhc---cccccEEEccCCcceeeCc--------------
Q 042887          317 NNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL---SAKITVIGMGDNQISGTIP--------------  379 (628)
Q Consensus       317 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~--------------  379 (628)
                      |++++......   .....+++|+.|++++|.+++..+..+...   ..+++.+++++|.+.+...              
T Consensus       206 n~l~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  282 (549)
T 2z81_A          206 TNLARFQFSPL---PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK  282 (549)
T ss_dssp             CBCTTCCCCCC---SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred             Ccccccccccc---chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence            87766432211   122345678888888887776555544322   1367777777777654210              


Q ss_pred             ---------------------hhhhccCCcCeeeeccccccccCCcCC-CCCCCCCeEecccCccccccC---ccccCCC
Q 042887          380 ---------------------SEIKNLVNINAFGVEYNQLTGTIPHAI-GELKNLQGLALVRNSLRGTIP---DTLGNLT  434 (628)
Q Consensus       380 ---------------------~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~  434 (628)
                                           ..+....+|+.+++++|++. .+|..+ ..+++|++|++++|++++..|   ..+..++
T Consensus       283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~  361 (549)
T 2z81_A          283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP  361 (549)
T ss_dssp             CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred             cccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence                                 11122345667777777765 344444 467788888888888776553   2366777


Q ss_pred             CCCeEecCCcccccccC--CcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCC
Q 042887          435 LLNRLFLGFNNLQGNVP--SSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTL  512 (628)
Q Consensus       435 ~L~~L~L~~N~l~~~~~--~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  512 (628)
                      +|++|++++|++++..+  ..+..+++|    +.|++++|+++ .+|..+..+++|++|++++|++++ +|..+  .++|
T Consensus       362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L----~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L  433 (549)
T 2z81_A          362 SLQTLVLSQNHLRSMQKTGEILLTLKNL----TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTL  433 (549)
T ss_dssp             TCCEEECTTSCCCCHHHHHHHGGGCTTC----CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTC
T ss_pred             cCcEEEccCCcccccccchhhhhcCCCC----CEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCc
Confidence            88888888888765432  346666666    77788888887 566677777888888888888763 33332  2578


Q ss_pred             CeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC-CCCCCCCCcccccCC
Q 042887          513 EYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR-KGVFGNRTGIHLIGN  591 (628)
Q Consensus       513 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~n  591 (628)
                      ++|++++|++++..    ..+++|++|+|++|+++ .+|+ ...+++|++|++++|++++.+|. ...+++++.+++++|
T Consensus       434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence            88888888877532    47789999999999998 4555 46788999999999999987775 466788899999999


Q ss_pred             CCCcc
Q 042887          592 ERLCG  596 (628)
Q Consensus       592 ~~~c~  596 (628)
                      ++.|.
T Consensus       508 ~~~~~  512 (549)
T 2z81_A          508 PWDCS  512 (549)
T ss_dssp             CBCCC
T ss_pred             CccCC
Confidence            98885

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.3e-46  Score=417.79  Aligned_cols=411  Identities=19%  Similarity=0.249  Sum_probs=212.6

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEec-ccCcCcccccccc----------------------------------
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDI-SANMLGGRIPDSL----------------------------------  206 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~----------------------------------  206 (628)
                      .+++.|+|++|++.|.+|++|+++++|+.|+| ++|.+.+..|-.-                                  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57999999999999999999999999999999 8886654411100                                  


Q ss_pred             -----------------cCCCCCCEeeccc--ccCcccCCcCccCCCCCCEEEeecccCcc-----------------cC
Q 042887          207 -----------------CQLRSLNYLSISE--NNFSCKLPLSIWNISSLEIISLHSNRFEG-----------------SL  250 (628)
Q Consensus       207 -----------------~~l~~L~~L~Ls~--N~i~~~~p~~~~~l~~L~~L~L~~n~l~~-----------------~~  250 (628)
                                       .....++.+.+..  |++++ +|..|+++++|++|+|++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                             0111222222222  44544 45555555555555555555554                 14


Q ss_pred             Chhhh-hCCCCCcEEecccCcccccccccccCCCCCCEEEccccc-cee-ecccccccCC-------CCCEEEccCCcCC
Q 042887          251 PLNIG-FNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH-FSG-QVKIDFNRLS-------NLSRLFLSKNNLG  320 (628)
Q Consensus       251 ~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~-~~~~~~~~l~-------~L~~L~L~~n~l~  320 (628)
                      |..+. ..+++|++|+|++|++.+.+|..|+++++|++|++++|+ +++ ..|..+..++       +|++|++++|.++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            54442 235555555555555555555555555555555555554 544 3444333332       5555555555554


Q ss_pred             CcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCC-cCeeeecccccc
Q 042887          321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVN-INAFGVEYNQLT  399 (628)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~  399 (628)
                      .++.     ...+.++++|+.|++++|.++. .+ .+..+. +|+.|++++|.+. .+|..+..+++ |+.|++++|.+.
T Consensus       562 ~ip~-----~~~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          562 EFPA-----SASLQKMVKLGLLDCVHNKVRH-LE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             BCCC-----HHHHTTCTTCCEEECTTSCCCB-CC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             ccCC-----hhhhhcCCCCCEEECCCCCccc-ch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence            2211     0134445555555555555542 22 333333 4555555555555 44555555555 555555555555


Q ss_pred             ccCCcCCCCCCC--CCeEecccCccccccCccc---c--CCCCCCeEecCCcccccccCCcc-cCCcchhcccceEEcCC
Q 042887          400 GTIPHAIGELKN--LQGLALVRNSLRGTIPDTL---G--NLTLLNRLFLGFNNLQGNVPSSL-GNCQNLMTLSRLLDLSG  471 (628)
Q Consensus       400 ~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~l~~~L~Ls~  471 (628)
                       .+|..+..++.  |+.|++++|++.+.+|...   .  .+++|+.|++++|+++ .+|..+ ..+++|    +.|+|++
T Consensus       633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L----~~L~Ls~  706 (876)
T 4ecn_A          633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI----STIILSN  706 (876)
T ss_dssp             -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC----SEEECCS
T ss_pred             -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC----CEEECCC
Confidence             44444444432  5555555555554333211   1  2235555555555555 233222 244444    4555555


Q ss_pred             CcCccccchh-hh-------ccCCCCEeeCcCCcCcccCCcccc--CCCCCCeEECcCceeeeecCccccCCCCCCEEEC
Q 042887          472 NLLGGSIPLE-VG-------NLRNLAEFDLSENHFSNEIPVTLS--ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDL  541 (628)
Q Consensus       472 N~l~~~~~~~-~~-------~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  541 (628)
                      |+++ .+|.. +.       ++++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus       707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L  783 (876)
T 4ecn_A          707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI  783 (876)
T ss_dssp             CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred             CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence            5555 22222 11       1125555555555555 3444444  55555555555555553 4555555555555555


Q ss_pred             CC------CcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCC
Q 042887          542 SR------NNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNER  593 (628)
Q Consensus       542 s~------N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~  593 (628)
                      ++      |++.+.+|..|.++++|+.|++++|++ +.+|.. ..++++.+++++|+.
T Consensus       784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPN  839 (876)
T ss_dssp             CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTT
T ss_pred             CCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCC
Confidence            44      445555555555555555555555555 444433 224555555555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.7e-45  Score=400.03  Aligned_cols=402  Identities=19%  Similarity=0.245  Sum_probs=325.7

Q ss_pred             ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCccc-ccccccCCCCCCEeeccccc-CcccCCcCccCCC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGR-IPDSLCQLRSLNYLSISENN-FSCKLPLSIWNIS  234 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~-i~~~~p~~~~~l~  234 (628)
                      .+.++++|++||+++|.+++..|..|+++++|++|++++|.+++. .|..|+.+++|++|++++|. +....+..|.+++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            367889999999999999998888899999999999999999864 56789999999999999998 5544457899999


Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeec---ccccccCCCCCE
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQV---KIDFNRLSNLSR  311 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~l~~L~~  311 (628)
                      +|++|++++|.+++.+|..+. .+++|++|++++|.+....+..+..+++|++|++++|++++..   ......+++|+.
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~  227 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK  227 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred             ccCeeeccCCcccccChhhhh-ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence            999999999999977777776 4999999999999998544444577999999999999998752   223345789999


Q ss_pred             EEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccc------------------------------c----chHH
Q 042887          312 LFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV------------------------------F----LRSI  357 (628)
Q Consensus       312 L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~------------------------------~----~~~~  357 (628)
                      |++++|.+++....  .....+..+++|+.+++++|.+.+.                              .    ...+
T Consensus       228 L~l~~n~l~~~~~~--~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~  305 (549)
T 2z81_A          228 LAFRGSVLTDESFN--ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV  305 (549)
T ss_dssp             EEEESCEEEHHHHH--HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred             eeccccccchhHHH--HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence            99999987642211  1112223334444444444443321                              1    1111


Q ss_pred             HhccccccEEEccCCcceeeCchhh-hccCCcCeeeeccccccccCC---cCCCCCCCCCeEecccCccccccC--cccc
Q 042887          358 ANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIP---HAIGELKNLQGLALVRNSLRGTIP--DTLG  431 (628)
Q Consensus       358 ~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~--~~~~  431 (628)
                      .....+++.+++++|.+. .+|..+ ..+++|+.|++++|++.+..|   ..++.+++|++|++++|++++..+  ..+.
T Consensus       306 ~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  384 (549)
T 2z81_A          306 YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL  384 (549)
T ss_dssp             HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred             hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh
Confidence            222348999999999998 455555 689999999999999987653   457889999999999999986543  5688


Q ss_pred             CCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCC
Q 042887          432 NLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTT  511 (628)
Q Consensus       432 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  511 (628)
                      .+++|++|++++|+++ .+|..+..+++|    +.|++++|+++. +|..+  .++|++|++++|++++..    ..+++
T Consensus       385 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L----~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~  452 (549)
T 2z81_A          385 TLKNLTSLDISRNTFH-PMPDSCQWPEKM----RFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPR  452 (549)
T ss_dssp             GCTTCCEEECTTCCCC-CCCSCCCCCTTC----CEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTT
T ss_pred             cCCCCCEEECCCCCCc-cCChhhcccccc----cEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCCh
Confidence            9999999999999999 678888888888    899999999984 44433  368999999999998643    57899


Q ss_pred             CCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC
Q 042887          512 LEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR  576 (628)
Q Consensus       512 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~  576 (628)
                      |++|++++|+++ .+|. ...+++|++|+|++|++++.+|+.+..+++|+.|++++|++++.+|.
T Consensus       453 L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          453 LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             CCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             hcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            999999999998 6665 46799999999999999999999999999999999999999998774

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-45  Score=404.11  Aligned_cols=360  Identities=18%  Similarity=0.252  Sum_probs=282.2

Q ss_pred             cCcCcccccccccCCCCCCEeecccccCccc-----------------CCcCcc--CCCCCCEEEeecccCcccCChhhh
Q 042887          195 ANMLGGRIPDSLCQLRSLNYLSISENNFSCK-----------------LPLSIW--NISSLEIISLHSNRFEGSLPLNIG  255 (628)
Q Consensus       195 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~  255 (628)
                      +|++++ +|.+|+++++|++|+|++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..+.
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            466776 677777777788888887777764                 777777  777788888887777777776665


Q ss_pred             hCCCCCcEEecccCc-ccc-cccccccCC------CCCCEEEcccccceeeccc--ccccCCCCCEEEccCCcCCCcCCC
Q 042887          256 FNIPNVNFLSVGQNN-FTG-SLPHSFSNA------SNLQVLDVYKNHFSGQVKI--DFNRLSNLSRLFLSKNNLGTESTS  325 (628)
Q Consensus       256 ~~l~~L~~L~L~~N~-l~~-~~~~~~~~l------~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~  325 (628)
                       ++++|++|++++|+ +++ .+|..++++      ++|++|++++|+++ ..|.  .+..+++|++|++++|++++    
T Consensus       271 -~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g----  344 (636)
T 4eco_A          271 -ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG----  344 (636)
T ss_dssp             -TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE----
T ss_pred             -cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc----
Confidence             47778888888777 776 677766665      77788888887777 4555  67777778888887777763    


Q ss_pred             CccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccC--CcCeeeeccccccccCC
Q 042887          326 DLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLV--NINAFGVEYNQLTGTIP  403 (628)
Q Consensus       326 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~  403 (628)
                        ..+ .+..+++|+.|++++|.++ ..+..+..+..+|+.|++++|.++ .+|..+..++  +|+.|++++|.+.+..|
T Consensus       345 --~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          345 --KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             --ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             --chh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence              112 3455667777788877776 444556666523888888888888 6677776654  89999999999999888


Q ss_pred             cCCC-------CCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCc-ccCCc----chhcccceEEcCC
Q 042887          404 HAIG-------ELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSS-LGNCQ----NLMTLSRLLDLSG  471 (628)
Q Consensus       404 ~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~----~L~~l~~~L~Ls~  471 (628)
                      ..+.       .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|.. +....    ++..+ +.|++++
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~  497 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL-TSIDLRF  497 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC-CEEECCS
T ss_pred             hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc-cEEECcC
Confidence            8888       7889999999999999655556677999999999999999 55544 33222    12222 8999999


Q ss_pred             CcCccccchhhh--ccCCCCEeeCcCCcCcccCCccccCCCCCCeEEC------cCceeeeecCccccCCCCCCEEECCC
Q 042887          472 NLLGGSIPLEVG--NLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHL------QGNSFSGSLPLSLKTLKSIKELDLSR  543 (628)
Q Consensus       472 N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~  543 (628)
                      |+++ .+|..+.  .+++|++|+|++|++++ +|..+..+++|++|++      ++|++.+.+|..+..+++|++|+|++
T Consensus       498 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~  575 (636)
T 4eco_A          498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS  575 (636)
T ss_dssp             SCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             CcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence            9999 6777776  89999999999999997 8889999999999999      56888889999999999999999999


Q ss_pred             CcccccCchhhhcccCCCeEeccCCcCccc
Q 042887          544 NNLSGQIPKYLENLLFLAYLNLSYNHFEGE  573 (628)
Q Consensus       544 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  573 (628)
                      |+++ .+|..+.  ++|+.||+++|++...
T Consensus       576 N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          576 NDIR-KVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CcCC-ccCHhHh--CcCCEEECcCCCCccc
Confidence            9995 6777655  7999999999998753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-45  Score=417.06  Aligned_cols=402  Identities=21%  Similarity=0.235  Sum_probs=299.9

Q ss_pred             cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCccccccc--ccCCCCCCEeecccccCcccCC-cCccCCC
Q 042887          158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDS--LCQLRSLNYLSISENNFSCKLP-LSIWNIS  234 (628)
Q Consensus       158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~i~~~~p-~~~~~l~  234 (628)
                      +.++++|++|+|++|.+++..|+.|+++++|++|+|++|.+++..|..  |+.+++|++|+|++|.+++..+ ..|++++
T Consensus        69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~  148 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN  148 (844)
T ss_dssp             TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred             hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence            345555555555555555555555555555555555555555433333  5555555555555555554333 3455555


Q ss_pred             CCCEEEeecccCcccCChhhhhCC--CCCcEEecccCcccccccccccCCCC------CCEEEcccccceeeccccccc-
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNI--PNVNFLSVGQNNFTGSLPHSFSNASN------LQVLDVYKNHFSGQVKIDFNR-  305 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~------L~~L~L~~N~i~~~~~~~~~~-  305 (628)
                      +|++|++++|.+++..+..+.. +  ++|+.|++++|.+.+..|..++.+.+      |++|++++|.+++..+..+.. 
T Consensus       149 ~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  227 (844)
T 3j0a_A          149 SLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA  227 (844)
T ss_dssp             SCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred             CCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence            5555555555555444443332 3  55555666666555555555554444      788888888776544433322 


Q ss_pred             -------------------------------------CCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCC
Q 042887          306 -------------------------------------LSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNK  348 (628)
Q Consensus       306 -------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~  348 (628)
                                                           .++|++|++++|.+....+      ..+..+++|+.|++++|.
T Consensus       228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~  301 (844)
T 3j0a_A          228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKDLKVLNLAYNK  301 (844)
T ss_dssp             SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS------CCSSSCCCCCEEEEESCC
T ss_pred             cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh------hhhhcCCCCCEEECCCCc
Confidence                                                 2679999999999876433      456778899999999999


Q ss_pred             cccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccC-
Q 042887          349 FGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP-  427 (628)
Q Consensus       349 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-  427 (628)
                      +++..+..+..+. +|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++... 
T Consensus       302 i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~  380 (844)
T 3j0a_A          302 INKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI  380 (844)
T ss_dssp             CCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSC
T ss_pred             CCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCC
Confidence            9999888888877 89999999999999989999999999999999999998888889999999999999998874211 


Q ss_pred             ---------------------------------------ccccCCCCCCeEecCCcccccccCC-cccCCcchhcccceE
Q 042887          428 ---------------------------------------DTLGNLTLLNRLFLGFNNLQGNVPS-SLGNCQNLMTLSRLL  467 (628)
Q Consensus       428 ---------------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~l~~~L  467 (628)
                                                             ..+..+++|+.|++++|++++..+. .+..+++|    +.|
T Consensus       381 ~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L----~~L  456 (844)
T 3j0a_A          381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL----EQL  456 (844)
T ss_dssp             CSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC----CBC
T ss_pred             CCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc----ccc
Confidence                                                   1134678999999999999865443 35556677    889


Q ss_pred             EcCCCcCc-----cccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECC
Q 042887          468 DLSGNLLG-----GSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLS  542 (628)
Q Consensus       468 ~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  542 (628)
                      ++++|.++     +..+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..+.  ++|+.|+|+
T Consensus       457 ~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls  534 (844)
T 3j0a_A          457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDIS  534 (844)
T ss_dssp             EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEE
T ss_pred             cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECC
Confidence            99999997     34456788999999999999999999999999999999999999999977776665  899999999


Q ss_pred             CCcccccCchhhhcccCCCeEeccCCcCcccCCC
Q 042887          543 RNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR  576 (628)
Q Consensus       543 ~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~  576 (628)
                      +|++++..|+.|   .+|+.|++++|++.+..+.
T Consensus       535 ~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          535 RNQLLAPNPDVF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             EECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred             CCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence            999999888775   4789999999999987764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.2e-44  Score=395.71  Aligned_cols=426  Identities=19%  Similarity=0.166  Sum_probs=329.1

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      ..+++|||++|+|++..+.+|.++++|++|||++|+|+++.+++|.++++|++|+|++|++++..+.+|.++++|++|+|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            36899999999999988899999999999999999999888999999999999999999999877788999999999999


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCccccc-ccccccCCCCCCEEEcccccceeecccccccCCCCC----EEEccC
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS-LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLS----RLFLSK  316 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~----~L~L~~  316 (628)
                      ++|+++ .+|...+.++++|++|++++|+++.. .|..++.+++|++|++++|++++..+..|..+.+++    .++++.
T Consensus       132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            999998 67777667799999999999999864 578889999999999999999999888887665543    677888


Q ss_pred             CcCCCcCCCCccccc------------------cccCCC-----------------------------------------
Q 042887          317 NNLGTESTSDLDFLT------------------LLTNCS-----------------------------------------  337 (628)
Q Consensus       317 n~l~~~~~~~~~~~~------------------~l~~~~-----------------------------------------  337 (628)
                      |.+..+....+....                  .+..+.                                         
T Consensus       211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            877655443221100                  001111                                         


Q ss_pred             ----------------CCceeecccCCcccccchHHHhccccccEEEccCCcceeeCch-------------------hh
Q 042887          338 ----------------QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS-------------------EI  382 (628)
Q Consensus       338 ----------------~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------------------~l  382 (628)
                                      +++.+.+..+.+....  .+... ..++.|++.+|.+.+..+.                   ..
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~-~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  367 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYN-FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE  367 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSC-CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred             hcccccchhhhhhhhccccccccccccccccc--ccccc-hhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence                            2222222222221111  11111 2566777777766543222                   12


Q ss_pred             hccCCcCeeeeccccccc--cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccC-CcccCCcc
Q 042887          383 KNLVNINAFGVEYNQLTG--TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP-SSLGNCQN  459 (628)
Q Consensus       383 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~  459 (628)
                      ..+++|+.+++++|.+..  ..+..+..+.+|+.++++.|.+.. .+..+..+++|+.++++.|......+ ..+..+.+
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~  446 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  446 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccc
Confidence            345566666666666542  233444556666777776666653 44567778888888888777654443 34566666


Q ss_pred             hhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCc-ccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCE
Q 042887          460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS-NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKE  538 (628)
Q Consensus       460 L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  538 (628)
                      +    +.+++++|.+.+..+..+..++.|++|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++
T Consensus       447 l----~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          447 L----IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  522 (635)
T ss_dssp             C----CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             c----ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence            6    88999999999888999999999999999999854 457888999999999999999999999999999999999


Q ss_pred             EECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCC-CCC-CCCCcccccCCCCCcc
Q 042887          539 LDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK-GVF-GNRTGIHLIGNERLCG  596 (628)
Q Consensus       539 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~-~~l~~~~~~~n~~~c~  596 (628)
                      |+|++|+|++..|..|.++++|++||+++|+|++..|.. ..+ .+++.+++++||+.|.
T Consensus       523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            999999999999999999999999999999999988754 233 6799999999999995

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.5e-45  Score=405.14  Aligned_cols=409  Identities=18%  Similarity=0.229  Sum_probs=332.3

Q ss_pred             CCCCEEecccCcCcccccccccCCCCCCEeec-ccccCcccCCcCc----------------------------------
Q 042887          186 SALEAIDISANMLGGRIPDSLCQLRSLNYLSI-SENNFSCKLPLSI----------------------------------  230 (628)
Q Consensus       186 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~N~i~~~~p~~~----------------------------------  230 (628)
                      ..++.|+|++|.+.+.+|.+|++|++|++|+| ++|.+.+..|...                                  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57999999999999999999999999999999 8898766533210                                  


Q ss_pred             -----------------cCCCCCCEEEeec--ccCcccCChhhhhCCCCCcEEecccCcccc-----------------c
Q 042887          231 -----------------WNISSLEIISLHS--NRFEGSLPLNIGFNIPNVNFLSVGQNNFTG-----------------S  274 (628)
Q Consensus       231 -----------------~~l~~L~~L~L~~--n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------~  274 (628)
                                       .....++.+.+..  |.+++ +|..+. ++++|++|+|++|++++                 .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                             1122344444443  88886 898876 49999999999999998                 3


Q ss_pred             cccccc--CCCCCCEEEcccccceeecccccccCCCCCEEEccCCc-CCC-cCCCCccccc-cccCCCCCceeecccCCc
Q 042887          275 LPHSFS--NASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN-LGT-ESTSDLDFLT-LLTNCSQMEMLYLNTNKF  349 (628)
Q Consensus       275 ~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~~-~l~~~~~L~~L~l~~n~~  349 (628)
                      +|..++  ++++|++|+|++|++.+..|..|..+++|++|++++|+ +++ .-+..+..+. .+..+++|+.|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            888877  99999999999999999999999999999999999998 764 1111112121 455667999999999999


Q ss_pred             ccccch--HHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCC-CCeEecccCcccccc
Q 042887          350 GGVFLR--SIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKN-LQGLALVRNSLRGTI  426 (628)
Q Consensus       350 ~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~  426 (628)
                      + ..+.  .+..+. +|+.|++++|.++ .+| .+..+++|+.|++++|++. .+|..+..+++ |+.|++++|.++ .+
T Consensus       561 ~-~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          561 E-EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             C-BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             C-ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            9 4555  788777 8999999999999 777 8999999999999999999 78888999999 999999999999 67


Q ss_pred             CccccCCCC--CCeEecCCcccccccCCcccC-----CcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCc
Q 042887          427 PDTLGNLTL--LNRLFLGFNNLQGNVPSSLGN-----CQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS  499 (628)
Q Consensus       427 ~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~-----l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  499 (628)
                      |..+..++.  |+.|++++|++++..|.....     +++|    +.|++++|+++...+..+..+++|+.|+|++|+++
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L----~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA----STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE----EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc----CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence            888877654  999999999999876643322     2355    89999999999544444568999999999999999


Q ss_pred             ccCCccccC-C-------CCCCeEECcCceeeeecCcccc--CCCCCCEEECCCCcccccCchhhhcccCCCeEeccC--
Q 042887          500 NEIPVTLSA-C-------TTLEYLHLQGNSFSGSLPLSLK--TLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSY--  567 (628)
Q Consensus       500 ~~~~~~~~~-l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~--  567 (628)
                       .+|..+.. .       ++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++++  
T Consensus       711 -~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          711 -SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             -CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred             -ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence             45544333 2       39999999999999 7888887  99999999999999997 788899999999999976  


Q ss_pred             ----CcCcccCCC-CCCCCCCCcccccCCCC------CcccCCCCCCCCCCCC
Q 042887          568 ----NHFEGEVPR-KGVFGNRTGIHLIGNER------LCGGLEELHLPSCHFG  609 (628)
Q Consensus       568 ----N~l~~~~p~-~~~~~~l~~~~~~~n~~------~c~~~~~l~l~~c~~~  609 (628)
                          |++.+.+|. ...+++++.+++++|..      ++..++.|++++|++.
T Consensus       788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNI  840 (876)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTC
T ss_pred             CcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCC
Confidence                788888874 45688999999999864      2234555677777754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-45  Score=393.00  Aligned_cols=396  Identities=20%  Similarity=0.259  Sum_probs=329.9

Q ss_pred             ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcc-cCCcCccCCCC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC-KLPLSIWNISS  235 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~~  235 (628)
                      .+.++++|++|++++|++++..|+.|+++++|++|+|++|+++ .+|..  .+++|++|+|++|.+++ ..|..|+++++
T Consensus        40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~  116 (520)
T 2z7x_B           40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ  116 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred             hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence            4678899999999999999999999999999999999999999 45555  89999999999999987 46899999999


Q ss_pred             CCEEEeecccCcccCChhhhhCCCCC--cEEecccCcc--cccccccccC--------------------------CCCC
Q 042887          236 LEIISLHSNRFEGSLPLNIGFNIPNV--NFLSVGQNNF--TGSLPHSFSN--------------------------ASNL  285 (628)
Q Consensus       236 L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~~~~~~~--------------------------l~~L  285 (628)
                      |++|++++|.+++    ..+..+++|  +.|++++|.+  .+..|..+..                          +++|
T Consensus       117 L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L  192 (520)
T 2z7x_B          117 LKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL  192 (520)
T ss_dssp             CCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred             ceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence            9999999999984    223458888  9999999999  6666666655                          6677


Q ss_pred             CEEEccccc-------ceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHH-
Q 042887          286 QVLDVYKNH-------FSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI-  357 (628)
Q Consensus       286 ~~L~L~~N~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-  357 (628)
                      +.|++++|.       +.+..+ .+..+++|+.|++++|.+++.....  .... ...++|+.|++++|.+++..+..+ 
T Consensus       193 ~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~-~~~~~L~~L~l~~n~l~~~~p~~~~  268 (520)
T 2z7x_B          193 ELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIR--ILQL-VWHTTVWYFSISNVKLQGQLDFRDF  268 (520)
T ss_dssp             EECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHH--HHHH-HHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred             eeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHH--HHHH-hhhCcccEEEeecccccCccccchh
Confidence            777887776       555544 6778888888888888775421110  1111 124589999999999987777766 


Q ss_pred             ----HhccccccEEEccCCcceeeCc-hhhhcc---CCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCcc
Q 042887          358 ----ANLSAKITVIGMGDNQISGTIP-SEIKNL---VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDT  429 (628)
Q Consensus       358 ----~~~~~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  429 (628)
                          ..+. +++.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++..|..
T Consensus       269 ~~~~~~l~-~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~  343 (520)
T 2z7x_B          269 DYSGTSLK-ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFEN  343 (520)
T ss_dssp             CCCSCCCC-EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             hcccccCc-eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhh
Confidence                5555 899999999999  445 556555   78999999999987432  2368899999999999999889999


Q ss_pred             ccCCCCCCeEecCCccccc--ccCCcccCCcchhcccceEEcCCCcCccccch-hhhccCCCCEeeCcCCcCcccCCccc
Q 042887          430 LGNLTLLNRLFLGFNNLQG--NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL-EVGNLRNLAEFDLSENHFSNEIPVTL  506 (628)
Q Consensus       430 ~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~  506 (628)
                      +..+++|++|++++|++++  ..|..+..+++|    +.|++++|++++.+|. .+..+++|++|++++|++++..|..+
T Consensus       344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L----~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  419 (520)
T 2z7x_B          344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSL----QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL  419 (520)
T ss_dssp             CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC----CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred             hccCCCCCEEEccCCccCccccchHHHhhCCCC----CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence            9999999999999999986  456778888888    8999999999984555 48889999999999999988777666


Q ss_pred             cCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887          507 SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       507 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  575 (628)
                      .  ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..|..+++|++|++++|++++..+
T Consensus       420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            4  79999999999999 788888899999999999999996555559999999999999999998765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.8e-44  Score=392.26  Aligned_cols=411  Identities=18%  Similarity=0.193  Sum_probs=259.6

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      +++++||+++|.+++..|+.|.++++|++|+|++|.+++..|++|.++++|++|+|++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            46677777777777666667777777777777777777666667777777777777777776 34444  6677777777


Q ss_pred             ecccCcccCC--hhhhhCCCCCcEEecccCcccccccccccCCCCC--CEEEcccccc--eeecccccccCC-CCCEEEc
Q 042887          242 HSNRFEGSLP--LNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNL--QVLDVYKNHF--SGQVKIDFNRLS-NLSRLFL  314 (628)
Q Consensus       242 ~~n~l~~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~i--~~~~~~~~~~l~-~L~~L~L  314 (628)
                      ++|.++ .+|  ..+ .++++|++|++++|+++..   .+..+++|  ++|++++|++  ++..+..|..+. ..-.+++
T Consensus       129 s~N~l~-~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          129 SFNDFD-VLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             CSSCCS-BCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             CCCCcc-ccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            777776 333  333 3477777777777776642   34444444  7777777766  555555554432 0112233


Q ss_pred             cCCcCCCcCCCCccccccccCCCCCceeecccC----------------------------CcccccchHHHhc--cccc
Q 042887          315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTN----------------------------KFGGVFLRSIANL--SAKI  364 (628)
Q Consensus       315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n----------------------------~~~~~~~~~~~~~--~~~L  364 (628)
                      +.|.+.....     ...+..+++|+.+++++|                            .+.+.....+...  ..++
T Consensus       204 ~~n~~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L  278 (562)
T 3a79_B          204 HPNSLFSVQV-----NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV  278 (562)
T ss_dssp             CSSSCCCCCC-----EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred             cCccchhhhh-----hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence            3333322100     011223344444554444                            3333222111110  1267


Q ss_pred             cEEEccCCcceeeCchhh-----hccCCcCeeeeccccccccCC-cCCCC---CCCCCeEecccCccccccCccccCCCC
Q 042887          365 TVIGMGDNQISGTIPSEI-----KNLVNINAFGVEYNQLTGTIP-HAIGE---LKNLQGLALVRNSLRGTIPDTLGNLTL  435 (628)
Q Consensus       365 ~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~  435 (628)
                      +.|++++|.+.+.+|..+     .+++.|+.+++..+.+  .+| ..+..   ..+|++|++++|.+....  ....+++
T Consensus       279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~  354 (562)
T 3a79_B          279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSS  354 (562)
T ss_dssp             EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCC
T ss_pred             cEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCC
Confidence            777777777776666655     5555555555555544  122 11111   145777777777765322  1256788


Q ss_pred             CCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc--cchhhhccCCCCEeeCcCCcCcccCC-ccccCCCCC
Q 042887          436 LNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS--IPLEVGNLRNLAEFDLSENHFSNEIP-VTLSACTTL  512 (628)
Q Consensus       436 L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L  512 (628)
                      |++|++++|++++..|..+.++++|    +.|++++|++++.  .|..+.++++|++|++++|++++.+| ..+..+++|
T Consensus       355 L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          355 FTFLNFTQNVFTDSVFQGCSTLKRL----QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             CCEEECCSSCCCTTTTTTCCSCSSC----CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             ceEEECCCCccccchhhhhcccCCC----CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            8888888888887778888888877    7888888888863  34567888888888888888887344 457778888


Q ss_pred             CeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC-CCCCCCCCcccccCC
Q 042887          513 EYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR-KGVFGNRTGIHLIGN  591 (628)
Q Consensus       513 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~n  591 (628)
                      ++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++++.++. ...+++++.+++++|
T Consensus       431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred             CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence            8888888888766665543  68888888888888 4555555888888888888888854443 456677888888888


Q ss_pred             CCCcc
Q 042887          592 ERLCG  596 (628)
Q Consensus       592 ~~~c~  596 (628)
                      |+.|.
T Consensus       508 ~~~c~  512 (562)
T 3a79_B          508 PWDCT  512 (562)
T ss_dssp             CBCCC
T ss_pred             CcCCC
Confidence            88874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3e-43  Score=373.16  Aligned_cols=385  Identities=18%  Similarity=0.193  Sum_probs=309.2

Q ss_pred             cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcc-cCCcCccCCCCCCEEEeec
Q 042887          165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC-KLPLSIWNISSLEIISLHS  243 (628)
Q Consensus       165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~~L~~L~L~~  243 (628)
                      +.++.+++.++. +|. +  .++|++|+|++|.+++..|..|+++++|++|++++|.+.+ ..+..|.++++|++|++++
T Consensus        13 ~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            568888888874 554 3  3799999999999998889999999999999999999874 4477899999999999999


Q ss_pred             ccCcccCChhhhhCCCCCcEEecccCccccccccc--ccCCCCCCEEEcccccceeecccc-cccCCCCCEEEccCCcCC
Q 042887          244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS--FSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLG  320 (628)
Q Consensus       244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~n~l~  320 (628)
                      |.+++..|..+. .+++|++|++++|++++..+..  |+++++|++|++++|++++..+.. |..+++|++|++++|.++
T Consensus        89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            999855565554 6999999999999999755554  999999999999999999887766 889999999999999998


Q ss_pred             CcCCCCccccccccCCCCCceeecccCCcccccchHHH--------hccccccEEEccCCcceeeCchhhhcc---CCcC
Q 042887          321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA--------NLSAKITVIGMGDNQISGTIPSEIKNL---VNIN  389 (628)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~~l~~l---~~L~  389 (628)
                      ...+..+...    ...+++.|++++|.+.+.....+.        .. .+++.|++++|.+.+..|..+...   ++|+
T Consensus       168 ~~~~~~l~~l----~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~  242 (455)
T 3v47_A          168 SICEEDLLNF----QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQ  242 (455)
T ss_dssp             CCCTTTSGGG----TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred             ccChhhhhcc----ccccccccccccCcccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhcccccccee
Confidence            7655433221    125788888888888765543322        11 257777777777776666655444   6666


Q ss_pred             eeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccC--CCCCCeEecCCcccccccCCcccCCcchhcccceE
Q 042887          390 AFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGN--LTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLL  467 (628)
Q Consensus       390 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L  467 (628)
                      .+++++|.+.+..              +..+.+.+..+..+..  .++|+.|++++|++++..|..+..+++|    +.|
T Consensus       243 ~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L  304 (455)
T 3v47_A          243 SLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL----EQL  304 (455)
T ss_dssp             EEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC----CEE
T ss_pred             eEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC----CEE
Confidence            7777666554321              1111222222222222  3689999999999998888889988888    889


Q ss_pred             EcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887          468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       468 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  547 (628)
                      ++++|++.+..|..|.++++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus       305 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence            99999999888889999999999999999999888889999999999999999999888999999999999999999999


Q ss_pred             ccCchhhhcccCCCeEeccCCcCcccCCCC
Q 042887          548 GQIPKYLENLLFLAYLNLSYNHFEGEVPRK  577 (628)
Q Consensus       548 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~  577 (628)
                      +..++.|..+++|++|++++|++++.+|..
T Consensus       385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          385 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            877788899999999999999999998854

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-42  Score=367.80  Aligned_cols=372  Identities=18%  Similarity=0.188  Sum_probs=320.6

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcc-cccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEE
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGG-RIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIIS  240 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~  240 (628)
                      ++|++|||++|.+++..|..|+++++|++|++++|.+.+ +.+..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            579999999999999999999999999999999999974 4477899999999999999999988899999999999999


Q ss_pred             eecccCcccCChh-hhhCCCCCcEEecccCccccccccc-ccCCCCCCEEEcccccceeecccccccC--CCCCEEEccC
Q 042887          241 LHSNRFEGSLPLN-IGFNIPNVNFLSVGQNNFTGSLPHS-FSNASNLQVLDVYKNHFSGQVKIDFNRL--SNLSRLFLSK  316 (628)
Q Consensus       241 L~~n~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l--~~L~~L~L~~  316 (628)
                      +++|.+++.+|.. .+..+++|++|++++|++++..|.. +.++++|++|++++|++++..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999998644443 3456999999999999999887876 8999999999999999999988888876  7899999999


Q ss_pred             CcCCCcCCCCcc--ccccccCCCCCceeecccCCcccccchHHHhcc--ccccEEEccCCcceeeCchhhhccCCcCeee
Q 042887          317 NNLGTESTSDLD--FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLS--AKITVIGMGDNQISGTIPSEIKNLVNINAFG  392 (628)
Q Consensus       317 n~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  392 (628)
                      |.+.......+.  ....+..+++|+.|++++|.+++..+..+....  .+++.+++++|.+.+..              
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------  255 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------  255 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------
Confidence            999886654322  122344668999999999999988888776652  48999999999865431              


Q ss_pred             eccccccccCCcCCCC--CCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcC
Q 042887          393 VEYNQLTGTIPHAIGE--LKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLS  470 (628)
Q Consensus       393 l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls  470 (628)
                      +..+.+.+..+..+..  .++|++|++++|.+++..|..+..+++|++|++++|++++..|..+.++++|    +.|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~Ls  331 (455)
T 3v47_A          256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL----LKLNLS  331 (455)
T ss_dssp             TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC----CEEECC
T ss_pred             cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC----CEEECC
Confidence            1222222222233333  3689999999999999999999999999999999999998889999999998    899999


Q ss_pred             CCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccC
Q 042887          471 GNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQI  550 (628)
Q Consensus       471 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  550 (628)
                      +|++++..+..+.++++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus       332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            99999888899999999999999999999888999999999999999999999877778899999999999999999877


Q ss_pred             c
Q 042887          551 P  551 (628)
Q Consensus       551 ~  551 (628)
                      |
T Consensus       412 ~  412 (455)
T 3v47_A          412 P  412 (455)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.6e-42  Score=373.37  Aligned_cols=398  Identities=18%  Similarity=0.207  Sum_probs=307.9

Q ss_pred             cccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCccc-CCcCccCCC
Q 042887          156 IQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCK-LPLSIWNIS  234 (628)
Q Consensus       156 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~p~~~~~l~  234 (628)
                      ..+.++++|++|++++|++++..|+.|.++++|++|||++|.++ .+|..  .+++|++|+|++|.+++. .|..|++++
T Consensus        70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~  146 (562)
T 3a79_B           70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT  146 (562)
T ss_dssp             GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred             hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence            35678999999999999999999999999999999999999999 45555  899999999999999863 468999999


Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCC--cEEecccCcc--cccccccccCCC--CCCEEEcccccceeecc-cccccCC
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNV--NFLSVGQNNF--TGSLPHSFSNAS--NLQVLDVYKNHFSGQVK-IDFNRLS  307 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~~~~~~~l~--~L~~L~L~~N~i~~~~~-~~~~~l~  307 (628)
                      +|++|++++|.+++ ..   +..+++|  +.|++++|.+  ++..|..+..+.  .+ .+++++|.+.+..+ ..+..++
T Consensus       147 ~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~  221 (562)
T 3a79_B          147 KLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALG  221 (562)
T ss_dssp             TCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEE
T ss_pred             cccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccc
Confidence            99999999999984 22   2235666  9999999999  777787777654  22 34555555543222 2233445


Q ss_pred             CCCEEEccCC----------------------------cCCCcCCCCccccccccCCCCCceeecccCCcccccchHH--
Q 042887          308 NLSRLFLSKN----------------------------NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI--  357 (628)
Q Consensus       308 ~L~~L~L~~n----------------------------~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~--  357 (628)
                      +|+.|++++|                            .+......   ........++|++|++++|.+++..+..+  
T Consensus       222 ~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~  298 (562)
T 3a79_B          222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV---KLFQFFWPRPVEYLNIYNLTITERIDREEFT  298 (562)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH---HHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred             eEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH---HHHHhhhcccccEEEEeccEeeccccchhhh
Confidence            5555555554                            33221000   00011123489999999999987666655  


Q ss_pred             ---HhccccccEEEccCCcceeeCc-hhhhcc---CCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccc
Q 042887          358 ---ANLSAKITVIGMGDNQISGTIP-SEIKNL---VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTL  430 (628)
Q Consensus       358 ---~~~~~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  430 (628)
                         ..+. .+..+++..+.+  .+| ..+..+   .+|+.|++++|.+....  ....+++|++|++++|++++..|..+
T Consensus       299 ~~~~~L~-~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~  373 (562)
T 3a79_B          299 YSETALK-SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC  373 (562)
T ss_dssp             CCSCSCC-EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             cccccch-heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh
Confidence               3333 566666666666  334 333333   67999999999986332  23788999999999999998899999


Q ss_pred             cCCCCCCeEecCCcccccc--cCCcccCCcchhcccceEEcCCCcCccccc-hhhhccCCCCEeeCcCCcCcccCCcccc
Q 042887          431 GNLTLLNRLFLGFNNLQGN--VPSSLGNCQNLMTLSRLLDLSGNLLGGSIP-LEVGNLRNLAEFDLSENHFSNEIPVTLS  507 (628)
Q Consensus       431 ~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  507 (628)
                      ..+++|++|++++|++++.  .|..+.++++|    +.|++++|++++.+| ..+..+++|++|++++|++++..|..+.
T Consensus       374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L----~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  449 (562)
T 3a79_B          374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSL----ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP  449 (562)
T ss_dssp             CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC----CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred             cccCCCCEEECCCCCcCCcccchhhhcCCCCC----CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence            9999999999999999863  34668888888    899999999998444 4588999999999999999877666554


Q ss_pred             CCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC
Q 042887          508 ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR  576 (628)
Q Consensus       508 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~  576 (628)
                        ++|++|++++|+++ .+|..+..+++|++|+|++|+++..++..+..+++|+.|++++|++.+..|.
T Consensus       450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence              79999999999999 6777777999999999999999955444599999999999999999987663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.5e-40  Score=366.21  Aligned_cols=411  Identities=19%  Similarity=0.233  Sum_probs=332.7

Q ss_pred             ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL  236 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L  236 (628)
                      .+.++++|++|||++|+|+++.|++|.++++|++|+|++|++++..+.+|.++++|++|+|++|++++..+..|+++++|
T Consensus        71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L  150 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  150 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence            46788999999999999999889999999999999999999998888899999999999999999998777889999999


Q ss_pred             CEEEeecccCccc-CChhhhhCCCCCcEEecccCcccccccccccCCCCCC----EEEcccccceeecccccccCCCCCE
Q 042887          237 EIISLHSNRFEGS-LPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQ----VLDVYKNHFSGQVKIDFNRLSNLSR  311 (628)
Q Consensus       237 ~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~N~i~~~~~~~~~~l~~L~~  311 (628)
                      ++|++++|.+++. +|..+ ..+++|++|++++|++++..+..|..+.+++    .++++.|.++.+.+..+.. ..++.
T Consensus       151 ~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~  228 (635)
T 4g8a_A          151 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHK  228 (635)
T ss_dssp             CEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEE
T ss_pred             CeeccccCccccCCCchhh-ccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhh
Confidence            9999999999743 34444 4599999999999999988888887665543    6778888877655543322 22333


Q ss_pred             EEccCCcCC-------------------------------CcCCCC---------------------------c------
Q 042887          312 LFLSKNNLG-------------------------------TESTSD---------------------------L------  327 (628)
Q Consensus       312 L~L~~n~l~-------------------------------~~~~~~---------------------------~------  327 (628)
                      +++.+|...                               ......                           +      
T Consensus       229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l  308 (635)
T 4g8a_A          229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV  308 (635)
T ss_dssp             EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred             hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence            333332111                               000000                           0      


Q ss_pred             ----------cccccccCCCCCceeecccCCcccccchHHH-------------------hccccccEEEccCCccee--
Q 042887          328 ----------DFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA-------------------NLSAKITVIGMGDNQISG--  376 (628)
Q Consensus       328 ----------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-------------------~~~~~L~~L~l~~n~l~~--  376 (628)
                                .....+.....++.|++.+|.+.......+.                   .+ ++++.+++++|.+..  
T Consensus       309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l-~~L~~L~ls~n~l~~~~  387 (635)
T 4g8a_A          309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKG  387 (635)
T ss_dssp             SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC-TTCCEEECCSSCCBEEE
T ss_pred             ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc-cccccchhhcccccccc
Confidence                      0011233445677777777765543322111                   22 378999999998863  


Q ss_pred             eCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccC-ccccCCCCCCeEecCCcccccccCCccc
Q 042887          377 TIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTLGNLTLLNRLFLGFNNLQGNVPSSLG  455 (628)
Q Consensus       377 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~  455 (628)
                      ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++++|......+ ..|..+++++.++++.|.+.+..+..+.
T Consensus       388 ~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~  466 (635)
T 4g8a_A          388 CCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN  466 (635)
T ss_dssp             ECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             ccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence            456778889999999999999874 56678899999999999988775544 5678899999999999999999999999


Q ss_pred             CCcchhcccceEEcCCCcCc-cccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCC
Q 042887          456 NCQNLMTLSRLLDLSGNLLG-GSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLK  534 (628)
Q Consensus       456 ~l~~L~~l~~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  534 (628)
                      .++.+    +.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|.+++
T Consensus       467 ~~~~L----~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  542 (635)
T 4g8a_A          467 GLSSL----EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  542 (635)
T ss_dssp             TCTTC----CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred             cchhh----hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence            99888    89999999854 45788899999999999999999999999999999999999999999988889999999


Q ss_pred             CCCEEECCCCcccccCchhhhcc-cCCCeEeccCCcCcccCC
Q 042887          535 SIKELDLSRNNLSGQIPKYLENL-LFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       535 ~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p  575 (628)
                      +|++|||++|+|++..|+.+..+ ++|++|++++|++.+...
T Consensus       543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999999999999999999998 689999999999998765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.3e-39  Score=338.93  Aligned_cols=347  Identities=26%  Similarity=0.355  Sum_probs=224.7

Q ss_pred             CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      ..+++++.|+++++.+.. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            356789999999999875 45 38889999999999999986654  9999999999999999986544  999999999


Q ss_pred             EEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc
Q 042887          239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN  318 (628)
Q Consensus       239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~  318 (628)
                      |++++|.++ .++.  +..+++|++|++++|.+++. + .+.++++|++|+++ |.+.+..  .+..+++|++|++++|.
T Consensus       117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence            999999998 5554  44699999999999998854 3 58899999999996 4555443  38889999999999998


Q ss_pred             CCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccc
Q 042887          319 LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL  398 (628)
Q Consensus       319 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  398 (628)
                      ++.+        ..+..+++|+.|++++|.+.+..+  +..+. +|+.|++++|.+.+.  ..+.               
T Consensus       189 l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~---------------  240 (466)
T 1o6v_A          189 VSDI--------SVLAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDI--GTLA---------------  240 (466)
T ss_dssp             CCCC--------GGGGGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC--GGGG---------------
T ss_pred             CCCC--------hhhccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCCCcccc--hhhh---------------
Confidence            8653        235666777777777777665433  22222 455555555554432  2344               


Q ss_pred             cccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCcccc
Q 042887          399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSI  478 (628)
Q Consensus       399 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~  478 (628)
                               .+++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|    +.|++++|++.+..
T Consensus       241 ---------~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L----~~L~L~~n~l~~~~  303 (466)
T 1o6v_A          241 ---------SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL----TNLELNENQLEDIS  303 (466)
T ss_dssp             ---------GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC----SEEECCSSCCSCCG
T ss_pred             ---------cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc----CeEEcCCCcccCch
Confidence                     44455555555555443322  4445555555555555543222  4444444    45555555555332


Q ss_pred             chhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhccc
Q 042887          479 PLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL  558 (628)
Q Consensus       479 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  558 (628)
                      +  +..+++|++|++++|++++..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++..|  +..++
T Consensus       304 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~  375 (466)
T 1o6v_A          304 P--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT  375 (466)
T ss_dssp             G--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred             h--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC
Confidence            2  4455555555555555554333  44555555555555555532  245555555555555555554444  55555


Q ss_pred             CCCeEeccCCcCcc
Q 042887          559 FLAYLNLSYNHFEG  572 (628)
Q Consensus       559 ~L~~L~ls~N~l~~  572 (628)
                      +|+.|++++|++++
T Consensus       376 ~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          376 RITQLGLNDQAWTN  389 (466)
T ss_dssp             TCCEEECCCEEEEC
T ss_pred             CCCEEeccCCcccC
Confidence            55555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.5e-39  Score=338.85  Aligned_cols=346  Identities=25%  Similarity=0.353  Sum_probs=287.9

Q ss_pred             CCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcE
Q 042887          184 NFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNF  263 (628)
Q Consensus       184 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  263 (628)
                      .+++++.|+++++.+.. +| .+..+++|++|++++|.+++..+  +.++++|++|++++|.++ .++.  +..+++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCE
Confidence            46789999999999984 44 48889999999999999986544  999999999999999998 4554  446999999


Q ss_pred             EecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceee
Q 042887          264 LSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLY  343 (628)
Q Consensus       264 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~  343 (628)
                      |++++|++++..+  +.++++|++|++++|.+++..  .+..+++|++|+++ |.+..        ...+.++++|+.|+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~--------~~~~~~l~~L~~L~  183 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTD--------LKPLANLTTLERLD  183 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCC--------CGGGTTCTTCCEEE
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccC--------chhhccCCCCCEEE
Confidence            9999999996543  899999999999999998643  48889999999986 33332        12256667777777


Q ss_pred             cccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccc
Q 042887          344 LNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLR  423 (628)
Q Consensus       344 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  423 (628)
                      +++|.+.+.                           ..+..+++|+.|++++|.+.+..|  ++.+++|++|++++|.++
T Consensus       184 l~~n~l~~~---------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          184 ISSNKVSDI---------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             CCSSCCCCC---------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             CcCCcCCCC---------------------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence            777665432                           236778888999999998886554  677899999999999998


Q ss_pred             cccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCC
Q 042887          424 GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIP  503 (628)
Q Consensus       424 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  503 (628)
                      +.  ..+..+++|+.|++++|++++..+  +..+++|    +.|++++|.+++..+  +..+++|++|++++|++++..+
T Consensus       235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L----~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  304 (466)
T 1o6v_A          235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL----TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP  304 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC----SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG
T ss_pred             cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCC----CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh
Confidence            53  468899999999999999986655  7788888    899999999996544  8899999999999999996544


Q ss_pred             ccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCC
Q 042887          504 VTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNR  583 (628)
Q Consensus       504 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l  583 (628)
                        +..+++|+.|++++|++++..|  +..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.+| ...++++
T Consensus       305 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L  377 (466)
T 1o6v_A          305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRI  377 (466)
T ss_dssp             --GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred             --hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCC
Confidence              7899999999999999997665  78999999999999999965  478999999999999999999888 6678899


Q ss_pred             CcccccCCCCCc
Q 042887          584 TGIHLIGNERLC  595 (628)
Q Consensus       584 ~~~~~~~n~~~c  595 (628)
                      +.+++.+|++..
T Consensus       378 ~~L~l~~n~~~~  389 (466)
T 1o6v_A          378 TQLGLNDQAWTN  389 (466)
T ss_dssp             CEEECCCEEEEC
T ss_pred             CEEeccCCcccC
Confidence            999999987654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=345.65  Aligned_cols=346  Identities=21%  Similarity=0.212  Sum_probs=247.5

Q ss_pred             CEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccc
Q 042887          213 NYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYK  292 (628)
Q Consensus       213 ~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  292 (628)
                      +.++.+++.++ .+|..+.  +++++|+|++|.++ .++...+..+++|++|+|++|.+++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45666666665 3454432  45666666666666 33333333466666666666666665566666666666666666


Q ss_pred             ccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCC
Q 042887          293 NHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDN  372 (628)
Q Consensus       293 N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  372 (628)
                      |+++.+.+..|..+++|++|++++|.+..                              ..+..+..+. +|+.|++++|
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------------------~~~~~~~~l~-~L~~L~l~~n  138 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVI------------------------------LLDYMFQDLY-NLKSLEVGDN  138 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCE------------------------------ECTTTTTTCT-TCCEEEECCT
T ss_pred             CcCCccCcccccCCCCCCEEECCCCcccc------------------------------CChhHccccc-cCCEEECCCC
Confidence            66665555556666666666666666554                              3333333333 5555566666


Q ss_pred             cceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCC
Q 042887          373 QISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPS  452 (628)
Q Consensus       373 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  452 (628)
                      .+.+..+..|.++++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+..|.
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP  218 (477)
T ss_dssp             TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred             ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence            66666667777888888888888888766666778888888888888888877777788888888888888777666766


Q ss_pred             cccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccC
Q 042887          453 SLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKT  532 (628)
Q Consensus       453 ~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  532 (628)
                      ......+|    +.|++++|++++..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..|..
T Consensus       219 ~~~~~~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  294 (477)
T 2id5_A          219 NCLYGLNL----TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG  294 (477)
T ss_dssp             TTTTTCCC----SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred             ccccCccc----cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence            66665666    78888888888655567888899999999999988877888888899999999999998888888888


Q ss_pred             CCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCccc
Q 042887          533 LKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGG  597 (628)
Q Consensus       533 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  597 (628)
                      +++|+.|+|++|++++..+..|..+++|++|++++|++.+..+....+.......+.++...|..
T Consensus       295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~  359 (477)
T 2id5_A          295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT  359 (477)
T ss_dssp             CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred             cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence            99999999999999887777888888999999999998876654433334444566677777754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.6e-39  Score=341.19  Aligned_cols=351  Identities=21%  Similarity=0.248  Sum_probs=258.5

Q ss_pred             cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887          165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN  244 (628)
Q Consensus       165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n  244 (628)
                      +.++.++++++ .+|..+  .++++.|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            46778888877 455544  358889999999998888888999999999999999998888888999999999999999


Q ss_pred             cCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCC
Q 042887          245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTEST  324 (628)
Q Consensus       245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  324 (628)
                      .++ .+|...+..+++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+++.++.
T Consensus        91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            988 6777766678888999998888888888888888899999999998888888888888888888888887765321


Q ss_pred             CCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCc
Q 042887          325 SDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPH  404 (628)
Q Consensus       325 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  404 (628)
                            ..+..++                         +|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.
T Consensus       170 ------~~l~~l~-------------------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          170 ------EALSHLH-------------------------GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP  218 (477)
T ss_dssp             ------HHHTTCT-------------------------TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred             ------hHhcccC-------------------------CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence                  1233333                         444444445555555556677788888888888877666666


Q ss_pred             CCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhc
Q 042887          405 AIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGN  484 (628)
Q Consensus       405 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~  484 (628)
                      ......+|+.|++++|++++..+..+..+++|+.|++++|++++..+..+.++++|    +.|++++|++++..|..|.+
T Consensus       219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~  294 (477)
T 2id5_A          219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL----QEIQLVGGQLAVVEPYAFRG  294 (477)
T ss_dssp             TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC----CEEECCSSCCSEECTTTBTT
T ss_pred             ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC----CEEECCCCccceECHHHhcC
Confidence            66666688888888888886555677788888888888888887777777777777    77788888887777777777


Q ss_pred             cCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhh
Q 042887          485 LRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLE  555 (628)
Q Consensus       485 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  555 (628)
                      +++|++|++++|++++..+..|..+++|++|++++|++...-+ ...-...+..+++.++...-..|..+.
T Consensus       295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~-~~~~~~~~~~~~~~~~~~~C~~p~~~~  364 (477)
T 2id5_A          295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR-LLWVFRRRWRLNFNRQQPTCATPEFVQ  364 (477)
T ss_dssp             CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG-GHHHHTTTTSSCCTTCCCBEEESGGGT
T ss_pred             cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc-hHhHHhhhhccccCccCceeCCchHHc
Confidence            7888888888888776666667777778888888877764221 111112233344555555444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.1e-39  Score=340.66  Aligned_cols=368  Identities=22%  Similarity=0.274  Sum_probs=212.9

Q ss_pred             cCCcCcccEEEccCCccccccchhhhCCCCC-------------CEEecccCcCcccccccccCCCCCCEeecccccCcc
Q 042887          158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSAL-------------EAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC  224 (628)
Q Consensus       158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~  224 (628)
                      ++++++|++|++++|.+.+.+|..++.+++|             ++|++++|.+++ +|..   .++|++|++++|.+++
T Consensus        30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~  105 (454)
T 1jl5_A           30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE  105 (454)
T ss_dssp             ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS
T ss_pred             HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc
Confidence            4566667777777777766666666666553             677777776664 2321   3567777777777764


Q ss_pred             cCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccc
Q 042887          225 KLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFN  304 (628)
Q Consensus       225 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~  304 (628)
                       +|..   +++|++|++++|.++ .+|..    .++|++|++++|++++ +| .|+++++|++|++++|+++++ |..  
T Consensus       106 -lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~~--  171 (454)
T 1jl5_A          106 -LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PDL--  171 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CCC--
T ss_pred             -cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CCC--
Confidence             4532   366777777777776 34421    2567777777777775 44 477777777777777777653 222  


Q ss_pred             cCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhc
Q 042887          305 RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKN  384 (628)
Q Consensus       305 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  384 (628)
                       .++|++|++++|+++.++        .+..+++|+.|++++|.+++...     ...+++.|++++|.+. .+| .+..
T Consensus       172 -~~~L~~L~L~~n~l~~l~--------~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~n~l~-~lp-~~~~  235 (454)
T 1jl5_A          172 -PPSLEFIAAGNNQLEELP--------ELQNLPFLTAIYADNNSLKKLPD-----LPLSLESIVAGNNILE-ELP-ELQN  235 (454)
T ss_dssp             -CTTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCS-SCC-CCTT
T ss_pred             -cccccEEECcCCcCCcCc--------cccCCCCCCEEECCCCcCCcCCC-----CcCcccEEECcCCcCC-ccc-ccCC
Confidence             246777777777766532        25566777777777777765321     2236777777777776 445 3677


Q ss_pred             cCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhccc
Q 042887          385 LVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLS  464 (628)
Q Consensus       385 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~  464 (628)
                      +++|+.|++++|++.+ +|..   +++|+.|++++|++++ +|..   .++|++|++++|++++. |..   .++|    
T Consensus       236 l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L----  299 (454)
T 1jl5_A          236 LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNL----  299 (454)
T ss_dssp             CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTC----
T ss_pred             CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcC----
Confidence            7777777777777764 3332   3677777777777774 3432   36777777777777652 211   1334    


Q ss_pred             ceEEcCCCcCccccchhhhcc-CCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCC
Q 042887          465 RLLDLSGNLLGGSIPLEVGNL-RNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSR  543 (628)
Q Consensus       465 ~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  543 (628)
                      +.|++++|++++. +    .+ ++|++|++++|++++ +|..   +++|++|++++|+++ .+|.   .+++|++|++++
T Consensus       300 ~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~  366 (454)
T 1jl5_A          300 YYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEY  366 (454)
T ss_dssp             CEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             CEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCC
Confidence            6677777777642 1    22 477778888887775 4433   467778888888777 4554   357778888888


Q ss_pred             Ccccc--cCchhhhcc-------------cCCCeEeccCCcCcc--cCCCCCCCCCCCcccccCCCC
Q 042887          544 NNLSG--QIPKYLENL-------------LFLAYLNLSYNHFEG--EVPRKGVFGNRTGIHLIGNER  593 (628)
Q Consensus       544 N~l~~--~~~~~~~~l-------------~~L~~L~ls~N~l~~--~~p~~~~~~~l~~~~~~~n~~  593 (628)
                      |++++  .+|.++..+             ++|+.|++++|++++  .+|     .+++.+.+.+|..
T Consensus       367 N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~~~  428 (454)
T 1jl5_A          367 NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP-----ESVEDLRMNSERV  428 (454)
T ss_dssp             SCCSSCCCCCTTCCEEECCC-----------------------------------------------
T ss_pred             CCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch-----hhHhheeCcCccc
Confidence            88776  566777666             667777777777776  444     2344455554443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.2e-39  Score=336.51  Aligned_cols=352  Identities=17%  Similarity=0.210  Sum_probs=268.3

Q ss_pred             ccccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCC
Q 042887          155 LIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNIS  234 (628)
Q Consensus       155 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~  234 (628)
                      ...++++++|++||+++|.+++. | .+..+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  +++++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~  106 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT  106 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred             ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence            34567889999999999999975 5 699999999999999999975 3  89999999999999999964 4  89999


Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL  314 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  314 (628)
                      +|++|++++|.++ .+|   +..+++|++|++++|++++.   .++++++|++|++++|+..+..  .+..+++|++|++
T Consensus       107 ~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          107 KLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             TCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred             cCCEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence            9999999999998 465   34699999999999999975   3889999999999999554333  5888999999999


Q ss_pred             cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887          315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE  394 (628)
Q Consensus       315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  394 (628)
                      ++|++++++         +..+++|+.|++++|.+++..   +..++ +++.|++++|++++ +|  +..+++|+.|+++
T Consensus       178 s~n~l~~l~---------l~~l~~L~~L~l~~N~l~~~~---l~~l~-~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~  241 (457)
T 3bz5_A          178 SFNKITELD---------VSQNKLLNRLNCDTNNITKLD---LNQNI-QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS  241 (457)
T ss_dssp             CSSCCCCCC---------CTTCTTCCEEECCSSCCSCCC---CTTCT-TCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred             CCCccceec---------cccCCCCCEEECcCCcCCeec---cccCC-CCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence            999998742         566789999999999998763   44444 78899999999887 44  7788889999999


Q ss_pred             cccccccCCcCCCCCC-------CCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceE
Q 042887          395 YNQLTGTIPHAIGELK-------NLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLL  467 (628)
Q Consensus       395 ~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L  467 (628)
                      +|++.+..+..+..+.       +|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|...   .++    +.|
T Consensus       242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L----~~L  312 (457)
T 3bz5_A          242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---AGI----TEL  312 (457)
T ss_dssp             SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---CCC----SCC
T ss_pred             CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC---Ccc----eEe
Confidence            9988876544433332       33444444444433333  3445555555555555444433211   122    222


Q ss_pred             EcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887          468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       468 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  547 (628)
                      +             ++++++|++|++++|++++.   .+..+++|+.|++++|++++        ++.|..|++++|.++
T Consensus       313 ~-------------l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~  368 (457)
T 3bz5_A          313 D-------------LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFE  368 (457)
T ss_dssp             C-------------CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEE
T ss_pred             c-------------hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEE
Confidence            2             33446888899999998874   27888889999999998874        356677788888888


Q ss_pred             ccCchhhhcccCCCeEeccCCcCcccCCCC
Q 042887          548 GQIPKYLENLLFLAYLNLSYNHFEGEVPRK  577 (628)
Q Consensus       548 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~  577 (628)
                      +.     ..+..|+.+++++|+++|.+|..
T Consensus       369 g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          369 AE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             EE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ec-----ceeeecCccccccCcEEEEcChh
Confidence            65     35667888999999999998853

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-37  Score=340.62  Aligned_cols=344  Identities=19%  Similarity=0.214  Sum_probs=222.1

Q ss_pred             CcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEE
Q 042887          160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEII  239 (628)
Q Consensus       160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L  239 (628)
                      .+.+++.|++++|.+....+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            46788999999999988888888999999999999999998888899999999999999999998888888999999999


Q ss_pred             EeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcC
Q 042887          240 SLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL  319 (628)
Q Consensus       240 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l  319 (628)
                      +|++|.++ .+|..++..+++|++|+|++|.+++..|..|+++++|++|++++|.+++..   +..+++|+.|++++|.+
T Consensus       129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            99999998 777777667888888888888888777777888888888888888877542   44556666676666655


Q ss_pred             CCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccc
Q 042887          320 GTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT  399 (628)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  399 (628)
                      +.+.           .                                                 .++|+.|++++|.+.
T Consensus       205 ~~l~-----------~-------------------------------------------------~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          205 STLA-----------I-------------------------------------------------PIAVEELDASHNSIN  224 (597)
T ss_dssp             SEEE-----------C-------------------------------------------------CTTCSEEECCSSCCC
T ss_pred             cccc-----------C-------------------------------------------------CchhheeeccCCccc
Confidence            3211           0                                                 112333333333333


Q ss_pred             ccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccc
Q 042887          400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP  479 (628)
Q Consensus       400 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~  479 (628)
                      ...+..   .++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..+                         
T Consensus       225 ~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------  274 (597)
T 3oja_B          225 VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF-------------------------  274 (597)
T ss_dssp             EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG-------------------------
T ss_pred             cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh-------------------------
Confidence            221111   1356666666666653  3445555555555555555554444444                         


Q ss_pred             hhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccC
Q 042887          480 LEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF  559 (628)
Q Consensus       480 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  559 (628)
                         +.+++|++|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..   +..+++
T Consensus       275 ---~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~  346 (597)
T 3oja_B          275 ---VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHT  346 (597)
T ss_dssp             ---TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCC
T ss_pred             ---cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCC
Confidence               444555555555555543 2333444555555555555555 34445555556666666666655332   344556


Q ss_pred             CCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCcccCCCCCCCCC
Q 042887          560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC  606 (628)
Q Consensus       560 L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~l~l~~c  606 (628)
                      |+.|++++|++++... ...+..+....+.+++..|+....+....|
T Consensus       347 L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c  392 (597)
T 3oja_B          347 LKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDYQLEHGLC  392 (597)
T ss_dssp             CSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred             CCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcchhccCCcc
Confidence            6666666666655422 122334444455566677765444333333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3e-37  Score=324.33  Aligned_cols=386  Identities=21%  Similarity=0.233  Sum_probs=271.6

Q ss_pred             cCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCC-------------CEeecccccCcccCC
Q 042887          161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSL-------------NYLSISENNFSCKLP  227 (628)
Q Consensus       161 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~Ls~N~i~~~~p  227 (628)
                      .+.|++|++++|.+ +.+|++++++++|++|++++|.+.+..|..++.+.+|             ++|++++|.+++ +|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence            46899999999999 7899999999999999999999999999999999875             999999999985 55


Q ss_pred             cCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCC
Q 042887          228 LSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLS  307 (628)
Q Consensus       228 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  307 (628)
                      ..   .++|++|++++|.+++ +|..    +++|++|++++|++++. +..   .++|++|++++|++++ .| .|..++
T Consensus        88 ~~---~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~  153 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSS  153 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             CC---cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence            42   4789999999999994 7752    58999999999999853 221   2799999999999997 45 599999


Q ss_pred             CCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCC
Q 042887          308 NLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVN  387 (628)
Q Consensus       308 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  387 (628)
                      +|++|++++|++++++..          .++|+.|++++|.+++..  .+..+. +++.|++++|.+++ +|..   .++
T Consensus       154 ~L~~L~l~~N~l~~lp~~----------~~~L~~L~L~~n~l~~l~--~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~  216 (454)
T 1jl5_A          154 FLKIIDVDNNSLKKLPDL----------PPSLEFIAAGNNQLEELP--ELQNLP-FLTAIYADNNSLKK-LPDL---PLS  216 (454)
T ss_dssp             TCCEEECCSSCCSCCCCC----------CTTCCEEECCSSCCSSCC--CCTTCT-TCCEEECCSSCCSS-CCCC---CTT
T ss_pred             CCCEEECCCCcCcccCCC----------cccccEEECcCCcCCcCc--cccCCC-CCCEEECCCCcCCc-CCCC---cCc
Confidence            999999999999875421          248999999999998853  466665 89999999999986 3432   258


Q ss_pred             cCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceE
Q 042887          388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLL  467 (628)
Q Consensus       388 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L  467 (628)
                      |+.|++++|.+. .+| .+..+++|++|++++|++++ +|..   +++|+.|++++|++++ +|..+   ++|    +.|
T Consensus       217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~---~~L----~~L  282 (454)
T 1jl5_A          217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELP---QSL----TFL  282 (454)
T ss_dssp             CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCC---TTC----CEE
T ss_pred             ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCccc---CcC----CEE
Confidence            999999999998 566 48999999999999999985 4543   4899999999999985 55433   455    889


Q ss_pred             EcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCC-CCCCeEECcCceeeeecCccccCCCCCCEEECCCCcc
Q 042887          468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSAC-TTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL  546 (628)
Q Consensus       468 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  546 (628)
                      ++++|++++. +. +  .++|++|++++|++++. +    .+ ++|++|++++|++++ +|..   +++|++|++++|++
T Consensus       283 ~ls~N~l~~l-~~-~--~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l  349 (454)
T 1jl5_A          283 DVSENIFSGL-SE-L--PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHL  349 (454)
T ss_dssp             ECCSSCCSEE-SC-C--CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred             ECcCCccCcc-cC-c--CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcc
Confidence            9999999863 21 1  26899999999999853 2    23 589999999999995 5654   58999999999999


Q ss_pred             cccCchhhhcccCCCeEeccCCcCcc--cCCCC-CCC-------------CCCCcccccCCCCCc-----ccCCCCCCCC
Q 042887          547 SGQIPKYLENLLFLAYLNLSYNHFEG--EVPRK-GVF-------------GNRTGIHLIGNERLC-----GGLEELHLPS  605 (628)
Q Consensus       547 ~~~~~~~~~~l~~L~~L~ls~N~l~~--~~p~~-~~~-------------~~l~~~~~~~n~~~c-----~~~~~l~l~~  605 (628)
                      ++ +|.   .+++|++|++++|++++  .+|.. +.+             ++++.+++++|+...     ..+..|.+..
T Consensus       350 ~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~  425 (454)
T 1jl5_A          350 AE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNS  425 (454)
T ss_dssp             SC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------------
T ss_pred             cc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhheeCcC
Confidence            95 555   47899999999999999  55532 222             678888888887553     2344556666


Q ss_pred             CCCCC
Q 042887          606 CHFGR  610 (628)
Q Consensus       606 c~~~~  610 (628)
                      |.+..
T Consensus       426 ~~~~~  430 (454)
T 1jl5_A          426 ERVVD  430 (454)
T ss_dssp             -----
T ss_pred             cccCC
Confidence            66533

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.8e-37  Score=323.05  Aligned_cols=353  Identities=18%  Similarity=0.193  Sum_probs=271.5

Q ss_pred             cccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChh
Q 042887          174 LIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLN  253 (628)
Q Consensus       174 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  253 (628)
                      ..+..+..++.+++|++|++++|.+++. | .|+.+++|++|++++|.+++. |  ++.+++|++|++++|.++ .+|  
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~--  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD--  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--
T ss_pred             cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--
Confidence            3445556788999999999999999965 5 799999999999999999964 4  899999999999999998 455  


Q ss_pred             hhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccc
Q 042887          254 IGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL  333 (628)
Q Consensus       254 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l  333 (628)
                       +..+++|++|++++|++++. |  ++.+++|++|++++|+++++   .+..+++|++|++++|...+.      .  .+
T Consensus       102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~------~--~~  166 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITK------L--DV  166 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCC------C--CC
T ss_pred             -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccc------c--cc
Confidence             34699999999999999974 3  89999999999999999975   388899999999999953321      1  35


Q ss_pred             cCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCC
Q 042887          334 TNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQ  413 (628)
Q Consensus       334 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  413 (628)
                      ..+++|+.|++++|++++..   +..++ +++.|++++|.+++.   .+..+++|+.|++++|++++ +|  +..+++|+
T Consensus       167 ~~l~~L~~L~ls~n~l~~l~---l~~l~-~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~  236 (457)
T 3bz5_A          167 TPQTQLTTLDCSFNKITELD---VSQNK-LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT  236 (457)
T ss_dssp             TTCTTCCEEECCSSCCCCCC---CTTCT-TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred             ccCCcCCEEECCCCccceec---cccCC-CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence            67789999999999988864   44444 788888888888865   37788888888888888886 44  77888888


Q ss_pred             eEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeC
Q 042887          414 GLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL  493 (628)
Q Consensus       414 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  493 (628)
                      .|++++|++++..   +..+++|+.|++++|++                  +.|++++|.+.+.+|  ++.+++|+.|++
T Consensus       237 ~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L------------------~~L~l~~n~~~~~~~--~~~l~~L~~L~L  293 (457)
T 3bz5_A          237 YFDCSVNPLTELD---VSTLSKLTTLHCIQTDL------------------LEIDLTHNTQLIYFQ--AEGCRKIKELDV  293 (457)
T ss_dssp             EEECCSSCCSCCC---CTTCTTCCEEECTTCCC------------------SCCCCTTCTTCCEEE--CTTCTTCCCCCC
T ss_pred             EEEeeCCcCCCcC---HHHCCCCCEEeccCCCC------------------CEEECCCCccCCccc--ccccccCCEEEC
Confidence            8888888888654   34566677777666543                  445677776665555  456677777777


Q ss_pred             cCCcCcccCCc--------cccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEec
Q 042887          494 SENHFSNEIPV--------TLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNL  565 (628)
Q Consensus       494 s~N~l~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  565 (628)
                      ++|...+.+|.        .+..+++|++|++++|++++. +  +..+++|+.|++++|++++        ++.|..|++
T Consensus       294 s~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l  362 (457)
T 3bz5_A          294 THNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPA  362 (457)
T ss_dssp             TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSG
T ss_pred             CCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccc
Confidence            77765544432        244557889999999999863 3  7888999999999999885        245667788


Q ss_pred             cCCcCcccCCCCCCCCCCCcccccCCCCCcccC
Q 042887          566 SYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGL  598 (628)
Q Consensus       566 s~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~  598 (628)
                      ++|.++|.    +.+..+..++++.|. +.|.+
T Consensus       363 ~~n~l~g~----~~~~~l~~l~l~~N~-l~g~i  390 (457)
T 3bz5_A          363 LNNNFEAE----GQTITMPKETLTNNS-LTIAV  390 (457)
T ss_dssp             GGTSEEEE----EEEEECCCBCCBTTB-EEEEC
T ss_pred             cCCcEEec----ceeeecCccccccCc-EEEEc
Confidence            99988886    223445566666663 34443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-36  Score=314.56  Aligned_cols=312  Identities=23%  Similarity=0.239  Sum_probs=228.7

Q ss_pred             CcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEE
Q 042887          160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEII  239 (628)
Q Consensus       160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L  239 (628)
                      .+.+++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46789999999999998777788999999999999999998888899999999999999999998888889999999999


Q ss_pred             EeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcC
Q 042887          240 SLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL  319 (628)
Q Consensus       240 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l  319 (628)
                      ++++|.++ .+|..++..+++|++|++++|++++..+..|+++++|++|++++|++++.   .+..+++|++|++++|.+
T Consensus       123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            99999998 78888777799999999999999988888899999999999999988754   356677888888888876


Q ss_pred             CCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccc
Q 042887          320 GTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT  399 (628)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  399 (628)
                      +.+.           ..++|+.|++++|.                         +... |                    
T Consensus       199 ~~~~-----------~~~~L~~L~l~~n~-------------------------l~~~-~--------------------  221 (390)
T 3o6n_A          199 STLA-----------IPIAVEELDASHNS-------------------------INVV-R--------------------  221 (390)
T ss_dssp             SEEE-----------CCSSCSEEECCSSC-------------------------CCEE-E--------------------
T ss_pred             cccC-----------CCCcceEEECCCCe-------------------------eeec-c--------------------
Confidence            5421           11233344443333                         3221 1                    


Q ss_pred             ccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccc
Q 042887          400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP  479 (628)
Q Consensus       400 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~  479 (628)
                          .  ...++|+.|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|    +.|++++|++++ ++
T Consensus       222 ----~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~-~~  288 (390)
T 3o6n_A          222 ----G--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----ERLYISNNRLVA-LN  288 (390)
T ss_dssp             ----C--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC----CEEECCSSCCCE-EE
T ss_pred             ----c--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC----CEEECCCCcCcc-cC
Confidence                0  0123455555555555432  345555555555555555555555555555555    556666666653 34


Q ss_pred             hhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccccc
Q 042887          480 LEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQ  549 (628)
Q Consensus       480 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  549 (628)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. +  +..+++|+.|++++|+++..
T Consensus       289 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            44556677777777777777 4555667777888888888887743 3  56778888899999888754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.8e-37  Score=320.08  Aligned_cols=335  Identities=19%  Similarity=0.200  Sum_probs=262.8

Q ss_pred             CCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcE
Q 042887          184 NFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNF  263 (628)
Q Consensus       184 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  263 (628)
                      .+++++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            4689999999999998776677899999999999999999877889999999999999999998 555555556899999


Q ss_pred             EecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceee
Q 042887          264 LSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLY  343 (628)
Q Consensus       264 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~  343 (628)
                      |++++|+++...+..|+++++|++|++++|++++..+..|..+++|++|++++|+++..+         +.         
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~---------  183 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LS---------  183 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------GG---------
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------cc---------
Confidence            999999998666666788999999999999988887777888888888888888775421         11         


Q ss_pred             cccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccc
Q 042887          344 LNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLR  423 (628)
Q Consensus       344 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  423 (628)
                                                              .+++|+.+++++|.+.+.     ...++|+.|++++|.+.
T Consensus       184 ----------------------------------------~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          184 ----------------------------------------LIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSIN  218 (390)
T ss_dssp             ----------------------------------------GCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCC
T ss_pred             ----------------------------------------cccccceeeccccccccc-----CCCCcceEEECCCCeee
Confidence                                                    223334444444443321     12346888999999888


Q ss_pred             cccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCC
Q 042887          424 GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIP  503 (628)
Q Consensus       424 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  503 (628)
                      .. |..  ..++|+.|++++|++++.  ..+..+++|    +.|++++|.+++..|..+..+++|++|++++|++++ +|
T Consensus       219 ~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~  288 (390)
T 3o6n_A          219 VV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGL----VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LN  288 (390)
T ss_dssp             EE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTC----SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EE
T ss_pred             ec-ccc--ccccccEEECCCCCCccc--HHHcCCCCc----cEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cC
Confidence            54 332  247899999999999853  567777777    889999999998888899999999999999999985 45


Q ss_pred             ccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCC
Q 042887          504 VTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNR  583 (628)
Q Consensus       504 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l  583 (628)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++...   +..+++|+.|++++|++.+... ...+..+
T Consensus       289 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~  363 (390)
T 3o6n_A          289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNV  363 (390)
T ss_dssp             CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTC
T ss_pred             cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH-HHHHHHH
Confidence            66678899999999999998 56777888899999999999998553   6678889999999999987533 2334555


Q ss_pred             CcccccCCCCCccc
Q 042887          584 TGIHLIGNERLCGG  597 (628)
Q Consensus       584 ~~~~~~~n~~~c~~  597 (628)
                      ....+.+++..|..
T Consensus       364 ~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          364 ARPAVDDADQHCKI  377 (390)
T ss_dssp             CTTTBCCCCSCCCT
T ss_pred             HhhcccccCceecc
Confidence            55566677777753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.4e-35  Score=299.56  Aligned_cols=306  Identities=21%  Similarity=0.312  Sum_probs=156.8

Q ss_pred             CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      ..+++|++|++++|.+... + .+..+++|++|++++|.+++..+  |..+++|++|++++|.++. + ..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence            3455666666666666532 2 25566666666666666654332  6666666666666666553 2 23555555555


Q ss_pred             EEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc
Q 042887          239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN  318 (628)
Q Consensus       239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~  318 (628)
                      |++++|.++ .++.  +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       115 L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          115 LYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EECcCCccc-Cchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            555555554 2332  223444444444444322111 123333444444444333332211  2223333333333222


Q ss_pred             CCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccc
Q 042887          319 LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL  398 (628)
Q Consensus       319 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  398 (628)
                      +.                                                       +..  .+..+++|+.+++++|.+
T Consensus       189 l~-------------------------------------------------------~~~--~~~~l~~L~~L~l~~n~l  211 (347)
T 4fmz_A          189 IE-------------------------------------------------------DIS--PLASLTSLHYFTAYVNQI  211 (347)
T ss_dssp             CC-------------------------------------------------------CCG--GGGGCTTCCEEECCSSCC
T ss_pred             cc-------------------------------------------------------ccc--cccCCCccceeecccCCC
Confidence            21                                                       111  134445555555555555


Q ss_pred             cccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCcccc
Q 042887          399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSI  478 (628)
Q Consensus       399 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~  478 (628)
                      .+..+  +..+++|++|++++|.+++..+  +..+++|+                            .|++++|.+++. 
T Consensus       212 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~----------------------------~L~l~~n~l~~~-  258 (347)
T 4fmz_A          212 TDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT----------------------------WLEIGTNQISDI-  258 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC----------------------------EEECCSSCCCCC-
T ss_pred             CCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC----------------------------EEECCCCccCCC-
Confidence            43322  4445555555555555543222  44444444                            445555554432 


Q ss_pred             chhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhccc
Q 042887          479 PLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL  558 (628)
Q Consensus       479 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  558 (628)
                       ..+..+++|++|++++|++++.  ..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|  +..++
T Consensus       259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~  333 (347)
T 4fmz_A          259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS  333 (347)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred             -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence             2455566666666666666643  345666677777777777766666666677777777777777765544  66677


Q ss_pred             CCCeEeccCCcCc
Q 042887          559 FLAYLNLSYNHFE  571 (628)
Q Consensus       559 ~L~~L~ls~N~l~  571 (628)
                      +|++|++++|+|+
T Consensus       334 ~L~~L~l~~N~i~  346 (347)
T 4fmz_A          334 KMDSADFANQVIK  346 (347)
T ss_dssp             TCSEESSSCC---
T ss_pred             ccceeehhhhccc
Confidence            7777777777664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.5e-35  Score=297.99  Aligned_cols=284  Identities=24%  Similarity=0.332  Sum_probs=213.3

Q ss_pred             cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCC
Q 042887          158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE  237 (628)
Q Consensus       158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~  237 (628)
                      +..+++|++|++++|.+++..+  +..+++|++|++++|.++..  .+|..+++|++|++++|.+++. +. +..+++|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~  135 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMY  135 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCC
T ss_pred             hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCcee
Confidence            5678899999999999986554  99999999999999999853  4699999999999999999854 43 89999999


Q ss_pred             EEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887          238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN  317 (628)
Q Consensus       238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n  317 (628)
                      +|++++|.....++.  +..+++|++|++++|.+....+  +..+++|++|++++|.+++..+  +..+++|+.|++++|
T Consensus       136 ~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  209 (347)
T 4fmz_A          136 SLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN  209 (347)
T ss_dssp             EEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             EEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccC
Confidence            999999976645544  3469999999999999986544  8899999999999999986554  777888888888877


Q ss_pred             cCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccc
Q 042887          318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ  397 (628)
Q Consensus       318 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  397 (628)
                      .+...                                                         ..+..+++|+.|++++|.
T Consensus       210 ~l~~~---------------------------------------------------------~~~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          210 QITDI---------------------------------------------------------TPVANMTRLNSLKIGNNK  232 (347)
T ss_dssp             CCCCC---------------------------------------------------------GGGGGCTTCCEEECCSSC
T ss_pred             CCCCC---------------------------------------------------------chhhcCCcCCEEEccCCc
Confidence            66431                                                         014567788999999999


Q ss_pred             ccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc
Q 042887          398 LTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS  477 (628)
Q Consensus       398 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~  477 (628)
                      +.+..+  +..+++|++|++++|.+++.  +.+..+++|++|++++|++++.  ..+..+++|    +.|++++|++++.
T Consensus       233 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L----~~L~L~~n~l~~~  302 (347)
T 4fmz_A          233 ITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL----NSLFLNNNQLGNE  302 (347)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC----SEEECCSSCCCGG
T ss_pred             cCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC----CEEECcCCcCCCc
Confidence            986544  88999999999999999853  4577788888888888877643  234444444    5555555555555


Q ss_pred             cchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887          478 IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF  522 (628)
Q Consensus       478 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  522 (628)
                      .+..+..+++|++|++++|++++..|  +..+++|++|++++|.|
T Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             ChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            55555555555555555555554333  44455555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.9e-35  Score=294.61  Aligned_cols=259  Identities=30%  Similarity=0.481  Sum_probs=233.4

Q ss_pred             CCceeecccCCccc--ccchHHHhccccccEEEccC-CcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCe
Q 042887          338 QMEMLYLNTNKFGG--VFLRSIANLSAKITVIGMGD-NQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQG  414 (628)
Q Consensus       338 ~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  414 (628)
                      +++.|++++|.+++  ..+..+..+. +|+.|++++ |.+.+.+|..+.++++|++|++++|++.+..|..|..+++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            56666666666666  5566666665 788888884 8888888999999999999999999999899999999999999


Q ss_pred             EecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCc-chhcccceEEcCCCcCccccchhhhccCCCCEeeC
Q 042887          415 LALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQ-NLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL  493 (628)
Q Consensus       415 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  493 (628)
                      |++++|.+++..|..+..+++|++|++++|++++..|..+..++ +|    +.|++++|++++..|..+..++ |++|++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L----~~L~L~~N~l~~~~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF----TSMTISRNRLTGKIPPTFANLN-LAFVDL  204 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC----CEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC----cEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence            99999999999999999999999999999999999999999887 77    8999999999999999999987 999999


Q ss_pred             cCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCccc
Q 042887          494 SENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGE  573 (628)
Q Consensus       494 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  573 (628)
                      ++|.+++..|..+..+++|+.|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.
T Consensus       205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            99999999999999999999999999999976665 88899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccccCCCCCcccCCCCCCCCCC
Q 042887          574 VPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCH  607 (628)
Q Consensus       574 ~p~~~~~~~l~~~~~~~n~~~c~~~~~l~l~~c~  607 (628)
                      +|..+.+++++.+++.+|+++|+.    .++.|.
T Consensus       284 ip~~~~l~~L~~l~l~~N~~lc~~----p~~~C~  313 (313)
T 1ogq_A          284 IPQGGNLQRFDVSAYANNKCLCGS----PLPACT  313 (313)
T ss_dssp             CCCSTTGGGSCGGGTCSSSEEEST----TSSCCC
T ss_pred             CCCCccccccChHHhcCCCCccCC----CCCCCC
Confidence            999888999999999999999985    344563

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=7.8e-38  Score=332.15  Aligned_cols=380  Identities=16%  Similarity=0.155  Sum_probs=228.2

Q ss_pred             CcccEEEccCCccccccchh-hhCCCCCCEEecccCcCccc----ccccccCCCCCCEeecccccCcccCCcCcc-CCC-
Q 042887          162 LKLEMIDVGDNQLIGKFPDF-IANFSALEAIDISANMLGGR----IPDSLCQLRSLNYLSISENNFSCKLPLSIW-NIS-  234 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~-~l~-  234 (628)
                      ++|++||+++|+++...... +..+++|++|++++|.++..    ++..+..+++|++|+|++|.+++..+..+. .++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46788888888887654433 77788888888888887743    355667777788888888777654333322 233 


Q ss_pred             ---CCCEEEeecccCcc----cCChhhhhCCCCCcEEecccCccccccccccc-----CCCCCCEEEcccccceeecccc
Q 042887          235 ---SLEIISLHSNRFEG----SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS-----NASNLQVLDVYKNHFSGQVKID  302 (628)
Q Consensus       235 ---~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~~~~~~  302 (628)
                         +|++|++++|.+++    .++..+ ..+++|++|++++|.+++..+..+.     ..++|++|++++|++++.... 
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-  160 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-  160 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH-
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH-
Confidence               56666666666652    122222 2355555555555555433222221     133455555555554432211 


Q ss_pred             cccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHh----ccccccEEEccCCcceee-
Q 042887          303 FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIAN----LSAKITVIGMGDNQISGT-  377 (628)
Q Consensus       303 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~----~~~~L~~L~l~~n~l~~~-  377 (628)
                                               .....+..+++|+.|++++|.++......+..    ..++++.|++++|.+++. 
T Consensus       161 -------------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  215 (461)
T 1z7x_W          161 -------------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN  215 (461)
T ss_dssp             -------------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred             -------------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence                                     11222333444455555555444433333322    112556666666655542 


Q ss_pred             ---CchhhhccCCcCeeeeccccccccC-----CcCCCCCCCCCeEecccCccccc----cCccccCCCCCCeEecCCcc
Q 042887          378 ---IPSEIKNLVNINAFGVEYNQLTGTI-----PHAIGELKNLQGLALVRNSLRGT----IPDTLGNLTLLNRLFLGFNN  445 (628)
Q Consensus       378 ---~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~  445 (628)
                         ++..+..+++|+.|++++|.+.+..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.
T Consensus       216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence               3455667778888888888776432     22334577888888888888753    46666778888888888888


Q ss_pred             cccccCCcccCC-----cchhcccceEEcCCCcCccc----cchhhhccCCCCEeeCcCCcCcccCCccccC-----CCC
Q 042887          446 LQGNVPSSLGNC-----QNLMTLSRLLDLSGNLLGGS----IPLEVGNLRNLAEFDLSENHFSNEIPVTLSA-----CTT  511 (628)
Q Consensus       446 l~~~~~~~~~~l-----~~L~~l~~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~  511 (628)
                      +++..+..+...     ++|    +.|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++
T Consensus       296 i~~~~~~~l~~~l~~~~~~L----~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  371 (461)
T 1z7x_W          296 LGDEGARLLCETLLEPGCQL----ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  371 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCC----CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CchHHHHHHHHHhccCCccc----eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence            765544433322     345    7778888887754    3455666788888888888877654444432     567


Q ss_pred             CCeEECcCceeee----ecCccccCCCCCCEEECCCCcccccCchhhh-----cccCCCeEeccCCcCcc
Q 042887          512 LEYLHLQGNSFSG----SLPLSLKTLKSIKELDLSRNNLSGQIPKYLE-----NLLFLAYLNLSYNHFEG  572 (628)
Q Consensus       512 L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~ls~N~l~~  572 (628)
                      |++|++++|.+++    .+|..+..+++|++|++++|++++.....+.     ....|+.|++.++.+..
T Consensus       372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            8888888888775    5667777778888888888887754333332     12357777777766654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-34  Score=315.89  Aligned_cols=311  Identities=19%  Similarity=0.201  Sum_probs=218.2

Q ss_pred             CCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEE
Q 042887          234 SSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLF  313 (628)
Q Consensus       234 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  313 (628)
                      .+++.|++++|.+. .+|..++..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|+.+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            44555555555554 44554444455555555555555555555555666666666666666555555555566666666


Q ss_pred             ccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeee
Q 042887          314 LSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGV  393 (628)
Q Consensus       314 L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  393 (628)
                      +++|.++.++..      .+.++++|+.|++++|                         .+.+..|..+..+++|+.|++
T Consensus       130 L~~n~l~~l~~~------~~~~l~~L~~L~Ls~N-------------------------~l~~~~~~~~~~l~~L~~L~L  178 (597)
T 3oja_B          130 LERNDLSSLPRG------IFHNTPKLTTLSMSNN-------------------------NLERIEDDTFQATTSLQNLQL  178 (597)
T ss_dssp             CCSSCCCCCCTT------TTTTCTTCCEEECCSS-------------------------CCCBCCTTTTTTCTTCCEEEC
T ss_pred             eeCCCCCCCCHH------HhccCCCCCEEEeeCC-------------------------cCCCCChhhhhcCCcCcEEEC
Confidence            666655543322      1222333333333333                         333344455666667777777


Q ss_pred             ccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCc
Q 042887          394 EYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL  473 (628)
Q Consensus       394 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~  473 (628)
                      ++|.+.+..   +..+++|+.|++++|.+++     +...++|+.|++++|.++...+...   ++|    +.|++++|.
T Consensus       179 ~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~---~~L----~~L~L~~n~  243 (597)
T 3oja_B          179 SSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVN---VEL----TILKLQHNN  243 (597)
T ss_dssp             TTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSCC---SCC----CEEECCSSC
T ss_pred             cCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccccC---CCC----CEEECCCCC
Confidence            777766432   4456777888888887764     2344678888888888875444332   345    788999999


Q ss_pred             CccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchh
Q 042887          474 LGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY  553 (628)
Q Consensus       474 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  553 (628)
                      +++  +..+..+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..
T Consensus       244 l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~  319 (597)
T 3oja_B          244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN  319 (597)
T ss_dssp             CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred             CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcc
Confidence            985  4678999999999999999999999999999999999999999995 5777788999999999999999 57788


Q ss_pred             hhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCccc
Q 042887          554 LENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGG  597 (628)
Q Consensus       554 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  597 (628)
                      +..+++|+.|++++|++++..  ...+++++.+++++|++.|..
T Consensus       320 ~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          320 QPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             HHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred             cccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence            899999999999999998753  456789999999999999853

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.8e-33  Score=283.23  Aligned_cols=288  Identities=22%  Similarity=0.259  Sum_probs=215.3

Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL  314 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  314 (628)
                      +++.++++++.++ .+|..+   .++|+.|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4667777777766 666554   356777777777777666777788888888888888887777777888888888888


Q ss_pred             cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887          315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE  394 (628)
Q Consensus       315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  394 (628)
                      ++|+++.++...+         +                         +++.|++++|.+.+..+..+..+++|+.|+++
T Consensus       110 ~~n~l~~l~~~~~---------~-------------------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  155 (332)
T 2ft3_A          110 SKNHLVEIPPNLP---------S-------------------------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG  155 (332)
T ss_dssp             CSSCCCSCCSSCC---------T-------------------------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred             CCCcCCccCcccc---------c-------------------------cCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence            8887765432210         2                         34444445555554455567777888888888


Q ss_pred             cccccc--cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCC
Q 042887          395 YNQLTG--TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN  472 (628)
Q Consensus       395 ~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N  472 (628)
                      +|.+..  ..+..+..+ +|++|++++|++++ +|..+.  ++|++|++++|++++..+..+..+++|    +.|++++|
T Consensus       156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L----~~L~L~~N  227 (332)
T 2ft3_A          156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKL----YRLGLGHN  227 (332)
T ss_dssp             SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTC----SCCBCCSS
T ss_pred             CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCC----CEEECCCC
Confidence            887753  566777777 88888888888885 454443  688888888888887777888888887    78888999


Q ss_pred             cCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccC------CCCCCEEECCCCcc
Q 042887          473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKT------LKSIKELDLSRNNL  546 (628)
Q Consensus       473 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l  546 (628)
                      ++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      .++|+.|++++|++
T Consensus       228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence            888777778888899999999999988 67777888899999999999998766666654      36788999999998


Q ss_pred             c--ccCchhhhcccCCCeEeccCCc
Q 042887          547 S--GQIPKYLENLLFLAYLNLSYNH  569 (628)
Q Consensus       547 ~--~~~~~~~~~l~~L~~L~ls~N~  569 (628)
                      .  ...|..|..+++|+.+++++|+
T Consensus       307 ~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          307 PYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccCcccccccchhhhhhccccc
Confidence            7  6778889999999999998885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=3.4e-33  Score=282.41  Aligned_cols=296  Identities=18%  Similarity=0.235  Sum_probs=216.5

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      .+++.++++++.++. +|..+.  +++++|++++|.+++..+..|+.+++|++|+|++|.+++..|..|.++++|++|++
T Consensus        31 c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            368899999999984 555443  68999999999999888889999999999999999999888999999999999999


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccccccee--ecccccccCCCCCEEEccCCcC
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG--QVKIDFNRLSNLSRLFLSKNNL  319 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~n~l  319 (628)
                      ++|.++ .+|..++   ++|++|++++|++++..+..|.++++|++|++++|.++.  ..+..|..+++|++|++++|.+
T Consensus       108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            999998 7887664   789999999999998888889999999999999999864  5667788889999999998888


Q ss_pred             CCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccc
Q 042887          320 GTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT  399 (628)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  399 (628)
                      +.++...         .+                         +++.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       184 ~~l~~~~---------~~-------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          184 TTIPQGL---------PP-------------------------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             CSCCSSC---------CT-------------------------TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             ccCCccc---------cc-------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence            6543210         01                         4555555555555555666667777777777777776


Q ss_pred             ccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccc
Q 042887          400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP  479 (628)
Q Consensus       400 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~  479 (628)
                      +..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.....                    
T Consensus       230 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~--------------------  288 (330)
T 1xku_A          230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY--------------------  288 (330)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC--------------------
T ss_pred             eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc--------------------
Confidence            666666667777777777777776 55666666777777777777776554444432210                    


Q ss_pred             hhhhccCCCCEeeCcCCcCcc--cCCccccCCCCCCeEECcCce
Q 042887          480 LEVGNLRNLAEFDLSENHFSN--EIPVTLSACTTLEYLHLQGNS  521 (628)
Q Consensus       480 ~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~  521 (628)
                        ....+.|+.|++++|.+..  ..|..|..+.+++.++|++|+
T Consensus       289 --~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          289 --NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             --CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             --ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence              0112455666666666542  345566666666666666664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=4.5e-33  Score=281.56  Aligned_cols=289  Identities=22%  Similarity=0.251  Sum_probs=178.6

Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL  314 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  314 (628)
                      +++.++++++.++ .+|..+   .+++++|++++|++++..+..|+++++|++|++++|++++..+..|..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            3455555555554 444433   245556666666666555555666666666666666666665666666666666666


Q ss_pred             cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887          315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE  394 (628)
Q Consensus       315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  394 (628)
                      ++|+++.++...         .++|+.|++++|.                         +.+..+..+.++++|+.|+++
T Consensus       108 s~n~l~~l~~~~---------~~~L~~L~l~~n~-------------------------l~~~~~~~~~~l~~L~~L~l~  153 (330)
T 1xku_A          108 SKNQLKELPEKM---------PKTLQELRVHENE-------------------------ITKVRKSVFNGLNQMIVVELG  153 (330)
T ss_dssp             CSSCCSBCCSSC---------CTTCCEEECCSSC-------------------------CCBBCHHHHTTCTTCCEEECC
T ss_pred             CCCcCCccChhh---------cccccEEECCCCc-------------------------ccccCHhHhcCCccccEEECC
Confidence            666665433211         0234444444443                         333334445555666666666


Q ss_pred             cccccc--cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCC
Q 042887          395 YNQLTG--TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN  472 (628)
Q Consensus       395 ~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N  472 (628)
                      +|.+..  ..+..+..+++|++|++++|.+++ +|..+.  ++|++|++++|++++..|..+..+++|    +.|++++|
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~Ls~n  226 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL----AKLGLSFN  226 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC----CEEECCSS
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC----CEEECCCC
Confidence            665542  445556666666677776666663 333332  567777777777776666666666666    66777777


Q ss_pred             cCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccC------CCCCCEEECCCCcc
Q 042887          473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKT------LKSIKELDLSRNNL  546 (628)
Q Consensus       473 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l  546 (628)
                      ++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.|+.|++++|++
T Consensus       227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            777666666777777777777777777 56666777777777777777777655555543      36778888888887


Q ss_pred             cc--cCchhhhcccCCCeEeccCCc
Q 042887          547 SG--QIPKYLENLLFLAYLNLSYNH  569 (628)
Q Consensus       547 ~~--~~~~~~~~l~~L~~L~ls~N~  569 (628)
                      ..  ..|..|..+..++.+++++|+
T Consensus       306 ~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          306 QYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccCccccccccceeEEEecccC
Confidence            63  556778888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.9e-33  Score=284.53  Aligned_cols=294  Identities=18%  Similarity=0.197  Sum_probs=191.7

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH  242 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~  242 (628)
                      +++.++++++.++ .+|..+  .++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            6889999999987 456544  3689999999999998888889999999999999999998888899999999999999


Q ss_pred             cccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccccccee--ecccccccCCCCCEEEccCCcCC
Q 042887          243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG--QVKIDFNRLSNLSRLFLSKNNLG  320 (628)
Q Consensus       243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~n~l~  320 (628)
                      +|.++ .+|..++   ++|++|++++|+++...+..|.++++|++|++++|.++.  ..+..|..+ +|++|++++|+++
T Consensus       111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            99998 7777654   788888888888887766778888888888888888853  455566665 6777777777665


Q ss_pred             CcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccc
Q 042887          321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG  400 (628)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  400 (628)
                      .++...         .+                         +++.|++++|.+.+..+..+..+++|+.|++++|++.+
T Consensus       186 ~l~~~~---------~~-------------------------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          186 GIPKDL---------PE-------------------------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             SCCSSS---------CS-------------------------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             ccCccc---------cC-------------------------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence            432210         01                         23333333333333334445555555555555555554


Q ss_pred             cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccch
Q 042887          401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL  480 (628)
Q Consensus       401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~  480 (628)
                      ..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.....                     
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---------------------  289 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF---------------------  289 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC---------------------
T ss_pred             CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc---------------------
Confidence            44445555555555555555555 34444555555555555555555443333332110                     


Q ss_pred             hhhccCCCCEeeCcCCcCc--ccCCccccCCCCCCeEECcCce
Q 042887          481 EVGNLRNLAEFDLSENHFS--NEIPVTLSACTTLEYLHLQGNS  521 (628)
Q Consensus       481 ~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~  521 (628)
                       -...+.|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       290 -~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          290 -GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             -ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence             001245666777777665  4555666667777777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.9e-36  Score=321.48  Aligned_cols=372  Identities=17%  Similarity=0.157  Sum_probs=250.1

Q ss_pred             cCCcCcccEEEccCCcccc----ccchhhhCCCCCCEEecccCcCcccccccc-cCCC----CCCEeecccccCcc----
Q 042887          158 RLNLLKLEMIDVGDNQLIG----KFPDFIANFSALEAIDISANMLGGRIPDSL-CQLR----SLNYLSISENNFSC----  224 (628)
Q Consensus       158 ~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~----~L~~L~Ls~N~i~~----  224 (628)
                      +..+++|++|++++|+++.    .+++.+..+++|++|++++|.+....+..+ ..++    +|++|+|++|.++.    
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            3467789999999999985    356778889999999999999986555444 3455    79999999999984    


Q ss_pred             cCCcCccCCCCCCEEEeecccCcccCChhhhh----CCCCCcEEecccCcccccc----cccccCCCCCCEEEcccccce
Q 042887          225 KLPLSIWNISSLEIISLHSNRFEGSLPLNIGF----NIPNVNFLSVGQNNFTGSL----PHSFSNASNLQVLDVYKNHFS  296 (628)
Q Consensus       225 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~  296 (628)
                      .++..+..+++|++|++++|.+++..+..+..    ..++|++|++++|++++..    +..+..+++|++|++++|.++
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            45888999999999999999997544443332    3568999999999999743    566778899999999999997


Q ss_pred             eeccccccc-----CCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccC
Q 042887          297 GQVKIDFNR-----LSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGD  371 (628)
Q Consensus       297 ~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  371 (628)
                      ......+..     .++|++|++++|.++.....  ..+..+..+++|+.|++++|.++......+..            
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~------------  249 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--DLCGIVASKASLRELALGSNKLGDVGMAELCP------------  249 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH--HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH------------
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH--HHHHHHHhCCCccEEeccCCcCChHHHHHHHH------------
Confidence            665555442     56999999999988753211  13445666788888888888876654443332            


Q ss_pred             CcceeeCchhhhccCCcCeeeecccccccc----CCcCCCCCCCCCeEecccCccccccCccccC-----CCCCCeEecC
Q 042887          372 NQISGTIPSEIKNLVNINAFGVEYNQLTGT----IPHAIGELKNLQGLALVRNSLRGTIPDTLGN-----LTLLNRLFLG  442 (628)
Q Consensus       372 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~  442 (628)
                              ..+..+++|+.|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|+++
T Consensus       250 --------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          250 --------GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             --------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             --------HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence                    1112344455555555554432    2333444555555666655555433322222     2466666666


Q ss_pred             Ccccccc----cCCcccCCcchhcccceEEcCCCcCccccchhhhc-----cCCCCEeeCcCCcCcc----cCCccccCC
Q 042887          443 FNNLQGN----VPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGN-----LRNLAEFDLSENHFSN----EIPVTLSAC  509 (628)
Q Consensus       443 ~N~l~~~----~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l  509 (628)
                      +|.+++.    .+..+..+++|    +.|++++|.+++..+..+..     .++|++|++++|++++    .+|..+..+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L----~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  397 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFL----LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN  397 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSC----CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             CCCCchHHHHHHHHHHhhCCCc----cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence            6666543    23334444555    66677777666544444432     5678888888888875    566677777


Q ss_pred             CCCCeEECcCceeeeecCccc-----cCCCCCCEEECCCCcccccCchhhh
Q 042887          510 TTLEYLHLQGNSFSGSLPLSL-----KTLKSIKELDLSRNNLSGQIPKYLE  555 (628)
Q Consensus       510 ~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~  555 (628)
                      ++|++|++++|++++.....+     ....+|+.|++.++.+....++.+.
T Consensus       398 ~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~  448 (461)
T 1z7x_W          398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ  448 (461)
T ss_dssp             CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHH
Confidence            888888888888775322111     1245688888888877655554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.1e-33  Score=283.19  Aligned_cols=185  Identities=30%  Similarity=0.532  Sum_probs=131.7

Q ss_pred             hhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCC-CCCeEecCCcccccccCCcccCCcc
Q 042887          381 EIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLT-LLNRLFLGFNNLQGNVPSSLGNCQN  459 (628)
Q Consensus       381 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~  459 (628)
                      .+.++++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..++ +|++|++++|++++..|..+..++ 
T Consensus       120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-  198 (313)
T 1ogq_A          120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-  198 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred             HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence            344444444444444444444555555555666666666666655666666665 666666666666666666666654 


Q ss_pred             hhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEE
Q 042887          460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKEL  539 (628)
Q Consensus       460 L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  539 (628)
                      |    +.|++++|++++..|..+..+++|++|++++|++++..|. +..+++|++|++++|++++.+|..+..+++|++|
T Consensus       199 L----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  273 (313)
T 1ogq_A          199 L----AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             C----SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             c----cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence            4    6777777777777777777888888888888888765554 6778888888888888888888888888888888


Q ss_pred             ECCCCcccccCchhhhcccCCCeEeccCCc-Ccc
Q 042887          540 DLSRNNLSGQIPKYLENLLFLAYLNLSYNH-FEG  572 (628)
Q Consensus       540 ~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~-l~~  572 (628)
                      ++++|++++.+|+. ..+++|+.+++++|+ ++|
T Consensus       274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             ECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            88888888888876 778888899999888 555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=5.8e-31  Score=268.64  Aligned_cols=278  Identities=21%  Similarity=0.196  Sum_probs=166.9

Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL  314 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  314 (628)
                      .....++++|.++ .+|..+   .++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus        32 ~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           32 RNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             TTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            3344555666665 555544   245666666666666555556666666666666666666666666666666666666


Q ss_pred             cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887          315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE  394 (628)
Q Consensus       315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  394 (628)
                      ++|+++.++                                                       +..+.++++|++|+++
T Consensus       108 s~n~l~~~~-------------------------------------------------------~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A          108 SYNYLSNLS-------------------------------------------------------SSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             CSSCCSSCC-------------------------------------------------------HHHHTTCTTCSEEECT
T ss_pred             CCCcCCcCC-------------------------------------------------------HhHhCCCccCCEEECC
Confidence            666554311                                                       1123334444444444


Q ss_pred             cccccccCC-cCCCCCCCCCeEecccC-ccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCC
Q 042887          395 YNQLTGTIP-HAIGELKNLQGLALVRN-SLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN  472 (628)
Q Consensus       395 ~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N  472 (628)
                      +|++.+..+ ..+..+++|++|++++| .+.+..+..|..+++|++|++++|++++..|..+..+++|    +.|++++|
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n  208 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV----SHLILHMK  208 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE----EEEEEECS
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC----CeecCCCC
Confidence            444443222 24555555555555555 3444445555556666666666666665556666666655    56666666


Q ss_pred             cCccccchhhhccCCCCEeeCcCCcCcccCCcccc---CCCCCCeEECcCceeee----ecCccccCCCCCCEEECCCCc
Q 042887          473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLS---ACTTLEYLHLQGNSFSG----SLPLSLKTLKSIKELDLSRNN  545 (628)
Q Consensus       473 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~  545 (628)
                      ++....+..+..+++|++|++++|++++..+..+.   ..+.++.+++++|.+.+    .+|..+..+++|++|++++|+
T Consensus       209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            66543333344567777777777777654443332   34567777777777764    356677788888888888888


Q ss_pred             ccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887          546 LSGQIPKYLENLLFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       546 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  575 (628)
                      ++...+..|..+++|++|++++|++++.+|
T Consensus       289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            885444446788888888888888887766

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=4.4e-30  Score=256.70  Aligned_cols=190  Identities=21%  Similarity=0.238  Sum_probs=125.5

Q ss_pred             hccCCcCeeeeccccccccCC-cCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccccc-ccCCcccCCcch
Q 042887          383 KNLVNINAFGVEYNQLTGTIP-HAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG-NVPSSLGNCQNL  460 (628)
Q Consensus       383 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  460 (628)
                      ..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|
T Consensus        98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A           98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence            334444444444444443332 345556666666666666666666666666667777777776664 456666666666


Q ss_pred             hcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCC-CCCEE
Q 042887          461 MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLK-SIKEL  539 (628)
Q Consensus       461 ~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L  539 (628)
                          +.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|++|
T Consensus       178 ----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L  253 (306)
T 2z66_A          178 ----TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  253 (306)
T ss_dssp             ----CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred             ----CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence                6677777777766677777777888888888888766666777788888888888888877777777774 78888


Q ss_pred             ECCCCcccccCc--hhhhcccCCCeEeccCCcCcccCCC
Q 042887          540 DLSRNNLSGQIP--KYLENLLFLAYLNLSYNHFEGEVPR  576 (628)
Q Consensus       540 ~Ls~N~l~~~~~--~~~~~l~~L~~L~ls~N~l~~~~p~  576 (628)
                      ++++|++++..+  .....+...+.+.+..+.+.+..|.
T Consensus       254 ~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          254 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             ECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             EccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            888888875422  2233344455566666666665553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=6.7e-30  Score=260.76  Aligned_cols=278  Identities=18%  Similarity=0.162  Sum_probs=185.1

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887          164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS  243 (628)
Q Consensus       164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~  243 (628)
                      ....|.++|+++. +|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus        33 ~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           33 NGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             TSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            3457888888874 555443  4888888888888877777888888888888888888877788888888888888888


Q ss_pred             ccCcccCChhhhhCCCCCcEEecccCccccccc-ccccCCCCCCEEEcccc-cceeecccccccCCCCCEEEccCCcCCC
Q 042887          244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLP-HSFSNASNLQVLDVYKN-HFSGQVKIDFNRLSNLSRLFLSKNNLGT  321 (628)
Q Consensus       244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~n~l~~  321 (628)
                      |.++ .+|...+..+++|++|++++|+++...+ ..|.++++|++|++++| .++...+..|..+++|++|++++|.++.
T Consensus       110 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            8888 6777766678888888888888885544 47888888888888888 4777777788888888888888888876


Q ss_pred             cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccccc
Q 042887          322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGT  401 (628)
Q Consensus       322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  401 (628)
                      ..      +..+..+++|+.|++++|.++......+.... +++.|++++|.+++..+..+..                 
T Consensus       189 ~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~-----------------  244 (353)
T 2z80_A          189 YE------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-SVECLELRDTDLDTFHFSELST-----------------  244 (353)
T ss_dssp             EC------TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-TEEEEEEESCBCTTCCCC---------------------
T ss_pred             cC------HHHHhccccCCeecCCCCccccchhhhhhhcc-cccEEECCCCcccccccccccc-----------------
Confidence            43      23455667777777777776544333332232 5666666666555433322211                 


Q ss_pred             CCcCCCCCCCCCeEecccCcccc----ccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc
Q 042887          402 IPHAIGELKNLQGLALVRNSLRG----TIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS  477 (628)
Q Consensus       402 ~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~  477 (628)
                          ......++.++++++.+.+    .+|..+..+++|++|++++|+++...+..+..+++|    +.|++++|.+.+.
T Consensus       245 ----~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L----~~L~L~~N~~~~~  316 (353)
T 2z80_A          245 ----GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL----QKIWLHTNPWDCS  316 (353)
T ss_dssp             ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTC----CEEECCSSCBCCC
T ss_pred             ----ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCC----CEEEeeCCCccCc
Confidence                1122334444444444443    244555566666666666666653222224555555    5566666666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1e-29  Score=254.03  Aligned_cols=263  Identities=22%  Similarity=0.245  Sum_probs=146.9

Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCCcEEecccCccccc--ccccccCCCCCCEEEcccccceeecccccccCCCCCEE
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS--LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRL  312 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  312 (628)
                      +|++|++++|.++ .+|..++..+++|++|++++|+++..  .+..+..+++|++|++++|.++.. +..+..+++|++|
T Consensus        29 ~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L  106 (306)
T 2z66_A           29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHL  106 (306)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEE
T ss_pred             CCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCEE
Confidence            4444444444444 44444433444555555555544422  134444556666666666665532 3335555555555


Q ss_pred             EccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeee
Q 042887          313 FLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFG  392 (628)
Q Consensus       313 ~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  392 (628)
                      ++++|+++....                                                      ...+..+++|++|+
T Consensus       107 ~l~~n~l~~~~~------------------------------------------------------~~~~~~l~~L~~L~  132 (306)
T 2z66_A          107 DFQHSNLKQMSE------------------------------------------------------FSVFLSLRNLIYLD  132 (306)
T ss_dssp             ECTTSEEESSTT------------------------------------------------------TTTTTTCTTCCEEE
T ss_pred             ECCCCccccccc------------------------------------------------------chhhhhccCCCEEE
Confidence            555555443211                                                      01233344444444


Q ss_pred             eccccccccCCcCCCCCCCCCeEecccCcccc-ccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCC
Q 042887          393 VEYNQLTGTIPHAIGELKNLQGLALVRNSLRG-TIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSG  471 (628)
Q Consensus       393 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~  471 (628)
                      +++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|    +.|++++
T Consensus       133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~  208 (306)
T 2z66_A          133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL----QVLNMSH  208 (306)
T ss_dssp             CTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC----CEEECTT
T ss_pred             CCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC----CEEECCC
Confidence            44444444444555555556666666665554 355556666666666666666665556666666666    6666666


Q ss_pred             CcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCC-CCCeEECcCceeeeecC--ccccCCCCCCEEECCCCcccc
Q 042887          472 NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT-TLEYLHLQGNSFSGSLP--LSLKTLKSIKELDLSRNNLSG  548 (628)
Q Consensus       472 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~  548 (628)
                      |++++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++++.-+  .....+...+.+.+..+.+..
T Consensus       209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C  288 (306)
T 2z66_A          209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC  288 (306)
T ss_dssp             SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBE
T ss_pred             CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccccc
Confidence            666655555667777777777777777777777777763 77777777777764321  111223344455566677776


Q ss_pred             cCchhhhcc
Q 042887          549 QIPKYLENL  557 (628)
Q Consensus       549 ~~~~~~~~l  557 (628)
                      ..|+.+.+.
T Consensus       289 ~~p~~~~g~  297 (306)
T 2z66_A          289 ATPSDKQGM  297 (306)
T ss_dssp             EESGGGTTC
T ss_pred             CCchhhCCc
Confidence            667666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=1.2e-29  Score=250.72  Aligned_cols=231  Identities=24%  Similarity=0.219  Sum_probs=179.3

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCc-cccccCccccCCCCCCeEec
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNS-LRGTIPDTLGNLTLLNRLFL  441 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  441 (628)
                      +++.|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|. +++..|..|..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            56667777777776666777888888888888888887777788888888888888886 77666777888888888888


Q ss_pred             CCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCce
Q 042887          442 GFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS  521 (628)
Q Consensus       442 ~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  521 (628)
                      ++|++++..|..+.++++|    +.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus       113 ~~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAAL----QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTC----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcCCEECHhHhhCCcCC----CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence            8888887777777777777    778888888886666678888888888888888887666678888888888888888


Q ss_pred             eeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCccc
Q 042887          522 FSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGG  597 (628)
Q Consensus       522 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  597 (628)
                      +++..|..+..+++|+.|++++|++++..++.+..+++|++|++++|++.+..+.......++......+...|..
T Consensus       189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~  264 (285)
T 1ozn_A          189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL  264 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred             ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence            8877788888888888888888888877777788888888888888888876654333333444445556666653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.3e-31  Score=291.60  Aligned_cols=403  Identities=12%  Similarity=0.077  Sum_probs=289.6

Q ss_pred             CcCcccEEEccCCccc---cccc------------hhhhCCCCCCEEecccCcCcccccccccCC--CCCCEeeccccc-
Q 042887          160 NLLKLEMIDVGDNQLI---GKFP------------DFIANFSALEAIDISANMLGGRIPDSLCQL--RSLNYLSISENN-  221 (628)
Q Consensus       160 ~l~~L~~L~Ls~n~l~---~~~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~-  221 (628)
                      .+++|+.|+++++...   +.+|            .....+++|++|+|++|.+++..+..+...  .+|++|+|++|. 
T Consensus        71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~  150 (592)
T 3ogk_B           71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG  150 (592)
T ss_dssp             HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred             hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence            4567899999774321   1222            223378999999999998887777777664  459999999886 


Q ss_pred             Ccc-cCCcCccCCCCCCEEEeecccCcccCCh---hhhhCCCCCcEEecccCccc----ccccccccCCCCCCEEEcccc
Q 042887          222 FSC-KLPLSIWNISSLEIISLHSNRFEGSLPL---NIGFNIPNVNFLSVGQNNFT----GSLPHSFSNASNLQVLDVYKN  293 (628)
Q Consensus       222 i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N  293 (628)
                      ++. .++.....+++|++|+|++|.+++.-..   .+...+++|++|++++|.++    ...+..+.++++|++|++++|
T Consensus       151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence            221 1222334789999999999988754221   23345899999999999987    344555678899999999999


Q ss_pred             cceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCc
Q 042887          294 HFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQ  373 (628)
Q Consensus       294 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  373 (628)
                      .+.+ .+..+..+++|++|+++........   ......+..+++|+.++++++.. ...+..+...+ +|+.|++++|.
T Consensus       231 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~-~L~~L~Ls~~~  304 (592)
T 3ogk_B          231 EILE-LVGFFKAAANLEEFCGGSLNEDIGM---PEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAA-QIRKLDLLYAL  304 (592)
T ss_dssp             BGGG-GHHHHHHCTTCCEEEECBCCCCTTC---TTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGG-GCCEEEETTCC
T ss_pred             cHHH-HHHHHhhhhHHHhhcccccccccch---HHHHHHhhccccccccCccccch-hHHHHHHhhcC-CCcEEecCCCc
Confidence            9886 4567888999999999864322111   12334567778999999887532 22333344444 89999999999


Q ss_pred             ceeeCc-hhhhccCCcCeeeeccccccc-cCCcCCCCCCCCCeEecc-----------cCcccccc-CccccCCCCCCeE
Q 042887          374 ISGTIP-SEIKNLVNINAFGVEYNQLTG-TIPHAIGELKNLQGLALV-----------RNSLRGTI-PDTLGNLTLLNRL  439 (628)
Q Consensus       374 l~~~~~-~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~-----------~n~l~~~~-~~~~~~l~~L~~L  439 (628)
                      +++... ..+..+++|+.|+++ +.+.+ ..+..+..+++|++|+++           .|.+++.. +.....+++|++|
T Consensus       305 l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L  383 (592)
T 3ogk_B          305 LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM  383 (592)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred             CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence            765433 346889999999998 44433 333444668899999999           36666432 2234568999999


Q ss_pred             ecCCcccccccCCcccC-CcchhcccceEEcC----CCcCccc-----cchhhhccCCCCEeeCcCCc--CcccCCcccc
Q 042887          440 FLGFNNLQGNVPSSLGN-CQNLMTLSRLLDLS----GNLLGGS-----IPLEVGNLRNLAEFDLSENH--FSNEIPVTLS  507 (628)
Q Consensus       440 ~L~~N~l~~~~~~~~~~-l~~L~~l~~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~  507 (628)
                      +++.|.+++..+..+.. +++|    +.|+++    .|.+++.     ++..+.++++|++|++++|.  +++..+..+.
T Consensus       384 ~l~~~~l~~~~~~~l~~~~~~L----~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~  459 (592)
T 3ogk_B          384 AVYVSDITNESLESIGTYLKNL----CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG  459 (592)
T ss_dssp             EEEESCCCHHHHHHHHHHCCSC----CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred             EeecCCccHHHHHHHHhhCCCC----cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence            99999998777666665 7777    788885    7788753     33447779999999998644  6655444443


Q ss_pred             -CCCCCCeEECcCceeee-ecCccccCCCCCCEEECCCCccccc-CchhhhcccCCCeEeccCCcCccc
Q 042887          508 -ACTTLEYLHLQGNSFSG-SLPLSLKTLKSIKELDLSRNNLSGQ-IPKYLENLLFLAYLNLSYNHFEGE  573 (628)
Q Consensus       508 -~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~  573 (628)
                       .+++|++|++++|++++ .++..+.++++|++|++++|.+++. .+..+..+++|++|++++|+++..
T Consensus       460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence             48899999999999886 3455567889999999999998754 344567899999999999998764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2.6e-28  Score=257.57  Aligned_cols=249  Identities=21%  Similarity=0.227  Sum_probs=190.2

Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL  314 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  314 (628)
                      ....++.+++.++ .+|..+   .+++++|+|++|++++..+..|.++++|++|++++|+++++.+..|.++++|++|++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            3567888888887 677655   367788888888888777777888888888888888887777777777777777777


Q ss_pred             cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887          315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE  394 (628)
Q Consensus       315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  394 (628)
                      ++|+++.                                                       ..+..+..+++|++|+++
T Consensus       131 ~~n~l~~-------------------------------------------------------~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A          131 FDNWLTV-------------------------------------------------------IPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             CSSCCSB-------------------------------------------------------CCTTTSSSCTTCCEEECC
T ss_pred             CCCcCCc-------------------------------------------------------cChhhhcccCCCCEEECC
Confidence            7766543                                                       223446677888899999


Q ss_pred             cccccccCCcCCCCCCCCCeEeccc-CccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCc
Q 042887          395 YNQLTGTIPHAIGELKNLQGLALVR-NSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL  473 (628)
Q Consensus       395 ~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~  473 (628)
                      +|++.+..+..|..+++|+.|++++ |.+....+..|..+++|++|++++|++++. | .+..+++|    +.|++++|+
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L----~~L~Ls~N~  229 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGL----EELEMSGNH  229 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTC----CEEECTTSC
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccc----cEEECcCCc
Confidence            9998877777888899999999988 555555555688888888888888888743 3 35666666    778888888


Q ss_pred             CccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccc
Q 042887          474 LGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSG  548 (628)
Q Consensus       474 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  548 (628)
                      +++..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++..
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            887777778888888888888888887777778888888888888888876666677778888888888887763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=4.5e-29  Score=246.61  Aligned_cols=252  Identities=22%  Similarity=0.213  Sum_probs=134.1

Q ss_pred             CEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccC
Q 042887          237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK  316 (628)
Q Consensus       237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  316 (628)
                      ++++.+++.++ .+|..+   .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45666666665 555433   35666666666666655555666666666666666666665555566666666666655


Q ss_pred             Cc-CCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecc
Q 042887          317 NN-LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEY  395 (628)
Q Consensus       317 n~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  395 (628)
                      |. ++.+                                                       .+..+..+++|++|++++
T Consensus        90 n~~l~~~-------------------------------------------------------~~~~~~~l~~L~~L~l~~  114 (285)
T 1ozn_A           90 NAQLRSV-------------------------------------------------------DPATFHGLGRLHTLHLDR  114 (285)
T ss_dssp             CTTCCCC-------------------------------------------------------CTTTTTTCTTCCEEECTT
T ss_pred             CCCcccc-------------------------------------------------------CHHHhcCCcCCCEEECCC
Confidence            54 3221                                                       122233334444444444


Q ss_pred             ccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCc
Q 042887          396 NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLG  475 (628)
Q Consensus       396 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~  475 (628)
                      |.+.+..+..+..+++|++|++++|++++..+..|..+++|+                            .|++++|+++
T Consensus       115 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----------------------------~L~l~~n~l~  166 (285)
T 1ozn_A          115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT----------------------------HLFLHGNRIS  166 (285)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC----------------------------EEECCSSCCC
T ss_pred             CcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc----------------------------EEECCCCccc
Confidence            444433344444444444444444444433333334444444                            4444444444


Q ss_pred             cccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhh
Q 042887          476 GSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLE  555 (628)
Q Consensus       476 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  555 (628)
                      +..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .
T Consensus       167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~  245 (285)
T 1ozn_A          167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-P  245 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-H
T ss_pred             ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-H
Confidence            333334555556666666666666555566666666666666666666544455666666666666666665432211 1


Q ss_pred             cccCCCeEeccCCcCcccCCC
Q 042887          556 NLLFLAYLNLSYNHFEGEVPR  576 (628)
Q Consensus       556 ~l~~L~~L~ls~N~l~~~~p~  576 (628)
                      -...++.+..+.|.+.+..|.
T Consensus       246 ~~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          246 LWAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             HHHHHHHCCSEECCCBEEESG
T ss_pred             HHHHHHhcccccCccccCCch
Confidence            112344455666777666664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3.5e-28  Score=255.67  Aligned_cols=248  Identities=21%  Similarity=0.244  Sum_probs=184.5

Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL  314 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  314 (628)
                      ....++.+++.++ .+|..+   .++++.|+|++|+++...+..|.++++|++|+|++|+++.+.+..|.++++|++|++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4567888888887 777765   367788888888888777777888888888888888887777777777777777777


Q ss_pred             cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887          315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE  394 (628)
Q Consensus       315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  394 (628)
                      ++|+++.                                                       ..+..|..+++|+.|+++
T Consensus       120 ~~n~l~~-------------------------------------------------------~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A          120 FDNRLTT-------------------------------------------------------IPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             CSSCCSS-------------------------------------------------------CCTTTSCSCSSCCEEECC
T ss_pred             CCCcCCe-------------------------------------------------------eCHhHhhccccCceeeCC
Confidence            7776643                                                       222346677888888888


Q ss_pred             cccccccCCcCCCCCCCCCeEeccc-CccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCc
Q 042887          395 YNQLTGTIPHAIGELKNLQGLALVR-NSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL  473 (628)
Q Consensus       395 ~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~  473 (628)
                      +|.+.+..+..|..+++|++|++++ |.+....+..|..+++|++|++++|+++ .+| .+..+++|    +.|+|++|+
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L----~~L~Ls~N~  218 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL----DELDLSGNH  218 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSC----CEEECTTSC
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCccc----CEEECCCCc
Confidence            8888877777888888888888888 4555455556788888888888888887 333 35556666    677777777


Q ss_pred             CccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887          474 LGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       474 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  547 (628)
                      +++..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus       219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            77766777777777777777777777777777777777777777777777666666777777777777777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3.7e-28  Score=255.45  Aligned_cols=249  Identities=22%  Similarity=0.287  Sum_probs=212.6

Q ss_pred             CCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEc
Q 042887          211 SLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDV  290 (628)
Q Consensus       211 ~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  290 (628)
                      ..+.++.+++.++ .+|..+.  +++++|+|++|.++ .++...+..+++|++|+|++|+++...+..|.++++|++|+|
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4678999999988 5776664  68999999999998 565555667999999999999999888889999999999999


Q ss_pred             ccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEcc
Q 042887          291 YKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMG  370 (628)
Q Consensus       291 ~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  370 (628)
                      ++|+++.+.+..|..+++|++|++++|.++.                                                 
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-------------------------------------------------  150 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIES-------------------------------------------------  150 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-------------------------------------------------
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccc-------------------------------------------------
Confidence            9999998887788888888888888876643                                                 


Q ss_pred             CCcceeeCchhhhccCCcCeeeecc-ccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccc
Q 042887          371 DNQISGTIPSEIKNLVNINAFGVEY-NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN  449 (628)
Q Consensus       371 ~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  449 (628)
                            ..+..|..+++|+.|++++ +.+....+..|..+++|++|++++|.++. +| .+..+++|+.|++++|++++.
T Consensus       151 ------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          151 ------IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             ------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             ------cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence                  2234567788899999998 45555556689999999999999999984 45 488899999999999999988


Q ss_pred             cCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeee
Q 042887          450 VPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSG  524 (628)
Q Consensus       450 ~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  524 (628)
                      .|..|.++++|    +.|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus       223 ~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          223 RPGSFQGLMHL----QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CTTTTTTCTTC----CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             ChhhhccCccC----CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            89999999988    889999999998888899999999999999999998888888999999999999999873

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=3.6e-28  Score=256.49  Aligned_cols=247  Identities=20%  Similarity=0.192  Sum_probs=198.0

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887          164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS  243 (628)
Q Consensus       164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~  243 (628)
                      ...++.+++.++. +|..+.  +++++|+|++|+++++.+..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus        56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            4678888888874 555443  6899999999999988888999999999999999999988888899999999999999


Q ss_pred             ccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccc-ccceeecccccccCCCCCEEEccCCcCCCc
Q 042887          244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYK-NHFSGQVKIDFNRLSNLSRLFLSKNNLGTE  322 (628)
Q Consensus       244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  322 (628)
                      |.++ .+|...+..+++|++|+|++|+++...+..|.++++|++|++++ |.+..+.+..|..+++|++|++++|+++.+
T Consensus       133 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            9998 67777677799999999999999977777899999999999998 566766677788999999999999988754


Q ss_pred             CCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccC
Q 042887          323 STSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTI  402 (628)
Q Consensus       323 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  402 (628)
                      +        .+..+++|                         +.|++++|.+++..|..|.++++|+.|++++|++.+..
T Consensus       212 ~--------~~~~l~~L-------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  258 (452)
T 3zyi_A          212 P--------NLTPLVGL-------------------------EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE  258 (452)
T ss_dssp             C--------CCTTCTTC-------------------------CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred             c--------cccccccc-------------------------cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence            2        23344444                         44555555555566677777788888888888888777


Q ss_pred             CcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccc
Q 042887          403 PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ  447 (628)
Q Consensus       403 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  447 (628)
                      +..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus       259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            778888888888888888888777777778888888888888776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=5.1e-30  Score=257.23  Aligned_cols=266  Identities=17%  Similarity=0.192  Sum_probs=161.9

Q ss_pred             EEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887          238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN  317 (628)
Q Consensus       238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n  317 (628)
                      ..+++.+.+. ..+..++..+++|++|++++|++++..|..|+++++|++|++++|++++..+  |..+++|++|++++|
T Consensus        14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            3444455444 3344444445566666666666666555666666666666666666665443  566666666666666


Q ss_pred             cCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccc
Q 042887          318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ  397 (628)
Q Consensus       318 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  397 (628)
                      .+++++           ..++|+.|+                         +++|.+++..+.   .+            
T Consensus        91 ~l~~l~-----------~~~~L~~L~-------------------------l~~n~l~~~~~~---~~------------  119 (317)
T 3o53_A           91 YVQELL-----------VGPSIETLH-------------------------AANNNISRVSCS---RG------------  119 (317)
T ss_dssp             EEEEEE-----------ECTTCCEEE-------------------------CCSSCCSEEEEC---CC------------
T ss_pred             cccccc-----------CCCCcCEEE-------------------------CCCCccCCcCcc---cc------------
Confidence            554311           112233333                         333332222111   12            


Q ss_pred             ccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCccc-CCcchhcccceEEcCCCcCcc
Q 042887          398 LTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG-NCQNLMTLSRLLDLSGNLLGG  476 (628)
Q Consensus       398 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~l~~~L~Ls~N~l~~  476 (628)
                                  ++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|    +.|++++|++++
T Consensus       120 ------------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L----~~L~L~~N~l~~  183 (317)
T 3o53_A          120 ------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----EHLNLQYNFIYD  183 (317)
T ss_dssp             ------------SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC----CEEECTTSCCCE
T ss_pred             ------------CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC----CEEECCCCcCcc
Confidence                        3344444444444444444444455555555555555544443332 34444    555666666654


Q ss_pred             ccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc-ccCchhhh
Q 042887          477 SIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS-GQIPKYLE  555 (628)
Q Consensus       477 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~  555 (628)
                      . + ....+++|++|++++|++++. |..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ +..|.++.
T Consensus       184 ~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          184 V-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             E-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             c-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            3 2 222477888888888888854 445888899999999999998 56778889999999999999998 77888999


Q ss_pred             cccCCCeEeccC-CcCcccCCCC
Q 042887          556 NLLFLAYLNLSY-NHFEGEVPRK  577 (628)
Q Consensus       556 ~l~~L~~L~ls~-N~l~~~~p~~  577 (628)
                      .+++|+.+++++ +.++|..|..
T Consensus       260 ~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          260 KNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             TCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             ccccceEEECCCchhccCCchhc
Confidence            999999999994 4566665543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=8.6e-31  Score=287.06  Aligned_cols=396  Identities=17%  Similarity=0.113  Sum_probs=292.5

Q ss_pred             CcCcccEEEccCCccccccchhhhCC--CCCCEEecccCc-Ccc-cccccccCCCCCCEeecccccCcccC----CcCcc
Q 042887          160 NLLKLEMIDVGDNQLIGKFPDFIANF--SALEAIDISANM-LGG-RIPDSLCQLRSLNYLSISENNFSCKL----PLSIW  231 (628)
Q Consensus       160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~----p~~~~  231 (628)
                      ++++|++|+|++|.+++..+..+...  .+|++|+|++|. ++. ..+.....+++|++|+|++|.+++..    +..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            57889999999999988777777764  459999999987 221 12233457899999999999987653    33456


Q ss_pred             CCCCCCEEEeecccCcc----cCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccce---eecccccc
Q 042887          232 NISSLEIISLHSNRFEG----SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFS---GQVKIDFN  304 (628)
Q Consensus       232 ~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~---~~~~~~~~  304 (628)
                      .+++|++|++++|.+++    .++. ++..+++|+.|++++|.+.+ .+..+.++++|++|++++....   ......+.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            78999999999999972    2222 23358999999999999985 6788999999999999864332   12334567


Q ss_pred             cCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhc
Q 042887          305 RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKN  384 (628)
Q Consensus       305 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  384 (628)
                      .+++|+.|+++++...       ..+..+..+++|+.|++++|.+++.....+....++|+.|+++++...+.++.....
T Consensus       268 ~~~~L~~L~l~~~~~~-------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~  340 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPN-------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY  340 (592)
T ss_dssp             CCTTCCEEEETTCCTT-------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred             ccccccccCccccchh-------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence            7899999999886433       234456678899999999999876655443333348999999944333334445578


Q ss_pred             cCCcCeeeecc-----------ccccccC-CcCCCCCCCCCeEecccCccccccCccccC-CCCCCeEecC----Ccccc
Q 042887          385 LVNINAFGVEY-----------NQLTGTI-PHAIGELKNLQGLALVRNSLRGTIPDTLGN-LTLLNRLFLG----FNNLQ  447 (628)
Q Consensus       385 l~~L~~L~l~~-----------n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~N~l~  447 (628)
                      +++|+.|++++           |.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.++
T Consensus       341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~  420 (592)
T 3ogk_B          341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT  420 (592)
T ss_dssp             CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred             CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence            89999999993           5665432 222445899999999999998877777765 8999999996    67777


Q ss_pred             cc-----cCCcccCCcchhcccceEEcCCCc--Cccccchhhhc-cCCCCEeeCcCCcCccc-CCccccCCCCCCeEECc
Q 042887          448 GN-----VPSSLGNCQNLMTLSRLLDLSGNL--LGGSIPLEVGN-LRNLAEFDLSENHFSNE-IPVTLSACTTLEYLHLQ  518 (628)
Q Consensus       448 ~~-----~~~~~~~l~~L~~l~~~L~Ls~N~--l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls  518 (628)
                      +.     .+..+.++++|    +.|++++|.  +++..+..+.. +++|++|++++|++++. .+..+.++++|++|+++
T Consensus       421 ~~p~~~~~~~~~~~~~~L----~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          421 DLPLDNGVRSLLIGCKKL----RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             SCCCHHHHHHHHHHCTTC----CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred             CchHHHHHHHHHHhCCCC----CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence            43     23335667777    889997644  66555555544 89999999999999863 45556789999999999


Q ss_pred             Cceeeee-cCccccCCCCCCEEECCCCcccccCchhh-hcccCCCeEeccCC
Q 042887          519 GNSFSGS-LPLSLKTLKSIKELDLSRNNLSGQIPKYL-ENLLFLAYLNLSYN  568 (628)
Q Consensus       519 ~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ls~N  568 (628)
                      +|.+++. ++.....+++|++|++++|+++......+ ..++.+....+..+
T Consensus       497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            9998754 34445678999999999999986544433 35666666655554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=1.8e-29  Score=253.16  Aligned_cols=260  Identities=19%  Similarity=0.198  Sum_probs=174.8

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      ..++..+++.+.+....+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+  +..+++|++|++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            346777888888877777777788889999999999988878888999999999999998886544  888888888888


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT  321 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~  321 (628)
                      ++|.++ .++.     .++|++|++++|++++..+..   +++|++|++++|++++..+..|..+++|++|++++|.++.
T Consensus        88 s~n~l~-~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           88 NNNYVQ-ELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             CSSEEE-EEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             cCCccc-cccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            888887 3431     467777777777777554433   4566777777777766656566666666666666665543


Q ss_pred             cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhh-hccCCcCeeeeccccccc
Q 042887          322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTG  400 (628)
Q Consensus       322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~  400 (628)
                                                                             ..+..+ ..+++|++|++++|.+++
T Consensus       159 -------------------------------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          159 -------------------------------------------------------VNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             -------------------------------------------------------EEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             -------------------------------------------------------ccHHHHhhccCcCCEEECCCCcCcc
Confidence                                                                   112222 234555555555555554


Q ss_pred             cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCc-cccc
Q 042887          401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLG-GSIP  479 (628)
Q Consensus       401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~-~~~~  479 (628)
                      ..  ....+++|++|++++|++++. |..+..+++|++|++++|+++ .+|..+..+++|    +.|++++|.+. +..+
T Consensus       184 ~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L----~~L~l~~N~~~~~~~~  255 (317)
T 3o53_A          184 VK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL----EHFDLRGNGFHCGTLR  255 (317)
T ss_dssp             EE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC----CEEECTTCCCBHHHHH
T ss_pred             cc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCC----CEEEccCCCccCcCHH
Confidence            31  122366777777777777643 334666777777777777776 345556666666    66677777666 4555


Q ss_pred             hhhhccCCCCEeeCcC
Q 042887          480 LEVGNLRNLAEFDLSE  495 (628)
Q Consensus       480 ~~~~~l~~L~~L~Ls~  495 (628)
                      ..+..+++|+.|++++
T Consensus       256 ~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          256 DFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             HHHHTCHHHHHHHHHH
T ss_pred             HHHhccccceEEECCC
Confidence            6666666666666663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=3.3e-28  Score=244.78  Aligned_cols=234  Identities=19%  Similarity=0.206  Sum_probs=153.2

Q ss_pred             cCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEE
Q 042887          161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIIS  240 (628)
Q Consensus       161 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~  240 (628)
                      ..+++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467888999999988 66777888889999999999888 77888888899999999999888 6788888888999999


Q ss_pred             eecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCC
Q 042887          241 LHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLG  320 (628)
Q Consensus       241 L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~  320 (628)
                      +++|.+.+.+|..+..       .         ..+..|.++++|++|++++|+++ ..|..+..+++|++|++++|.++
T Consensus       157 L~~n~~~~~~p~~~~~-------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          157 IRACPELTELPEPLAS-------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEETTCCCCCSCSEE-------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             CCCCCCccccChhHhh-------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            9988877777765532       0         11223455666666666666666 34455666666666666666554


Q ss_pred             CcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccc
Q 042887          321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG  400 (628)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  400 (628)
                      .++       ..+..+++|+.|+++                         +|.+.+.+|..+..+++|+.|++++|.+.+
T Consensus       220 ~l~-------~~l~~l~~L~~L~Ls-------------------------~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          220 ALG-------PAIHHLPKLEELDLR-------------------------GCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             CCC-------GGGGGCTTCCEEECT-------------------------TCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             cCc-------hhhccCCCCCEEECc-------------------------CCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence            321       112222222222222                         222223344455556666666666666665


Q ss_pred             cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccc
Q 042887          401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNL  446 (628)
Q Consensus       401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  446 (628)
                      .+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+
T Consensus       268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            6666666666666666666666666666666666666666665544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=4.3e-27  Score=254.38  Aligned_cols=109  Identities=28%  Similarity=0.337  Sum_probs=74.3

Q ss_pred             CCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCC
Q 042887          434 TLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLE  513 (628)
Q Consensus       434 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  513 (628)
                      ++|+.|++++|.++ .+|..   +++|    +.|++++|++++ +|   ..+++|++|++++|+++. +|.   .+++|+
T Consensus       201 ~~L~~L~L~~N~l~-~l~~~---~~~L----~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~  264 (622)
T 3g06_A          201 SELYKLWAYNNRLT-SLPAL---PSGL----KELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLL  264 (622)
T ss_dssp             TTCCEEECCSSCCS-SCCCC---CTTC----CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCC
T ss_pred             chhhEEECcCCccc-ccCCC---CCCC----CEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCc
Confidence            34555555555554 22221   1333    566677776664 33   345778888888888873 444   567888


Q ss_pred             eEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccC
Q 042887          514 YLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF  559 (628)
Q Consensus       514 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  559 (628)
                      .|+|++|+|+ .+|..+..+++|+.|+|++|++++..|..+..++.
T Consensus       265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence            8888888888 67778888888888888888888888887776653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=9.7e-28  Score=241.35  Aligned_cols=201  Identities=20%  Similarity=0.337  Sum_probs=133.2

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCcccc---------CC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLG---------NL  433 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------~l  433 (628)
                      +|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+.         .+
T Consensus       105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            3444444444444 44455555666666666666665 4455566666666666666555555555443         36


Q ss_pred             CCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCC
Q 042887          434 TLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLE  513 (628)
Q Consensus       434 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  513 (628)
                      ++|++|++++|+++ .+|..+..+++|    +.|++++|++++ +|..+..+++|++|++++|++.+.+|..+..+++|+
T Consensus       183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L----~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPASIANLQNL----KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCGGGGGCTTC----CEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             CCCCEEECcCCCcC-cchHhhcCCCCC----CEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence            77777777777776 566666666666    667777777774 455677777777777777777777777777777777


Q ss_pred             eEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCc
Q 042887          514 YLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE  571 (628)
Q Consensus       514 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  571 (628)
                      +|++++|.+.+.+|..+..+++|++|+|++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            7777777777777777777777777777777777777777777777777777766543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=1.3e-26  Score=250.75  Aligned_cols=142  Identities=26%  Similarity=0.302  Sum_probs=110.2

Q ss_pred             CCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCC
Q 042887          410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLA  489 (628)
Q Consensus       410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~  489 (628)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|++++ +|..   .++|    +.|++++|.++. +|.   .+++|+
T Consensus       161 ~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L----~~L~L~~N~l~~-l~~---~~~~L~  224 (622)
T 3g06_A          161 SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSEL----YKLWAYNNRLTS-LPA---LPSGLK  224 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTC----CEEECCSSCCSS-CCC---CCTTCC
T ss_pred             CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchh----hEEECcCCcccc-cCC---CCCCCC
Confidence            345566666666653 33   335677777777777763 3332   2455    789999999984 443   358899


Q ss_pred             EeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCc
Q 042887          490 EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH  569 (628)
Q Consensus       490 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~  569 (628)
                      +|++++|++++ +|   ..+++|+.|++++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+
T Consensus       225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             EEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred             EEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence            99999999995 55   45689999999999999 5665   6789999999999999 678889999999999999999


Q ss_pred             CcccCCC
Q 042887          570 FEGEVPR  576 (628)
Q Consensus       570 l~~~~p~  576 (628)
                      +++.+|.
T Consensus       296 l~~~~~~  302 (622)
T 3g06_A          296 LSERTLQ  302 (622)
T ss_dssp             CCHHHHH
T ss_pred             CCCcCHH
Confidence            9987664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=6.4e-29  Score=248.60  Aligned_cols=252  Identities=18%  Similarity=0.186  Sum_probs=161.1

Q ss_pred             cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCc-cccccccc-------CCCCCCEeecccccCcccCCcC
Q 042887          158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLG-GRIPDSLC-------QLRSLNYLSISENNFSCKLPLS  229 (628)
Q Consensus       158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~N~i~~~~p~~  229 (628)
                      .+..++|+.|++++|.+  .+|..+...  |+.|+|++|.++ ..+|..+.       .+++|++|+|++|.+++..|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34567788889999988  567666554  888888888884 34555554       7888899999998888777877


Q ss_pred             c--cCCCCCCEEEeecccCcccCChhhhhCC-----CCCcEEecccCcccccccccccCCCCCCEEEcccccceeec--c
Q 042887          230 I--WNISSLEIISLHSNRFEGSLPLNIGFNI-----PNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQV--K  300 (628)
Q Consensus       230 ~--~~l~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~  300 (628)
                      +  ..+++|++|++++|.+++. |..+.. +     ++|++|++++|++++..|..|+++++|++|++++|++.+..  +
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            6  7888888888888888844 655443 4     77888888888877777677777777777777777765431  1


Q ss_pred             cc--cccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeC
Q 042887          301 ID--FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTI  378 (628)
Q Consensus       301 ~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  378 (628)
                      ..  +..+++|++|++++|+++.++                              .                      ..
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~------------------------------~----------------------~~  220 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPS------------------------------G----------------------VC  220 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHH------------------------------H----------------------HH
T ss_pred             HHHHhccCCCCCEEECCCCcCcchH------------------------------H----------------------HH
Confidence            22  255666666666666554211                              0                      00


Q ss_pred             chhhhccCCcCeeeeccccccccCC-cCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCC
Q 042887          379 PSEIKNLVNINAFGVEYNQLTGTIP-HAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNC  457 (628)
Q Consensus       379 ~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  457 (628)
                      ...+..+++|+.|++++|++.+..| ..+..+++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+
T Consensus       221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l  295 (312)
T 1wwl_A          221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL  295 (312)
T ss_dssp             HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred             HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence            1122344555555555555554442 33444556666666666665 4444444  5666666666666544 43 5555


Q ss_pred             cchhcccceEEcCCCcCcc
Q 042887          458 QNLMTLSRLLDLSGNLLGG  476 (628)
Q Consensus       458 ~~L~~l~~~L~Ls~N~l~~  476 (628)
                      ++|    +.|++++|.+++
T Consensus       296 ~~L----~~L~L~~N~l~~  310 (312)
T 1wwl_A          296 PQV----GNLSLKGNPFLD  310 (312)
T ss_dssp             CEE----EEEECTTCTTTC
T ss_pred             CCC----CEEeccCCCCCC
Confidence            555    566666666653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=2.9e-28  Score=243.82  Aligned_cols=242  Identities=23%  Similarity=0.230  Sum_probs=140.8

Q ss_pred             CCceeecccCCcccccchHHHhccccccEEEccCCcce-eeCchhhh-------ccCCcCeeeeccccccccCCcCC--C
Q 042887          338 QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQIS-GTIPSEIK-------NLVNINAFGVEYNQLTGTIPHAI--G  407 (628)
Q Consensus       338 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~~--~  407 (628)
                      +|+.+++++|.+  ..+..+..   .++.|++++|.+. ..+|..+.       ++++|++|++++|++.+..|..+  .
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            444445555544  22333332   2455555555552 23444333       56666666666666666566554  6


Q ss_pred             CCCCCCeEecccCccccccCccccCC-----CCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc--cch
Q 042887          408 ELKNLQGLALVRNSLRGTIPDTLGNL-----TLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS--IPL  480 (628)
Q Consensus       408 ~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~--~~~  480 (628)
                      .+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..++.+++|    +.|++++|++.+.  .+.
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL----STLDLSDNPELGERGLIS  193 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC----CEEECCSCTTCHHHHHHH
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC----CEEECCCCCcCcchHHHH
Confidence            666666666666666655 5555555     666666666666666666666666666    6666666665543  222


Q ss_pred             hh--hccCCCCEeeCcCCcCcc---cCCccccCCCCCCeEECcCceeeeecC-ccccCCCCCCEEECCCCcccccCchhh
Q 042887          481 EV--GNLRNLAEFDLSENHFSN---EIPVTLSACTTLEYLHLQGNSFSGSLP-LSLKTLKSIKELDLSRNNLSGQIPKYL  554 (628)
Q Consensus       481 ~~--~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~  554 (628)
                      .+  ..+++|++|++++|++++   .....+..+++|++|++++|++++..| ..+..+++|++|+|++|+|+ .+|..+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            33  566666777777766662   112233456666777777776665443 34455666777777777666 445444


Q ss_pred             hcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCC
Q 042887          555 ENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNER  593 (628)
Q Consensus       555 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~  593 (628)
                      .  ++|++||+++|++++. |....+++++.+++++|+.
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred             c--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence            3  5666677777766655 4455556666666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=1.4e-29  Score=277.58  Aligned_cols=398  Identities=17%  Similarity=0.157  Sum_probs=263.4

Q ss_pred             CcCcccEEEccCCccccccchhhh-CCCCCCEEecccC-cCccc-ccccccCCCCCCEeecccccCcccCCcCcc----C
Q 042887          160 NLLKLEMIDVGDNQLIGKFPDFIA-NFSALEAIDISAN-MLGGR-IPDSLCQLRSLNYLSISENNFSCKLPLSIW----N  232 (628)
Q Consensus       160 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~----~  232 (628)
                      .+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            467899999999998887777776 6899999999988 55432 344455789999999999988765544443    6


Q ss_pred             CCCCCEEEeeccc--CcccCChhhhhCCCCCcEEecccC-cccccccccccCCCCCCEEEccc-------ccceeecccc
Q 042887          233 ISSLEIISLHSNR--FEGSLPLNIGFNIPNVNFLSVGQN-NFTGSLPHSFSNASNLQVLDVYK-------NHFSGQVKID  302 (628)
Q Consensus       233 l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-------N~i~~~~~~~  302 (628)
                      +++|++|++++|.  +.......+...+++|++|++++| .++ ..+..+..+++|++|+++.       +.+.+.. ..
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~  260 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS-VA  260 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH-HH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHH-HH
Confidence            7799999999887  221111222234799999999988 444 4777788899999998544       3444433 36


Q ss_pred             cccCCCCCEE-EccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceee-Cch
Q 042887          303 FNRLSNLSRL-FLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT-IPS  380 (628)
Q Consensus       303 ~~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~  380 (628)
                      +.++++|+.| .+......       .....+..+++|+.|++++|.+++.....+....++|+.|++++| +.+. ++.
T Consensus       261 l~~~~~L~~Ls~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~  332 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPA-------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV  332 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGG-------GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred             HhcCCCcccccCCcccchh-------hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence            7788888888 33332211       122233456789999999888765544443333348888888887 4322 222


Q ss_pred             hhhccCCcCeeeecc---------ccccccCCcCCC-CCCCCCeEecccCccccccCcccc-CCCCCCeEecC--C----
Q 042887          381 EIKNLVNINAFGVEY---------NQLTGTIPHAIG-ELKNLQGLALVRNSLRGTIPDTLG-NLTLLNRLFLG--F----  443 (628)
Q Consensus       381 ~l~~l~~L~~L~l~~---------n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----  443 (628)
                      ....+++|+.|++..         +.+++.....+. .+++|+.|+++.|.+++..+..+. .+++|+.|+++  +    
T Consensus       333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~  412 (594)
T 2p1m_B          333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP  412 (594)
T ss_dssp             HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred             HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence            334578888888833         344432222222 367888888888888765555554 47888888888  3    


Q ss_pred             cccccc-----cCCcccCCcchhcccceEEcCCCcCccccchhhhc-cCCCCEeeCcCCcCcccCCccc-cCCCCCCeEE
Q 042887          444 NNLQGN-----VPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGN-LRNLAEFDLSENHFSNEIPVTL-SACTTLEYLH  516 (628)
Q Consensus       444 N~l~~~-----~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~  516 (628)
                      |.+++.     .+..+..+++|    +.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ .++++|++|+
T Consensus       413 ~~l~~~~~~~~~~~l~~~~~~L----~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~  487 (594)
T 2p1m_B          413 DYLTLEPLDIGFGAIVEHCKDL----RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE  487 (594)
T ss_dssp             CTTTCCCTHHHHHHHHHHCTTC----CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred             ccccCCchhhHHHHHHhhCCCc----cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence            455421     11124455666    7788877 666555555554 7888888888888876544444 5678888888


Q ss_pred             CcCceeeeecCc-cccCCCCCCEEECCCCcccccCchhh-hcccCCCeEeccCCcCcc
Q 042887          517 LQGNSFSGSLPL-SLKTLKSIKELDLSRNNLSGQIPKYL-ENLLFLAYLNLSYNHFEG  572 (628)
Q Consensus       517 Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ls~N~l~~  572 (628)
                      +++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.-..
T Consensus       488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~  545 (594)
T 2p1m_B          488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD  545 (594)
T ss_dssp             EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred             CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence            888888644333 34457888888888888864444444 456777666666654433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.5e-27  Score=251.31  Aligned_cols=235  Identities=17%  Similarity=0.190  Sum_probs=143.4

Q ss_pred             CCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCC
Q 042887          259 PNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQ  338 (628)
Q Consensus       259 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~  338 (628)
                      ++|+.|+|++|.+++..|..|+++++|++|+|++|.+++..+  |..+++|++|++++|.+++++           ..++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----------~~~~  100 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----------VGPS  100 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----------ECTT
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----------CCCC
Confidence            366677777777666666667777777777777777765544  666666666666666554311           0122


Q ss_pred             CceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecc
Q 042887          339 MEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALV  418 (628)
Q Consensus       339 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  418 (628)
                                               |+.|+                        +++|.+.+..+.   .+++|+.|+++
T Consensus       101 -------------------------L~~L~------------------------L~~N~l~~~~~~---~l~~L~~L~L~  128 (487)
T 3oja_A          101 -------------------------IETLH------------------------AANNNISRVSCS---RGQGKKNIYLA  128 (487)
T ss_dssp             -------------------------CCEEE------------------------CCSSCCCCEEEC---CCSSCEEEECC
T ss_pred             -------------------------cCEEE------------------------CcCCcCCCCCcc---ccCCCCEEECC
Confidence                                     22333                        333333222221   12345555555


Q ss_pred             cCccccccCccccCCCCCCeEecCCcccccccCCccc-CCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCc
Q 042887          419 RNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG-NCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENH  497 (628)
Q Consensus       419 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  497 (628)
                      +|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|    +.|+|++|.+++..+  ...+++|++|+|++|.
T Consensus       129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L----~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~  202 (487)
T 3oja_A          129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNK  202 (487)
T ss_dssp             SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC----CEEECTTSCCCEEEC--CCCCTTCCEEECCSSC
T ss_pred             CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc----cEEecCCCccccccc--cccCCCCCEEECCCCC
Confidence            5555554455555555555555555555554444443 34444    555666666654322  2346778888888888


Q ss_pred             CcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc-ccCchhhhcccCCCeEecc
Q 042887          498 FSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS-GQIPKYLENLLFLAYLNLS  566 (628)
Q Consensus       498 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ls  566 (628)
                      +++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.++..++.|+.++++
T Consensus       203 l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          203 LAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            875443 47777888888888888874 6667788888888888888887 5667778888888877776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.9e-27  Score=250.80  Aligned_cols=242  Identities=17%  Similarity=0.159  Sum_probs=179.2

Q ss_pred             CCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEe
Q 042887          337 SQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLA  416 (628)
Q Consensus       337 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  416 (628)
                      ++|+.|++++|.+++..+..+..+. +|+.|++++|.+++..|  +..+++|+.|++++|.+++..+     .++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3566666666666666555665555 67777777777776655  7788888888888888875432     27888899


Q ss_pred             cccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhh-ccCCCCEeeCcC
Q 042887          417 LVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG-NLRNLAEFDLSE  495 (628)
Q Consensus       417 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~  495 (628)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|    +.|+|++|.+++..|..+. .+++|++|+|++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV----QYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE----EEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC----CEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            999888866554   35788888999998888888888888887    7888999988887777775 688899999999


Q ss_pred             CcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCc-ccC
Q 042887          496 NHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE-GEV  574 (628)
Q Consensus       496 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~-~~~  574 (628)
                      |.+++..+  ...+++|++|+|++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+
T Consensus       179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             SCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             Cccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence            98886532  33578889999999988854 4458888889999999998885 6667888888889999988887 333


Q ss_pred             CC-CCCCCCCCccccc-------CCCCCccc
Q 042887          575 PR-KGVFGNRTGIHLI-------GNERLCGG  597 (628)
Q Consensus       575 p~-~~~~~~l~~~~~~-------~n~~~c~~  597 (628)
                      |. ...++.+..+++.       +++..|..
T Consensus       255 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~  285 (487)
T 3oja_A          255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTV  285 (487)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred             HHHHHhCCCCcEEeccccccccCCCcccccC
Confidence            32 2334444555554       66666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=1.1e-28  Score=270.44  Aligned_cols=403  Identities=11%  Similarity=0.104  Sum_probs=282.2

Q ss_pred             CcCcccEEEccCCcccc---cc------------chhhhCCCCCCEEecccCcCccccccccc-CCCCCCEeecccc-cC
Q 042887          160 NLLKLEMIDVGDNQLIG---KF------------PDFIANFSALEAIDISANMLGGRIPDSLC-QLRSLNYLSISEN-NF  222 (628)
Q Consensus       160 ~l~~L~~L~Ls~n~l~~---~~------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N-~i  222 (628)
                      .+++|+.|+++++....   ..            +.....+++|++|+|++|.+++..+..+. .+++|++|+|++| .+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            45678999999875321   11            22345788999999999999877777775 6899999999999 55


Q ss_pred             ccc-CCcCccCCCCCCEEEeecccCcccCChhh---hhCCCCCcEEecccCc--ccc-cccccccCCCCCCEEEcccc-c
Q 042887          223 SCK-LPLSIWNISSLEIISLHSNRFEGSLPLNI---GFNIPNVNFLSVGQNN--FTG-SLPHSFSNASNLQVLDVYKN-H  294 (628)
Q Consensus       223 ~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~N~--l~~-~~~~~~~~l~~L~~L~L~~N-~  294 (628)
                      +.. ++..+.++++|++|++++|.+++..+..+   ...+++|+.|++++|.  ++. ..+..+..+++|++|++++| .
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            532 34445589999999999999875443322   2247799999999997  321 12222356799999999998 4


Q ss_pred             ceeecccccccCCCCCEEEccCCcCCCcCCCCc-cccccccCCCCCcee-ecccCCcccccchHHHhccccccEEEccCC
Q 042887          295 FSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDL-DFLTLLTNCSQMEML-YLNTNKFGGVFLRSIANLSAKITVIGMGDN  372 (628)
Q Consensus       295 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~l~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  372 (628)
                      +.+ .+..+..+++|++|+++.+...- ....+ .....+.++++|+.+ .+..... ...+..+... ++|+.|++++|
T Consensus       224 ~~~-l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~-~~L~~L~L~~~  299 (594)
T 2p1m_B          224 LEK-LATLLQRAPQLEELGTGGYTAEV-RPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVC-SRLTTLNLSYA  299 (594)
T ss_dssp             HHH-HHHHHHHCTTCSEEECSBCCCCC-CHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHH-TTCCEEECTTC
T ss_pred             HHH-HHHHHhcCCcceEcccccccCcc-chhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhh-CCCCEEEccCC
Confidence            444 66678889999999977654210 00000 122356788899988 4443322 1222222233 48999999999


Q ss_pred             cceeeCc-hhhhccCCcCeeeecccccccc-CCcCCCCCCCCCeEecc---------cCccccccCcccc-CCCCCCeEe
Q 042887          373 QISGTIP-SEIKNLVNINAFGVEYNQLTGT-IPHAIGELKNLQGLALV---------RNSLRGTIPDTLG-NLTLLNRLF  440 (628)
Q Consensus       373 ~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~---------~n~l~~~~~~~~~-~l~~L~~L~  440 (628)
                      .+++... ..+..+++|+.|++++| +.+. .+.....+++|++|+++         .+.+++.....+. .+++|+.|.
T Consensus       300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~  378 (594)
T 2p1m_B          300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL  378 (594)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence            9775432 23568899999999988 4432 22223357899999994         3556544333333 489999999


Q ss_pred             cCCcccccccCCccc-CCcchhcccceEEcC--C----CcCccc-----cchhhhccCCCCEeeCcCCcCcccCCccccC
Q 042887          441 LGFNNLQGNVPSSLG-NCQNLMTLSRLLDLS--G----NLLGGS-----IPLEVGNLRNLAEFDLSENHFSNEIPVTLSA  508 (628)
Q Consensus       441 L~~N~l~~~~~~~~~-~l~~L~~l~~~L~Ls--~----N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  508 (628)
                      ++.|.+++..+..+. .+++|    +.|+++  +    |.+++.     ++..+..+++|++|++++ .+++..+..+..
T Consensus       379 ~~~~~l~~~~~~~l~~~~~~L----~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~  453 (594)
T 2p1m_B          379 YFCRQMTNAALITIARNRPNM----TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT  453 (594)
T ss_dssp             EEESCCCHHHHHHHHHHCTTC----CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH
T ss_pred             HhcCCcCHHHHHHHHhhCCCc----ceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH
Confidence            999999876655554 47777    788998  4    566632     222367789999999987 777655555555


Q ss_pred             -CCCCCeEECcCceeeeecCccc-cCCCCCCEEECCCCcccccCch-hhhcccCCCeEeccCCcCcc
Q 042887          509 -CTTLEYLHLQGNSFSGSLPLSL-KTLKSIKELDLSRNNLSGQIPK-YLENLLFLAYLNLSYNHFEG  572 (628)
Q Consensus       509 -l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ls~N~l~~  572 (628)
                       +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++.
T Consensus       454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence             8999999999999976555555 6789999999999999755444 44568999999999999854

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=5.8e-26  Score=223.16  Aligned_cols=210  Identities=21%  Similarity=0.240  Sum_probs=183.7

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG  442 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (628)
                      +++.|++++|.+++..+..+.++++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            67788888888887777788999999999999999998888889999999999999999998888889999999999999


Q ss_pred             CcccccccCCcccCCcchhcccceEEcCCCcCccc-cchhhhccCCCCEeeCcCCcCcccCCccccCCCCCC----eEEC
Q 042887          443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS-IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLE----YLHL  517 (628)
Q Consensus       443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~L  517 (628)
                      +|++++..+..+..+++|    +.|++++|++++. +|..+..+++|++|++++|++++..+..+..+++|+    .|++
T Consensus       109 ~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTL----KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTC----CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             CCCccccCchhcccCCCC----CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            999997777788888888    8899999999864 588999999999999999999987777787777777    8999


Q ss_pred             cCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCC
Q 042887          518 QGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK  577 (628)
Q Consensus       518 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~  577 (628)
                      ++|++++..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++++..|..
T Consensus       185 s~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          185 SLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             CSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             CCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            999999766655544 58999999999999887778899999999999999999887754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=2.9e-25  Score=219.00  Aligned_cols=200  Identities=24%  Similarity=0.238  Sum_probs=134.3

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG  442 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (628)
                      +++.++++++.++. +|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+.  ..+++|++|+++
T Consensus        11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G           11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence            56777777777763 333332  4667777777777766666677777777777777777654332  566777777777


Q ss_pred             CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887          443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF  522 (628)
Q Consensus       443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  522 (628)
                      +|+++ .+|..+..+++|    +.|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+.|+|++|++
T Consensus        86 ~N~l~-~l~~~~~~l~~L----~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQTLPAL----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             SSCCS-SCCCCTTTCTTC----CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCcCC-cCchhhccCCCC----CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            77776 556666666666    6677777777766666677777777777777777766666666777777777777777


Q ss_pred             eeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCccc
Q 042887          523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGE  573 (628)
Q Consensus       523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  573 (628)
                      ++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.+++++|++...
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            7555555666777777777777776 4555555666777777777776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=4.3e-25  Score=216.01  Aligned_cols=206  Identities=22%  Similarity=0.245  Sum_probs=160.1

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG  442 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (628)
                      ..+.++++++.++. +|..+.  ++++.|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            34566666666663 343332  467788888888877666678888888888888888886666667778888888888


Q ss_pred             CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887          443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF  522 (628)
Q Consensus       443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  522 (628)
                      +|++++..+..+..+++|    +.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus        94 ~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNL----AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSC----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCCcCCHhHcccccCC----CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence            888887666677777777    7888888888877777788888888888888888876666678888888888888888


Q ss_pred             eeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887          523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  575 (628)
                      ++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++....+
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            87666678888888888888888887777778888888888888888876654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.9e-25  Score=219.53  Aligned_cols=223  Identities=21%  Similarity=0.234  Sum_probs=192.9

Q ss_pred             EEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccc
Q 042887          367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNL  446 (628)
Q Consensus       367 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  446 (628)
                      ++..+..+. .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            344444444 3444443  5799999999999988888999999999999999999988888999999999999999999


Q ss_pred             ccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCccc-CCccccCCCCCCeEECcCceeeee
Q 042887          447 QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNE-IPVTLSACTTLEYLHLQGNSFSGS  525 (628)
Q Consensus       447 ~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~  525 (628)
                      ++..+..+.++++|    +.|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++.
T Consensus        89 ~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           89 QSLALGAFSGLSSL----QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CEECTTTTTTCTTC----CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CccChhhhcCCccc----cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            98888899999999    8999999999987777899999999999999999874 589999999999999999999988


Q ss_pred             cCccccCCCCCC----EEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCC-CCCCCCCcccccCCCCCccc
Q 042887          526 LPLSLKTLKSIK----ELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK-GVFGNRTGIHLIGNERLCGG  597 (628)
Q Consensus       526 ~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~  597 (628)
                      .+..+..+++|+    .|++++|++++..+..+.. .+|++|++++|++++.++.. ..+++++.+++++|++.|..
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            888887777777    9999999999776666654 48999999999999776643 56789999999999999863

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1e-24  Score=213.25  Aligned_cols=204  Identities=26%  Similarity=0.254  Sum_probs=182.7

Q ss_pred             CcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccce
Q 042887          387 NINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL  466 (628)
Q Consensus       387 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~  466 (628)
                      +.+.++++++.++. +|..+.  +++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++|    +.
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L----~~   89 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL----ET   89 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC----CE
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC----CE
Confidence            56789999999984 565554  689999999999998877899999999999999999997777777889888    89


Q ss_pred             EEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcc
Q 042887          467 LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL  546 (628)
Q Consensus       467 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  546 (628)
                      |++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence            99999999987778889999999999999999988888899999999999999999977777799999999999999999


Q ss_pred             cccCchhhhcccCCCeEeccCCcCcccCCC-CCCCCCCCcccccCCCCCccc
Q 042887          547 SGQIPKYLENLLFLAYLNLSYNHFEGEVPR-KGVFGNRTGIHLIGNERLCGG  597 (628)
Q Consensus       547 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~  597 (628)
                      ++..+..|..+++|++|++++|++++..+. ...+++++.+++.+||+.|..
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            988888899999999999999999976554 355788999999999999863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=6.8e-24  Score=209.20  Aligned_cols=204  Identities=20%  Similarity=0.191  Sum_probs=179.4

Q ss_pred             ccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCC
Q 042887          333 LTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL  412 (628)
Q Consensus       333 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  412 (628)
                      +.++++++.++++++.++.+...    +..+++.|++++|.+++..+..+..+++|+.|++++|.+++..+.  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~----~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSC----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCCcCCCC----CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            55678899999999998876432    234899999999999998889999999999999999999865443  788999


Q ss_pred             CeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEee
Q 042887          413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFD  492 (628)
Q Consensus       413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  492 (628)
                      ++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|    +.|++++|++++..+..|..+++|++|+
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL----QELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC----CEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC----CEEECCCCCCCccChhhcccccCCCEEE
Confidence            99999999998 677888999999999999999998878889999888    8999999999987777889999999999


Q ss_pred             CcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccc
Q 042887          493 LSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSG  548 (628)
Q Consensus       493 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  548 (628)
                      |++|+++...+..|..+++|+.|+|++|+++ .+|..+...++|+.|+|++|++..
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            9999999777777888999999999999998 678888888899999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=3.5e-24  Score=209.64  Aligned_cols=200  Identities=27%  Similarity=0.242  Sum_probs=162.9

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG  442 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (628)
                      +++.|++++|.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            566777777766532  3577888888888888888753  467888888899998888887777778888889999998


Q ss_pred             CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887          443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF  522 (628)
Q Consensus       443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  522 (628)
                      +|++++..+..+..+++|    +.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus       118 ~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNL----TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTC----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCCccCHHHhccCCCC----CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            888887777778888888    8888999988877777788888999999999998877777788888999999999999


Q ss_pred             eeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCC
Q 042887          523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK  577 (628)
Q Consensus       523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~  577 (628)
                      ++..+..+..+++|+.|++++|++.+.       ++.|+.++++.|.++|.+|..
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            877777788889999999999988754       346788888899999888753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=2.8e-25  Score=227.09  Aligned_cols=209  Identities=17%  Similarity=0.238  Sum_probs=143.8

Q ss_pred             EEEccCCccccccchhhhCCCCCCEEecccCcCccccc----ccccCCC-CCCEeecccccCcccCCcCccCC-----CC
Q 042887          166 MIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP----DSLCQLR-SLNYLSISENNFSCKLPLSIWNI-----SS  235 (628)
Q Consensus       166 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~N~i~~~~p~~~~~l-----~~  235 (628)
                      ..+++.|++++.+|..+...++|++|||++|.+++..+    +.|..++ +|++|+|++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788999998888877777779999999999987766    7788888 89999999999987777777665     88


Q ss_pred             CCEEEeecccCcccCChhhhh---CC-CCCcEEecccCccccccccccc----C-CCCCCEEEcccccceeecccc----
Q 042887          236 LEIISLHSNRFEGSLPLNIGF---NI-PNVNFLSVGQNNFTGSLPHSFS----N-ASNLQVLDVYKNHFSGQVKID----  302 (628)
Q Consensus       236 L~~L~L~~n~l~~~~~~~~~~---~l-~~L~~L~L~~N~l~~~~~~~~~----~-l~~L~~L~L~~N~i~~~~~~~----  302 (628)
                      |++|+|++|.+++..+..+..   .+ ++|++|++++|++++..+..+.    . .++|++|++++|++++.....    
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999988555544332   23 7888888888888876655443    3 358888888888887544333    


Q ss_pred             cccCC-CCCEEEccCCcCCCcCCCCccccccccCC-CCCceeecccCCcccccchHHH----hccccccEEEccCCccee
Q 042887          303 FNRLS-NLSRLFLSKNNLGTESTSDLDFLTLLTNC-SQMEMLYLNTNKFGGVFLRSIA----NLSAKITVIGMGDNQISG  376 (628)
Q Consensus       303 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~l~~  376 (628)
                      +...+ +|++|++++|+++.....  .....+..+ ++|+.|++++|.++......++    ....+|+.|++++|.+++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            33444 788888888877653322  122234444 3777777777777664433222    222245555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=1.2e-25  Score=232.28  Aligned_cols=251  Identities=19%  Similarity=0.246  Sum_probs=142.8

Q ss_pred             ccccccCCCCCCEEEcccccceeeccc----ccccCCCCCEEEccCCcCCCcCCCCc----cccccccCCCCCceeeccc
Q 042887          275 LPHSFSNASNLQVLDVYKNHFSGQVKI----DFNRLSNLSRLFLSKNNLGTESTSDL----DFLTLLTNCSQMEMLYLNT  346 (628)
Q Consensus       275 ~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~  346 (628)
                      ++..+..+++|++|++++|+++...+.    .+..+++|++|++++|.+..+.....    .....+..+++|+.|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            344555566666666666666544332    24456666666666654432211000    0111223444444444444


Q ss_pred             CCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCC----C---------CCCC
Q 042887          347 NKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGE----L---------KNLQ  413 (628)
Q Consensus       347 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----l---------~~L~  413 (628)
                      |.++.....                     .+|..+..+++|+.|++++|.+++..+..+..    +         ++|+
T Consensus       104 n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~  162 (386)
T 2ca6_A          104 NAFGPTAQE---------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR  162 (386)
T ss_dssp             CCCCTTTHH---------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             CcCCHHHHH---------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence            444332211                     23455677778888888888776443333332    2         6777


Q ss_pred             eEecccCccc-cccC---ccccCCCCCCeEecCCccccc-----ccCCcccCCcchhcccceEEcCCCcCc----cccch
Q 042887          414 GLALVRNSLR-GTIP---DTLGNLTLLNRLFLGFNNLQG-----NVPSSLGNCQNLMTLSRLLDLSGNLLG----GSIPL  480 (628)
Q Consensus       414 ~L~L~~n~l~-~~~~---~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~l~~~L~Ls~N~l~----~~~~~  480 (628)
                      +|++++|+++ +..+   ..+..+++|++|++++|+++.     ..+..+..+++|    +.|+|++|.++    ..+|.
T Consensus       163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L----~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL----KVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC----CEEECCSSCCHHHHHHHHHH
T ss_pred             EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc----cEEECcCCCCCcHHHHHHHH
Confidence            7777777776 2233   345566777777777777762     233355556666    66777777764    34555


Q ss_pred             hhhccCCCCEeeCcCCcCccc----CCcccc--CCCCCCeEECcCceeee----ecCccc-cCCCCCCEEECCCCccccc
Q 042887          481 EVGNLRNLAEFDLSENHFSNE----IPVTLS--ACTTLEYLHLQGNSFSG----SLPLSL-KTLKSIKELDLSRNNLSGQ  549 (628)
Q Consensus       481 ~~~~l~~L~~L~Ls~N~l~~~----~~~~~~--~l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~  549 (628)
                      .+..+++|++|+|++|.+++.    ++..+.  .+++|++|+|++|.+++    .+|..+ .++++|++|++++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            666667777777777776644    334442  26667777777777665    355555 4466777777777777655


Q ss_pred             C
Q 042887          550 I  550 (628)
Q Consensus       550 ~  550 (628)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            5

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=5.6e-24  Score=212.54  Aligned_cols=225  Identities=17%  Similarity=0.176  Sum_probs=153.7

Q ss_pred             CCceeecccCCcccccchHHHhc--cccccEEEccCCcceeeCchhh--hccCCcCeeeeccccccccCC----cCCCCC
Q 042887          338 QMEMLYLNTNKFGGVFLRSIANL--SAKITVIGMGDNQISGTIPSEI--KNLVNINAFGVEYNQLTGTIP----HAIGEL  409 (628)
Q Consensus       338 ~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~~~~l  409 (628)
                      .++.+.+..+.++......+...  ..+++.|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            35555555555543322221111  1257888888888877777776  778888888888888876444    334567


Q ss_pred             CCCCeEecccCccccccCccccCCCCCCeEecCCcccccc---c-CCcccCCcchhcccceEEcCCCcCccccch----h
Q 042887          410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN---V-PSSLGNCQNLMTLSRLLDLSGNLLGGSIPL----E  481 (628)
Q Consensus       410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~----~  481 (628)
                      ++|++|++++|++.+..+..|..+++|++|++++|++.+.   . +..+..+++|    ++|++++|+++. ++.    .
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L----~~L~Ls~N~l~~-l~~~~~~l  219 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI----QNLALRNTGMET-PTGVCAAL  219 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC----CSCBCCSSCCCC-HHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC----CEEECCCCCCCc-hHHHHHHH
Confidence            7888888888888877777788888888888888876542   1 2233566666    777888888863 222    2


Q ss_pred             hhccCCCCEeeCcCCcCcccCCccccCC---CCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhccc
Q 042887          482 VGNLRNLAEFDLSENHFSNEIPVTLSAC---TTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL  558 (628)
Q Consensus       482 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  558 (628)
                      ++.+++|++|+|++|++++..|..+..+   ++|++|+|++|+++ .+|..+.  ++|++|+|++|+|++. |. +..++
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~  294 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELP  294 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCC
Confidence            4667888888888888877666666655   58888888888887 5566553  6788888888888754 32 56777


Q ss_pred             CCCeEeccCCcCcc
Q 042887          559 FLAYLNLSYNHFEG  572 (628)
Q Consensus       559 ~L~~L~ls~N~l~~  572 (628)
                      +|+.|++++|+|+.
T Consensus       295 ~L~~L~L~~N~l~~  308 (310)
T 4glp_A          295 EVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSCEECSSTTTSC
T ss_pred             CccEEECcCCCCCC
Confidence            88888888887753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=7.6e-25  Score=223.84  Aligned_cols=265  Identities=18%  Similarity=0.227  Sum_probs=160.7

Q ss_pred             EEecccCcCcccccccccCCCCCCEeecccccCcccCC----cCccCCC-CCCEEEeecccCcccCChhhhhC----CCC
Q 042887          190 AIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLP----LSIWNIS-SLEIISLHSNRFEGSLPLNIGFN----IPN  260 (628)
Q Consensus       190 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~----l~~  260 (628)
                      .+++++|.+++.+|..+...++|++|+|++|.+++..+    ..+..++ +|++|+|++|.+++..+..+...    .++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788999998888877777779999999999987666    6778888 89999999999985545444431    288


Q ss_pred             CcEEecccCccccccccccc----CC-CCCCEEEcccccceeeccccccc-----CCCCCEEEccCCcCCCcCCCCcccc
Q 042887          261 VNFLSVGQNNFTGSLPHSFS----NA-SNLQVLDVYKNHFSGQVKIDFNR-----LSNLSRLFLSKNNLGTESTSDLDFL  330 (628)
Q Consensus       261 L~~L~L~~N~l~~~~~~~~~----~l-~~L~~L~L~~N~i~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~  330 (628)
                      |++|+|++|++++..+..+.    .+ ++|++|++++|++++..+..+..     .++|++|++++|.++.....  ...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~  159 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD--ELI  159 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH--HHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH--HHH
Confidence            88888888888876665443    34 78888888888887666655433     25788888888877643221  122


Q ss_pred             ccccCCC-CCceeecccCCcccccchHHHhc----cccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcC
Q 042887          331 TLLTNCS-QMEMLYLNTNKFGGVFLRSIANL----SAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHA  405 (628)
Q Consensus       331 ~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  405 (628)
                      ..+...+ +|+.|++++|.+++..+..+...    +.+|+.|++++|.+.+.....                    ++..
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~--------------------l~~~  219 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE--------------------LAYI  219 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH--------------------HHHH
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH--------------------HHHH
Confidence            2333343 67777777777666555444322    124455555555444321110                    1222


Q ss_pred             CCC-CCCCCeEecccCccccccC----ccccCCCCCCeEecCCcccccc-------cCCcccCCcchhcccceEEcCCCc
Q 042887          406 IGE-LKNLQGLALVRNSLRGTIP----DTLGNLTLLNRLFLGFNNLQGN-------VPSSLGNCQNLMTLSRLLDLSGNL  473 (628)
Q Consensus       406 ~~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~l~~~L~Ls~N~  473 (628)
                      +.. .++|++|++++|.+++..+    ..+..+++|+.|++++|.+.+.       .+..+..+++|    +.||+++|.
T Consensus       220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L----~~LdL~~N~  295 (362)
T 3goz_A          220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI----ILVDKNGKE  295 (362)
T ss_dssp             HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE----EEECTTSCB
T ss_pred             HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce----EEEecCCCc
Confidence            222 2355555555555553322    2234445556666655553221       22234444444    666777777


Q ss_pred             Cccccch
Q 042887          474 LGGSIPL  480 (628)
Q Consensus       474 l~~~~~~  480 (628)
                      +....+.
T Consensus       296 l~~~~~~  302 (362)
T 3goz_A          296 IHPSHSI  302 (362)
T ss_dssp             CCGGGCH
T ss_pred             CCCcchH
Confidence            6654443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=1.3e-23  Score=201.58  Aligned_cols=199  Identities=19%  Similarity=0.180  Sum_probs=109.2

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeecccc-ccccCCcCCCCCCCCCeEeccc-CccccccCccccCCCCCCeEe
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ-LTGTIPHAIGELKNLQGLALVR-NSLRGTIPDTLGNLTLLNRLF  440 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  440 (628)
                      +++.|++++|++++..+..|.++++|+.|++++|+ +++..+..|..+++|++|++++ |++++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45566666666665555566666666666666665 5555555566666666666665 666655555566666666666


Q ss_pred             cCCcccccccCCcccCCcchhcccceEEcCCC-cCccccchhhhccCCCC-EeeCcCCcCcccCCccccCCCCCCeEECc
Q 042887          441 LGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN-LLGGSIPLEVGNLRNLA-EFDLSENHFSNEIPVTLSACTTLEYLHLQ  518 (628)
Q Consensus       441 L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  518 (628)
                      +++|++++ +|. +..+++|..+ +.|++++| ++++..+..|.++++|+ +|++++|+++...+..+.. ++|+.|+++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L-~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIF-FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSE-EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCcc-ccc-cccccccccc-cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            66666653 333 5555555221 25566666 55544444555555555 5555555555333333333 555555555


Q ss_pred             Cce-eeeecCccccCC-CCCCEEECCCCcccccCchhhhcccCCCeEeccCC
Q 042887          519 GNS-FSGSLPLSLKTL-KSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN  568 (628)
Q Consensus       519 ~N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  568 (628)
                      +|+ +++..+..|..+ ++|+.|++++|++++..+.   .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            553 554444455555 5555555555555533222   3444555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=4.6e-23  Score=199.22  Aligned_cols=178  Identities=20%  Similarity=0.208  Sum_probs=86.9

Q ss_pred             ccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCC
Q 042887          364 ITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGF  443 (628)
Q Consensus       364 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  443 (628)
                      .+.++++++.++. +|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            4455555555542 232222  3455555555555544444555555555555555555544444455555555555555


Q ss_pred             cccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceee
Q 042887          444 NNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFS  523 (628)
Q Consensus       444 N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  523 (628)
                      |++++..+..+..+++|    +.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+++
T Consensus        93 n~l~~~~~~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQL----DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             SCCCCCCTTTTTTCTTC----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcccccChhHhcccCCC----CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            55554444444444444    44455555554443334444555555555555554444434444455555555555554


Q ss_pred             eecCccccCCCCCCEEECCCCcccc
Q 042887          524 GSLPLSLKTLKSIKELDLSRNNLSG  548 (628)
Q Consensus       524 ~~~~~~~~~l~~L~~L~Ls~N~l~~  548 (628)
                      +..+..+..+++|+.|++++|+++.
T Consensus       169 ~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          169 SVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             ccCHHHHhCCCCCCEEEeeCCceeC
Confidence            4444444444555555555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=9.8e-24  Score=202.42  Aligned_cols=198  Identities=13%  Similarity=0.121  Sum_probs=175.0

Q ss_pred             CCcCeeeeccccccccCCcCCCCCCCCCeEecccCc-cccccCccccCCCCCCeEecCC-cccccccCCcccCCcchhcc
Q 042887          386 VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNS-LRGTIPDTLGNLTLLNRLFLGF-NNLQGNVPSSLGNCQNLMTL  463 (628)
Q Consensus       386 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~l  463 (628)
                      ++++.|++++|++++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|   
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L---  107 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL---  107 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC---
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC---
Confidence            389999999999998888899999999999999997 9877777999999999999998 99998888899999998   


Q ss_pred             cceEEcCCCcCccccchhhhccCCCC---EeeCcCC-cCcccCCccccCCCCCC-eEECcCceeeeecCccccCCCCCCE
Q 042887          464 SRLLDLSGNLLGGSIPLEVGNLRNLA---EFDLSEN-HFSNEIPVTLSACTTLE-YLHLQGNSFSGSLPLSLKTLKSIKE  538 (628)
Q Consensus       464 ~~~L~Ls~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~  538 (628)
                       +.|++++|++++ +|. +..+++|+   +|++++| ++++..+..|.++++|+ +|++++|+++...+..+.. ++|+.
T Consensus       108 -~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~  183 (239)
T 2xwt_C          108 -KFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDA  183 (239)
T ss_dssp             -CEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEE
T ss_pred             -CEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCE
Confidence             899999999996 555 88889998   9999999 99988788899999999 9999999999555555655 89999


Q ss_pred             EECCCCc-ccccCchhhhcc-cCCCeEeccCCcCcccCCCCCCCCCCCcccccCCC
Q 042887          539 LDLSRNN-LSGQIPKYLENL-LFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNE  592 (628)
Q Consensus       539 L~Ls~N~-l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~  592 (628)
                      |++++|+ ++...+..|..+ ++|+.|++++|++++..+.  .+++++.+++.++.
T Consensus       184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            9999995 998888899999 9999999999999865443  67888888887664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.1e-23  Score=202.04  Aligned_cols=201  Identities=23%  Similarity=0.239  Sum_probs=177.0

Q ss_pred             EEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcc
Q 042887          366 VIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNN  445 (628)
Q Consensus       366 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  445 (628)
                      .+.+..+.+.+.  .....+++|+.|++++|.+...  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|+
T Consensus        23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~   96 (272)
T 3rfs_A           23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQ   96 (272)
T ss_dssp             HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSC
T ss_pred             HHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCc
Confidence            344445544433  3467889999999999998743  4588899999999999999853  478999999999999999


Q ss_pred             cccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeee
Q 042887          446 LQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGS  525 (628)
Q Consensus       446 l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  525 (628)
                      +++..+..+..+++|    +.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus        97 l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A           97 LQSLPNGVFDKLTNL----KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             CCCCCTTTTTTCTTC----CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cCccChhHhcCCcCC----CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            998888888999998    8999999999988888899999999999999999988888889999999999999999988


Q ss_pred             cCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC
Q 042887          526 LPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR  576 (628)
Q Consensus       526 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~  576 (628)
                      .+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            888889999999999999999998888899999999999999999987763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=9.5e-23  Score=196.99  Aligned_cols=183  Identities=22%  Similarity=0.217  Sum_probs=164.6

Q ss_pred             CCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccc
Q 042887          386 VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSR  465 (628)
Q Consensus       386 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~  465 (628)
                      ...+.++++++.+. .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|++++..+..+.++++|    +
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~   86 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL----G   86 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----C
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC----C
Confidence            45678999999998 4565554  689999999999998888899999999999999999998888889999888    8


Q ss_pred             eEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCc
Q 042887          466 LLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNN  545 (628)
Q Consensus       466 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  545 (628)
                      .|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus        87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence            99999999998888889999999999999999997777778999999999999999997777789999999999999999


Q ss_pred             ccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887          546 LSGQIPKYLENLLFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       546 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  575 (628)
                      +++..+..|..+++|+.|++++|++++...
T Consensus       167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            998888899999999999999999988744

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.5e-23  Score=207.84  Aligned_cols=223  Identities=21%  Similarity=0.186  Sum_probs=182.7

Q ss_pred             cccEEEccCCcceeeCch---hhhccCCcCeeeeccccccccCCcCC--CCCCCCCeEecccCccccccC----ccccCC
Q 042887          363 KITVIGMGDNQISGTIPS---EIKNLVNINAFGVEYNQLTGTIPHAI--GELKNLQGLALVRNSLRGTIP----DTLGNL  433 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l  433 (628)
                      .++.+.+.++.++...-.   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            567788888776532111   12345779999999999999988888  899999999999999997555    345679


Q ss_pred             CCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc--c--chhhhccCCCCEeeCcCCcCcccCCc----c
Q 042887          434 TLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS--I--PLEVGNLRNLAEFDLSENHFSNEIPV----T  505 (628)
Q Consensus       434 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~--~--~~~~~~l~~L~~L~Ls~N~l~~~~~~----~  505 (628)
                      ++|++|++++|++++..+..+..+++|    ++|++++|++.+.  .  +..+..+++|++|++++|+++. .+.    .
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l  219 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPAL----TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL  219 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTC----CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCC----CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence            999999999999998888999999998    8999999998652  2  2234789999999999999973 222    3


Q ss_pred             ccCCCCCCeEECcCceeeeecCccccCC---CCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCC
Q 042887          506 LSACTTLEYLHLQGNSFSGSLPLSLKTL---KSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN  582 (628)
Q Consensus       506 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  582 (628)
                      +..+++|++|+|++|++++..|..+..+   ++|++|+|++|+|+ .+|..+.  ++|++|++++|++++. |....+++
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~  295 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPE  295 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCC
Confidence            5788999999999999998878777776   69999999999999 5666654  7999999999999974 44566788


Q ss_pred             CCcccccCCCCC
Q 042887          583 RTGIHLIGNERL  594 (628)
Q Consensus       583 l~~~~~~~n~~~  594 (628)
                      ++.+++++|+..
T Consensus       296 L~~L~L~~N~l~  307 (310)
T 4glp_A          296 VDNLTLDGNPFL  307 (310)
T ss_dssp             CSCEECSSTTTS
T ss_pred             ccEEECcCCCCC
Confidence            999999999754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=4.7e-25  Score=227.78  Aligned_cols=44  Identities=14%  Similarity=0.216  Sum_probs=26.4

Q ss_pred             ccchhhhCCCCCCEEecccCcCcccccc----cccCCCCCCEeecccc
Q 042887          177 KFPDFIANFSALEAIDISANMLGGRIPD----SLCQLRSLNYLSISEN  220 (628)
Q Consensus       177 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N  220 (628)
                      .++..+..+++|++|+|++|.++...+.    .+..+++|++|+|++|
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~   70 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI   70 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc
Confidence            3445566666677777777766654332    3556666666666664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.4e-23  Score=210.83  Aligned_cols=251  Identities=17%  Similarity=0.189  Sum_probs=177.4

Q ss_pred             CCCEEEcccccceeecccccccC--CCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhcc
Q 042887          284 NLQVLDVYKNHFSGQVKIDFNRL--SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLS  361 (628)
Q Consensus       284 ~L~~L~L~~N~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~  361 (628)
                      .++.+++++|.+.   +..+..+  ++++.|++++|.+.+....       +..+++|+.|++++|.+            
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-------~~~~~~L~~L~L~~~~l------------  105 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-------HFSPFRVQHMDLSNSVI------------  105 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-------CCCCBCCCEEECTTCEE------------
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-------hccCCCCCEEEccCCCc------------
Confidence            3666777766655   3445555  6777777777766553221       22334455555554443            


Q ss_pred             ccccEEEccCCcceee-CchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccC-ccccc-cCccccCCCCCCe
Q 042887          362 AKITVIGMGDNQISGT-IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRN-SLRGT-IPDTLGNLTLLNR  438 (628)
Q Consensus       362 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~  438 (628)
                                   .+. ++..+..+++|++|++++|.+.+..+..++.+++|++|++++| .+++. .+..+..+++|++
T Consensus       106 -------------~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B          106 -------------EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             -------------CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             -------------CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence                         322 3445667777888888888777666777777888888888888 56652 5666777888888


Q ss_pred             EecCCc-ccccc-cCCcccCCc-chhcccceEEcCCC--cCc-cccchhhhccCCCCEeeCcCCc-CcccCCccccCCCC
Q 042887          439 LFLGFN-NLQGN-VPSSLGNCQ-NLMTLSRLLDLSGN--LLG-GSIPLEVGNLRNLAEFDLSENH-FSNEIPVTLSACTT  511 (628)
Q Consensus       439 L~L~~N-~l~~~-~~~~~~~l~-~L~~l~~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~  511 (628)
                      |++++| .+++. .+..+..++ +|    +.|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L----~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~  248 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETI----TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  248 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTC----CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCC----CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence            888888 88754 455667777 77    88889988  454 3466778889999999999999 77777888899999


Q ss_pred             CCeEECcCce-eeeecCccccCCCCCCEEECCCCcccccCchhhhcc-cCCCeEeccCCcCcccCCCC
Q 042887          512 LEYLHLQGNS-FSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL-LFLAYLNLSYNHFEGEVPRK  577 (628)
Q Consensus       512 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p~~  577 (628)
                      |++|++++|. +.......+..+++|+.|++++| ++.   +.+..+ ..+..|++++|++++..|..
T Consensus       249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            9999999995 33222236788999999999999 443   334444 34778889999999987753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.3e-23  Score=212.84  Aligned_cols=256  Identities=18%  Similarity=0.247  Sum_probs=168.3

Q ss_pred             cccEEEccCCccccccchhhhCC--CCCCEEecccCcCcccccccccCCCCCCEeecccccCccc-CCcCccCCCCCCEE
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANF--SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCK-LPLSIWNISSLEII  239 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~p~~~~~l~~L~~L  239 (628)
                      .++.+|+++|.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3678889888876   5667776  8888999998888866554 55788888888888888755 67777888888888


Q ss_pred             EeecccCcccCChhhhhCCCCCcEEecccC-ccccc-ccccccCCCCCCEEEcccc-cceee-cccccccCC-CCCEEEc
Q 042887          240 SLHSNRFEGSLPLNIGFNIPNVNFLSVGQN-NFTGS-LPHSFSNASNLQVLDVYKN-HFSGQ-VKIDFNRLS-NLSRLFL  314 (628)
Q Consensus       240 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~-~L~~L~L  314 (628)
                      ++++|.+++..+..+.. +++|++|++++| .+++. .+..+.++++|++|++++| .+++. .+..+..++ +|++|++
T Consensus       124 ~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             eCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            88888887666665553 788888888888 56652 5556777788888888888 77653 345566777 7777777


Q ss_pred             cCCc--CCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeee
Q 042887          315 SKNN--LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFG  392 (628)
Q Consensus       315 ~~n~--l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  392 (628)
                      ++|.  ++..     ..+..+..+++|+.|++++|..                        +++..+..+..+++|+.|+
T Consensus       203 ~~~~~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~------------------------l~~~~~~~l~~l~~L~~L~  253 (336)
T 2ast_B          203 SGYRKNLQKS-----DLSTLVRRCPNLVHLDLSDSVM------------------------LKNDCFQEFFQLNYLQHLS  253 (336)
T ss_dssp             CSCGGGSCHH-----HHHHHHHHCTTCSEEECTTCTT------------------------CCGGGGGGGGGCTTCCEEE
T ss_pred             CCCcccCCHH-----HHHHHHhhCCCCCEEeCCCCCc------------------------CCHHHHHHHhCCCCCCEee
Confidence            7773  3210     1222333444455555444441                        3334445566667777777


Q ss_pred             ecccc-ccccCCcCCCCCCCCCeEecccCccccccCccccCC-CCCCeEecCCcccccccCCcccC
Q 042887          393 VEYNQ-LTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNL-TLLNRLFLGFNNLQGNVPSSLGN  456 (628)
Q Consensus       393 l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~  456 (628)
                      +++|. +.......+..+++|+.|++++| ++.   ..+..+ .++..|++++|++++..|..++.
T Consensus       254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            77773 32222224666777788888777 332   223333 23566667888887777766654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=3.2e-22  Score=199.22  Aligned_cols=190  Identities=24%  Similarity=0.334  Sum_probs=150.4

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG  442 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (628)
                      +++.|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence            677777777777643 3 57788888888888888875544  88888888999988888753  368888889999999


Q ss_pred             CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887          443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF  522 (628)
Q Consensus       443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  522 (628)
                      +|++++..  .+..+++|    +.|++++|++++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++
T Consensus       116 ~n~l~~~~--~l~~l~~L----~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          116 STQITDVT--PLAGLSNL----QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             TSCCCCCG--GGTTCTTC----CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             CCCCCCch--hhcCCCCC----CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            88887532  27777777    888899998885443  7888899999999998885433  78888999999999998


Q ss_pred             eeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcc
Q 042887          523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG  572 (628)
Q Consensus       523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  572 (628)
                      ++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            85443  7888899999999999986553  7888899999999998876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=5.4e-22  Score=201.58  Aligned_cols=152  Identities=14%  Similarity=0.135  Sum_probs=81.6

Q ss_pred             cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccC-CcCccCCCCCCE-EEee
Q 042887          165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKL-PLSIWNISSLEI-ISLH  242 (628)
Q Consensus       165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~-p~~~~~l~~L~~-L~L~  242 (628)
                      ++++-++++++ .+|..+  .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+ +.+|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666666666 344433  246666666666666555556666666666666666654333 345566665543 4444


Q ss_pred             cccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccc-ccceeecccccccCC-CCCEEEccCCcCC
Q 042887          243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYK-NHFSGQVKIDFNRLS-NLSRLFLSKNNLG  320 (628)
Q Consensus       243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~-~L~~L~L~~n~l~  320 (628)
                      .|+++ .++...+..+++|++|++++|+++...+..+....++..|++.+ +++..+.+..|..+. .++.|++++|+++
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            55665 44444444555566666655555544444444445555555533 344444444444432 3444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=1.4e-21  Score=198.61  Aligned_cols=76  Identities=21%  Similarity=0.160  Sum_probs=32.4

Q ss_pred             ceEEcCC-CcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCC
Q 042887          465 RLLDLSG-NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSR  543 (628)
Q Consensus       465 ~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  543 (628)
                      +.+++++ |.++...+..|.++++|++||+++|+|+...+..+   .+|+.|.+.++.-...+| .+..+++|+.+++++
T Consensus       180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence            3444442 34443333345555555555555555553332222   233333332222112333 244555555555544


Q ss_pred             C
Q 042887          544 N  544 (628)
Q Consensus       544 N  544 (628)
                      +
T Consensus       256 ~  256 (350)
T 4ay9_X          256 P  256 (350)
T ss_dssp             H
T ss_pred             C
Confidence            3

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=7.7e-22  Score=196.47  Aligned_cols=206  Identities=27%  Similarity=0.340  Sum_probs=173.7

Q ss_pred             ccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccccc
Q 042887          369 MGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG  448 (628)
Q Consensus       369 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  448 (628)
                      ++.+.+.+..  ....+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|++++
T Consensus        26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC
T ss_pred             hCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC
Confidence            4444444332  35678899999999999985 34 68899999999999999996544  9999999999999999985


Q ss_pred             ccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCc
Q 042887          449 NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPL  528 (628)
Q Consensus       449 ~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  528 (628)
                      .  ..+..+++|    +.|++++|++++. + .+..+++|++|++++|++++..+  +..+++|++|++++|++++..+ 
T Consensus       100 ~--~~~~~l~~L----~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-  168 (308)
T 1h6u_A          100 V--SAIAGLQSI----KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-  168 (308)
T ss_dssp             C--GGGTTCTTC----CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             c--hhhcCCCCC----CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-
Confidence            3  367778888    8999999999864 3 38999999999999999986544  8899999999999999996443 


Q ss_pred             cccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCc
Q 042887          529 SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLC  595 (628)
Q Consensus       529 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c  595 (628)
                       +..+++|+.|++++|++++..+  +..+++|++|++++|++++..| ...+++++.+++++|+..+
T Consensus       169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence             8999999999999999996554  8899999999999999998665 5678899999999998655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=8e-21  Score=177.85  Aligned_cols=179  Identities=21%  Similarity=0.277  Sum_probs=135.1

Q ss_pred             cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887          165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN  244 (628)
Q Consensus       165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n  244 (628)
                      +.++.+++.++. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|+++...+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            466777777764 34332  457888888888888777777888888888888888888666666788888888888888


Q ss_pred             cCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCC
Q 042887          245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTEST  324 (628)
Q Consensus       245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  324 (628)
                      .++ .+|...+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+..   
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A           87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence            887 6666665568888888888888887777778888888888888888887777778888888888888886643   


Q ss_pred             CCccccccccCCCCCceeecccCCcccccchHHHhc
Q 042887          325 SDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL  360 (628)
Q Consensus       325 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  360 (628)
                                .++.|+.|+++.|.+++..+..++.+
T Consensus       163 ----------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          163 ----------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             ----------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ----------CCCCHHHHHHHHHhCCceeeccCccc
Confidence                      34567777777777776666554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=3.9e-21  Score=181.26  Aligned_cols=151  Identities=18%  Similarity=0.204  Sum_probs=72.7

Q ss_pred             eeeeccccccccCCcCCCCCCCCCeEecccCccccccC-ccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEE
Q 042887          390 AFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLD  468 (628)
Q Consensus       390 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~  468 (628)
                      .+++++|.++. +|..+.  +.+++|++++|++++..+ ..|..+++|++|++++|+|++..+..|.++++|    +.|+
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L----~~L~   87 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV----NEIL   87 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC----CEEE
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC----CEEE
Confidence            55555555553 333332  234555555555554432 234555555555555555554444444444444    4445


Q ss_pred             cCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887          469 LSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       469 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  547 (628)
                      |++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|+++
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            5555554444444444444444444444444444444444444444444444444444444444444444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=8.4e-21  Score=177.73  Aligned_cols=173  Identities=24%  Similarity=0.218  Sum_probs=128.9

Q ss_pred             eeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEc
Q 042887          390 AFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDL  469 (628)
Q Consensus       390 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~L  469 (628)
                      .++.+++.++. +|..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|    ++|++
T Consensus        11 ~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~L   83 (208)
T 2o6s_A           11 TVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL----TYLNL   83 (208)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC----CEEEC
T ss_pred             EEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc----CEEEC
Confidence            44555555552 33322  3467777777777776666667777778888888777776666666777777    77888


Q ss_pred             CCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccccc
Q 042887          470 SGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQ  549 (628)
Q Consensus       470 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  549 (628)
                      ++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ 
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-  162 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-  162 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence            8888876666667888888888888888887666677888888888888888886666668888888888888887774 


Q ss_pred             CchhhhcccCCCeEeccCCcCcccCCC
Q 042887          550 IPKYLENLLFLAYLNLSYNHFEGEVPR  576 (628)
Q Consensus       550 ~~~~~~~l~~L~~L~ls~N~l~~~~p~  576 (628)
                            .+++|++|+++.|+++|.+|.
T Consensus       163 ------~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          163 ------TCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             ------CTTTTHHHHHHHHHCTTTBBC
T ss_pred             ------CCCCHHHHHHHHHhCCceeec
Confidence                  345788888888988888875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=5.3e-21  Score=180.36  Aligned_cols=152  Identities=20%  Similarity=0.236  Sum_probs=80.8

Q ss_pred             CeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEE
Q 042887          389 NAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLD  468 (628)
Q Consensus       389 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~  468 (628)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|    ++|+
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L----~~L~   86 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL----NSLV   86 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC----CEEE
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC----CEEE
Confidence            34555666555 2333332  455666666666655555555555566666665555555555555555555    5555


Q ss_pred             cCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887          469 LSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       469 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  547 (628)
                      |++|+|+...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus        87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            5555555444444455555555555555555444555555555555555555555444444555555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=2.1e-20  Score=176.31  Aligned_cols=153  Identities=20%  Similarity=0.323  Sum_probs=137.8

Q ss_pred             cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887          165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN  244 (628)
Q Consensus       165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n  244 (628)
                      +.+++++++++. +|..+.  ++|+.|++++|.++++.+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            578999999884 555443  68999999999999888889999999999999999999888999999999999999999


Q ss_pred             cCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887          245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT  321 (628)
Q Consensus       245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~  321 (628)
                      .++ .+|..++..+++|++|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|++|++++|.+..
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            998 7888887789999999999999998888999999999999999999998888889999999999999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=3e-20  Score=189.50  Aligned_cols=176  Identities=26%  Similarity=0.210  Sum_probs=97.5

Q ss_pred             eeeeccccccccCCcCCCCCCCCCeEecccCccccccCcccc-CCCCCCeEecCCcccccccCCcccCCcchhcccceEE
Q 042887          390 AFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLG-NLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLD  468 (628)
Q Consensus       390 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~  468 (628)
                      .+++++++++. +|..+.  +.++.|+|++|++++..+..|. .+++|++|++++|+|++..+..|.++++|    +.|+
T Consensus        22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L----~~L~   94 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL----RYLD   94 (361)
T ss_dssp             EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC----CEEE
T ss_pred             EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC----CEEE
Confidence            44455555442 333222  2355555555555555555454 55556666666665555555555555555    5556


Q ss_pred             cCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccc---cCCCCCCEEECCCCc
Q 042887          469 LSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSL---KTLKSIKELDLSRNN  545 (628)
Q Consensus       469 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~  545 (628)
                      |++|+|+...+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|   ..+++|+.|+|++|+
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            66666655545555666666666666666665555566666666666666666664333333   345666666666666


Q ss_pred             ccccCchhhhcccC--CCeEeccCCcCcc
Q 042887          546 LSGQIPKYLENLLF--LAYLNLSYNHFEG  572 (628)
Q Consensus       546 l~~~~~~~~~~l~~--L~~L~ls~N~l~~  572 (628)
                      |+...++.+..++.  ++.|++++|++..
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCccC
Confidence            66555555665554  3566666666553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=6.5e-20  Score=195.78  Aligned_cols=187  Identities=22%  Similarity=0.330  Sum_probs=85.4

Q ss_pred             CCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEec
Q 042887          338 QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLAL  417 (628)
Q Consensus       338 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  417 (628)
                      +++.|++++|.+++.... +   .++++.|++++|.++ .+|   ..+++|+.|++++|++++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~-l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDN-L---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSCCCSC-C---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCccCHh-H---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            455555555555542221 1   124555555555554 233   234455555555555543 333 332  4555555


Q ss_pred             ccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCc
Q 042887          418 VRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENH  497 (628)
Q Consensus       418 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  497 (628)
                      ++|.+++ +|.   .+++|+.|++++|+|++ +|.   .+++|    +.|+|++|++++ +|. |.  ++|++|+|++|+
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L----~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL----EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC----CEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc----CEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence            5555553 332   34455555555555543 232   22333    445555555543 333 33  455555555555


Q ss_pred             CcccCCccccCCCCC-------CeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcc
Q 042887          498 FSNEIPVTLSACTTL-------EYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL  557 (628)
Q Consensus       498 l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  557 (628)
                      |+ .+|. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus       192 L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          192 LE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             CC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            54 2333 322  34       55555555554 344444445555555555555555445444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=8.6e-20  Score=172.03  Aligned_cols=153  Identities=21%  Similarity=0.236  Sum_probs=135.3

Q ss_pred             cEEEccCCccccccchhhhCCCCCCEEecccCcCccccc-ccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887          165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP-DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS  243 (628)
Q Consensus       165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~  243 (628)
                      +.+++++|.++. +|..+  ...+++|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            589999999985 56544  3467899999999997754 5689999999999999999988888999999999999999


Q ss_pred             ccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887          244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT  321 (628)
Q Consensus       244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~  321 (628)
                      |.++ .++...+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|.+..
T Consensus        91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            9998 6777766679999999999999998889999999999999999999998888899999999999999998865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=8e-20  Score=180.19  Aligned_cols=173  Identities=29%  Similarity=0.331  Sum_probs=109.0

Q ss_pred             hhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchh
Q 042887          382 IKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLM  461 (628)
Q Consensus       382 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  461 (628)
                      +..+++|+.|++++|.+.+. + .+..+++|++|++++|++++..+  +..+++|++|++++|++++.  ..+..+++| 
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL-  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC-
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC-
Confidence            34556666666666666533 2 35566666666666666664333  66666666666666666532  225555555 


Q ss_pred             cccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEEC
Q 042887          462 TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDL  541 (628)
Q Consensus       462 ~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  541 (628)
                         +.|++++|++++.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++..+  +..+++|+.|++
T Consensus       115 ---~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L  185 (291)
T 1h6t_A          115 ---KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL  185 (291)
T ss_dssp             ---CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ---CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence               6667777766643  3566667777777777777643  456667777777777777765433  666777777777


Q ss_pred             CCCcccccCchhhhcccCCCeEeccCCcCcc
Q 042887          542 SRNNLSGQIPKYLENLLFLAYLNLSYNHFEG  572 (628)
Q Consensus       542 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  572 (628)
                      ++|.+++. + .+..+++|+.|++++|+++.
T Consensus       186 ~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          186 SKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            77777643 3 36667777777777777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=6.7e-20  Score=186.90  Aligned_cols=177  Identities=25%  Similarity=0.209  Sum_probs=152.1

Q ss_pred             CeEecccCccccccCccccCCCCCCeEecCCcccccccCCccc-CCcchhcccceEEcCCCcCccccchhhhccCCCCEe
Q 042887          413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG-NCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEF  491 (628)
Q Consensus       413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L  491 (628)
                      +.++++++.++. +|..+.  +.++.|++++|+|++..+..+. ++++|    +.|+|++|+|++..+..|.++++|++|
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L----~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNL----HSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTC----CEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhccccc----CEEECCCCcCCccChhhccCCCCCCEE
Confidence            689999999984 665543  4689999999999988888887 88888    899999999998888899999999999


Q ss_pred             eCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhh---hcccCCCeEeccCC
Q 042887          492 DLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYL---ENLLFLAYLNLSYN  568 (628)
Q Consensus       492 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~ls~N  568 (628)
                      +|++|++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|+|++|
T Consensus        94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            999999998888889999999999999999998889999999999999999999997666666   67999999999999


Q ss_pred             cCcccCCC-CCCCCC--CCcccccCCCCCcc
Q 042887          569 HFEGEVPR-KGVFGN--RTGIHLIGNERLCG  596 (628)
Q Consensus       569 ~l~~~~p~-~~~~~~--l~~~~~~~n~~~c~  596 (628)
                      +|++..+. ...++.  ++.+++.+||+.|.
T Consensus       174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            99864432 122333  36789999999985

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=2e-19  Score=170.68  Aligned_cols=153  Identities=24%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             cCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceE
Q 042887          388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLL  467 (628)
Q Consensus       388 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L  467 (628)
                      .+.++.+++.+. .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|+++...+..|..+++|    +.|
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L----~~L   93 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL----TVL   93 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----CEE
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc----CEE
Confidence            345566666655 3333332  556666666666665555556666666666666666654444444555555    555


Q ss_pred             EcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887          468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       468 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  547 (628)
                      +|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus        94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             ECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            55555555444444555555555555555555 34444555555555555555555444444555555555555555554


Q ss_pred             c
Q 042887          548 G  548 (628)
Q Consensus       548 ~  548 (628)
                      .
T Consensus       173 c  173 (229)
T 3e6j_A          173 C  173 (229)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=2.2e-19  Score=177.00  Aligned_cols=175  Identities=22%  Similarity=0.347  Sum_probs=142.3

Q ss_pred             ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887          157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL  236 (628)
Q Consensus       157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L  236 (628)
                      ....+++|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|.+++ +| .+..+++|
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L  114 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL  114 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred             chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence            345678899999999998855 3 48889999999999999986554  8999999999999999985 33 48899999


Q ss_pred             CEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccC
Q 042887          237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK  316 (628)
Q Consensus       237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  316 (628)
                      ++|++++|.++ .++ .+ ..+++|+.|++++|++++.  ..+..+++|++|++++|++++..+  +..+++|++|++++
T Consensus       115 ~~L~L~~n~i~-~~~-~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          115 KSLSLEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK  187 (291)
T ss_dssp             CEEECTTSCCC-CCG-GG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CEEECCCCcCC-CCh-hh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence            99999999998 453 33 3589999999999999865  578889999999999999987655  88889999999999


Q ss_pred             CcCCCcCCCCccccccccCCCCCceeecccCCcccc
Q 042887          317 NNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV  352 (628)
Q Consensus       317 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  352 (628)
                      |.++.+        ..+..+++|+.|++++|++...
T Consensus       188 N~i~~l--------~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          188 NHISDL--------RALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             SCCCBC--------GGGTTCTTCSEEEEEEEEEECC
T ss_pred             CcCCCC--------hhhccCCCCCEEECcCCcccCC
Confidence            988753        2366777888888888876543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=3.5e-19  Score=169.10  Aligned_cols=153  Identities=19%  Similarity=0.240  Sum_probs=124.3

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887          164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS  243 (628)
Q Consensus       164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~  243 (628)
                      .+.++.++++++ .+|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            467888888887 4454333  7888999999998888888888888999999999988866667788888889999988


Q ss_pred             ccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887          244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT  321 (628)
Q Consensus       244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~  321 (628)
                      |.++ .+|...+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|.+..
T Consensus        98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            8888 677666667888888888888888 667778888888888888888887777778888888888888887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.1e-19  Score=191.92  Aligned_cols=181  Identities=21%  Similarity=0.294  Sum_probs=126.2

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG  442 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (628)
                      +++.|++++|.+++ +|..+  .++|+.|++++|+++ .+|   ..+++|++|++++|++++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            67788888888776 44444  267788888888877 445   346778888888888875 555 544  78888888


Q ss_pred             CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887          443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF  522 (628)
Q Consensus       443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  522 (628)
                      +|++++ +|.   .+++|    +.|++++|++++ +|.   .+++|++|+|++|++++ +|. +.  ++|+.|+|++|+|
T Consensus       129 ~N~l~~-lp~---~l~~L----~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALL----EYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             SSCCSC-CCC---CCTTC----CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred             CCcCCC-CCC---cCccc----cEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence            888875 444   45555    777888888875 443   46778888888888875 454 54  7788888888887


Q ss_pred             eeecCccccCCCCC-------CEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887          523 SGSLPLSLKTLKSI-------KELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       523 ~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  575 (628)
                      + .+|. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|
T Consensus       193 ~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          193 E-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             S-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             C-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            7 5555 443  66       78888888887 456666668888888888888877655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=4.4e-19  Score=191.56  Aligned_cols=187  Identities=27%  Similarity=0.337  Sum_probs=141.1

Q ss_pred             EEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccc
Q 042887          367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNL  446 (628)
Q Consensus       367 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  446 (628)
                      +.++.+.+.+..  .+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++
T Consensus        26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             HhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence            344445544332  256777888888888887743 3 47778888888888888886544  77888888888888888


Q ss_pred             ccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeec
Q 042887          447 QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSL  526 (628)
Q Consensus       447 ~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  526 (628)
                      ++ + ..+..+++|    +.|+|++|++.+.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+.+..
T Consensus       100 ~~-l-~~l~~l~~L----~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A          100 KD-L-SSLKDLKKL----KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             CC-C-TTSTTCTTC----CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CC-C-hhhccCCCC----CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            74 2 356777777    7888888888753  4577888888888888888754  56788888888888888888655


Q ss_pred             CccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCccc
Q 042887          527 PLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGE  573 (628)
Q Consensus       527 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  573 (628)
                      |  +..+++|+.|+|++|+|++.  ..+..+++|+.|+|++|++++.
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            5  78888888888888888854  3578888888888888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=3.1e-19  Score=179.60  Aligned_cols=101  Identities=15%  Similarity=0.074  Sum_probs=51.0

Q ss_pred             CCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccc-eEEcCCCcCccccchhhhccCCC
Q 042887          410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSR-LLDLSGNLLGGSIPLEVGNLRNL  488 (628)
Q Consensus       410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~-~L~Ls~N~l~~~~~~~~~~l~~L  488 (628)
                      ++|+.+++++|+++...+..|.++++|+.+++.+| ++...+..|.+|.+|    + .+++.+ .++.+.+..|.++++|
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L----~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL----AGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC----CEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc----cEEEEEcc-cceEEchhhhhCCccC
Confidence            44444444444444444444444444555555444 444444445555444    4 445544 4444444555555555


Q ss_pred             CEeeCcCCcCcccCCccccCCCCCCeEE
Q 042887          489 AEFDLSENHFSNEIPVTLSACTTLEYLH  516 (628)
Q Consensus       489 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  516 (628)
                      +.+++++|+++...+..|.++++|+.++
T Consensus       300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          300 RYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEEeCCCccCccchhhhcCCcchhhhc
Confidence            5555555555555555555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=8.6e-20  Score=177.05  Aligned_cols=172  Identities=19%  Similarity=0.230  Sum_probs=127.2

Q ss_pred             CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      .++.++..+++++|.+++..  .+..+++|++|++++|.++. ++ .++.+++|++|+|++|.+++..+  +..+++|++
T Consensus        16 ~~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           16 PGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            34566777788888877543  57778888888888888874 44 67788888888888888875433  788888888


Q ss_pred             EEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc
Q 042887          239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN  318 (628)
Q Consensus       239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~  318 (628)
                      |++++|+++ .+|....   ++|+.|++++|++++.  ..++.+++|++|++++|++++..  .+..+++|++|++++|+
T Consensus        90 L~L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           90 LSVNRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             EECCSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSC
T ss_pred             EECCCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCc
Confidence            888888887 4554322   7888888888888854  35778888888888888887652  57778888888888888


Q ss_pred             CCCcCCCCccccccccCCCCCceeecccCCcccc
Q 042887          319 LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV  352 (628)
Q Consensus       319 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  352 (628)
                      +++.        ..+..+++|+.|++++|.+...
T Consensus       162 i~~~--------~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          162 ITNT--------GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCBC--------TTSTTCCCCCEEEEEEEEEECC
T ss_pred             Ccch--------HHhccCCCCCEEeCCCCcccCC
Confidence            8653        3456667777778777776554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=9.4e-19  Score=162.06  Aligned_cols=154  Identities=14%  Similarity=0.251  Sum_probs=119.9

Q ss_pred             CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            56678899999999988 445 5888999999999999775  3347888999999999999998777888888999999


Q ss_pred             EEeecccCcccCChhhhhCCCCCcEEecccCc-ccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887          239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNN-FTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN  317 (628)
Q Consensus       239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n  317 (628)
                      |++++|.+++..|..+. .+++|++|++++|. ++. +| .+..+++|++|++++|++++..  .+..+++|++|++++|
T Consensus       117 L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          117 LDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred             EEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence            99999988855555554 58888888888887 653 34 5788888888888888887643  5777888888888888


Q ss_pred             cCCC
Q 042887          318 NLGT  321 (628)
Q Consensus       318 ~l~~  321 (628)
                      ++..
T Consensus       192 ~i~~  195 (197)
T 4ezg_A          192 TIGG  195 (197)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            7653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=4.8e-19  Score=163.16  Aligned_cols=131  Identities=24%  Similarity=0.297  Sum_probs=88.7

Q ss_pred             CeEecccCccccccCccccCCCCCCeEecCCcccccccCC-cccCCcchhcccceEEcCCCcCccccchhhhccCCCCEe
Q 042887          413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPS-SLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEF  491 (628)
Q Consensus       413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L  491 (628)
                      +.+++++|.++ .+|..+.  .++++|++++|++++..+. .+..+++|    +.|+|++|++++..|..|.++++|++|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL----VKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC----CEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCC----CEEECCCCCCCCcCHhHcCCcccCCEE
Confidence            56777777776 4454443  2677777777777655543 36666666    667777777776666677777777777


Q ss_pred             eCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccC
Q 042887          492 DLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQI  550 (628)
Q Consensus       492 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  550 (628)
                      +|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            77777777666666667777777777777777666666777777777777777776543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=1.5e-18  Score=160.63  Aligned_cols=153  Identities=16%  Similarity=0.220  Sum_probs=75.0

Q ss_pred             hccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhc
Q 042887          383 KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMT  462 (628)
Q Consensus       383 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  462 (628)
                      ..+++|+.|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+.       
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-------  109 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLS-------  109 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCT-------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhc-------
Confidence            44455555555555555 223 3555555555555555443  222445555555555555555444444444       


Q ss_pred             ccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCce-eeeecCccccCCCCCCEEEC
Q 042887          463 LSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS-FSGSLPLSLKTLKSIKELDL  541 (628)
Q Consensus       463 l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L  541 (628)
                                           .+++|++|++++|++++..+..+..+++|++|++++|+ ++ .+| .+..+++|++|++
T Consensus       110 ---------------------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l  166 (197)
T 4ezg_A          110 ---------------------GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNI  166 (197)
T ss_dssp             ---------------------TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEEC
T ss_pred             ---------------------CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEEC
Confidence                                 44444444444444444444444445555555555554 33 222 3455555555555


Q ss_pred             CCCcccccCchhhhcccCCCeEeccCCcCc
Q 042887          542 SRNNLSGQIPKYLENLLFLAYLNLSYNHFE  571 (628)
Q Consensus       542 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  571 (628)
                      ++|++++. + .+..+++|++|++++|++.
T Consensus       167 ~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          167 QFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             CCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            55555532 2 4555555566666655553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.5e-18  Score=187.35  Aligned_cols=173  Identities=27%  Similarity=0.320  Sum_probs=110.5

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG  442 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (628)
                      .|+.|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|+
T Consensus        44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence            444455555554432 2 35666677777777776665433  6666777777777777663 22 56667777777777


Q ss_pred             CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887          443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF  522 (628)
Q Consensus       443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  522 (628)
                      +|++++.  ..+..+++|    +.|+|++|++++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|+|
T Consensus       118 ~N~l~~l--~~l~~l~~L----~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          118 HNGISDI--NGLVHLPQL----ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             TSCCCCC--GGGGGCTTC----SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             CCCCCCC--ccccCCCcc----CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            7777642  345556655    6677777777653  456677777777777777775544  66777777777777777


Q ss_pred             eeecCccccCCCCCCEEECCCCcccccCchh
Q 042887          523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKY  553 (628)
Q Consensus       523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  553 (628)
                      ++.  ..+..+++|+.|+|++|++++.....
T Consensus       188 ~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          188 SDL--RALAGLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             CBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred             CCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence            643  34677777777777777776543333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=3.9e-19  Score=172.39  Aligned_cols=168  Identities=23%  Similarity=0.319  Sum_probs=99.0

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG  442 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (628)
                      ++..+++++|.+++..  .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3455566666665443  45666677777777776663 23 46666667777777776664433  6666667777777


Q ss_pred             CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887          443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF  522 (628)
Q Consensus       443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  522 (628)
                      +|++++. |.. .. ++|    +.|++++|++++.  ..+..+++|++|++++|++++. + .+..+++|+.|++++|++
T Consensus        94 ~N~l~~l-~~~-~~-~~L----~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           94 RNRLKNL-NGI-PS-ACL----SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             SSCCSCC-TTC-CC-SSC----CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred             CCccCCc-Ccc-cc-Ccc----cEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence            6666642 221 11 444    5666666666642  2456666666666666666543 2 455566666666666666


Q ss_pred             eeecCccccCCCCCCEEECCCCccccc
Q 042887          523 SGSLPLSLKTLKSIKELDLSRNNLSGQ  549 (628)
Q Consensus       523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~  549 (628)
                      ++.  ..+..+++|+.|++++|+++..
T Consensus       163 ~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          163 TNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cch--HHhccCCCCCEEeCCCCcccCC
Confidence            543  4455666666666666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.4e-18  Score=174.77  Aligned_cols=284  Identities=13%  Similarity=0.088  Sum_probs=164.7

Q ss_pred             cCcccEEEccCCccccccchhhhC-CCCCCEEecccCcCc--ccccccccCCCCCCEeecccccCcccCCcCccC-----
Q 042887          161 LLKLEMIDVGDNQLIGKFPDFIAN-FSALEAIDISANMLG--GRIPDSLCQLRSLNYLSISENNFSCKLPLSIWN-----  232 (628)
Q Consensus       161 l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~-----  232 (628)
                      +.+++.|+++++ +.......+.. +++|+.|||++|++.  ...+   +.++.++.+.+..|.   +.+.+|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~---I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANF---VPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccc---cCHHHhccccccc
Confidence            345677777754 22222233334 667777777777766  2221   122224445554442   23445555     


Q ss_pred             ---CCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccc----eeeccccccc
Q 042887          233 ---ISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHF----SGQVKIDFNR  305 (628)
Q Consensus       233 ---l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i----~~~~~~~~~~  305 (628)
                         +++|++|+|.+ .++ .|+...|.++++|+.+++++|.++.+.+..|.++.++..+....+..    ..+...+|..
T Consensus        97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               66666666666 555 55555555566666666666655555555555555555444443211    1112223333


Q ss_pred             CCCCC-EEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHh---ccccccEEEccCCcceeeCchh
Q 042887          306 LSNLS-RLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIAN---LSAKITVIGMGDNQISGTIPSE  381 (628)
Q Consensus       306 l~~L~-~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~  381 (628)
                      +..|+ .+.+..                              ...   .+..+..   ...++..+.+.++-.. .....
T Consensus       175 ~~~L~~~i~~~~------------------------------~~~---l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~  220 (329)
T 3sb4_A          175 GEPLETTIQVGA------------------------------MGK---LEDEIMKAGLQPRDINFLTIEGKLDN-ADFKL  220 (329)
T ss_dssp             SCCCEEEEEECT------------------------------TCC---HHHHHHHTTCCGGGCSEEEEEECCCH-HHHHH
T ss_pred             ccccceeEEecC------------------------------CCc---HHHHHhhcccCccccceEEEeeeecH-HHHHH
Confidence            33333 222221                              100   0011100   0123444444433211 11111


Q ss_pred             h-hccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCC-eEecCCcccccccCCcccCCcc
Q 042887          382 I-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN-RLFLGFNNLQGNVPSSLGNCQN  459 (628)
Q Consensus       382 l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~  459 (628)
                      + ..+++|+.+++++|+++.+.+.+|.++++|+.+++.+| ++...+.+|.++++|+ .+++.. .++...+..|.+|++
T Consensus       221 l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          221 IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             HHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             HHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            2 23678888888888888777778888888888888887 7767778888888888 888887 777777888888888


Q ss_pred             hhcccceEEcCCCcCccccchhhhccCCCCEeeC
Q 042887          460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL  493 (628)
Q Consensus       460 L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  493 (628)
                      |    +.+++++|++..+.+..|.++++|+.++.
T Consensus       299 L----~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          299 L----RYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             E----EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             C----CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            8    77888888888777778888888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=6.7e-21  Score=204.62  Aligned_cols=108  Identities=27%  Similarity=0.294  Sum_probs=75.2

Q ss_pred             ceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887          465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN  544 (628)
Q Consensus       465 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  544 (628)
                      +.|+|++|++++ +|. ++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+|++ +| .+..+++|+.|+|++|
T Consensus       444 ~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          444 RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence            566777777764 444 677777777777777776 566677777777777777777774 45 6677777777777777


Q ss_pred             cccccC-chhhhcccCCCeEeccCCcCcccCCCC
Q 042887          545 NLSGQI-PKYLENLLFLAYLNLSYNHFEGEVPRK  577 (628)
Q Consensus       545 ~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~p~~  577 (628)
                      +|++.. |..+..+++|+.|++++|++++.+|..
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            777665 677777777777777777777665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=3.7e-20  Score=198.80  Aligned_cols=165  Identities=21%  Similarity=0.183  Sum_probs=132.8

Q ss_pred             eeeCchhhhccCCcCeee-eccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCc
Q 042887          375 SGTIPSEIKNLVNINAFG-VEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSS  453 (628)
Q Consensus       375 ~~~~~~~l~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  453 (628)
                      .+..|..+..+++|+.|+ ++.|.+.           +|..+.+++|.++...+      ..|+.|++++|+|++ +|. 
T Consensus       398 ~~~~~~~l~~l~~L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-  458 (567)
T 1dce_A          398 LLYEKETLQYFSTLKAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-  458 (567)
T ss_dssp             GGGHHHHHHHHHHHHHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-
T ss_pred             ccCCHHHHHHHHhcccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-
Confidence            445667777778888777 6666543           35566677777764332      258899999999985 565 


Q ss_pred             ccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeec-CccccC
Q 042887          454 LGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSL-PLSLKT  532 (628)
Q Consensus       454 ~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~  532 (628)
                      ++.+++|    +.|+|++|+|+ .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++.. |..+..
T Consensus       459 ~~~l~~L----~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~  531 (567)
T 1dce_A          459 LEQLLLV----THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS  531 (567)
T ss_dssp             GGGGTTC----CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             ccccccC----cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence            8888887    88999999998 778899999999999999999996 56 8899999999999999999776 899999


Q ss_pred             CCCCCEEECCCCcccccCch---hhhcccCCCeEec
Q 042887          533 LKSIKELDLSRNNLSGQIPK---YLENLLFLAYLNL  565 (628)
Q Consensus       533 l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l  565 (628)
                      +++|+.|+|++|++++.+|.   .+..+++|+.|++
T Consensus       532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999999999999976553   3455889998875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=6e-19  Score=195.50  Aligned_cols=181  Identities=24%  Similarity=0.298  Sum_probs=81.8

Q ss_pred             CchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCC
Q 042887          378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNC  457 (628)
Q Consensus       378 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  457 (628)
                      .+..+..+++|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+|..++++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3445555666666666666665 34444445666666666666666 45555666666666666666666 456566665


Q ss_pred             cchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCC-CCCeEECcCceeeeecCccccCCCCC
Q 042887          458 QNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT-TLEYLHLQGNSFSGSLPLSLKTLKSI  536 (628)
Q Consensus       458 ~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L  536 (628)
                      ++|    ++|+|++|.|+ .+|..|+.+++|++|+|++|.+++.+|..+..+. .+..|+|++|.+++.+|.      .|
T Consensus       293 ~~L----~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l  361 (727)
T 4b8c_D          293 FQL----KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ER  361 (727)
T ss_dssp             TTC----SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-
T ss_pred             CCC----CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cc
Confidence            555    56666666665 4455566666666666666666655555544321 112355666666655543      23


Q ss_pred             CEEECCCC--------cccccCchhhhcccCCCeEeccCCcCcc
Q 042887          537 KELDLSRN--------NLSGQIPKYLENLLFLAYLNLSYNHFEG  572 (628)
Q Consensus       537 ~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~ls~N~l~~  572 (628)
                      +.|++++|        .+.+..+..+..+..++...+++|-+.+
T Consensus       362 ~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          362 RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             ----------------------------------------CCCG
T ss_pred             ceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence            44445554        3333334444555555666666666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=2.4e-17  Score=151.69  Aligned_cols=155  Identities=23%  Similarity=0.246  Sum_probs=108.8

Q ss_pred             CeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccch-hhhccCCCCEeeCcCCcCcccCCccccCCCCCCeE
Q 042887          437 NRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL-EVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYL  515 (628)
Q Consensus       437 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  515 (628)
                      +.+++++|+++ .+|..+..  ++    +.|++++|++++..+. .|..+++|++|+|++|++++..|..|.++++|++|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l----~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HT----TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TC----SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCcC-cCccCCCC--CC----CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence            67788888876 55554433  44    6778888888765553 37778888888888888887777778888888888


Q ss_pred             ECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCc
Q 042887          516 HLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLC  595 (628)
Q Consensus       516 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c  595 (628)
                      +|++|++++..+..|.++++|++|+|++|++++..|+.|..+++|++|++++|++++..+.......+....+.++...|
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C  163 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC  163 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCC
Confidence            88888888777777778888888888888888777777888888888888888887766532221122223344455556


Q ss_pred             ccC
Q 042887          596 GGL  598 (628)
Q Consensus       596 ~~~  598 (628)
                      +..
T Consensus       164 ~~P  166 (192)
T 1w8a_A          164 GAP  166 (192)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=1.8e-17  Score=149.26  Aligned_cols=134  Identities=19%  Similarity=0.208  Sum_probs=68.5

Q ss_pred             CcccEEEccCCccc-cccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEE
Q 042887          162 LKLEMIDVGDNQLI-GKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIIS  240 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~  240 (628)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..|..+++|++|++++|.+++.+|..+..        
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------   93 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK--------   93 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH--------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh--------
Confidence            44555555555554 34444455555555555555555433  44445555555555555554334444444        


Q ss_pred             eecccCcccCChhhhhCCCCCcEEecccCcccccc-cccccCCCCCCEEEcccccceeecc---cccccCCCCCEEEccC
Q 042887          241 LHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSL-PHSFSNASNLQVLDVYKNHFSGQVK---IDFNRLSNLSRLFLSK  316 (628)
Q Consensus       241 L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~  316 (628)
                                       +++|++|++++|++++.. +..+..+++|++|++++|.+++..+   ..|..+++|++|++++
T Consensus        94 -----------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           94 -----------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             -----------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             -----------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence                             445555555555544321 1445555555555555555554433   3455566666666666


Q ss_pred             CcCCCc
Q 042887          317 NNLGTE  322 (628)
Q Consensus       317 n~l~~~  322 (628)
                      |.+...
T Consensus       157 n~~~~~  162 (168)
T 2ell_A          157 REDQEA  162 (168)
T ss_dssp             TTSCBC
T ss_pred             CChhhc
Confidence            655443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.9e-17  Score=152.28  Aligned_cols=130  Identities=25%  Similarity=0.289  Sum_probs=85.8

Q ss_pred             CeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEE
Q 042887          437 NRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLH  516 (628)
Q Consensus       437 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  516 (628)
                      +.+++++|.++ .+|..+.  +++    +.|++++|+++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l----~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDV----TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTC----CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCC----CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence            34555555555 3333332  233    56666666666 4556677777777777777777766666677777777777


Q ss_pred             CcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccC
Q 042887          517 LQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEV  574 (628)
Q Consensus       517 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~  574 (628)
                      |++|++++..|..|..+++|++|+|++|+|+...+..|..+++|+.|++++|++.+..
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            7777777666666777777777777777777665666777777777777777776543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=6.3e-17  Score=145.61  Aligned_cols=137  Identities=16%  Similarity=0.110  Sum_probs=96.2

Q ss_pred             CCCCEeecccccCc-ccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEE
Q 042887          210 RSLNYLSISENNFS-CKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVL  288 (628)
Q Consensus       210 ~~L~~L~Ls~N~i~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  288 (628)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+  ..+..+++|++|++++|++++..|..+.++++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            44555555555554 344555555555666666666555 23  222346666677777777766677778889999999


Q ss_pred             Ecccccceeecc-cccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccc
Q 042887          289 DVYKNHFSGQVK-IDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV  352 (628)
Q Consensus       289 ~L~~N~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  352 (628)
                      ++++|++++... ..+..+++|++|++++|.++..+..   ....+..+++|+.|++++|.+...
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY---RESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH---HHHHHTTCSSCCEETTEETTSCBC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH---HHHHHHhCccCcEecCCCCChhhc
Confidence            999999987643 6889999999999999999864320   013577889999999999987654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=8.5e-18  Score=186.27  Aligned_cols=187  Identities=19%  Similarity=0.173  Sum_probs=71.6

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      +.++.|+|.+|.+... +..     .|+.++|+.|.|.+              ++++.|.+. ..|+.|..+++|++|+|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence            4577888888887753 332     34444555554432              223334433 34445555555555555


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT  321 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~  321 (628)
                      ++|.+. .+|..++ .+++|++|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|..+++|++|+|++|.++.
T Consensus       232 s~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  307 (727)
T 4b8c_D          232 SNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT  307 (727)
T ss_dssp             TTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC
T ss_pred             CCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc
Confidence            555554 4555544 2555555555555555 44555555555555555555555 334455555555555555555543


Q ss_pred             cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCch
Q 042887          322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS  380 (628)
Q Consensus       322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  380 (628)
                      ++       ..+..+++|+.|+|++|.+++..+..+.........+++++|.+++.+|.
T Consensus       308 lp-------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          308 LP-------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CC-------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             cC-------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            22       22444555555555555555555555544322233345556666555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.70  E-value=1.1e-15  Score=156.84  Aligned_cols=87  Identities=9%  Similarity=0.043  Sum_probs=38.4

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH  242 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~  242 (628)
                      .++.+.+.+ .++.+...+|.+. +|+.+++..+ ++.+...+|.+. +|+.+.+.. .++.+.+.+|.++++|+.++++
T Consensus       114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~  188 (401)
T 4fdw_A          114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS  188 (401)
T ss_dssp             SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred             CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence            344444433 2333444445443 4555555433 443444444442 355555443 3333444444444444444444


Q ss_pred             cccCcccCChhhh
Q 042887          243 SNRFEGSLPLNIG  255 (628)
Q Consensus       243 ~n~l~~~~~~~~~  255 (628)
                      +|.++ .++...|
T Consensus       189 ~n~l~-~I~~~aF  200 (401)
T 4fdw_A          189 KTKIT-KLPASTF  200 (401)
T ss_dssp             TSCCS-EECTTTT
T ss_pred             CCcce-EechhhE
Confidence            44444 3443333

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=1.2e-15  Score=156.55  Aligned_cols=153  Identities=10%  Similarity=0.090  Sum_probs=125.0

Q ss_pred             cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCC
Q 042887          158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE  237 (628)
Q Consensus       158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~  237 (628)
                      +.+. +|+.+++..+ ++.+...+|.+. +|+.+++.. .++.+.+.+|.++++|+.+++++|+++.+...+|. ..+|+
T Consensus       132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~  206 (401)
T 4fdw_A          132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIE  206 (401)
T ss_dssp             TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCS
T ss_pred             cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccC
Confidence            4443 6999999876 777777888884 799999986 67778888999999999999999999976666676 58999


Q ss_pred             EEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887          238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN  317 (628)
Q Consensus       238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n  317 (628)
                      .+.+..+ ++ .++...|.++++|+.+++..| ++.+...+|.+ .+|+.+.+ .+.++.+...+|..+++|+.+++.+|
T Consensus       207 ~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          207 EVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             EEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred             EEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence            9999855 76 788888888999999999875 66677778888 78999998 45677788888888888888888877


Q ss_pred             cCC
Q 042887          318 NLG  320 (628)
Q Consensus       318 ~l~  320 (628)
                      .+.
T Consensus       282 ~~~  284 (401)
T 4fdw_A          282 TFN  284 (401)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=9.1e-17  Score=141.41  Aligned_cols=128  Identities=23%  Similarity=0.296  Sum_probs=79.1

Q ss_pred             CCCCeEecCCcccc-cccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCC
Q 042887          434 TLLNRLFLGFNNLQ-GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTL  512 (628)
Q Consensus       434 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  512 (628)
                      ++++.|++++|.++ +..|..+..+++|    +.|++++|.+++.  ..++.+++|++|++++|.+++.+|..+..+++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEEL----EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTC----CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCC----cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            34445555555554 3444444444444    5555555555533  455566666677777777665556666666777


Q ss_pred             CeEECcCceeeee-cCccccCCCCCCEEECCCCcccccCc---hhhhcccCCCeEeccC
Q 042887          513 EYLHLQGNSFSGS-LPLSLKTLKSIKELDLSRNNLSGQIP---KYLENLLFLAYLNLSY  567 (628)
Q Consensus       513 ~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~ls~  567 (628)
                      ++|++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            7777777777642 23567777777777777777776555   4677777777777763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=3.8e-15  Score=153.67  Aligned_cols=147  Identities=14%  Similarity=0.155  Sum_probs=78.7

Q ss_pred             CcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhh
Q 042887          403 PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV  482 (628)
Q Consensus       403 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~  482 (628)
                      ..+|..+..++.+.+..+... .....|..+..++.+....+.+   ....|.++.+|    +.+.+.++ +..+....|
T Consensus       246 ~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L----~~i~l~~~-i~~I~~~aF  316 (394)
T 4fs7_A          246 KSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSL----TEVKLLDS-VKFIGEEAF  316 (394)
T ss_dssp             SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTC----CEEEECTT-CCEECTTTT
T ss_pred             cccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccc----cccccccc-cceechhhh
Confidence            344555555555555544332 4444555555555555544432   22344555555    44455433 443445556


Q ss_pred             hccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCe
Q 042887          483 GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAY  562 (628)
Q Consensus       483 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  562 (628)
                      .++.+|+.+++.++ ++......|.++++|+.+++..| ++.....+|.++++|+.+++..+ ++ .+...|.+.++|+.
T Consensus       317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            66666666666533 54445556666666766666655 55455566666667777666543 22 22345555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=1.1e-16  Score=140.83  Aligned_cols=126  Identities=17%  Similarity=0.271  Sum_probs=62.7

Q ss_pred             CCCEEecccCcCc-ccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEe
Q 042887          187 ALEAIDISANMLG-GRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLS  265 (628)
Q Consensus       187 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  265 (628)
                      +|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+. .+++|++|+
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~   94 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHLN   94 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEEE
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEEE
Confidence            3444444444443 33344444444444444444444432  3444455555555555555432333222 255555555


Q ss_pred             cccCccccc-ccccccCCCCCCEEEcccccceeecc---cccccCCCCCEEEcc
Q 042887          266 VGQNNFTGS-LPHSFSNASNLQVLDVYKNHFSGQVK---IDFNRLSNLSRLFLS  315 (628)
Q Consensus       266 L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~  315 (628)
                      +++|++++. .+..++.+++|++|++++|++++..+   ..+..+++|++|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555542 23455666666666666666655444   345566666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=3.3e-16  Score=144.00  Aligned_cols=127  Identities=20%  Similarity=0.270  Sum_probs=82.8

Q ss_pred             cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887          165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN  244 (628)
Q Consensus       165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n  244 (628)
                      +.+++++|+++. +|..+  .++|++|++++|.++ .+|..|..+++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            567888887773 44433  257777777777776 55677777777777777777777666667777777777777777


Q ss_pred             cCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccce
Q 042887          245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFS  296 (628)
Q Consensus       245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  296 (628)
                      .++ .++...+..+++|++|+|++|+++...+..|..+++|+.|++++|.+.
T Consensus        89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            776 444444444666666666666666544445555555555555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=3.5e-16  Score=142.05  Aligned_cols=111  Identities=23%  Similarity=0.239  Sum_probs=67.1

Q ss_pred             ceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887          465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN  544 (628)
Q Consensus       465 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  544 (628)
                      +.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence            45555555555444445555666666666666666554555566666666666666666555555566666666666666


Q ss_pred             cccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887          545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       545 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  575 (628)
                      ++++..+..+..+++|++|++++|++++..|
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          111 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            6665555555666666666666666665544

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.66  E-value=7e-17  Score=160.74  Aligned_cols=94  Identities=19%  Similarity=0.301  Sum_probs=77.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||||++....  ....+.+.+|+.+|++++|||||++++++     ++.+.
T Consensus        23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~-----~~~~~   97 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESF-----EENGS   97 (350)
T ss_dssp             CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----EETTE
T ss_pred             ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEE-----EECCE
Confidence            478999999999999999999999999999999997643  34457899999999999999999999995     45789


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+|||||+||+|.+++....
T Consensus        98 ~yiVmEy~~gg~L~~~i~~~~  118 (350)
T 4b9d_A           98 LYIVMDYCEGGDLFKRINAQK  118 (350)
T ss_dssp             EEEEEECCTTCBHHHHHHHTT
T ss_pred             EEEEEeCCCCCcHHHHHHHcC
Confidence            999999999999999997543

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.65  E-value=9.5e-17  Score=159.49  Aligned_cols=92  Identities=22%  Similarity=0.337  Sum_probs=83.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .+.|+..+.||+|+||.||+|++..+|+.||||+++.......+.+.+|+.+|++++|||||++++++.     +.+..|
T Consensus        73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~~~  147 (346)
T 4fih_A           73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDELW  147 (346)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEE
T ss_pred             hHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECCEEE
Confidence            356999999999999999999999999999999998766666678999999999999999999999954     478999


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +|||||+||+|.+++..
T Consensus       148 ivmEy~~gg~L~~~l~~  164 (346)
T 4fih_A          148 VVMEFLEGGALTDIVTH  164 (346)
T ss_dssp             EEECCCTTEEHHHHHHH
T ss_pred             EEEeCCCCCcHHHHHHc
Confidence            99999999999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=7.1e-16  Score=139.99  Aligned_cols=132  Identities=20%  Similarity=0.230  Sum_probs=90.8

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887          164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS  243 (628)
Q Consensus       164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~  243 (628)
                      .+.+++++|+++. +|..+  .++|++|++++|++++..+..|+.+++|++|++++|.+++..+..|..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4677888888774 34332  36788888888888766666777788888888888887765566677777777777777


Q ss_pred             ccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeec
Q 042887          244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQV  299 (628)
Q Consensus       244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~  299 (628)
                      |.++ .+|...+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..
T Consensus        86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            7777 455555445677777777777776555555566666666666666665433

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.65  E-value=8.5e-17  Score=157.35  Aligned_cols=93  Identities=18%  Similarity=0.319  Sum_probs=83.0

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||+||+|++..+|+.||||++++.   .....+.+.+|+++|++++|||||+++++     +++.+.
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~-----~~~~~~  106 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFT-----FQDDEK  106 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEE-----EECSSE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEE-----EEeCCE
Confidence            5799999999999999999999999999999999764   23445779999999999999999999999     456889


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+|||||+||+|.+++.+.+
T Consensus       107 ~yivmEy~~gG~L~~~i~~~~  127 (311)
T 4aw0_A          107 LYFGLSYAKNGELLKYIRKIG  127 (311)
T ss_dssp             EEEEECCCTTEEHHHHHHHHS
T ss_pred             EEEEEecCCCCCHHHHHHHcC
Confidence            999999999999999997643

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.64  E-value=1.5e-16  Score=155.99  Aligned_cols=94  Identities=29%  Similarity=0.502  Sum_probs=80.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      +++|.+.+.||+|+||.||+|++.     .+++.||||+++.......+.|.+|+++|++++|||||+++++|.+     
T Consensus        12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----   86 (299)
T 4asz_A           12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-----   86 (299)
T ss_dssp             GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEee-----
Confidence            467889999999999999999975     3578899999987666667889999999999999999999999653     


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .+..|+|||||++|+|.+++...+
T Consensus        87 ~~~~~lV~Ey~~~G~L~~~l~~~~  110 (299)
T 4asz_A           87 GDPLIMVFEYMKHGDLNKFLRAHG  110 (299)
T ss_dssp             SSSEEEEEECCTTCBHHHHHHHTS
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhcC
Confidence            678999999999999999997654

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.63  E-value=2.2e-16  Score=160.90  Aligned_cols=92  Identities=22%  Similarity=0.337  Sum_probs=83.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .+.|++.+.||+|+||.||+|++..+|+.||||++........+.+.+|+.+|++++|||||++++++.     +.+..|
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~~~  224 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDELW  224 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEE-----ECCEEE
Confidence            457999999999999999999999999999999998766666678999999999999999999999954     478999


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +|||||+||+|.+++..
T Consensus       225 iVmEy~~gG~L~~~i~~  241 (423)
T 4fie_A          225 VVMEFLEGGALTDIVTH  241 (423)
T ss_dssp             EEEECCTTEEHHHHHHH
T ss_pred             EEEeCCCCCcHHHHHhc
Confidence            99999999999998864

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.62  E-value=4e-16  Score=155.26  Aligned_cols=95  Identities=22%  Similarity=0.457  Sum_probs=81.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      +++|.+.+.||+|+||.||+|++.     .+++.||||+++.......+.|.+|+++|++++|||||+++++|.+     
T Consensus        40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----  114 (329)
T 4aoj_A           40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE-----  114 (329)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----
T ss_pred             HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----
Confidence            456778889999999999999975     3578899999987666667889999999999999999999999754     


Q ss_pred             cceeeeeecccccCCchhhhhcccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ....|+|||||++|+|.+++.....
T Consensus       115 ~~~~~lV~Ey~~~G~L~~~l~~~~~  139 (329)
T 4aoj_A          115 GRPLLMVFEYMRHGDLNRFLRSHGP  139 (329)
T ss_dssp             SSSEEEEEECCTTCBHHHHHHTSSC
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhcCc
Confidence            6789999999999999999986653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=4.2e-16  Score=141.27  Aligned_cols=133  Identities=20%  Similarity=0.139  Sum_probs=81.6

Q ss_pred             ccCCCCCCeEecCCcccccccCCcccCCc-chhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccC
Q 042887          430 LGNLTLLNRLFLGFNNLQGNVPSSLGNCQ-NLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSA  508 (628)
Q Consensus       430 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  508 (628)
                      +..+++|+.|++++|+++. +|. +..+. +|    +.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L----~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~   86 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQF----DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA   86 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCC----SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCC----CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc
Confidence            3344455555555555542 222 22222 34    5556666665543  45666667777777777776554455567


Q ss_pred             CCCCCeEECcCceeeeecCc--cccCCCCCCEEECCCCcccccCch----hhhcccCCCeEeccCCcCcc
Q 042887          509 CTTLEYLHLQGNSFSGSLPL--SLKTLKSIKELDLSRNNLSGQIPK----YLENLLFLAYLNLSYNHFEG  572 (628)
Q Consensus       509 l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~ls~N~l~~  572 (628)
                      +++|++|++++|+++ .+|.  .+..+++|+.|++++|+++. .|.    .+..+++|+.||+++|.+..
T Consensus        87 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           87 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            777777777777775 3444  66777777888888887773 444    37777888888888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.61  E-value=3.3e-14  Score=146.59  Aligned_cols=318  Identities=11%  Similarity=0.044  Sum_probs=189.4

Q ss_pred             cccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChh
Q 042887          174 LIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLN  253 (628)
Q Consensus       174 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  253 (628)
                      ++.+...+|.++++|+.+.+.. .++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++ .+...
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence            3334444555555565555543 244444555555555665555433 44344455555555555444332 22 23333


Q ss_pred             hhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccc
Q 042887          254 IGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL  333 (628)
Q Consensus       254 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l  333 (628)
                      .|.+...++.....  ....+...+|.++++|+.+.+.++. ..+....|..+++|+.+.+..+ ++.            
T Consensus       135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~------------  198 (394)
T 4fs7_A          135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKI------------  198 (394)
T ss_dssp             TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCE------------
T ss_pred             eeecccccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceE------------
Confidence            33322222211111  1111233345555555555554332 2244444444444444444332 111            


Q ss_pred             cCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCC
Q 042887          334 TNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQ  413 (628)
Q Consensus       334 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  413 (628)
                                                                 +...+|.++..|+.+.+..+...  +.+.+....+|+
T Consensus       199 -------------------------------------------I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~  233 (394)
T 4fs7_A          199 -------------------------------------------IRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK  233 (394)
T ss_dssp             -------------------------------------------ECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred             -------------------------------------------eCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence                                                       12233444455555544443322  122333445777


Q ss_pred             eEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeC
Q 042887          414 GLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL  493 (628)
Q Consensus       414 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  493 (628)
                      .+.+..+ ++......|..+..++.+.+..+... .....|..+..+    +.+....+.+   ....|.++.+|+.+.+
T Consensus       234 ~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l----~~~~~~~~~i---~~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          234 NIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL----KKVIYGSVIV---PEKTFYGCSSLTEVKL  304 (394)
T ss_dssp             EEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC----CEEEECSSEE---CTTTTTTCTTCCEEEE
T ss_pred             eEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccccc----ceeccCceee---cccccccccccccccc
Confidence            7777643 33355667888999999999887554 677788888888    5666665543   3456888999999999


Q ss_pred             cCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCC
Q 042887          494 SENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN  568 (628)
Q Consensus       494 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  568 (628)
                      .++ ++......|.++++|+.+++..+ ++.....+|.++.+|+.+++..| ++.....+|.++++|+.+++..+
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            765 66567788999999999999865 77677889999999999999887 77677889999999999999755

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=1.1e-17  Score=154.88  Aligned_cols=152  Identities=22%  Similarity=0.246  Sum_probs=117.5

Q ss_pred             cCcccEEEccCCccccccch------hhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCC
Q 042887          161 LLKLEMIDVGDNQLIGKFPD------FIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNIS  234 (628)
Q Consensus       161 l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~  234 (628)
                      ...++.++++.+.+.+..|.      .|..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            34566667777777666665      88899999999999999885 55 8888899999999999988 5777777788


Q ss_pred             CCCEEEeecccCcccCChhhhhCCCCCcEEecccCccccccc-ccccCCCCCCEEEcccccceeecccc----------c
Q 042887          235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLP-HSFSNASNLQVLDVYKNHFSGQVKID----------F  303 (628)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~----------~  303 (628)
                      +|++|++++|.++ .+| .+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..          +
T Consensus        94 ~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           94 TLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             cCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            8999999999988 455 333 48889999999998885443 46888888999999999887665542          6


Q ss_pred             ccCCCCCEEEccCCcCC
Q 042887          304 NRLSNLSRLFLSKNNLG  320 (628)
Q Consensus       304 ~~l~~L~~L~L~~n~l~  320 (628)
                      ..+++|+.||  +|.++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            6778888776  55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=1.4e-15  Score=137.80  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=52.0

Q ss_pred             CcCcccEEEccCCccccccchhhhCC-CCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          160 NLLKLEMIDVGDNQLIGKFPDFIANF-SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      ++.+|+.|++++|+++.. |. +..+ ++|++|++++|.+++.  ..|+.+++|++|++++|.+++..+..|..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            345566666666665532 33 2222 2555555555555543  34555555555555555555333333345555555


Q ss_pred             EEeecccCcccCCh-hhhhCCCCCcEEecccCccc
Q 042887          239 ISLHSNRFEGSLPL-NIGFNIPNVNFLSVGQNNFT  272 (628)
Q Consensus       239 L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~N~l~  272 (628)
                      |++++|.++ .+|. ..+..+++|+.|++++|.++
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            555555554 3333 11122444444444444443

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.58  E-value=1.4e-15  Score=146.59  Aligned_cols=93  Identities=29%  Similarity=0.391  Sum_probs=76.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++++..   ....+.+.+|+++|++++|||||++++++     ++.+
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~-----~~~~   86 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVI-----KSKD   86 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EECC
Confidence            468999999999999999999999999999999997542   33456799999999999999999999994     5588


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+||||| +|++.+++.+..
T Consensus        87 ~~~ivmEy~-~g~L~~~l~~~~  107 (275)
T 3hyh_A           87 EIIMVIEYA-GNELFDYIVQRD  107 (275)
T ss_dssp             EEEEEEECC-CEEHHHHHHHSC
T ss_pred             EEEEEEeCC-CCCHHHHHHHcC
Confidence            999999999 679999987643

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.57  E-value=2.1e-15  Score=148.15  Aligned_cols=98  Identities=18%  Similarity=0.350  Sum_probs=79.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecc-------c
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSID-------F  119 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-------~  119 (628)
                      ++|++.+.||+|+||+||+|+++.+|+.||||+++... ....+.+.+|+.+|++++|||||++++++.+.+       .
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            46899999999999999999999999999999997654 334567999999999999999999999876411       1


Q ss_pred             cccceeeeeecccccCCchhhhhccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ......|+|||||++|+|.+++....
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~  110 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRC  110 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcC
Confidence            12345799999999999999997543

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.57  E-value=2.6e-15  Score=146.12  Aligned_cols=93  Identities=29%  Similarity=0.408  Sum_probs=78.7

Q ss_pred             CcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887           51 SASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        51 ~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      ++.+.||+|+||.||+|.+..+++.||+|.+....  ....+.|.+|+++|++++|||||++++++.+. .......|+|
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~~~~~~lv  107 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec-cCCCcEEEEE
Confidence            66778999999999999999999999999997542  34457799999999999999999999986531 1234678999


Q ss_pred             ecccccCCchhhhhcc
Q 042887          129 YEYMKCGSSEDWMHQS  144 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~  144 (628)
                      ||||++|+|.+++.+.
T Consensus       108 mEy~~gg~L~~~l~~~  123 (290)
T 3fpq_A          108 TELMTSGTLKTYLKRF  123 (290)
T ss_dssp             EECCCSCBHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHhc
Confidence            9999999999999754

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.57  E-value=2.2e-15  Score=148.36  Aligned_cols=94  Identities=22%  Similarity=0.365  Sum_probs=77.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      ..++++.+.||+|+||.||+|++.     .+++.||||+++... ....+.|.+|+.+|++++|||||+++++|.+    
T Consensus        25 ~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~----  100 (308)
T 4gt4_A           25 LSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK----  100 (308)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             HHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE----
Confidence            345677889999999999999974     356889999997543 3345789999999999999999999999754    


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       ....++|||||++|+|.+++....
T Consensus       101 -~~~~~lV~Ey~~~G~L~~~L~~~~  124 (308)
T 4gt4_A          101 -DQPLSMIFSYCSHGDLHEFLVMRS  124 (308)
T ss_dssp             -SSSCEEEEECCSSCBHHHHHHTTC
T ss_pred             -CCEEEEEEEcCCCCcHHHHHHhhC
Confidence             678899999999999999997654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=3.4e-17  Score=151.69  Aligned_cols=161  Identities=24%  Similarity=0.290  Sum_probs=86.6

Q ss_pred             hhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchh
Q 042887          382 IKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLM  461 (628)
Q Consensus       382 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  461 (628)
                      +.....++.++++.+.+.+..|.                 ++ .+|..+..+++|++|++++|++++ +| .+..+++| 
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L-   72 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL-   72 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-
T ss_pred             HHhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-
Confidence            44555666666666666554443                 00 111244445555555555555543 33 44444444 


Q ss_pred             cccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecC-ccccCCCCCCEEE
Q 042887          462 TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLP-LSLKTLKSIKELD  540 (628)
Q Consensus       462 ~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~  540 (628)
                         +.|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|+
T Consensus        73 ---~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           73 ---RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             ---CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             ---CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence               45555555554 344445555566666666666654 22 45556666666666666653222 3556666667777


Q ss_pred             CCCCcccccCch----------hhhcccCCCeEeccCCcCc
Q 042887          541 LSRNNLSGQIPK----------YLENLLFLAYLNLSYNHFE  571 (628)
Q Consensus       541 Ls~N~l~~~~~~----------~~~~l~~L~~L~ls~N~l~  571 (628)
                      +++|++++..|.          .+..+++|+.||  +|.++
T Consensus       147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            777766654443          366777777776  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=1.3e-14  Score=130.41  Aligned_cols=108  Identities=21%  Similarity=0.251  Sum_probs=58.0

Q ss_pred             ceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887          465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN  544 (628)
Q Consensus       465 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  544 (628)
                      +.+++++|+++. +|..+  .++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            345555555542 33333  245555555555555555555555555555555555555444444555555555555555


Q ss_pred             cccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887          545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       545 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  575 (628)
                      +|++..++.|..+++|++|++++|++++..+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            5555444455555555555555555554443

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.54  E-value=3.1e-15  Score=148.13  Aligned_cols=89  Identities=22%  Similarity=0.266  Sum_probs=77.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .+.|++.++||+|+||.||+|+++.+|+.||||+++....     ..+|+.+|++++|||||++++++.     +....|
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~-----~~~~~~  126 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVR-----EGPWVN  126 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEE-----ETTEEE
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEE-----ECCEEE
Confidence            4567888899999999999999999999999999975422     357999999999999999999954     478899


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +|||||+||+|.+++.+.+
T Consensus       127 ivmEy~~gg~L~~~l~~~~  145 (336)
T 4g3f_A          127 IFMELLEGGSLGQLIKQMG  145 (336)
T ss_dssp             EEECCCTTCBHHHHHHHHS
T ss_pred             EEEeccCCCcHHHHHHHcC
Confidence            9999999999999997543

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.54  E-value=1.3e-15  Score=149.00  Aligned_cols=93  Identities=22%  Similarity=0.261  Sum_probs=74.3

Q ss_pred             CCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ++|++.+.||+|+||+||+|++.   .+++.||+|++++..  .....++.+|+++|++++|||||++++++     ++.
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----~~~   98 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAF-----QTE   98 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEE-----EET
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EEC
Confidence            46999999999999999999974   467899999997642  23345788999999999999999999995     457


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +..|+|||||+||+|.+++.+..
T Consensus        99 ~~~~ivmEy~~gg~L~~~l~~~~  121 (304)
T 3ubd_A           99 GKLYLILDFLRGGDLFTRLSKEV  121 (304)
T ss_dssp             TEEEEEECCCTTCEEHHHHHHHC
T ss_pred             CEEEEEEEcCCCCCHHHHHHhcC
Confidence            89999999999999999997643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.53  E-value=8.8e-13  Score=135.89  Aligned_cols=154  Identities=11%  Similarity=0.083  Sum_probs=82.7

Q ss_pred             ccCCcC-cccEEEccCCccccccchhhhCCCCCCEEecccCc---CcccccccccCCCCCCEeecccccCcccCCcCccC
Q 042887          157 QRLNLL-KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANM---LGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWN  232 (628)
Q Consensus       157 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~  232 (628)
                      .+.+.. .|+.+.+..+ ++.+...+|.++++|+.+.++.|.   ++.+...+|..+.+|+.+.+..+ ++.+...+|..
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            344442 4666666543 555556666666666666666543   44445556666666666666543 44355556666


Q ss_pred             CCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEE
Q 042887          233 ISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRL  312 (628)
Q Consensus       233 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  312 (628)
                      +.+|+.+.+..+ ++ .++...|....+|+.+.+..+ ++.+....|.+ .+|+.+.+..+- ..+...+|..+.+++..
T Consensus       136 c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~  210 (394)
T 4gt6_A          136 CEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTI  210 (394)
T ss_dssp             CTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEE
T ss_pred             hcccccccccce-ee-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhcccccee
Confidence            666666666543 22 455555555566666665543 33344444443 445555555432 22444455555555555


Q ss_pred             EccCC
Q 042887          313 FLSKN  317 (628)
Q Consensus       313 ~L~~n  317 (628)
                      ....+
T Consensus       211 ~~~~~  215 (394)
T 4gt6_A          211 TSDSE  215 (394)
T ss_dssp             EECCS
T ss_pred             ccccc
Confidence            44433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=2.7e-14  Score=128.75  Aligned_cols=106  Identities=21%  Similarity=0.270  Sum_probs=55.9

Q ss_pred             eEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCc
Q 042887          466 LLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNN  545 (628)
Q Consensus       466 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  545 (628)
                      .+++++|+++ .+|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            4455555554 3333332  455555555555555545555555555555555555554444444555555555555555


Q ss_pred             ccccCchhhhcccCCCeEeccCCcCcccC
Q 042887          546 LSGQIPKYLENLLFLAYLNLSYNHFEGEV  574 (628)
Q Consensus       546 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~  574 (628)
                      |++..+..|..+++|++|++++|++....
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            55444444555555555555555555443

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.53  E-value=3.4e-15  Score=146.36  Aligned_cols=97  Identities=28%  Similarity=0.414  Sum_probs=80.1

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      |+...+++++.+.||+|+||+||+|++.   ..||||+++...  ....+.|.+|+.+|++++|||||++++++.     
T Consensus        31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-----  102 (307)
T 3omv_A           31 WEIEASEVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-----  102 (307)
T ss_dssp             CBCCTTSCCEEEECCCCSSSEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred             cEEcHHHeEEeeEEeeCCCcEEEEEEEC---CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----
Confidence            4455678889999999999999999874   359999987543  345578999999999999999999999864     


Q ss_pred             ccceeeeeecccccCCchhhhhcccccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                       .+..|+|||||++|+|.+++......+
T Consensus       103 -~~~~~iVmEy~~gGsL~~~l~~~~~~l  129 (307)
T 3omv_A          103 -KDNLAIVTQWCEGSSLYKHLHVQETKF  129 (307)
T ss_dssp             -SSSCEEEEECCSSCBHHHHHHTSCCCC
T ss_pred             -CCeEEEEEEcCCCCCHHHHHhhcCCCC
Confidence             345799999999999999997655444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.51  E-value=3e-12  Score=131.83  Aligned_cols=337  Identities=11%  Similarity=0.154  Sum_probs=222.3

Q ss_pred             cccccchhhhCCC-CCCEEecccCcCcccccccccCCCCCCEeeccccc---CcccCCcCccCCCCCCEEEeecccCccc
Q 042887          174 LIGKFPDFIANFS-ALEAIDISANMLGGRIPDSLCQLRSLNYLSISENN---FSCKLPLSIWNISSLEIISLHSNRFEGS  249 (628)
Q Consensus       174 l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---i~~~~p~~~~~l~~L~~L~L~~n~l~~~  249 (628)
                      ++.+...+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.++.|.   ++.+...+|.++.+|+.+.+..+ ++ .
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~  127 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-E  127 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-E
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-e
Confidence            4555567888885 6999999854 777888999999999999998874   77677888999999999888765 55 6


Q ss_pred             CChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccc
Q 042887          250 LPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDF  329 (628)
Q Consensus       250 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  329 (628)
                      ++...|....+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++.+...+|.. .+|+.+.+..+-. .+..     
T Consensus       128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~-----  198 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGT-----  198 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECT-----
T ss_pred             ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-cccc-----
Confidence            88888888999999999755 45477788999999999999865 56677778865 6799998876532 2221     


Q ss_pred             cccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCC
Q 042887          330 LTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGEL  409 (628)
Q Consensus       330 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  409 (628)
                       ..+..+..++......+......-..+.            .+.........+.....+..+.+. +.+......+|.++
T Consensus       199 -~af~~c~~l~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c  264 (394)
T 4gt6_A          199 -NAFSECFALSTITSDSESYPAIDNVLYE------------KSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSC  264 (394)
T ss_dssp             -TTTTTCTTCCEEEECCSSSCBSSSCEEE------------ECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTC
T ss_pred             -chhhhccccceecccccccccccceeec------------ccccccccccccccccccceEEcC-CcceEcccceeeec
Confidence             2345566676666554433221100000            000000000011112223333332 23333455678888


Q ss_pred             CCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCC
Q 042887          410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLA  489 (628)
Q Consensus       410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~  489 (628)
                      .+|+.+.+..+... .....|.++++|+.+.+. +.++......|.+|.+|    +.+++..+ ++.+....|.++.+|+
T Consensus       265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L----~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISL----KSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTC----CEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCc----CEEEeCCc-ccEehHhHhhCCCCCC
Confidence            88888888765443 566677888888888885 45665667778888888    77788754 5556667888888888


Q ss_pred             EeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887          490 EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       490 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  547 (628)
                      .+.+..+ ++......|.++++|+.+++.++....   ..+....+|+.+.+..|.+.
T Consensus       338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred             EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence            8888654 665666788888899998888876541   45667778888888776654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.51  E-value=8.5e-15  Score=146.88  Aligned_cols=103  Identities=18%  Similarity=0.344  Sum_probs=85.6

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEECCC-----CcEEEEEEeeccc-cchhhhHHHHHHHHhhcCC-CCcccccc
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGET-----GTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRH-RNLIKIIT  112 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~-----~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h-~nIv~l~~  112 (628)
                      ...|+.++++|++.+.||+|+||+||+|.+..+     ++.||||.+.... ....+.|.+|+.+|+++.| ||||++++
T Consensus        56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g  135 (353)
T 4ase_A           56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG  135 (353)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence            346778889999999999999999999998654     3579999997643 3345679999999999975 99999999


Q ss_pred             eeeeccccccceeeeeecccccCCchhhhhcccc
Q 042887          113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      +|..    .....|+|||||++|+|.++++....
T Consensus       136 ~~~~----~~~~~~iV~Ey~~~G~L~~~L~~~~~  165 (353)
T 4ase_A          136 ACTK----PGGPLMVIVEFCKFGNLSTYLRSKRN  165 (353)
T ss_dssp             EECC----TTSCCEEEEECCTTEEHHHHHHHTGG
T ss_pred             EEEe----cCCEEEEEEEcCCCCCHHHHHHhccc
Confidence            9743    34678999999999999999987654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.50  E-value=1.7e-14  Score=154.92  Aligned_cols=99  Identities=21%  Similarity=0.398  Sum_probs=87.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|+++.+|+.||+|++........+.+.+|+.+|+.++|||||+++++     +++....|
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~-----~~~~~~~~  230 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDA-----FEDDNEMV  230 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEE-----EECSSEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEE-----EEECCEEE
Confidence            3679999999999999999999999999999999987665566788999999999999999999999     45588999


Q ss_pred             eeecccccCCchhhhhcccccccc
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKLEA  150 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~~  150 (628)
                      +|||||+||+|.+++.+....+++
T Consensus       231 iv~E~~~gg~L~~~i~~~~~~l~e  254 (573)
T 3uto_A          231 MIYEFMSGGELFEKVADEHNKMSE  254 (573)
T ss_dssp             EEEECCCCCBHHHHHTCTTSCEEH
T ss_pred             EEEeecCCCcHHHHHHHhCCCCCH
Confidence            999999999999999765544543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=7.7e-14  Score=125.27  Aligned_cols=105  Identities=17%  Similarity=0.220  Sum_probs=55.2

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887          164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS  243 (628)
Q Consensus       164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~  243 (628)
                      .+.+|+++|+++. +|..+  .++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3556666666653 33333  25566666666666655555555566666666666655544444455555555555555


Q ss_pred             ccCcccCChhhhhCCCCCcEEecccCccc
Q 042887          244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFT  272 (628)
Q Consensus       244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~  272 (628)
                      |+++ .+|...+..+++|++|+|++|.++
T Consensus        88 N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLK-SIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555 344333333444444444444443

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.49  E-value=2.2e-14  Score=146.54  Aligned_cols=97  Identities=22%  Similarity=0.363  Sum_probs=81.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeee-ccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSS-IDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-~~~~~~~~  124 (628)
                      ++|++.+.||+|+||+||+|++..+|+.||||+++...  ....+++.+|+.+|++++|||||++++++.. ..+.+...
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            57999999999999999999999999999999997543  3345678999999999999999999998654 22445678


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+|||||+ |+|.+++.+..
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~  153 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQ  153 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSS
T ss_pred             EEEEEeCCC-CCHHHHHHhcC
Confidence            999999996 67988886543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1.3e-13  Score=124.31  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=58.7

Q ss_pred             cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887          165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN  244 (628)
Q Consensus       165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n  244 (628)
                      +.+++++|+++ .+|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56666766665 3444332  56666666666666555666666666666666666666444444555666666666666


Q ss_pred             cCcccCChhhhhCCCCCcEEecccCccc
Q 042887          245 RFEGSLPLNIGFNIPNVNFLSVGQNNFT  272 (628)
Q Consensus       245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~  272 (628)
                      +++ .+|...+..+++|++|+|++|.+.
T Consensus        92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence            555 444443334555555555555444

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.44  E-value=7.1e-14  Score=137.94  Aligned_cols=93  Identities=25%  Similarity=0.356  Sum_probs=72.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      ++|.+.+.||+|+||.||+|++  +|+.||||+++.... ....+.+|+..+.+++|||||++++++.+.+ ......|+
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~-~~~~~~~l   78 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecC-CCceEEEE
Confidence            4578889999999999999998  689999999875432 1122345566667889999999999986511 12246899


Q ss_pred             eecccccCCchhhhhcc
Q 042887          128 IYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~  144 (628)
                      |||||++|+|.++++..
T Consensus        79 V~Ey~~~gsL~~~l~~~   95 (303)
T 3hmm_A           79 VSDYHEHGSLFDYLNRY   95 (303)
T ss_dssp             EEECCTTCBHHHHHHHC
T ss_pred             EecCCCCCcHHHHHHhC
Confidence            99999999999999754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.40  E-value=3.2e-14  Score=144.56  Aligned_cols=62  Identities=16%  Similarity=0.107  Sum_probs=27.0

Q ss_pred             CCcCeeeeccccccccCCcCCC-----CCCCCCeEecccCccccccCccc-cCCCCCCeEecCCcccc
Q 042887          386 VNINAFGVEYNQLTGTIPHAIG-----ELKNLQGLALVRNSLRGTIPDTL-GNLTLLNRLFLGFNNLQ  447 (628)
Q Consensus       386 ~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~  447 (628)
                      +.|+.|++++|.++......+.     ..++|++|+|++|.++......+ ..+++|+.|++++|.++
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~  139 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG  139 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence            4455556665555432222211     12455555555555543222222 12334455555555544

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.39  E-value=2.2e-13  Score=145.46  Aligned_cols=94  Identities=26%  Similarity=0.370  Sum_probs=77.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHH---HHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTE---CEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E---~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .++|++.++||+|+||+||+|+++.+|+.||||++++..   ......+.+|   +.+++.++|||||+++++     |+
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~-----f~  262 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYA-----FH  262 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEE-----EE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEE-----EE
Confidence            367999999999999999999999999999999997642   2222333444   566777899999999999     55


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +....|+|||||+||+|.+++.+.+
T Consensus       263 ~~~~lylVmEy~~GGdL~~~l~~~~  287 (689)
T 3v5w_A          263 TPDKLSFILDLMNGGDLHYHLSQHG  287 (689)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHHC
T ss_pred             ECCEEEEEEecCCCCcHHHHHHhcC
Confidence            6889999999999999999997643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.39  E-value=1.5e-14  Score=146.95  Aligned_cols=172  Identities=11%  Similarity=0.145  Sum_probs=99.2

Q ss_pred             CCCCCEEecccCcCcccccccccCC-----CCCCEeecccccCcccCCcCc-cCCCCCCEEEeecccCcccCChhhh---
Q 042887          185 FSALEAIDISANMLGGRIPDSLCQL-----RSLNYLSISENNFSCKLPLSI-WNISSLEIISLHSNRFEGSLPLNIG---  255 (628)
Q Consensus       185 l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~i~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~---  255 (628)
                      +++|+.|+|++|.++......+...     ++|++|+|++|.++......+ ..+++|++|+|++|.+++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4678899999998876554444332     688888888888765433333 2356778888888877633222222   


Q ss_pred             -hCCCCCcEEecccCccccc----ccccccCCCCCCEEEcccccceeec----ccccccCCCCCEEEccCCcCCCcCCCC
Q 042887          256 -FNIPNVNFLSVGQNNFTGS----LPHSFSNASNLQVLDVYKNHFSGQV----KIDFNRLSNLSRLFLSKNNLGTESTSD  326 (628)
Q Consensus       256 -~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~  326 (628)
                       ...++|++|+|++|.++..    ++..+..+++|++|+|++|.|+...    ...+...++|++|+|++|.++..... 
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~-  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL-  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH-
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH-
Confidence             1246677777777777642    2333456667777777777765432    23344555666666666666532211 


Q ss_pred             ccccccccCCCCCceeecccCCcccccchHHH
Q 042887          327 LDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA  358 (628)
Q Consensus       327 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  358 (628)
                       .....+..+++|+.|++++|.++......+.
T Consensus       230 -~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          230 -ALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             -HHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             -HHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence             1122233445555555555555544444433

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.36  E-value=6.3e-13  Score=134.19  Aligned_cols=91  Identities=19%  Similarity=0.283  Sum_probs=77.5

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeecccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~  120 (628)
                      ...+.|++.+.||+|+||.||+|+++   .+++.||+|.+....  ...++.+|+++|+.+ .|||||++++++     +
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~-----~   90 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCF-----R   90 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEE-----E
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEE-----E
Confidence            44578999999999999999999874   457889999986543  345688999999998 599999999984     4


Q ss_pred             ccceeeeeecccccCCchhhhh
Q 042887          121 GVDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~  142 (628)
                      +.+..|+|||||++|+|.+++.
T Consensus        91 ~~~~~~lvmE~~~g~~L~~~~~  112 (361)
T 4f9c_A           91 KNDHVVIAMPYLEHESFLDILN  112 (361)
T ss_dssp             ETTEEEEEEECCCCCCHHHHHT
T ss_pred             ECCEEEEEEeCCCcccHHHHHc
Confidence            5789999999999999999884

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.35  E-value=1.5e-13  Score=142.67  Aligned_cols=102  Identities=21%  Similarity=0.304  Sum_probs=85.6

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecc
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSID  118 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~  118 (628)
                      +.....++|++.+.||+|+||.||+|++..+++.||+|++++..   ......+.+|+.++..++||||+++++++.   
T Consensus        68 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~---  144 (437)
T 4aw2_A           68 QMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ---  144 (437)
T ss_dssp             HHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE---
T ss_pred             cccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe---
Confidence            33445688999999999999999999999999999999997632   233455889999999999999999999854   


Q ss_pred             ccccceeeeeecccccCCchhhhhcccccc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                        +....|+|||||++|+|.+++.+....+
T Consensus       145 --~~~~~~lV~Ey~~gg~L~~~l~~~~~~l  172 (437)
T 4aw2_A          145 --DDNNLYLVMDYYVGGDLLTLLSKFEDRL  172 (437)
T ss_dssp             --CSSEEEEEECCCTTCBHHHHHHTTTTCC
T ss_pred             --eCCEEEEEEecCCCCcHHHHHHHccCCC
Confidence              4788999999999999999997644333

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.33  E-value=2.3e-12  Score=127.24  Aligned_cols=94  Identities=24%  Similarity=0.364  Sum_probs=83.5

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|.+........+.+.+|+.+++.++||||+++++++..     .+..
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~   92 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDEL   92 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred             hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEE-----CCEE
Confidence            34689999999999999999999999999999999987655556778999999999999999999998653     6789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|+|.+++...
T Consensus        93 ~lv~e~~~~~~L~~~~~~~  111 (297)
T 3fxz_A           93 WVVMEYLAGGSLTDVVTET  111 (297)
T ss_dssp             EEEEECCTTCBHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHhhc
Confidence            9999999999999998654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=3e-12  Score=129.62  Aligned_cols=103  Identities=20%  Similarity=0.183  Sum_probs=63.9

Q ss_pred             eEecCCc-ccccccCCcccCCcchhcccceEEcCC-CcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeE
Q 042887          438 RLFLGFN-NLQGNVPSSLGNCQNLMTLSRLLDLSG-NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYL  515 (628)
Q Consensus       438 ~L~L~~N-~l~~~~~~~~~~l~~L~~l~~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  515 (628)
                      .++.+++ +++ .+|. +..+++|    +.|+|++ |+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L----~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENL----TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCC----SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCe----eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            4566665 665 3555 6555555    6666664 66665555666666666666666666666666666666666666


Q ss_pred             ECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887          516 HLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       516 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  547 (628)
                      +|++|+|++..+..+..++ |+.|+|++|++.
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            6666666654444454444 666666666665

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.32  E-value=1.3e-12  Score=130.78  Aligned_cols=95  Identities=24%  Similarity=0.357  Sum_probs=83.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..++|++.+.||+|+||.||+|++..+|+.||+|++....  ....+++.+|+.+|+.++||||+++++++.     ...
T Consensus        13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~~   87 (328)
T 3fe3_A           13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIE-----TEK   87 (328)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred             ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----ECC
Confidence            4578999999999999999999999999999999997642  344567889999999999999999999954     478


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+||||+++|++.+++....
T Consensus        88 ~~~lv~e~~~~~~L~~~l~~~~  109 (328)
T 3fe3_A           88 TLYLIMEYASGGEVFDYLVAHG  109 (328)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHC
T ss_pred             EEEEEEECCCCCcHHHHHHHcC
Confidence            8999999999999999986543

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.31  E-value=2.7e-12  Score=127.70  Aligned_cols=96  Identities=22%  Similarity=0.375  Sum_probs=84.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|.+........+.+.+|++++++++||||+++++++.+     ....+
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~   83 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK-----DKRLN   83 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEEE
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEec-----CCeeE
Confidence            4578999999999999999999999999999999876666667889999999999999999999999654     67899


Q ss_pred             eeecccccCCchhhhhccccc
Q 042887          127 LIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      +||||+++|+|.+++......
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~  104 (310)
T 3s95_A           84 FITEYIKGGTLRGIIKSMDSQ  104 (310)
T ss_dssp             EEEECCTTCBHHHHHHHCCTT
T ss_pred             EEEEecCCCcHHHHHHhccCC
Confidence            999999999999999764433

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.29  E-value=4.2e-12  Score=128.71  Aligned_cols=93  Identities=25%  Similarity=0.332  Sum_probs=81.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .+.|++.+.||+|+||.||+|++..+|+.||+|+++....      ...+.+.+|+.++++++||||+++++++     +
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----~   85 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVY-----E   85 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEE-----E
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEE-----E
Confidence            4679999999999999999999999999999999976432      1346789999999999999999999995     4


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      +....|+||||+++|+|.+++...
T Consensus        86 ~~~~~~lv~e~~~gg~L~~~l~~~  109 (361)
T 2yab_A           86 NRTDVVLILELVSGGELFDFLAQK  109 (361)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHTTC
T ss_pred             eCCEEEEEEEcCCCCcHHHHHHhc
Confidence            578899999999999999998654

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.28  E-value=1.8e-12  Score=133.41  Aligned_cols=96  Identities=18%  Similarity=0.301  Sum_probs=82.9

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      .....++|++.+.||+|+||.||+|++..+++.||+|++.+..   ....+.+.+|+.+++.++|||||++++++.    
T Consensus        64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~----  139 (410)
T 3v8s_A           64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQ----  139 (410)
T ss_dssp             HSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEE----
T ss_pred             cccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEE----
Confidence            3344678999999999999999999999999999999997632   334566889999999999999999999854    


Q ss_pred             cccceeeeeecccccCCchhhhhc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                       +....|+|||||++|+|.+++..
T Consensus       140 -~~~~~~lV~E~~~gg~L~~~l~~  162 (410)
T 3v8s_A          140 -DDRYLYMVMEYMPGGDLVNLMSN  162 (410)
T ss_dssp             -CSSEEEEEECCCTTEEHHHHHHH
T ss_pred             -ECCEEEEEEeCCCCCcHHHHHHc
Confidence             57889999999999999998864

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.28  E-value=2.2e-12  Score=132.94  Aligned_cols=100  Identities=23%  Similarity=0.353  Sum_probs=85.3

Q ss_pred             HHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887           41 ADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSI  117 (628)
Q Consensus        41 ~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~  117 (628)
                      .+.....++|++.+.||+|+||.||+|++..+|+.||+|++++..   ....+.+.+|..++..++||||+++++++   
T Consensus        54 ~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~---  130 (412)
T 2vd5_A           54 KEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF---  130 (412)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE---
T ss_pred             hhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE---
Confidence            333445688999999999999999999999999999999997532   33456688999999999999999999985   


Q ss_pred             cccccceeeeeecccccCCchhhhhccc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                        ++....|+|||||++|+|.+++.+.+
T Consensus       131 --~~~~~~~lVmE~~~gg~L~~~l~~~~  156 (412)
T 2vd5_A          131 --QDENYLYLVMEYYVGGDLLTLLSKFG  156 (412)
T ss_dssp             --ECSSEEEEEECCCCSCBHHHHHHHHS
T ss_pred             --eeCCEEEEEEcCCCCCcHHHHHHhcC
Confidence              45788999999999999999997644

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=9.9e-12  Score=125.75  Aligned_cols=103  Identities=24%  Similarity=0.228  Sum_probs=69.1

Q ss_pred             eEecccC-ccccccCccccCCCCCCeEecCC-cccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEe
Q 042887          414 GLALVRN-SLRGTIPDTLGNLTLLNRLFLGF-NNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEF  491 (628)
Q Consensus       414 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L  491 (628)
                      .++.+++ ++++ +|. +..+++|+.|+|++ |+|++..+..|.++++|    +.|+|++|+|++..|..|.++++|++|
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L----~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL----RNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC----SEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC----CEEECCCCccceeCHHHhcCCcCCCEE
Confidence            4566666 6663 555 66677777777774 77776666667666666    667777777776666667777777777


Q ss_pred             eCcCCcCcccCCccccCCCCCCeEECcCceee
Q 042887          492 DLSENHFSNEIPVTLSACTTLEYLHLQGNSFS  523 (628)
Q Consensus       492 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  523 (628)
                      +|++|+|++..+..+..++ |+.|+|++|.+.
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            7777777755555555554 777777777765

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.27  E-value=8.1e-12  Score=124.80  Aligned_cols=103  Identities=21%  Similarity=0.328  Sum_probs=86.3

Q ss_pred             CcccHHHHHHHhCC----------CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCC
Q 042887           36 PMVSYADLSKATNN----------FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHR  105 (628)
Q Consensus        36 ~~~~~~~~~~~~~~----------~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~  105 (628)
                      +.+++.+...+.+.          |+..+.||+|+||.||+|++..+|+.||||++........+.+.+|+.++++++||
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            45667666655543          66778999999999999999889999999999876655667899999999999999


Q ss_pred             CcccccceeeeccccccceeeeeecccccCCchhhhhc
Q 042887          106 NLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       106 nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ||+++++++..     ....++||||+++|++.+++..
T Consensus       103 niv~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~  135 (321)
T 2c30_A          103 NVVEMYKSYLV-----GEELWVLMEFLQGGALTDIVSQ  135 (321)
T ss_dssp             TBCCEEEEEEE-----TTEEEEEECCCCSCBHHHHHTT
T ss_pred             CcceEEEEEEE-----CCEEEEEEecCCCCCHHHHHHh
Confidence            99999998654     6789999999999999998764

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.27  E-value=3.7e-12  Score=124.89  Aligned_cols=92  Identities=10%  Similarity=0.113  Sum_probs=80.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....   ....+.+.+|+.++++++||||+++++++.     ..+
T Consensus        30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~~  104 (286)
T 3uqc_A           30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVH-----TRA  104 (286)
T ss_dssp             TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETT
T ss_pred             cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEE-----ECC
Confidence            367999999999999999999999899999999997643   233467899999999999999999999954     367


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..|+||||+++++|.+++..
T Consensus       105 ~~~lv~e~~~g~~L~~~l~~  124 (286)
T 3uqc_A          105 GGLVVAEWIRGGSLQEVADT  124 (286)
T ss_dssp             EEEEEEECCCEEEHHHHHTT
T ss_pred             cEEEEEEecCCCCHHHHHhc
Confidence            89999999999999999854

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.27  E-value=4.3e-12  Score=127.38  Aligned_cols=93  Identities=26%  Similarity=0.341  Sum_probs=81.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++++.   .....+.+.+|+.+++.++||||+++++++     ....
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~-----~~~~   78 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAF-----QTHD   78 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEE-----ECSS
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEE-----EeCC
Confidence            46799999999999999999999999999999999764   233456788999999999999999999985     4478


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+||||+++|+|.+++...
T Consensus        79 ~~~lv~E~~~gg~L~~~l~~~   99 (337)
T 1o6l_A           79 RLCFVMEYANGGELFFHLSRE   99 (337)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEEeCCCCCcHHHHHHhc
Confidence            899999999999999888654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.26  E-value=5.7e-12  Score=128.93  Aligned_cols=97  Identities=20%  Similarity=0.270  Sum_probs=84.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .+.|++.+.||+|+||.||+|.+..+|+.||+|++..........+.+|+.+|+.++||||+++++++.     .....+
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~~~  124 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFE-----DKYEMV  124 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEE-----CSSEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEE-----eCCEEE
Confidence            467999999999999999999999999999999997765545567899999999999999999999954     478899


Q ss_pred             eeecccccCCchhhhhcccccc
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      +||||+++|+|.+++......+
T Consensus       125 lv~E~~~gg~L~~~l~~~~~~l  146 (387)
T 1kob_A          125 LILEFLSGGELFDRIAAEDYKM  146 (387)
T ss_dssp             EEEECCCCCBHHHHTTCTTCCB
T ss_pred             EEEEcCCCCcHHHHHHhhcCCC
Confidence            9999999999999987654333

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.26  E-value=6.1e-12  Score=125.65  Aligned_cols=93  Identities=18%  Similarity=0.289  Sum_probs=81.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+.... .....+.+|+.+++.++||||+++++++.     +....+
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~   77 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFE-----SMEELV   77 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEE-----ETTEEE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEe-----cCCEEE
Confidence            468999999999999999999999999999999987543 34466889999999999999999999954     477899


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +|||||++|+|.+++....
T Consensus        78 lv~e~~~g~~L~~~l~~~~   96 (321)
T 1tki_A           78 MIFEFISGLDIFERINTSA   96 (321)
T ss_dssp             EEECCCCCCBHHHHHTSSS
T ss_pred             EEEEeCCCCCHHHHHHhcC
Confidence            9999999999999987654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.26  E-value=8.3e-10  Score=112.99  Aligned_cols=145  Identities=14%  Similarity=0.169  Sum_probs=79.1

Q ss_pred             cCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhh
Q 042887          404 HAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG  483 (628)
Q Consensus       404 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~  483 (628)
                      ..+....+|+.+.+..+ +.......|..+..|+.+.+..+ ++......|.++.+|    +.+.+..+ +.......|.
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l----~~i~l~~~-i~~i~~~aF~  283 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL----KTLNFYAK-VKTVPYLLCS  283 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC----CEEEECCC-CSEECTTTTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh----cccccccc-ceeccccccc
Confidence            34444555555555433 22234445555555655555443 443444555555555    44455432 3334445566


Q ss_pred             ccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcc
Q 042887          484 NLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL  557 (628)
Q Consensus       484 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  557 (628)
                      ++++|+.+++.++.++......|.++.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.+.
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            6666666666666666555566666666776666544 44455556666667776666543 444444555554

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.26  E-value=3.8e-12  Score=125.62  Aligned_cols=99  Identities=29%  Similarity=0.500  Sum_probs=83.6

Q ss_pred             hCCCCcCceeecCCceeEEEEE----ECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGK----LGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~----~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|++.+.||+|+||.||+|+    ...+++.||+|++........+.+.+|+.++++++||||+++++++..   ...
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~   85 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGR   85 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECH---HHH
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---CCC
Confidence            4679999999999999999999    456789999999987666566789999999999999999999998653   234


Q ss_pred             ceeeeeecccccCCchhhhhcccccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      ...++||||+++|+|.+++......+
T Consensus        86 ~~~~lv~e~~~~~~L~~~l~~~~~~~  111 (295)
T 3ugc_A           86 RNLKLIMEYLPYGSLRDYLQKHKERI  111 (295)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHCGGGC
T ss_pred             CceEEEEEeCCCCCHHHHHHhccccc
Confidence            56899999999999999997655433

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.25  E-value=8.4e-12  Score=125.39  Aligned_cols=99  Identities=18%  Similarity=0.342  Sum_probs=80.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccc------
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF------  119 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~------  119 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+.++++++||||+++++++.+..-      
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            357999999999999999999999999999999997543 3455779999999999999999999998754110      


Q ss_pred             ----------------------------------------------cccceeeeeecccccCCchhhhhccc
Q 042887          120 ----------------------------------------------KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ----------------------------------------------~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                                                                    ......++|||||++|+|.+++....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  156 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRC  156 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCC
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhccc
Confidence                                                          11234899999999999999997654

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.25  E-value=5.6e-12  Score=127.66  Aligned_cols=93  Identities=17%  Similarity=0.324  Sum_probs=80.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .+.|++.+.||+|+||.||+|.+..+|+.||+|++....     ....+.+.+|+.+++.++||||+++++++.     .
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~   97 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYS-----S   97 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----E
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEE-----e
Confidence            357999999999999999999999999999999996532     123567899999999999999999999854     4


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ....|+|||||++|+|.+++...
T Consensus        98 ~~~~~lv~e~~~g~~L~~~l~~~  120 (351)
T 3c0i_A           98 DGMLYMVFEFMDGADLCFEIVKR  120 (351)
T ss_dssp             TTEEEEEEECCSSCBHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHh
Confidence            78899999999999998887644

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.24  E-value=8.5e-12  Score=123.02  Aligned_cols=93  Identities=20%  Similarity=0.352  Sum_probs=81.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|.+....   ....+.+.+|+.++++++||||+++++++.     ..+
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~~   84 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDE-----EDD   84 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEE-----CSS
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeee-----eCC
Confidence            467999999999999999999999999999999986532   334567899999999999999999999854     478


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+||||+++|+|.+++...
T Consensus        85 ~~~lv~e~~~g~~L~~~l~~~  105 (294)
T 4eqm_A           85 CYYLVMEYIEGPTLSEYIESH  105 (294)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH
T ss_pred             eEEEEEeCCCCCCHHHHHHhc
Confidence            899999999999999998654

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.24  E-value=8.7e-12  Score=124.68  Aligned_cols=93  Identities=20%  Similarity=0.295  Sum_probs=78.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++.     .....
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~   80 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ   80 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cCCeE
Confidence            468999999999999999999999999999999997543 233467889999999999999999999854     47788


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      |+|||||++|+|.+++...
T Consensus        81 ~lv~e~~~~~~L~~~l~~~   99 (323)
T 3tki_A           81 YLFLEYCSGGELFDRIEPD   99 (323)
T ss_dssp             EEEEECCTTEEGGGGSBTT
T ss_pred             EEEEEcCCCCcHHHHHhhc
Confidence            9999999999999988644

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.24  E-value=7.9e-12  Score=124.46  Aligned_cols=93  Identities=23%  Similarity=0.268  Sum_probs=81.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|+++...   ....+.+.+|+.+++.++||||+++++++     .+..
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~-----~~~~   79 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTF-----QDAQ   79 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEE-----ECSS
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEE-----EeCC
Confidence            467999999999999999999999999999999997642   23456788999999999999999999985     4478


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+||||+++|+|.+++...
T Consensus        80 ~~~lv~e~~~gg~L~~~l~~~  100 (318)
T 1fot_A           80 QIFMIMDYIEGGELFSLLRKS  100 (318)
T ss_dssp             EEEEEECCCCSCBHHHHHHHT
T ss_pred             EEEEEEeCCCCCCHHHHHHHc
Confidence            899999999999999998754

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.23  E-value=4.7e-12  Score=126.65  Aligned_cols=101  Identities=40%  Similarity=0.598  Sum_probs=85.6

Q ss_pred             ccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887           38 VSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSI  117 (628)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~  117 (628)
                      +++.+.....++|++.+.||+|+||.||+|++ .+|+.||+|.+........+.+.+|+.+++.++||||+++++++   
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~---  104 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVL-RDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFC---  104 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEEC-TTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEEC---
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEE-CCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEE---
Confidence            33444455678999999999999999999997 46899999998776555667899999999999999999999985   


Q ss_pred             cccccceeeeeecccccCCchhhhhcc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                        ......++||||+++|+|.+++...
T Consensus       105 --~~~~~~~lv~e~~~~~~L~~~l~~~  129 (321)
T 2qkw_B          105 --DERNEMILIYKYMENGNLKRHLYGS  129 (321)
T ss_dssp             --CCTTCCEEEEECCTTCBTGGGSSSS
T ss_pred             --cCCCeEEEEEEcCCCCcHHHHHhcc
Confidence              4477889999999999999998654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.23  E-value=9e-12  Score=124.87  Aligned_cols=107  Identities=37%  Similarity=0.614  Sum_probs=89.9

Q ss_pred             CCCCcccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCccccc
Q 042887           33 QQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKII  111 (628)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~  111 (628)
                      .....+++.+.....++|++.+.||+|+||.||+|.+ .+|+.||+|++.... ......+.+|+.+++.++||||++++
T Consensus        15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   93 (326)
T 3uim_A           15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRL-ADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLR   93 (326)
T ss_dssp             CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECC-SSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCC
T ss_pred             CccceecHHHHHHHhhccccceeEecCCCcEEEEEEe-cCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceE
Confidence            4456788899999999999999999999999999986 468999999997643 23344789999999999999999999


Q ss_pred             ceeeeccccccceeeeeecccccCCchhhhhccc
Q 042887          112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       112 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +++.     .....++||||+++|+|.+++....
T Consensus        94 ~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~  122 (326)
T 3uim_A           94 GFCM-----TPTERLLVYPYMANGSVASCLRERP  122 (326)
T ss_dssp             EEEC-----CSSCCEEEEECCTTCBHHHHHHCCS
T ss_pred             EEEe-----cCCceEEEEEeccCCCHHHHHHhcc
Confidence            9964     4677899999999999999987654

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.23  E-value=9e-12  Score=126.56  Aligned_cols=93  Identities=18%  Similarity=0.353  Sum_probs=81.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|++....  ....+.+.+|+.++++++||||+++++++.     ....
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~  102 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EESF  102 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCCE
Confidence            467999999999999999999999999999999997643  334567899999999999999999999854     4788


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+|||||++|+|.+++...
T Consensus       103 ~~lv~e~~~gg~L~~~l~~~  122 (362)
T 2bdw_A          103 HYLVFDLVTGGELFEDIVAR  122 (362)
T ss_dssp             EEEEECCCCSCBHHHHHTTC
T ss_pred             EEEEEecCCCCCHHHHHHHc
Confidence            99999999999999888654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.23  E-value=6.2e-12  Score=128.66  Aligned_cols=101  Identities=23%  Similarity=0.406  Sum_probs=84.8

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .+....++|.+.+.||+|+||.||+|.+..+++.||+|.++... ....+.|.+|+.+|++++||||+++++++.     
T Consensus       108 ~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----  182 (377)
T 3cbl_A          108 KWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCT-----  182 (377)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred             ccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe-----
Confidence            33445578889999999999999999998899999999987542 334567899999999999999999999964     


Q ss_pred             ccceeeeeecccccCCchhhhhccccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      .....++||||+++|+|.+++......
T Consensus       183 ~~~~~~lv~e~~~~g~L~~~l~~~~~~  209 (377)
T 3cbl_A          183 QKQPIYIVMELVQGGDFLTFLRTEGAR  209 (377)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHHGGG
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHhcCCC
Confidence            367789999999999999999765433

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.23  E-value=8.3e-12  Score=125.69  Aligned_cols=96  Identities=20%  Similarity=0.310  Sum_probs=81.0

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDF  119 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~  119 (628)
                      ....++|++.+.||+|+||.||+|++..+|+.||+|+++...   ....+.+.+|..++..+ +||||+++++++     
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~-----   87 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTF-----   87 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEE-----
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEE-----
Confidence            345688999999999999999999999999999999997642   33456678899999887 899999999985     


Q ss_pred             cccceeeeeecccccCCchhhhhcc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++....|+||||+++|+|.+++...
T Consensus        88 ~~~~~~~lv~E~~~gg~L~~~l~~~  112 (345)
T 1xjd_A           88 QTKENLFFVMEYLNGGDLMYHIQSC  112 (345)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc
Confidence            4578899999999999999998653

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.23  E-value=7.3e-12  Score=127.71  Aligned_cols=93  Identities=19%  Similarity=0.298  Sum_probs=81.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.+|+.++|||||++++++.     +..
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~-----~~~   88 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQ-----DEE   88 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence            467999999999999999999999999999999997542   334567889999999999999999999854     478


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+||||+++|+|.+++...
T Consensus        89 ~~~lv~e~~~gg~L~~~l~~~  109 (384)
T 4fr4_A           89 DMFMVVDLLLGGDLRYHLQQN  109 (384)
T ss_dssp             EEEEEECCCTTEEHHHHHHTT
T ss_pred             EEEEEEecCCCCcHHHHHHhc
Confidence            899999999999999998754

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.22  E-value=9.7e-12  Score=125.66  Aligned_cols=95  Identities=27%  Similarity=0.363  Sum_probs=80.7

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhc-CCCCcccccceeeecccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~  120 (628)
                      ...++|++.+.||+|+||.||+|++..+|+.||+|+++..   .....+.+.+|..+++.+ .||||+++++++     .
T Consensus        20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~   94 (353)
T 3txo_A           20 LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF-----Q   94 (353)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEE-----E
T ss_pred             CchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEE-----E
Confidence            3457899999999999999999999999999999999764   233456788999999988 699999999985     4


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      +....|+|||||++|+|.+++...
T Consensus        95 ~~~~~~lv~E~~~gg~L~~~l~~~  118 (353)
T 3txo_A           95 TPDRLFFVMEFVNGGDLMFHIQKS  118 (353)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHH
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHHc
Confidence            578899999999999999998654

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.22  E-value=1.1e-11  Score=124.19  Aligned_cols=96  Identities=23%  Similarity=0.461  Sum_probs=80.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCc---EEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGT---TVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~---~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|++.+.||+|+||.||+|++..+++   .||||+++.. .....+.+.+|+.++++++||||+++++++.     ..
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~  122 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVT-----RG  122 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----GG
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eC
Confidence            4578889999999999999999986555   4999999764 3344567999999999999999999999954     47


Q ss_pred             ceeeeeecccccCCchhhhhccccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      ...++||||+++|+|.+++......
T Consensus       123 ~~~~lv~e~~~~~~L~~~l~~~~~~  147 (325)
T 3kul_A          123 RLAMIVTEYMENGSLDTFLRTHDGQ  147 (325)
T ss_dssp             GCCEEEEECCTTCBHHHHHHTTTTC
T ss_pred             CccEEEeeCCCCCcHHHHHHhcccC
Confidence            7889999999999999999655433

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.22  E-value=1.1e-11  Score=125.79  Aligned_cols=92  Identities=22%  Similarity=0.269  Sum_probs=80.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++..... ..+.+.+|+.+++.++||||+++++++.     .....+
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~~~   92 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVIL-----TPTHLA   92 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEe-----eCCEEE
Confidence            4689999999999999999999999999999999975432 3466889999999999999999999954     477899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +|||||++|+|.+++...
T Consensus        93 lv~e~~~~~~L~~~l~~~  110 (361)
T 3uc3_A           93 IIMEYASGGELYERICNA  110 (361)
T ss_dssp             EEEECCCSCBHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHhc
Confidence            999999999999988653

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.22  E-value=1.5e-11  Score=122.76  Aligned_cols=96  Identities=26%  Similarity=0.458  Sum_probs=81.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .+.|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|++++++++||||+++++++..   ......
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~~   84 (319)
T 4euu_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE---TTTRHK   84 (319)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---TTTCCE
T ss_pred             CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeec---CCCceE
Confidence            357999999999999999999999999999999997543 3345678899999999999999999998653   234578


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||+++|+|.+++....
T Consensus        85 ~lv~e~~~~~~L~~~l~~~~  104 (319)
T 4euu_A           85 VLIMEFCPCGSLYTVLEEPS  104 (319)
T ss_dssp             EEEEECCTTCBHHHHHHSGG
T ss_pred             EEEEeCCCCCCHHHHHHHhc
Confidence            99999999999999997654

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.22  E-value=1.7e-11  Score=122.82  Aligned_cols=93  Identities=22%  Similarity=0.338  Sum_probs=80.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .+.|++.+.||+|+||.||+|.+..+|+.||+|++.....      ...+.+.+|+.++++++||||+++++++.     
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----   84 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYE-----   84 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEE-----
Confidence            3568999999999999999999999999999999976432      13467899999999999999999999854     


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .....++||||+++|+|.+++...
T Consensus        85 ~~~~~~lv~e~~~~~~L~~~l~~~  108 (326)
T 2y0a_A           85 NKTDVILILELVAGGELFDFLAEK  108 (326)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHTTS
T ss_pred             eCCEEEEEEEcCCCCCHHHHHHhc
Confidence            477899999999999999998653

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.22  E-value=9.4e-12  Score=125.81  Aligned_cols=95  Identities=22%  Similarity=0.345  Sum_probs=82.5

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-----ccchhhhHHHHHHHHhhcCCCCcccccceeeecc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIKIITVCSSID  118 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-----~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~  118 (628)
                      ....++|++.+.||+|+||.||+|++..+++.||+|++...     .....+.+.+|+.++++++||||+++++++.   
T Consensus        22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~---   98 (345)
T 3hko_A           22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE---   98 (345)
T ss_dssp             HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE---
T ss_pred             hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc---
Confidence            44567899999999999999999999999999999999753     2345578999999999999999999999954   


Q ss_pred             ccccceeeeeecccccCCchhhhhc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                        .....++|||||++|+|.+++..
T Consensus        99 --~~~~~~lv~e~~~gg~L~~~l~~  121 (345)
T 3hko_A           99 --DEQYICLVMELCHGGHLLDKLNV  121 (345)
T ss_dssp             --CSSEEEEEEECCCSCBHHHHEEE
T ss_pred             --cCCeEEEEEeCCCCCcHHHHHHH
Confidence              47889999999999999999864

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.22  E-value=9.8e-12  Score=122.25  Aligned_cols=95  Identities=26%  Similarity=0.508  Sum_probs=82.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCC-------cEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETG-------TTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~-------~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      .++|++.+.||+|+||.||+|++..++       +.||+|.+........+.+.+|+.++++++||||+++++++.    
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----   82 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCV----   82 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEEC----
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEE----
Confidence            467999999999999999999998776       469999997766666788999999999999999999999954    


Q ss_pred             cccceeeeeecccccCCchhhhhcccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                       .....++||||+++|+|.+++.....
T Consensus        83 -~~~~~~lv~e~~~~~~L~~~l~~~~~  108 (289)
T 4fvq_A           83 -CGDENILVQEFVKFGSLDTYLKKNKN  108 (289)
T ss_dssp             -CTTCCEEEEECCTTCBHHHHHHHTGG
T ss_pred             -eCCCCEEEEECCCCCCHHHHHHhCCC
Confidence             46778999999999999999976553

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.21  E-value=1.2e-11  Score=125.00  Aligned_cols=93  Identities=23%  Similarity=0.297  Sum_probs=81.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....   ....+.+.+|+.+++.++||||+++++++     .+..
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~  114 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSF-----KDNS  114 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----ECSS
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----EcCC
Confidence            367999999999999999999999999999999997542   23456788999999999999999999985     4478


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+||||+++|+|.+++.+.
T Consensus       115 ~~~lv~e~~~gg~L~~~l~~~  135 (350)
T 1rdq_E          115 NLYMVMEYVAGGEMFSHLRRI  135 (350)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEEcCCCCCcHHHHHHHc
Confidence            899999999999999998754

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.21  E-value=1.5e-11  Score=124.02  Aligned_cols=93  Identities=20%  Similarity=0.253  Sum_probs=80.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.++.++ +||||+++++++     .+.
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----~~~   82 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----QTE   82 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE-----ECS
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEE-----EeC
Confidence            357999999999999999999999999999999997642   23456688999999988 799999999985     447


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...|+||||+++|+|.+++...
T Consensus        83 ~~~~lv~e~~~gg~L~~~l~~~  104 (345)
T 3a8x_A           83 SRLFFVIEYVNGGDLMFHMQRQ  104 (345)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHH
T ss_pred             CEEEEEEeCCCCCcHHHHHHHc
Confidence            8899999999999999988654

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.20  E-value=1.1e-11  Score=129.09  Aligned_cols=95  Identities=16%  Similarity=0.246  Sum_probs=80.6

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|++....  ....+.+.+|+.+++.++||||+++++++     ....
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----~~~~   83 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSI-----SEEG   83 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEE-----ECSS
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEE-----EECC
Confidence            3467999999999999999999999999999999997643  23456789999999999999999999985     4578


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+|||||++|+|.+++....
T Consensus        84 ~~~lv~E~~~gg~L~~~i~~~~  105 (444)
T 3soa_A           84 HHYLIFDLVTGGELFEDIVARE  105 (444)
T ss_dssp             EEEEEECCCBCCBHHHHHHHCS
T ss_pred             EEEEEEEeCCCCCHHHHHHHcC
Confidence            8999999999999999887543

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.20  E-value=1.4e-11  Score=120.40  Aligned_cols=93  Identities=20%  Similarity=0.219  Sum_probs=82.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+........+.+.+|++++++++||||+++++++.     .....+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~   82 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE-----DNTDIY   82 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEEE
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCeEE
Confidence            457999999999999999999999999999999998765556678999999999999999999999854     477899


Q ss_pred             eeecccccCCchhhhhcc
Q 042887          127 LIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~  144 (628)
                      +||||++++++.+++...
T Consensus        83 lv~e~~~~~~L~~~~~~~  100 (277)
T 3f3z_A           83 LVMELCTGGELFERVVHK  100 (277)
T ss_dssp             EEEECCCSCBHHHHHHHH
T ss_pred             EEEeccCCCcHHHHHHHc
Confidence            999999999999888654

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.20  E-value=1.4e-11  Score=126.12  Aligned_cols=94  Identities=19%  Similarity=0.251  Sum_probs=80.1

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++++..   ....+.+.+|..++.++ +|||||++++++     .+
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~~  124 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----QT  124 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEE-----EC
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEE-----EE
Confidence            3568999999999999999999999999999999997642   33456688999999887 799999999985     45


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ....|+|||||++|+|.+++.+.
T Consensus       125 ~~~~~lV~E~~~gg~L~~~l~~~  147 (396)
T 4dc2_A          125 ESRLFFVIEYVNGGDLMFHMQRQ  147 (396)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH
T ss_pred             CCEEEEEEEcCCCCcHHHHHHHc
Confidence            78899999999999999988754

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.20  E-value=9.4e-12  Score=123.58  Aligned_cols=96  Identities=24%  Similarity=0.420  Sum_probs=81.5

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      +....++|++.+.||+|+||.||+|++  +|+.||+|++....  ....+.+.+|+.++++++||||+++++++.     
T Consensus        32 ~~i~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----  104 (309)
T 3p86_A           32 MDIPWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT-----  104 (309)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred             ccCChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----
Confidence            334567899999999999999999988  68899999987543  334567899999999999999999999854     


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .....++||||+++|+|.+++....
T Consensus       105 ~~~~~~lv~e~~~~~~L~~~l~~~~  129 (309)
T 3p86_A          105 QPPNLSIVTEYLSRGSLYRLLHKSG  129 (309)
T ss_dssp             STTCCEEEEECCTTCBHHHHHHSTT
T ss_pred             ECCceEEEEecCCCCcHHHHHhhcC
Confidence            4677899999999999999997654

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.19  E-value=1.5e-11  Score=125.45  Aligned_cols=89  Identities=22%  Similarity=0.357  Sum_probs=73.4

Q ss_pred             CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887           53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM  132 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~  132 (628)
                      .+.||+|+||.||+|++..+|+.||+|+++.......+.+.+|+.++++++||||+++++++.     .....++||||+
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~lv~E~~  168 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFE-----SKNDIVLVMEYV  168 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSEEEEEEECC
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEE-----ECCEEEEEEeCC
Confidence            567999999999999999999999999998765556678999999999999999999999954     467899999999


Q ss_pred             ccCCchhhhhcccc
Q 042887          133 KCGSSEDWMHQSND  146 (628)
Q Consensus       133 ~~g~L~~~l~~~~~  146 (628)
                      ++|+|.+++.....
T Consensus       169 ~~~~L~~~l~~~~~  182 (373)
T 2x4f_A          169 DGGELFDRIIDESY  182 (373)
T ss_dssp             TTCEEHHHHHHTGG
T ss_pred             CCCcHHHHHHhcCC
Confidence            99999998875543

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.19  E-value=9.7e-12  Score=126.48  Aligned_cols=103  Identities=19%  Similarity=0.372  Sum_probs=85.7

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEE-----ECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccc
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGK-----LGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIIT  112 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~-----~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~  112 (628)
                      ...+....++|++.+.||+|+||.||+|+     ...+++.||||+++... ....+.+.+|+++++++ +||||+++++
T Consensus        14 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~   93 (359)
T 3vhe_A           14 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   93 (359)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeee
Confidence            55666778899999999999999999999     44567899999997643 33456799999999999 7999999999


Q ss_pred             eeeeccccccceeeeeecccccCCchhhhhcccc
Q 042887          113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ++.+    .....++|||||++|+|.+++.....
T Consensus        94 ~~~~----~~~~~~iv~e~~~~g~L~~~l~~~~~  123 (359)
T 3vhe_A           94 ACTK----PGGPLMVIVEFCKFGNLSTYLRSKRN  123 (359)
T ss_dssp             EECS----TTSCCEEEEECCTTEEHHHHHHTTTT
T ss_pred             eeec----CCCceEEEEEecCCCcHHHHHHhccc
Confidence            8643    34558999999999999999987653

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.19  E-value=1.4e-11  Score=125.68  Aligned_cols=95  Identities=24%  Similarity=0.487  Sum_probs=79.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|++.+.||+|+||.||+|++.   .++..||+|.++... ....+.|.+|+.++++++||||+++++++.     ..
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~  118 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVT-----KS  118 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----SS
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----eC
Confidence            357999999999999999999986   457789999997643 344567999999999999999999999964     46


Q ss_pred             ceeeeeecccccCCchhhhhcccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ...++||||+++|+|.+++.....
T Consensus       119 ~~~~lv~e~~~~~sL~~~l~~~~~  142 (373)
T 2qol_A          119 KPVMIVTEYMENGSLDSFLRKHDA  142 (373)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTTT
T ss_pred             CceEEEEeCCCCCcHHHHHHhCCC
Confidence            788999999999999999976543

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.19  E-value=1.8e-11  Score=121.22  Aligned_cols=95  Identities=24%  Similarity=0.397  Sum_probs=80.6

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..+.|++.+.||+|+||.||+|.+..+++.||+|++........+.+.+|+.+++.++||||+++++++..     ....
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~   91 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYH-----DGKL   91 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----C-CE
T ss_pred             CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeee-----CCeE
Confidence            45689999999999999999999999999999999977655566789999999999999999999998653     6788


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||++++++.+++....
T Consensus        92 ~lv~e~~~~~~l~~~~~~~~  111 (302)
T 2j7t_A           92 WIMIEFCPGGAVDAIMLELD  111 (302)
T ss_dssp             EEEEECCTTEEHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHhhc
Confidence            99999999999999886543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.19  E-value=8e-09  Score=105.63  Aligned_cols=311  Identities=11%  Similarity=0.046  Sum_probs=164.7

Q ss_pred             CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      .+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+...+|.+. +|+.+.+..+ ++.+...+|.. .+|+.+.+
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l  120 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF  120 (379)
T ss_dssp             GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred             cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence            4566666653 455555667777777777777543 555556666665 4666655433 44344444544 35666666


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT  321 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~  321 (628)
                      ..+ ++ .+....|.. .+++.+.+..+ ++.+....|.++.+++.+.+..+.........+. .....           
T Consensus       121 p~~-~~-~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~-----------  184 (379)
T 4h09_A          121 PGA-TT-EIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNK-----------  184 (379)
T ss_dssp             CTT-CC-EECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTS-----------
T ss_pred             CCc-cc-ccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccccc-----------
Confidence            544 22 333333332 23444333322 2223333444444444444433322111110000 00000           


Q ss_pred             cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccccc
Q 042887          322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGT  401 (628)
Q Consensus       322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  401 (628)
                            .....+..+..+..+.                         +... ........+....+++.+.+..+ +...
T Consensus       185 ------~~~~~~~~~~~~~~~~-------------------------~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i  231 (379)
T 4h09_A          185 ------TILESYPAAKTGTEFT-------------------------IPST-VKTVTAYGFSYGKNLKKITITSG-VTTL  231 (379)
T ss_dssp             ------SEEEECCTTCCCSEEE-------------------------CCTT-CCEECTTTTTTCSSCSEEECCTT-CCEE
T ss_pred             ------ceeccccccccccccc-------------------------cccc-eeEEeecccccccccceeeeccc-eeEE
Confidence                  0000011111122111                         1111 11123344555666666665443 3334


Q ss_pred             CCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchh
Q 042887          402 IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE  481 (628)
Q Consensus       402 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~  481 (628)
                      ...+|..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.+|.+|    +.+.+.++.++.+....
T Consensus       232 ~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L----~~i~l~~~~i~~I~~~a  305 (379)
T 4h09_A          232 GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL----TKVVMDNSAIETLEPRV  305 (379)
T ss_dssp             CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC----CEEEECCTTCCEECTTT
T ss_pred             ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc----ccccccccccceehhhh
Confidence            5566777777777777655 55455666777777777777543 554556677777777    66777777777666677


Q ss_pred             hhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCC
Q 042887          482 VGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLK  534 (628)
Q Consensus       482 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  534 (628)
                      |.++.+|+.+++..+ ++.+....|.++++|+.+.+..+ ++.+...+|.+.+
T Consensus       306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            888888888888654 55555667888888888887655 5545566666553

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.19  E-value=2.3e-11  Score=120.15  Aligned_cols=93  Identities=24%  Similarity=0.379  Sum_probs=75.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--------------------------chhhhHHHHHHHHh
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--------------------------GAAKSFVTECEALS  100 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------------------------~~~~~~~~E~~~l~  100 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++.....                          ...+.+.+|+++++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999965321                          12356899999999


Q ss_pred             hcCCCCcccccceeeeccccccceeeeeecccccCCchhhhh
Q 042887          101 NVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       101 ~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~  142 (628)
                      +++||||+++++++.+   ......|+||||+++|++.++..
T Consensus        92 ~l~h~~iv~~~~~~~~---~~~~~~~lv~e~~~~~~l~~~~~  130 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDD---PNEDHLYMVFELVNQGPVMEVPT  130 (298)
T ss_dssp             TCCCTTBCCEEEEEEC---SSSSEEEEEEECCTTCBSCCSSC
T ss_pred             hCCCCCCCeEEEEEEc---CCCCEEEEEEecCCCCcHHHHhh
Confidence            9999999999998653   23568899999999999987643

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.19  E-value=2.6e-11  Score=120.88  Aligned_cols=93  Identities=23%  Similarity=0.304  Sum_probs=80.6

Q ss_pred             hCCCCcC-ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccce
Q 042887           47 TNNFSAS-NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~-~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .+.|++. +.||+|+||.||+|++..+++.||+|++........+.+.+|+.++.++ +||||+++++++.     ..+.
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~-----~~~~   85 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFE-----EEDR   85 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTE
T ss_pred             ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEe-----eCCE
Confidence            3568874 7899999999999999999999999999776555567899999999985 7999999999954     4778


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+||||+++|+|.+++...
T Consensus        86 ~~lv~e~~~~~~L~~~l~~~  105 (316)
T 2ac3_A           86 FYLVFEKMRGGSILSHIHKR  105 (316)
T ss_dssp             EEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHhcc
Confidence            99999999999999998654

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.19  E-value=2.2e-11  Score=125.46  Aligned_cols=96  Identities=26%  Similarity=0.458  Sum_probs=81.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .+.|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|++++++++||||+++++++..   ......
T Consensus         8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~---~~~~~~   84 (396)
T 4eut_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE---TTTRHK   84 (396)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---TTTCCE
T ss_pred             CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeecc---CCCCee
Confidence            357999999999999999999999999999999997543 3345678899999999999999999998653   234477


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++|||||++|+|.+++....
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~  104 (396)
T 4eut_A           85 VLIMEFCPCGSLYTVLEEPS  104 (396)
T ss_dssp             EEEECCCTTEEHHHHTTSGG
T ss_pred             EEEEecCCCCCHHHHHHhhh
Confidence            99999999999999987654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.18  E-value=3.5e-11  Score=124.83  Aligned_cols=94  Identities=22%  Similarity=0.280  Sum_probs=78.7

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--------cchhhhHHHHHHHHhhcCCCCcccccceeee
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--------KGAAKSFVTECEALSNVRHRNLIKIITVCSS  116 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--------~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~  116 (628)
                      ...++|.+.+.||+|+||.||+|.+..+++.||+|++....        ......+.+|+.+|++++||||+++++++. 
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-  210 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-  210 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence            45688999999999999999999999999999999997532        122346889999999999999999999853 


Q ss_pred             ccccccceeeeeecccccCCchhhhhcc
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                           ....|+||||+++|+|.+++...
T Consensus       211 -----~~~~~lv~e~~~~g~L~~~l~~~  233 (419)
T 3i6u_A          211 -----AEDYYIVLELMEGGELFDKVVGN  233 (419)
T ss_dssp             -----SSEEEEEEECCTTCBGGGGTSSS
T ss_pred             -----cCceEEEEEcCCCCcHHHHHhcc
Confidence                 34579999999999999888654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.18  E-value=1.7e-11  Score=128.64  Aligned_cols=93  Identities=28%  Similarity=0.412  Sum_probs=81.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|.+.+.||+|+||.||+|++..+|+.||+|++....   ....+.+.+|+.+++.++||||+++++++.     ...
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~-----~~~   89 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIS-----TPS   89 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECC
Confidence            468999999999999999999999999999999997542   234567899999999999999999999954     477


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+|||||++|+|.+++.+.
T Consensus        90 ~~~lv~E~~~gg~L~~~l~~~  110 (476)
T 2y94_A           90 DIFMVMEYVSGGELFDYICKN  110 (476)
T ss_dssp             EEEEEEECCSSEEHHHHTTSS
T ss_pred             EEEEEEeCCCCCcHHHHHHhc
Confidence            899999999999999998654

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.18  E-value=2.6e-11  Score=124.68  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=81.9

Q ss_pred             hCCCCcCceeecC--CceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQG--SFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G--~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|++.+.||+|  +||.||+|++..+|+.||+|++....  ....+.+.+|+.+++.++|||||++++++.     ..
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~   98 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFI-----AD   98 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ET
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEE-----EC
Confidence            4579999999999  99999999999999999999997643  344567889999999999999999999965     47


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...|+|||||++|++.+++...
T Consensus        99 ~~~~lv~e~~~~~~L~~~l~~~  120 (389)
T 3gni_B           99 NELWVVTSFMAYGSAKDLICTH  120 (389)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHT
T ss_pred             CEEEEEEEccCCCCHHHHHhhh
Confidence            7899999999999999998754

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.18  E-value=2.3e-11  Score=119.31  Aligned_cols=93  Identities=22%  Similarity=0.287  Sum_probs=81.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|++++++++||||+++++++.     .....
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~   95 (285)
T 3is5_A           21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFE-----DYHNM   95 (285)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEE
T ss_pred             hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHhee-----cCCeE
Confidence            457999999999999999999999999999999997653 334577899999999999999999999954     47789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|++.+++...
T Consensus        96 ~lv~e~~~~~~L~~~l~~~  114 (285)
T 3is5_A           96 YIVMETCEGGELLERIVSA  114 (285)
T ss_dssp             EEEECCCSCCBHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHhh
Confidence            9999999999999988643

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.18  E-value=2.2e-11  Score=120.71  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=79.1

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|.+.+.||+|+||.||+|++..+|+.||+|++........+.+.+|+.++++++||||+++++++.     .....
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~   81 (304)
T 2jam_A            7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYE-----STTHY   81 (304)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred             hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcc-----cCCEE
Confidence            3467999999999999999999999999999999998655445567899999999999999999999854     47789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|+|.+++...
T Consensus        82 ~lv~e~~~~~~L~~~l~~~  100 (304)
T 2jam_A           82 YLVMQLVSGGELFDRILER  100 (304)
T ss_dssp             EEEECCCCSCBHHHHHHHH
T ss_pred             EEEEEcCCCccHHHHHHHc
Confidence            9999999999999988653

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.17  E-value=1.9e-11  Score=122.58  Aligned_cols=92  Identities=23%  Similarity=0.299  Sum_probs=79.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|.+.+.||+|+||.||+|.+..+|+.||+|++....   ......+.+|+.+++.++||||+++++++.     ...
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~~   82 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVIT-----TPT   82 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCC
Confidence            468999999999999999999999999999999997542   233467899999999999999999999954     477


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++||||+ +|++.+++...
T Consensus        83 ~~~lv~E~~-~g~l~~~l~~~  102 (336)
T 3h4j_B           83 DIVMVIEYA-GGELFDYIVEK  102 (336)
T ss_dssp             EEEEEECCC-CEEHHHHHHHH
T ss_pred             EEEEEEECC-CCcHHHHHHHc
Confidence            899999999 67888887654

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.17  E-value=2.9e-11  Score=120.83  Aligned_cols=93  Identities=25%  Similarity=0.332  Sum_probs=80.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .+.|++.+.||+|+||.||+|++..+|+.||+|++.....      ...+.+.+|+.++++++||||+++++++.     
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----   85 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYE-----   85 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEe-----
Confidence            4569999999999999999999999999999999976432      13467899999999999999999999854     


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .....++||||+++++|.+++...
T Consensus        86 ~~~~~~lv~e~~~~~~L~~~l~~~  109 (321)
T 2a2a_A           86 NRTDVVLILELVSGGELFDFLAQK  109 (321)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHTC
T ss_pred             cCCEEEEEEEcCCCCcHHHHHHhc
Confidence            477899999999999999998653

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.17  E-value=2.4e-11  Score=122.81  Aligned_cols=92  Identities=24%  Similarity=0.307  Sum_probs=74.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..+.|++.+.||+|+||.||+|++..+++.||+|++....  ..+.+.+|+.++++++||||+++++++.     .....
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~~~~  123 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFE-----TPTEI  123 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEe-----cCCeE
Confidence            3467999999999999999999999999999999997543  3456889999999999999999999954     47789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|+|.+++...
T Consensus       124 ~lv~e~~~~~~L~~~l~~~  142 (349)
T 2w4o_A          124 SLVLELVTGGELFDRIVEK  142 (349)
T ss_dssp             EEEECCCCSCBHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHhc
Confidence            9999999999999988654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.16  E-value=3.7e-11  Score=116.72  Aligned_cols=93  Identities=24%  Similarity=0.463  Sum_probs=79.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|.+. +++.||+|++..... ..+.+.+|++++++++||||+++++++.     .....+
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~   81 (269)
T 4hcu_A            9 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPIC   81 (269)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSEE
T ss_pred             hhhceeeheecCCCccEEEEEEec-CCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCceE
Confidence            467999999999999999999996 577899999976433 3467899999999999999999999854     467889


Q ss_pred             eeecccccCCchhhhhcccc
Q 042887          127 LIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~  146 (628)
                      +||||+++|++.+++.....
T Consensus        82 lv~e~~~~~~L~~~l~~~~~  101 (269)
T 4hcu_A           82 LVFEFMEHGCLSDYLRTQRG  101 (269)
T ss_dssp             EEEECCTTCBHHHHHHTTTT
T ss_pred             EEEEeCCCCcHHHHHHhcCc
Confidence            99999999999999976543

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.16  E-value=2.2e-11  Score=129.74  Aligned_cols=95  Identities=21%  Similarity=0.288  Sum_probs=79.4

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-------------chhhhHHHHHHHHhhcCCCCccccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-------------GAAKSFVTECEALSNVRHRNLIKII  111 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~nIv~l~  111 (628)
                      ...+.|++.+.||+|+||.||+|++..+++.||+|++.....             ...+.+.+|+.++++++||||++++
T Consensus        33 ~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~  112 (504)
T 3q5i_A           33 KIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF  112 (504)
T ss_dssp             CGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             CcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            346789999999999999999999999999999999975421             2346789999999999999999999


Q ss_pred             ceeeeccccccceeeeeecccccCCchhhhhcc
Q 042887          112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       112 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      +++.     .....|+|||||++|+|.+++...
T Consensus       113 ~~~~-----~~~~~~lv~e~~~gg~L~~~l~~~  140 (504)
T 3q5i_A          113 DVFE-----DKKYFYLVTEFYEGGELFEQIINR  140 (504)
T ss_dssp             EEEE-----CSSEEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEE-----cCCEEEEEEecCCCCcHHHHHHHc
Confidence            9954     478899999999999999888654

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.16  E-value=2.8e-11  Score=128.89  Aligned_cols=94  Identities=21%  Similarity=0.309  Sum_probs=81.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....   ......+.+|+.+|+.++|||||++++++     ++..
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~-----~~~~  257 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAY-----ETKD  257 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEE-----eeCC
Confidence            467999999999999999999999999999999997642   23456688999999999999999999985     4578


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+||||++||+|.+++....
T Consensus       258 ~l~lVmEy~~gg~L~~~l~~~~  279 (576)
T 2acx_A          258 ALCLVLTLMNGGDLKFHIYHMG  279 (576)
T ss_dssp             EEEEEECCCCSCBHHHHHHSSS
T ss_pred             EEEEEEEcCCCCcHHHHHHhcC
Confidence            8999999999999999887543

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.16  E-value=3.5e-11  Score=120.01  Aligned_cols=92  Identities=24%  Similarity=0.511  Sum_probs=66.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++     ......
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~~~   78 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVI-----HTENKL   78 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEE-----CCTTEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEE-----EECCeE
Confidence            467999999999999999999999999999999997643 33456788999999999999999999995     447789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||++ |++.+++...
T Consensus        79 ~lv~e~~~-~~L~~~l~~~   96 (317)
T 2pmi_A           79 TLVFEFMD-NDLKKYMDSR   96 (317)
T ss_dssp             EEEEECCC-CBHHHHHHHH
T ss_pred             EEEEEecC-CCHHHHHHhc
Confidence            99999999 5898888654

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.16  E-value=3.9e-11  Score=117.25  Aligned_cols=95  Identities=17%  Similarity=0.311  Sum_probs=82.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|.+....  ....+.+.+|+.++++++||||+++++++..   +....
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~~   81 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID---RTNTT   81 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---GGGTE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEec---CCCce
Confidence            468999999999999999999999999999999997543  3345678999999999999999999998653   34678


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||+++|+|.+++...
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~  101 (279)
T 2w5a_A           82 LYIVMEYCEGGDLASVITKG  101 (279)
T ss_dssp             EEEEEECCTTEEHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHhh
Confidence            89999999999999998754

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.16  E-value=2.3e-11  Score=123.95  Aligned_cols=94  Identities=22%  Similarity=0.432  Sum_probs=79.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC-------CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceeeec
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG-------ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCSSI  117 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~-------~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~  117 (628)
                      .++|++.+.||+|+||.||+|++.       .++..||+|+++... ....+.+.+|+.+|+.+ +||||+++++++.  
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~--  157 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT--  157 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC--
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc--
Confidence            467889999999999999999974       345679999997643 34456799999999999 8999999999954  


Q ss_pred             cccccceeeeeecccccCCchhhhhccc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                         .....|+||||+++|+|.+++....
T Consensus       158 ---~~~~~~lv~e~~~~g~L~~~l~~~~  182 (370)
T 2psq_A          158 ---QDGPLYVIVEYASKGNLREYLRARR  182 (370)
T ss_dssp             ---SSSSCEEEEECCTTCBHHHHHHHTC
T ss_pred             ---cCCCEEEEEEcCCCCCHHHHHHhhC
Confidence               4778999999999999999997654

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.16  E-value=2.1e-11  Score=123.09  Aligned_cols=94  Identities=20%  Similarity=0.258  Sum_probs=81.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..++|++.+.||+|+||.||+|++..+|+.||+|+++...   ....+.+.+|..++..+ .||+|+++++++     ++
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----~~   92 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----QT   92 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEE-----EC
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEE-----Ec
Confidence            4578999999999999999999999899999999997642   33456788999999988 799999999984     45


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ....|+||||+++|+|.+++...
T Consensus        93 ~~~~~lv~E~~~gg~L~~~l~~~  115 (353)
T 2i0e_A           93 MDRLYFVMEYVNGGDLMYHIQQV  115 (353)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhc
Confidence            78899999999999999998754

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.15  E-value=4.4e-11  Score=117.21  Aligned_cols=93  Identities=18%  Similarity=0.353  Sum_probs=80.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|++....  ....+.+.+|+.++++++||||+++++++.     ....
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~   79 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EESF   79 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEE-----cCCE
Confidence            468999999999999999999999999999999997543  334567889999999999999999999854     4778


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||+++|++.+++...
T Consensus        80 ~~~v~e~~~~~~l~~~~~~~   99 (284)
T 3kk8_A           80 HYLVFDLVTGGELFEDIVAR   99 (284)
T ss_dssp             EEEEECCCCSCBHHHHHHHH
T ss_pred             EEEEEecCCCCCHHHHHHhc
Confidence            89999999999998887654

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.15  E-value=3.4e-11  Score=120.68  Aligned_cols=97  Identities=23%  Similarity=0.372  Sum_probs=83.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEE----CCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~----~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|++.+.||+|+||.||+|++    ..+++.||+|++........+.+.+|++++++++||||+++++++..   +..
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~   98 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG---PGR   98 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC---SSS
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec---CCC
Confidence            35799999999999999999994    56789999999987666566789999999999999999999998653   346


Q ss_pred             ceeeeeecccccCCchhhhhcccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ...++||||+++|+|.+++.....
T Consensus        99 ~~~~lv~e~~~~~~L~~~l~~~~~  122 (327)
T 3lxl_A           99 QSLRLVMEYLPSGCLRDFLQRHRA  122 (327)
T ss_dssp             CEEEEEEECCTTCBHHHHHHHHGG
T ss_pred             ceEEEEEeecCCCCHHHHHHhccc
Confidence            778999999999999999976443

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.15  E-value=1.1e-11  Score=121.85  Aligned_cols=97  Identities=24%  Similarity=0.469  Sum_probs=83.8

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ++....++|++.+.||+|+||.||+|.+..+++.||+|.+.... ...+.+.+|+.+++.++||||+++++++.     .
T Consensus         7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~   80 (288)
T 3kfa_A            7 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCT-----R   80 (288)
T ss_dssp             TTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEEC-----S
T ss_pred             cccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEc-----c
Confidence            44445678999999999999999999999889999999987543 34577899999999999999999999854     4


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ....++||||+++|+|.+++...
T Consensus        81 ~~~~~~v~e~~~~~~L~~~~~~~  103 (288)
T 3kfa_A           81 EPPFYIITEFMTYGNLLDYLREC  103 (288)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHC
T ss_pred             CCCEEEEEEcCCCCcHHHHHHhc
Confidence            77889999999999999999754

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.15  E-value=2e-11  Score=124.42  Aligned_cols=95  Identities=23%  Similarity=0.404  Sum_probs=79.1

Q ss_pred             HhCCCCcCceeecCCceeEEEEEE-----CCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~-----~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      ..++|++.+.||+|+||.||+|++     ..+++.||||+++.. .......+.+|+.++++++||||+++++++.    
T Consensus        69 ~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~----  144 (367)
T 3l9p_A           69 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----  144 (367)
T ss_dssp             CGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred             CHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEe----
Confidence            346789999999999999999994     346778999999654 3344567899999999999999999999954    


Q ss_pred             cccceeeeeecccccCCchhhhhccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       .....++|||||++|+|.+++....
T Consensus       145 -~~~~~~lv~e~~~~g~L~~~l~~~~  169 (367)
T 3l9p_A          145 -QSLPRFILLELMAGGDLKSFLRETR  169 (367)
T ss_dssp             -SSSSCEEEEECCTTEEHHHHHHHHS
T ss_pred             -cCCCCEEEEEeCCCCCHHHHHHhhc
Confidence             4677899999999999999997654

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.15  E-value=8.1e-11  Score=116.02  Aligned_cols=92  Identities=17%  Similarity=0.334  Sum_probs=78.1

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      +|.....||+|+||.||+|.+..+++.||+|.+........+.+.+|+.+++.++||||+++++++..     ....++|
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv   97 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSE-----NGFIKIF   97 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEEEEE
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEe-----CCcEEEE
Confidence            44555689999999999999999999999999987655556789999999999999999999998653     6789999


Q ss_pred             ecccccCCchhhhhccc
Q 042887          129 YEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~~  145 (628)
                      |||+++++|.+++....
T Consensus        98 ~e~~~~~~L~~~l~~~~  114 (295)
T 2clq_A           98 MEQVPGGSLSALLRSKW  114 (295)
T ss_dssp             EECCSEEEHHHHHHHTT
T ss_pred             EEeCCCCCHHHHHHhhc
Confidence            99999999999987643

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.15  E-value=2.4e-11  Score=121.72  Aligned_cols=93  Identities=22%  Similarity=0.304  Sum_probs=74.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      .++|++.+.||+|+||.||+|++.   .+|+.||+|+++...    ......+.+|+.+++.++||||+++++++.    
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----   91 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQ----   91 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEE----
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEE----
Confidence            467999999999999999999985   678999999997542    234456789999999999999999999854    


Q ss_pred             cccceeeeeecccccCCchhhhhcc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                       .....|+||||+++|+|.+++...
T Consensus        92 -~~~~~~lv~e~~~~~~L~~~l~~~  115 (327)
T 3a62_A           92 -TGGKLYLILEYLSGGELFMQLERE  115 (327)
T ss_dssp             -CSSCEEEEEECCTTEEHHHHHHHH
T ss_pred             -cCCEEEEEEeCCCCCcHHHHHHhC
Confidence             477899999999999999988654

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.15  E-value=3e-11  Score=128.05  Aligned_cols=94  Identities=26%  Similarity=0.319  Sum_probs=81.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++....  ......+.+|+.++++++||||+++++++.     ...
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~   94 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----DSS   94 (486)
T ss_dssp             HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred             hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEE-----cCC
Confidence            3467999999999999999999999999999999996532  334577899999999999999999999954     478


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+|||||++|+|.+++...
T Consensus        95 ~~~lv~e~~~~~~L~~~~~~~  115 (486)
T 3mwu_A           95 SFYIVGELYTGGELFDEIIKR  115 (486)
T ss_dssp             EEEEEECCCCSCBHHHHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHHHhc
Confidence            899999999999999888654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.15  E-value=2.2e-11  Score=119.41  Aligned_cols=99  Identities=22%  Similarity=0.417  Sum_probs=79.5

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .+....++|++.+.||+|+||.||+|.+. +++.||+|++..... ..+.+.+|++++++++||||+++++++.     .
T Consensus        18 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~   90 (283)
T 3gen_A           18 SWEIDPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCT-----K   90 (283)
T ss_dssp             TTBCCGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----S
T ss_pred             CccCCHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEe-----c
Confidence            34445678999999999999999999985 677899999976543 3467899999999999999999999854     4


Q ss_pred             cceeeeeecccccCCchhhhhccccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      ....++||||+++|+|.+++......
T Consensus        91 ~~~~~lv~e~~~~~~L~~~l~~~~~~  116 (283)
T 3gen_A           91 QRPIFIITEYMANGCLLNYLREMRHR  116 (283)
T ss_dssp             SSSEEEEECCCTTCBHHHHHHCGGGC
T ss_pred             CCCeEEEEeccCCCcHHHHHHHhccC
Confidence            77889999999999999999764433

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.15  E-value=3.7e-11  Score=122.20  Aligned_cols=93  Identities=18%  Similarity=0.291  Sum_probs=81.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++... .....+.+.+|+.++++++||||+++++++..     ....
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~  106 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DGEI  106 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEE-----TTEE
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEE-----CCEE
Confidence            46799999999999999999999999999999999765 33445678999999999999999999998654     6789


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|+|.+++...
T Consensus       107 ~lv~e~~~~~~L~~~l~~~  125 (360)
T 3eqc_A          107 SICMEHMDGGSLDQVLKKA  125 (360)
T ss_dssp             EEEECCCTTCBHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHc
Confidence            9999999999999998654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.15  E-value=2.4e-11  Score=128.91  Aligned_cols=97  Identities=24%  Similarity=0.476  Sum_probs=83.8

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .+....++|++.+.||+|+||.||+|.+..+++.||||.++.... ..+.|.+|+.+|++++|||||++++++.     .
T Consensus       214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~-----~  287 (495)
T 1opk_A          214 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCT-----R  287 (495)
T ss_dssp             CCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----S
T ss_pred             ccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEe-----c
Confidence            344556778999999999999999999988899999999976433 4578999999999999999999999964     3


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ....|+|||||++|+|.+++...
T Consensus       288 ~~~~~lv~E~~~~g~L~~~l~~~  310 (495)
T 1opk_A          288 EPPFYIITEFMTYGNLLDYLREC  310 (495)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHS
T ss_pred             CCcEEEEEEccCCCCHHHHHHhc
Confidence            67889999999999999999754

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.15  E-value=2.7e-11  Score=121.90  Aligned_cols=90  Identities=23%  Similarity=0.316  Sum_probs=77.6

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccce
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|++.....    ...+|++++.++ +||||+++++++     ++...
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~-----~~~~~   90 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVY-----DDGKY   90 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEE-----ECSSE
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEE-----EcCCE
Confidence            34679999999999999999999999999999999976432    345788888888 799999999985     45788


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+|||||++|+|.+++...
T Consensus        91 ~~lv~E~~~gg~L~~~i~~~  110 (342)
T 2qr7_A           91 VYVVTELMKGGELLDKILRQ  110 (342)
T ss_dssp             EEEEECCCCSCBHHHHHHTC
T ss_pred             EEEEEeCCCCCcHHHHHHHc
Confidence            99999999999999988654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.15  E-value=3.1e-11  Score=128.21  Aligned_cols=94  Identities=18%  Similarity=0.245  Sum_probs=77.6

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..+.|++.+.||+|+||.||+|++..+++.||+|++....  ......+.+|+.+++.++||||+++++++.     ...
T Consensus        35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~  109 (494)
T 3lij_A           35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFE-----DKR  109 (494)
T ss_dssp             HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred             hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCC
Confidence            3457999999999999999999999999999999997643  334567899999999999999999999954     478


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+|||||++|+|.+++...
T Consensus       110 ~~~lv~e~~~~g~L~~~~~~~  130 (494)
T 3lij_A          110 NYYLVMECYKGGELFDEIIHR  130 (494)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH
T ss_pred             EEEEEEecCCCCcHHHHHHHc
Confidence            899999999999998888654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.14  E-value=5.4e-11  Score=117.11  Aligned_cols=91  Identities=24%  Similarity=0.455  Sum_probs=76.9

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||+|++....  ....+.+.+|+.++++++||||+++++++.     .....
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~   76 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH-----SDKKL   76 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEE-----eCCEE
Confidence            57999999999999999999999999999999997543  334567889999999999999999999954     47889


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++ ++.+++...
T Consensus        77 ~lv~e~~~~-~l~~~~~~~   94 (292)
T 3o0g_A           77 TLVFEFCDQ-DLKKYFDSC   94 (292)
T ss_dssp             EEEEECCSE-EHHHHHHHT
T ss_pred             EEEEecCCC-CHHHHHHhC
Confidence            999999986 555555443

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.14  E-value=1.8e-11  Score=121.77  Aligned_cols=97  Identities=15%  Similarity=0.232  Sum_probs=80.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....   ......+.+|+.++++++||||+++++++.... ....
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~~   89 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PAGP   89 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE-TTEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC-CCCc
Confidence            468999999999999999999999999999999997642   233457889999999999999999999865411 1123


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..|+||||+++|+|.+++...
T Consensus        90 ~~~lv~e~~~g~~L~~~l~~~  110 (311)
T 3ork_A           90 LPYIVMEYVDGVTLRDIVHTE  110 (311)
T ss_dssp             EEEEEEECCCEEEHHHHHHHH
T ss_pred             ccEEEEecCCCCCHHHHHHhc
Confidence            459999999999999998654

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.14  E-value=2.5e-11  Score=121.80  Aligned_cols=97  Identities=26%  Similarity=0.456  Sum_probs=78.0

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .....++|++.+.||+|+||.||+|++..+++.||+|++....  ....+.+.+|+.++++++||||+++++++.     
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----  103 (329)
T 3gbz_A           29 SATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIH-----  103 (329)
T ss_dssp             ---CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEE-----
T ss_pred             cccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEe-----
Confidence            3445678999999999999999999999999999999997543  233567889999999999999999999954     


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .....++||||+++ ++.+++....
T Consensus       104 ~~~~~~lv~e~~~~-~L~~~~~~~~  127 (329)
T 3gbz_A          104 HNHRLHLIFEYAEN-DLKKYMDKNP  127 (329)
T ss_dssp             ETTEEEEEEECCSE-EHHHHHHHCT
T ss_pred             cCCEEEEEEecCCC-CHHHHHhhcC
Confidence            47889999999985 8988886543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.14  E-value=3.9e-11  Score=117.25  Aligned_cols=95  Identities=21%  Similarity=0.438  Sum_probs=82.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..++|++.+.||+|+||.||+|++..+|+.||+|++....   ....+.+.+|+.++++++||||+++++++.     ..
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~   83 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFE-----DS   83 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEE-----CS
T ss_pred             ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEc-----cC
Confidence            3467999999999999999999999899999999997542   223467899999999999999999999854     47


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ...++||||++++++.+++....
T Consensus        84 ~~~~lv~e~~~~~~L~~~l~~~~  106 (278)
T 3cok_A           84 NYVYLVLEMCHNGEMNRYLKNRV  106 (278)
T ss_dssp             SEEEEEEECCTTEEHHHHHHTCS
T ss_pred             CeEEEEEecCCCCcHHHHHhhcc
Confidence            78999999999999999987654

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.14  E-value=3.4e-11  Score=121.08  Aligned_cols=99  Identities=21%  Similarity=0.394  Sum_probs=83.3

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCc-----EEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGT-----TVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVC  114 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~-----~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~  114 (628)
                      .+....++|++.+.||+|+||.||+|.+..+++     .||+|.+.... ....+.+.+|+.+++.+ +||||+++++++
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  119 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC  119 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            445566889999999999999999999976654     79999997643 33456789999999999 899999999985


Q ss_pred             eeccccccceeeeeecccccCCchhhhhccc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .     .....++||||+++|+|.+++....
T Consensus       120 ~-----~~~~~~lv~e~~~~g~L~~~l~~~~  145 (333)
T 2i1m_A          120 T-----HGGPVLVITEYCCYGDLLNFLRRKS  145 (333)
T ss_dssp             C-----SSSSCEEEEECCTTEEHHHHHHHHH
T ss_pred             e-----cCCceEEEEecCCCCcHHHHHHHhc
Confidence            4     4678999999999999999997654

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.14  E-value=3.6e-11  Score=121.38  Aligned_cols=97  Identities=26%  Similarity=0.464  Sum_probs=82.3

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSI  117 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~  117 (628)
                      ....++|++.+.||+|+||.||+|++.     .+++.||+|+++... ....+.+.+|+.++++++||||+++++++.  
T Consensus        43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--  120 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA--  120 (343)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC--
T ss_pred             EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--
Confidence            345688999999999999999999986     345889999997643 334567999999999999999999999954  


Q ss_pred             cccccceeeeeecccccCCchhhhhccc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                         .....++||||+++|+|.+++....
T Consensus       121 ---~~~~~~lv~e~~~~~~L~~~l~~~~  145 (343)
T 1luf_A          121 ---VGKPMCLLFEYMAYGDLNEFLRSMS  145 (343)
T ss_dssp             ---SSSSCEEEEECCTTCBHHHHHHHTC
T ss_pred             ---cCCceEEEEecCCCCcHHHHHHHhC
Confidence               4678899999999999999997643

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.14  E-value=4e-11  Score=119.61  Aligned_cols=97  Identities=14%  Similarity=0.209  Sum_probs=81.5

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|++.+.||+|+||.||+|++..+|+.||+|++........+.+.+|+.+++.++||||+++++++... .......
T Consensus        27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~  105 (317)
T 2buj_A           27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRE-RGAKHEA  105 (317)
T ss_dssp             TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE-ETTEEEE
T ss_pred             CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec-cCCCcee
Confidence            346799999999999999999999999999999999766555667899999999999999999999987531 1234678


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      ++||||+++|+|.+++..
T Consensus       106 ~lv~e~~~~~~L~~~l~~  123 (317)
T 2buj_A          106 WLLLPFFKRGTLWNEIER  123 (317)
T ss_dssp             EEEEECCTTCBHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHH
Confidence            999999999999998875

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.13  E-value=6e-11  Score=117.94  Aligned_cols=93  Identities=24%  Similarity=0.369  Sum_probs=79.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....  ....+.+.+|+.++++++||||+++++++.     ....
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~   76 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFR-----RKRR   76 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheee-----cCCe
Confidence            367999999999999999999999999999999986543  233567889999999999999999999965     3778


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||++++++.+++...
T Consensus        77 ~~lv~e~~~~~~l~~~~~~~   96 (311)
T 4agu_A           77 LHLVFEYCDHTVLHELDRYQ   96 (311)
T ss_dssp             EEEEEECCSEEHHHHHHHTS
T ss_pred             EEEEEEeCCCchHHHHHhhh
Confidence            99999999999998877543

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.13  E-value=5.7e-11  Score=115.35  Aligned_cols=93  Identities=23%  Similarity=0.393  Sum_probs=79.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|.+. ++..||+|++..... ..+.+.+|+.++++++||||+++++++     ......+
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~-----~~~~~~~   79 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVC-----SKEYPIY   79 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEE-----CSSSSEE
T ss_pred             hhheeeeeeeccCCCceEEEEEec-CceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEE-----ccCCceE
Confidence            567999999999999999999885 567899999976443 346789999999999999999999985     4477889


Q ss_pred             eeecccccCCchhhhhcccc
Q 042887          127 LIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~  146 (628)
                      +||||+++|++.+++.....
T Consensus        80 lv~e~~~~~~L~~~l~~~~~   99 (268)
T 3sxs_A           80 IVTEYISNGCLLNYLRSHGK   99 (268)
T ss_dssp             EEEECCTTCBHHHHHHHHGG
T ss_pred             EEEEccCCCcHHHHHHHcCC
Confidence            99999999999999976543

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.13  E-value=2e-11  Score=121.56  Aligned_cols=96  Identities=30%  Similarity=0.426  Sum_probs=81.2

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSID  118 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~  118 (628)
                      ...++|.+.+.||+|+||.||+|.+.     .+++.||+|++.... ....+.+.+|+.++++++||||+++++++.   
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---   96 (314)
T 2ivs_A           20 FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS---   96 (314)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC---
T ss_pred             cchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEe---
Confidence            34578999999999999999999973     455889999997543 344577899999999999999999999854   


Q ss_pred             ccccceeeeeecccccCCchhhhhccc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                        .....++||||+++|+|.+++....
T Consensus        97 --~~~~~~lv~e~~~~~~L~~~l~~~~  121 (314)
T 2ivs_A           97 --QDGPLLLIVEYAKYGSLRGFLRESR  121 (314)
T ss_dssp             --SSSSCEEEEECCTTCBHHHHHHHTT
T ss_pred             --cCCceEEEEeecCCCCHHHHHHHHh
Confidence              4778999999999999999997654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.13  E-value=5e-11  Score=119.22  Aligned_cols=84  Identities=21%  Similarity=0.304  Sum_probs=73.8

Q ss_pred             CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccceeeeeecc
Q 042887           53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFKALIYEY  131 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~~lv~e~  131 (628)
                      .+.||+|+||.||+|.+..+|+.||+|++...   ....+.+|+.+++.+. ||||+++++++.     +....|+||||
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~-----~~~~~~lv~e~   87 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFH-----DQLHTFLVMEL   87 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSEEEEEECC
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEE-----cCCEEEEEEEc
Confidence            37899999999999999999999999998653   3356789999999997 999999999954     47889999999


Q ss_pred             cccCCchhhhhcc
Q 042887          132 MKCGSSEDWMHQS  144 (628)
Q Consensus       132 ~~~g~L~~~l~~~  144 (628)
                      +++|+|.+++...
T Consensus        88 ~~~~~L~~~l~~~  100 (325)
T 3kn6_A           88 LNGGELFERIKKK  100 (325)
T ss_dssp             CCSCBHHHHHHHC
T ss_pred             cCCCcHHHHHHhc
Confidence            9999999998754

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.13  E-value=4.6e-11  Score=126.83  Aligned_cols=92  Identities=21%  Similarity=0.298  Sum_probs=80.4

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||+|++....   ......+.+|+.++++++||||+++++++     ++...
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~-----~~~~~  259 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAF-----ETKTD  259 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSSE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEE-----eeCCE
Confidence            67888899999999999999999999999999997542   23456788999999999999999999984     45788


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+||||++||+|.+++...
T Consensus       260 l~lVmE~~~gg~L~~~l~~~  279 (543)
T 3c4z_A          260 LCLVMTIMNGGDIRYHIYNV  279 (543)
T ss_dssp             EEEEECCCTTCBHHHHHHTS
T ss_pred             EEEEEEeccCCCHHHHHHHh
Confidence            99999999999999988654

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.13  E-value=4.5e-11  Score=126.75  Aligned_cols=94  Identities=27%  Similarity=0.373  Sum_probs=81.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....   ....+.+.+|+.++++++||||+++++++.     ...
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~   99 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFE-----DKG   99 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence            457999999999999999999999999999999996542   334577999999999999999999999954     478


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+|||||.+|++.+++....
T Consensus       100 ~~~lv~e~~~~~~L~~~~~~~~  121 (484)
T 3nyv_A          100 YFYLVGEVYTGGELFDEIISRK  121 (484)
T ss_dssp             EEEEEECCCCSCBHHHHHHTCS
T ss_pred             EEEEEEecCCCCCHHHHHHhcC
Confidence            8999999999999998886543

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.13  E-value=5.6e-11  Score=116.42  Aligned_cols=91  Identities=22%  Similarity=0.370  Sum_probs=79.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||+|++.....      ...+.+.+|+.++++++||||+++++++.     .
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~   79 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFE-----N   79 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----C
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheec-----C
Confidence            568999999999999999999998999999999975421      23567899999999999999999999854     4


Q ss_pred             cceeeeeecccccCCchhhhhc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ....++||||+++++|.+++..
T Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~  101 (283)
T 3bhy_A           80 KTDVVLILELVSGGELFDFLAE  101 (283)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHH
T ss_pred             CCeEEEEEeecCCCcHHHHHHh
Confidence            6789999999999999999864

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.13  E-value=6.5e-11  Score=116.23  Aligned_cols=93  Identities=23%  Similarity=0.305  Sum_probs=81.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++...  .......+.+|+..+..+ +||||+++++++.+     .+
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~-----~~   84 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAE-----DD   84 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEE-----TT
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeec-----CC
Confidence            45799999999999999999999989999999999764  233456788999999999 89999999998654     77


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++||||+++|+|.+++...
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~  105 (289)
T 1x8b_A           85 HMLIQNEYCNGGSLADAISEN  105 (289)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH
T ss_pred             eEEEEEEecCCCcHHHHHHhh
Confidence            899999999999999999754

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.13  E-value=1.4e-10  Score=115.04  Aligned_cols=104  Identities=35%  Similarity=0.543  Sum_probs=87.5

Q ss_pred             CCCcccHHHHHHHhCCCCcC------ceeecCCceeEEEEEECCCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcC
Q 042887           34 QFPMVSYADLSKATNNFSAS------NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVR  103 (628)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~------~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~  103 (628)
                      ..+.+++.+....+++|...      +.||+|+||.||+|.+  +++.||+|.+....    ....+.+.+|+.+++.++
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~   88 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQ   88 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcC
Confidence            35667888888888888766      8999999999999987  68899999986532    234567899999999999


Q ss_pred             CCCcccccceeeeccccccceeeeeecccccCCchhhhhcc
Q 042887          104 HRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       104 h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ||||+++++++.     .....++||||+++|++.+++...
T Consensus        89 h~~i~~~~~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~  124 (307)
T 2nru_A           89 HENLVELLGFSS-----DGDDLCLVYVYMPNGSLLDRLSCL  124 (307)
T ss_dssp             CTTBCCEEEEEC-----SSSSCEEEEECCTTCBHHHHHHTG
T ss_pred             CCCeEEEEEEEe-----cCCceEEEEEecCCCcHHHHHHhc
Confidence            999999999854     467889999999999999998643

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.13  E-value=5.2e-11  Score=116.92  Aligned_cols=94  Identities=26%  Similarity=0.459  Sum_probs=78.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-------chhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++.....       ...+.+.+|+.++++++||||+++++++.    
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~----   93 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMH----   93 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEET----
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeec----
Confidence            4679999999999999999999999999999999865422       11267899999999999999999999853    


Q ss_pred             cccceeeeeecccccCCchhhhhccccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                       ..  .++||||+++|++.+++.+....
T Consensus        94 -~~--~~lv~e~~~~~~L~~~l~~~~~~  118 (287)
T 4f0f_A           94 -NP--PRMVMEFVPCGDLYHRLLDKAHP  118 (287)
T ss_dssp             -TT--TEEEEECCTTCBHHHHHHCTTSC
T ss_pred             -CC--CeEEEEecCCCCHHHHHhcccCC
Confidence             22  36999999999999888665433

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.13  E-value=2.5e-11  Score=123.46  Aligned_cols=94  Identities=26%  Similarity=0.358  Sum_probs=72.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHH-HhhcCCCCcccccceeeeccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEA-LSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~-l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++++..   ......+.+|..+ ++.++||||+++++++     .+
T Consensus        36 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~-----~~  110 (373)
T 2r5t_A           36 KPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSF-----QT  110 (373)
T ss_dssp             CGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEE-----EC
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEE-----Ee
Confidence            3467999999999999999999999999999999997643   2334566777776 5778999999999985     45


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ....|+||||+++|+|.+++.+.
T Consensus       111 ~~~~~lv~E~~~gg~L~~~l~~~  133 (373)
T 2r5t_A          111 ADKLYFVLDYINGGELFYHLQRE  133 (373)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhc
Confidence            78999999999999999988654

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.12  E-value=4.9e-11  Score=125.51  Aligned_cols=97  Identities=18%  Similarity=0.282  Sum_probs=73.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||||++...  .....+++.+|+.+|++++|||||++++++....++....
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            36799999999999999999999999999999999653  2344577899999999999999999999976544455678


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+||||+. |++.+++...
T Consensus       132 ~~lv~e~~~-~~L~~~~~~~  150 (458)
T 3rp9_A          132 LYVVLEIAD-SDFKKLFRTP  150 (458)
T ss_dssp             EEEEECCCS-EEHHHHHHSS
T ss_pred             EEEEEeccc-cchhhhcccC
Confidence            999999985 6888888654

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.12  E-value=3.7e-11  Score=116.81  Aligned_cols=94  Identities=22%  Similarity=0.459  Sum_probs=79.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|++  .++.||+|++....  ....+.+.+|+.++++++||||+++++++.+   .....
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~   83 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRW--QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQS---PPAPH   83 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECT---TTSSS
T ss_pred             HHHhHHHHHhcCCCcceEEEEEE--CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEcc---CCCCC
Confidence            46799999999999999999999  58899999997643  3345679999999999999999999998653   22377


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .++||||+++|+|.+++....
T Consensus        84 ~~lv~e~~~~~~L~~~l~~~~  104 (271)
T 3kmu_A           84 PTLITHWMPYGSLYNVLHEGT  104 (271)
T ss_dssp             CEEEEECCTTCBHHHHHHSCS
T ss_pred             eEeeecccCCCcHHHHHhhcc
Confidence            899999999999999997644

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.12  E-value=7.3e-11  Score=115.12  Aligned_cols=93  Identities=20%  Similarity=0.298  Sum_probs=80.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+     ....
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~   80 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-----GNIQ   80 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEc-----CCEE
Confidence            467999999999999999999999899999999997543 3345778999999999999999999998643     6788


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++++|.+++...
T Consensus        81 ~lv~e~~~~~~L~~~l~~~   99 (276)
T 2yex_A           81 YLFLEYCSGGELFDRIEPD   99 (276)
T ss_dssp             EEEEECCTTEEGGGGSBTT
T ss_pred             EEEEEecCCCcHHHHHhhc
Confidence            9999999999999988643

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.12  E-value=7.1e-11  Score=115.19  Aligned_cols=93  Identities=27%  Similarity=0.396  Sum_probs=81.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....   ....+.+.+|+.+++.++||||+++++++.     ...
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~   84 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIS-----TPT   84 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEe-----cCC
Confidence            468999999999999999999999899999999997542   234567899999999999999999999854     467


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++||||+++++|.+++...
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~  105 (276)
T 2h6d_A           85 DFFMVMEYVSGGELFDYICKH  105 (276)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH
T ss_pred             eEEEEEeccCCCcHHHHHhcc
Confidence            899999999999999998654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.12  E-value=6.2e-11  Score=124.15  Aligned_cols=93  Identities=28%  Similarity=0.470  Sum_probs=79.7

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ...++|++.+.||+|+||.||+|.+  .|+.||||+++...  ..+.|.+|+.+|++++||||+++++++..    ....
T Consensus       190 i~~~~~~~~~~lG~G~fg~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~  261 (450)
T 1k9a_A          190 LNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGG  261 (450)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEEC----TTSC
T ss_pred             cChHHeEEEeeecCcCCeeEEEEEe--cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEc----CCCc
Confidence            3457889999999999999999999  47899999997543  45789999999999999999999998653    3447


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+|||||++|+|.+++....
T Consensus       262 ~~iv~e~~~~g~L~~~l~~~~  282 (450)
T 1k9a_A          262 LYIVTEYMAKGSLVDYLRSRG  282 (450)
T ss_dssp             EEEEEECCTTCBHHHHHHHHC
T ss_pred             eEEEEEecCCCcHHHHHHhcC
Confidence            899999999999999997653

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.12  E-value=5.7e-11  Score=118.97  Aligned_cols=97  Identities=30%  Similarity=0.497  Sum_probs=80.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEE----CCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~----~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|++.+.||+|+||.||+|++    ..+|+.||+|++........+.+.+|+.++++++||||+++++++..   ...
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~  116 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGR  116 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEe---cCC
Confidence            45689999999999999999994    56789999999987665566789999999999999999999998653   224


Q ss_pred             ceeeeeecccccCCchhhhhcccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ...++||||+++|+|.+++.....
T Consensus       117 ~~~~lv~e~~~~~~L~~~l~~~~~  140 (326)
T 2w1i_A          117 RNLKLIMEYLPYGSLRDYLQKHKE  140 (326)
T ss_dssp             -CCEEEECCCTTCBHHHHHHHSTT
T ss_pred             CceEEEEECCCCCCHHHHHHhccc
Confidence            578999999999999999976543

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.12  E-value=6.2e-11  Score=119.19  Aligned_cols=94  Identities=13%  Similarity=0.204  Sum_probs=81.5

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..++|.+.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.+++.++||||+++++++.     ..
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~  113 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DN  113 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CS
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cC
Confidence            3567999999999999999999999999999999997542   334567899999999999999999999854     47


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...|+||||++++++.+++...
T Consensus       114 ~~~~lv~e~~~~~~L~~~~~~~  135 (335)
T 2owb_A          114 DFVFVVLELCRRRSLLELHKRR  135 (335)
T ss_dssp             SEEEEEECCCTTCBHHHHHHHH
T ss_pred             CeEEEEEecCCCCCHHHHHhcc
Confidence            7899999999999999987653

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.12  E-value=6.5e-11  Score=116.68  Aligned_cols=93  Identities=13%  Similarity=0.203  Sum_probs=80.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++....   ....+.+.+|+.+++.++||||+++++++.     ..+
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~   88 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DND   88 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeec-----cCC
Confidence            467999999999999999999999999999999997542   334567889999999999999999999954     477


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++||||++++++.+++...
T Consensus        89 ~~~lv~e~~~~~~L~~~~~~~  109 (294)
T 2rku_A           89 FVFVVLELCRRRSLLELHKRR  109 (294)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEEecCCCCCHHHHHHhc
Confidence            899999999999999887643

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.12  E-value=5.2e-11  Score=116.40  Aligned_cols=94  Identities=26%  Similarity=0.384  Sum_probs=81.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++....   ......+.+|+.++++++||||+++++++.     ..
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~   81 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH-----DA   81 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CS
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEe-----cC
Confidence            3567999999999999999999999999999999996542   233467889999999999999999999954     47


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...++||||+++|++.+++...
T Consensus        82 ~~~~lv~e~~~~~~l~~~l~~~  103 (279)
T 3fdn_A           82 TRVYLILEYAPLGTVYRELQKL  103 (279)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHH
T ss_pred             CEEEEEEecCCCCcHHHHHHhc
Confidence            7899999999999999988654

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.12  E-value=7.4e-11  Score=116.71  Aligned_cols=98  Identities=20%  Similarity=0.328  Sum_probs=81.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeec--------c
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSI--------D  118 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~--------~  118 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|.+.... ...+.+.+|+.++++++||||+++++++.+.        .
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA   83 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccH-HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence            457999999999999999999999999999999996532 3456789999999999999999999987541        1


Q ss_pred             ccccceeeeeecccccCCchhhhhccc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .......|+||||+++|+|.+++....
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~  110 (303)
T 1zy4_A           84 VKKKSTLFIQMEYCENGTLYDLIHSEN  110 (303)
T ss_dssp             --CEEEEEEEEECCCSCBHHHHHHHSC
T ss_pred             cccCCceEEEEecCCCCCHHHhhhccc
Confidence            133578899999999999999997544

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.12  E-value=7.9e-11  Score=116.29  Aligned_cols=94  Identities=21%  Similarity=0.359  Sum_probs=80.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---------cchhhhHHHHHHHHhhcC-CCCcccccceee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---------KGAAKSFVTECEALSNVR-HRNLIKIITVCS  115 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---------~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~  115 (628)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|++....         ....+.+.+|+.+++++. ||||+++++++.
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   94 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence            3578999999999999999999999999999999997542         123456889999999996 999999999854


Q ss_pred             eccccccceeeeeecccccCCchhhhhcc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                           .....++||||+++|+|.+++...
T Consensus        95 -----~~~~~~lv~e~~~~~~L~~~l~~~  118 (298)
T 1phk_A           95 -----TNTFFFLVFDLMKKGELFDYLTEK  118 (298)
T ss_dssp             -----CSSEEEEEEECCTTCBHHHHHHHH
T ss_pred             -----cCCeEEEEEeccCCCcHHHHHhcc
Confidence                 478899999999999999998653

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.11  E-value=6.3e-11  Score=117.27  Aligned_cols=97  Identities=26%  Similarity=0.423  Sum_probs=77.8

Q ss_pred             hCCCCcCceeecCCceeEEEEE----ECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGK----LGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~----~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .+.|++.+.||+|+||.||+|+    ...+++.||+|++.... ....+.+.+|+.+++.++||||+++++++..   ..
T Consensus        20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~   96 (302)
T 4e5w_A           20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE---DG   96 (302)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred             hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEec---CC
Confidence            3458899999999999999999    45678999999997543 3345778999999999999999999998753   23


Q ss_pred             cceeeeeecccccCCchhhhhcccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ....++||||+++|+|.+++.....
T Consensus        97 ~~~~~lv~e~~~~~~L~~~l~~~~~  121 (302)
T 4e5w_A           97 GNGIKLIMEFLPSGSLKEYLPKNKN  121 (302)
T ss_dssp             -CCEEEEEECCTTCBHHHHHHHHTT
T ss_pred             CceEEEEEEeCCCCcHHHHHHhccc
Confidence            3678999999999999999965443

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.11  E-value=7.4e-11  Score=122.95  Aligned_cols=97  Identities=21%  Similarity=0.331  Sum_probs=81.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||||++...  .....+++.+|+.+|++++||||+++++++....+.....
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            46899999999999999999999999999999999753  2344578899999999999999999999976533334477


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+||||+. |+|.+++...
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~  123 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTP  123 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSS
T ss_pred             EEEEEecCC-cCHHHHHhcc
Confidence            999999987 5899888654

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.11  E-value=3.2e-11  Score=126.36  Aligned_cols=93  Identities=26%  Similarity=0.324  Sum_probs=72.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|++...   .......+.+|+.+++.++||||+++++++..     ..
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-----~~  221 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-----HD  221 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEE-----TT
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEee-----CC
Confidence            46799999999999999999999999999999999753   23345678899999999999999999999654     67


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++|||||++|+|.+++...
T Consensus       222 ~~~lv~e~~~~~~L~~~l~~~  242 (446)
T 4ejn_A          222 RLCFVMEYANGGELFFHLSRE  242 (446)
T ss_dssp             EEEEEECCCSSCBHHHHHHHH
T ss_pred             EEEEEEeeCCCCcHHHHHHhc
Confidence            899999999999999888653

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.11  E-value=6e-11  Score=118.58  Aligned_cols=95  Identities=22%  Similarity=0.286  Sum_probs=77.3

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|++.+.||+|+||.||+|++  .++.||||++..... ....+.+|+.++++++||||+++++++.... ......
T Consensus        22 ~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~~~~~   97 (322)
T 3soc_A           22 QSMPLQLLEVKARGRFGCVWKAQL--LNEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGT-SVDVDL   97 (322)
T ss_dssp             TTEEEEEEEEEECSTTCEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEE
T ss_pred             chhhchhhheecccCceEEEEEEE--CCCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCC-CCCceE
Confidence            456899999999999999999998  479999999975432 3345677999999999999999999976421 113457


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++|||||++|+|.+++...
T Consensus        98 ~lv~e~~~~g~L~~~l~~~  116 (322)
T 3soc_A           98 WLITAFHEKGSLSDFLKAN  116 (322)
T ss_dssp             EEEEECCTTCBHHHHHHHC
T ss_pred             EEEEecCCCCCHHHHHHhc
Confidence            9999999999999999653

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.10  E-value=1e-10  Score=116.27  Aligned_cols=93  Identities=23%  Similarity=0.335  Sum_probs=79.1

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|++...   .....+.+.+|+.++++++||||+++++++..     .
T Consensus        30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~  104 (310)
T 2wqm_A           30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-----D  104 (310)
T ss_dssp             SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----T
T ss_pred             cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----C
Confidence            346799999999999999999999989999999999753   23345678999999999999999999998654     6


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...++||||+++|+|.+++..
T Consensus       105 ~~~~lv~e~~~~~~L~~~l~~  125 (310)
T 2wqm_A          105 NELNIVLELADAGDLSRMIKH  125 (310)
T ss_dssp             TEEEEEEECCCSCBHHHHHHH
T ss_pred             CcEEEEEecCCCCCHHHHHHH
Confidence            789999999999999998864

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.10  E-value=7.6e-11  Score=115.79  Aligned_cols=91  Identities=23%  Similarity=0.464  Sum_probs=77.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|++ .+|+.||+|.+....  ....+.+.+|+.++++++||||+++++++.     .....
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~   75 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-----TKKRL   75 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEE-----CSSCE
T ss_pred             ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEc-----cCCeE
Confidence            5799999999999999999999 678999999996543  233467889999999999999999999954     46789


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||+++ ++.+++....
T Consensus        76 ~lv~e~~~~-~l~~~~~~~~   94 (288)
T 1ob3_A           76 VLVFEHLDQ-DLKKLLDVCE   94 (288)
T ss_dssp             EEEEECCSE-EHHHHHHTST
T ss_pred             EEEEEecCC-CHHHHHHhcc
Confidence            999999986 8888876543

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.10  E-value=9.1e-11  Score=116.50  Aligned_cols=95  Identities=12%  Similarity=0.133  Sum_probs=81.0

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ...++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.++++++||||+++++++..     
T Consensus        31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----  105 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEI-----  105 (309)
T ss_dssp             ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----
T ss_pred             cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEee-----
Confidence            34588999999999999999999999899999999997542   2234678999999999999999999998643     


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ....|+||||+++++|.+++...
T Consensus       106 ~~~~~lv~e~~~~~~L~~~l~~~  128 (309)
T 2h34_A          106 DGQLYVDMRLINGVDLAAMLRRQ  128 (309)
T ss_dssp             TTEEEEEEECCCCEEHHHHHHHH
T ss_pred             CCeEEEEEEecCCCCHHHHHHhc
Confidence            67899999999999999998754

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.10  E-value=1.4e-10  Score=114.83  Aligned_cols=92  Identities=27%  Similarity=0.371  Sum_probs=80.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .+.|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++..     ....
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~   95 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----DTKL   95 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----CCeE
Confidence            456999999999999999999999999999999997653 3345778999999999999999999998654     6788


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      ++||||++++++.+++..
T Consensus        96 ~lv~e~~~~~~L~~~~~~  113 (303)
T 3a7i_A           96 WIIMEYLGGGSALDLLEP  113 (303)
T ss_dssp             EEEEECCTTEEHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHhc
Confidence            999999999999998864

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.10  E-value=1.5e-10  Score=113.84  Aligned_cols=96  Identities=28%  Similarity=0.393  Sum_probs=80.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..|.+.+.||+|+||.||+|.+..+++.||+|.+....  ....+.+.+|+.++++++||||+++++++... .......
T Consensus        26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~  104 (290)
T 1t4h_A           26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCI  104 (290)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEE
T ss_pred             eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccc-cCCCceE
Confidence            34788889999999999999999999999999987542  34456789999999999999999999986541 2335678


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++||||+++|+|.+++...
T Consensus       105 ~lv~e~~~~~~L~~~l~~~  123 (290)
T 1t4h_A          105 VLVTELMTSGTLKTYLKRF  123 (290)
T ss_dssp             EEEEECCCSCBHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHc
Confidence            9999999999999998653

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.09  E-value=9.4e-11  Score=116.48  Aligned_cols=94  Identities=23%  Similarity=0.484  Sum_probs=76.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..++|++.+.||+|+||.||+|++. +|+.||+|++....  ....+.+.+|+.++++++||||+++++++     ....
T Consensus        19 l~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~   92 (311)
T 3niz_A           19 LMEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI-----HSER   92 (311)
T ss_dssp             SSCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEE-----CCSS
T ss_pred             hHhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEE-----ccCC
Confidence            3578999999999999999999994 58999999996542  33456788999999999999999999995     4477


Q ss_pred             eeeeeecccccCCchhhhhcccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ..++||||+++ ++.+++.....
T Consensus        93 ~~~lv~e~~~~-~l~~~~~~~~~  114 (311)
T 3niz_A           93 CLTLVFEFMEK-DLKKVLDENKT  114 (311)
T ss_dssp             CEEEEEECCSE-EHHHHHHTCTT
T ss_pred             EEEEEEcCCCC-CHHHHHHhccC
Confidence            89999999985 77777765443

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.09  E-value=7.7e-11  Score=115.50  Aligned_cols=93  Identities=23%  Similarity=0.368  Sum_probs=80.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....   ....+.+.+|+++++.++||||+++++++.     ...
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~   87 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFH-----DRK   87 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEE-----cCC
Confidence            467999999999999999999999899999999996542   233467899999999999999999999954     477


Q ss_pred             eeeeeecccccCCchhhhhcc
Q 042887          124 FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ..++||||+++|++.+++...
T Consensus        88 ~~~lv~e~~~~~~L~~~l~~~  108 (284)
T 2vgo_A           88 RIYLMLEFAPRGELYKELQKH  108 (284)
T ss_dssp             EEEEEECCCTTEEHHHHHHHH
T ss_pred             EEEEEEEeCCCCcHHHHHHhc
Confidence            899999999999999988654

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.09  E-value=1.1e-10  Score=114.60  Aligned_cols=96  Identities=25%  Similarity=0.314  Sum_probs=82.6

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ....++|++.+.||+|+||.||+|++..+++.||+|++....  ....+.+.+|+.++++++||||+++++++.     .
T Consensus        18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~   92 (287)
T 2wei_A           18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----D   92 (287)
T ss_dssp             HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----C
T ss_pred             HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEe-----C
Confidence            344578999999999999999999999899999999997543  334567899999999999999999999854     4


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ....++||||++++++.+++...
T Consensus        93 ~~~~~lv~e~~~~~~L~~~l~~~  115 (287)
T 2wei_A           93 SSSFYIVGELYTGGELFDEIIKR  115 (287)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHH
T ss_pred             CCeEEEEEEccCCCCHHHHHHhc
Confidence            67899999999999998887643

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.09  E-value=5.7e-11  Score=120.01  Aligned_cols=101  Identities=21%  Similarity=0.415  Sum_probs=81.9

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeecc-ccchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLK-QKGAAKSFVTECEALSNV-RHRNLIKIITVC  114 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~  114 (628)
                      ++....++|++.+.||+|+||.||+|.+.     .+++.||+|++... .....+.+.+|+.+++++ .||||+++++++
T Consensus        39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  118 (344)
T 1rjb_A           39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC  118 (344)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            34455688999999999999999999973     35678999999754 234557899999999999 899999999985


Q ss_pred             eeccccccceeeeeecccccCCchhhhhccccc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      .     .....++||||+++|+|.+++......
T Consensus       119 ~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~  146 (344)
T 1rjb_A          119 T-----LSGPIYLIFEYCCYGDLLNYLRSKREK  146 (344)
T ss_dssp             C-----SSSSCEEEEECCTTCBHHHHHHTTTTC
T ss_pred             e-----eCCccEEEEecCCCCcHHHHHhhcccc
Confidence            4     467899999999999999999876544

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.08  E-value=9.5e-11  Score=117.13  Aligned_cols=93  Identities=24%  Similarity=0.286  Sum_probs=75.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--------cchhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--------KGAAKSFVTECEALSNVRHRNLIKIITVCSSI  117 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--------~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~  117 (628)
                      ..++|++.+.||+|+||.||+|.+..+++.||||++....        ......+.+|++++++++||||+++++++.  
T Consensus         8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--   85 (322)
T 2ycf_A            8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD--   85 (322)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEE--
T ss_pred             hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEc--
Confidence            3467999999999999999999999999999999986532        122346889999999999999999999854  


Q ss_pred             cccccceeeeeecccccCCchhhhhcc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                          ....|+||||+++|+|.+++...
T Consensus        86 ----~~~~~lv~e~~~~~~L~~~~~~~  108 (322)
T 2ycf_A           86 ----AEDYYIVLELMEGGELFDKVVGN  108 (322)
T ss_dssp             ----SSSEEEEEECCTTEETHHHHSTT
T ss_pred             ----CCceEEEEecCCCCcHHHHHhcc
Confidence                23479999999999999988643

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.08  E-value=8.5e-11  Score=118.65  Aligned_cols=92  Identities=28%  Similarity=0.364  Sum_probs=77.4

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      +.|+..+.||+|+||.||+|++..+|+.||+|++....   ....+.+.+|++++++++||||+++++++..     ...
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~  128 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----EHT  128 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CCe
Confidence            45888999999999999999999999999999997543   2334678999999999999999999998654     678


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .++||||+. |++.+++....
T Consensus       129 ~~lv~e~~~-g~l~~~l~~~~  148 (348)
T 1u5q_A          129 AWLVMEYCL-GSASDLLEVHK  148 (348)
T ss_dssp             EEEEEECCS-EEHHHHHHHHT
T ss_pred             EEEEEecCC-CCHHHHHHHhc
Confidence            999999998 57777775433

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.08  E-value=1e-10  Score=117.55  Aligned_cols=97  Identities=22%  Similarity=0.412  Sum_probs=80.1

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEEC-------CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLG-------ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVC  114 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~-------~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~  114 (628)
                      ....++|++.+.||+|+||.||+|++.       .+++.||+|++.... ....+.+.+|+.+++.+ +||||+++++++
T Consensus        31 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  110 (334)
T 2pvf_A           31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC  110 (334)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEE
Confidence            344678999999999999999999975       356789999997543 33456789999999999 899999999985


Q ss_pred             eeccccccceeeeeecccccCCchhhhhccc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .     .....++||||+++|+|.+++....
T Consensus       111 ~-----~~~~~~lv~e~~~~~~L~~~l~~~~  136 (334)
T 2pvf_A          111 T-----QDGPLYVIVEYASKGNLREYLRARR  136 (334)
T ss_dssp             C-----SSSCCEEEEECCTTCBHHHHHHTTS
T ss_pred             c-----cCCceEEEEECCCCCcHHHHHHHhc
Confidence            4     4678899999999999999997654

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.08  E-value=7.7e-11  Score=118.11  Aligned_cols=95  Identities=23%  Similarity=0.386  Sum_probs=76.4

Q ss_pred             HhCCCCcCceeecCCceeEEEEE-----ECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGK-----LGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~-----~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      ..++|++.+.||+|+||.||+|+     ...+++.||+|.+... .......+.+|+.++++++||||+++++++.    
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----  103 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----  103 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEc----
Confidence            35789999999999999999999     4457789999999654 3344567899999999999999999999854    


Q ss_pred             cccceeeeeecccccCCchhhhhccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       .....|+||||+++|+|.+++....
T Consensus       104 -~~~~~~lv~e~~~~~~L~~~l~~~~  128 (327)
T 2yfx_A          104 -QSLPRFILMELMAGGDLKSFLRETR  128 (327)
T ss_dssp             -SSSSCEEEEECCTTEEHHHHHHHTS
T ss_pred             -CCCCcEEEEecCCCCcHHHHHHhhc
Confidence             4677899999999999999997654

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.08  E-value=3.1e-11  Score=120.76  Aligned_cols=101  Identities=25%  Similarity=0.399  Sum_probs=83.8

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccce
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITV  113 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~  113 (628)
                      ..++....++|++.+.||+|+||.||+|++.     .+++.||+|.+.... ......+.+|+.+++.++||||++++++
T Consensus        17 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   96 (322)
T 1p4o_A           17 PDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGV   96 (322)
T ss_dssp             CCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred             hhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence            3455556788999999999999999999875     356789999997543 2344578999999999999999999998


Q ss_pred             eeeccccccceeeeeecccccCCchhhhhccc
Q 042887          114 CSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       114 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +.     .....++||||+++|+|.+++....
T Consensus        97 ~~-----~~~~~~lv~e~~~~~~L~~~l~~~~  123 (322)
T 1p4o_A           97 VS-----QGQPTLVIMELMTRGDLKSYLRSLR  123 (322)
T ss_dssp             EC-----SSSSCEEEEECCTTCBHHHHHHHHH
T ss_pred             Ec-----cCCccEEEEEeCCCCcHHHHHHHhc
Confidence            54     4678899999999999999997644

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.08  E-value=2e-10  Score=116.83  Aligned_cols=104  Identities=21%  Similarity=0.303  Sum_probs=83.5

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-----------chhhhHHHHHHHHhhcCCCCcc
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-----------GAAKSFVTECEALSNVRHRNLI  108 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----------~~~~~~~~E~~~l~~l~h~nIv  108 (628)
                      ..+.....++|++.+.||+|+||.||+|.+.. |+.||+|++.....           ...+.+.+|+.++++++||||+
T Consensus        14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHTTCSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHhccceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            44566778999999999999999999999854 89999999865321           1136789999999999999999


Q ss_pred             cccceeeeccccccceeeeeecccccCCchhhhhccc
Q 042887          109 KIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++++++...+-......|+||||+. |++.+++....
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~  128 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR  128 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc
Confidence            9999976533344567899999998 57888776544

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.08  E-value=6.1e-11  Score=124.45  Aligned_cols=96  Identities=24%  Similarity=0.403  Sum_probs=81.7

Q ss_pred             HHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           41 ADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        41 ~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      ..+....++|++.+.||+|+||.||+|.+. ++..||||+++... ...+.|.+|+.+|++++|||||++++++.     
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-----  253 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-----  253 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSEEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred             cceeechHHeEEEEEcccCCceEEEEEEEC-CccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-----
Confidence            445566788999999999999999999995 46789999997644 34678999999999999999999998853     


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                       ....++|||||++|+|.+++...
T Consensus       254 -~~~~~lv~e~~~~g~L~~~l~~~  276 (454)
T 1qcf_A          254 -KEPIYIITEFMAKGSLLDFLKSD  276 (454)
T ss_dssp             -SSSCEEEECCCTTCBHHHHHHSH
T ss_pred             -CCccEEEEeecCCCcHHHHHHhc
Confidence             45689999999999999999754

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.08  E-value=1.3e-10  Score=115.72  Aligned_cols=93  Identities=23%  Similarity=0.350  Sum_probs=75.3

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ...+.|++.+.||+|+||.||+|.+..+|+.||+|.+....  ..+.+.+|+.+++.++||||+++++++..     ...
T Consensus        26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~   98 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFK-----NTD   98 (314)
T ss_dssp             ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTE
T ss_pred             cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCE
Confidence            34578999999999999999999999999999999997643  34678999999999999999999998653     678


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||+++|+|.+++...
T Consensus        99 ~~lv~e~~~~~~L~~~~~~~  118 (314)
T 3com_A           99 LWIVMEYCGAGSVSDIIRLR  118 (314)
T ss_dssp             EEEEEECCTTEEHHHHHHHH
T ss_pred             EEEEeecCCCCCHHHHHHhc
Confidence            89999999999999998643

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.08  E-value=4.7e-11  Score=118.85  Aligned_cols=99  Identities=23%  Similarity=0.395  Sum_probs=82.6

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEE-----CCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceee
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCS  115 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~-----~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~  115 (628)
                      +....++|++.+.||+|+||.||+|.+     ..+++.||+|++.... ....+.+.+|+.+++++ +||||+++++++.
T Consensus        18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   97 (313)
T 1t46_A           18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT   97 (313)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe
Confidence            334457899999999999999999985     3567889999997643 23457799999999999 8999999999854


Q ss_pred             eccccccceeeeeecccccCCchhhhhcccc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                           ..+..++||||+++|+|.+++.....
T Consensus        98 -----~~~~~~lv~e~~~~~~L~~~l~~~~~  123 (313)
T 1t46_A           98 -----IGGPTLVITEYCCYGDLLNFLRRKRD  123 (313)
T ss_dssp             -----SSSSCEEEEECCTTEEHHHHHHHTTT
T ss_pred             -----cCCCcEEEEecCCCCCHHHHHHhccc
Confidence                 46788999999999999999976653

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.08  E-value=1.4e-10  Score=113.47  Aligned_cols=94  Identities=23%  Similarity=0.441  Sum_probs=79.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc-------
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF-------  119 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~-------  119 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|.+....    +.+.+|++++++++||||+++++++...++       
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   85 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK   85 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence            457999999999999999999998899999999987543    467799999999999999999998654221       


Q ss_pred             ----cccceeeeeecccccCCchhhhhcc
Q 042887          120 ----KGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       120 ----~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                          ......++||||+++|+|.+++...
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  114 (284)
T 2a19_B           86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKR  114 (284)
T ss_dssp             ---CCEEEEEEEEECCCCSCBHHHHHHHG
T ss_pred             cccccCcceEEEEEeccCCCCHHHHHhhc
Confidence                2345689999999999999999754

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.07  E-value=1.5e-10  Score=112.17  Aligned_cols=92  Identities=24%  Similarity=0.442  Sum_probs=79.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|.+. +++.||+|.+..... ..+.+.+|+++++.++||||+++++++.     .....+
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~   79 (267)
T 3t9t_A            7 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPIC   79 (267)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSCE
T ss_pred             hhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCCeE
Confidence            467899999999999999999995 678899999976543 3467899999999999999999999854     467889


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +||||+++|+|.+++....
T Consensus        80 lv~e~~~~~~L~~~~~~~~   98 (267)
T 3t9t_A           80 LVTEFMEHGCLSDYLRTQR   98 (267)
T ss_dssp             EEECCCTTCBHHHHHHHTT
T ss_pred             EEEeCCCCCcHHHHHhhCc
Confidence            9999999999999997654

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.07  E-value=1.2e-10  Score=113.36  Aligned_cols=90  Identities=23%  Similarity=0.389  Sum_probs=73.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|++.+.||+|+||.||+|.+  .|+.||+|++....    ....+.+.+|+++++.++||||+++++++.     ..
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~   78 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFW--IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCL-----KE   78 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEE--TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----CC
T ss_pred             hhheeeeeeeccCCCeEEEEEEE--cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----cC
Confidence            46799999999999999999998  58899999986542    233467889999999999999999999954     46


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...++||||++++++.+++..
T Consensus        79 ~~~~lv~e~~~~~~L~~~~~~   99 (271)
T 3dtc_A           79 PNLCLVMEFARGGPLNRVLSG   99 (271)
T ss_dssp             --CEEEEECCTTEEHHHHHTS
T ss_pred             CceEEEEEcCCCCCHHHHhhc
Confidence            788999999999999988853

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.07  E-value=1.3e-10  Score=117.30  Aligned_cols=95  Identities=21%  Similarity=0.433  Sum_probs=73.3

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      ...++|++.+.||+|+||.||+|++..+|+.||+|++....     ....+.+.+|+.+++.++||||+++++++     
T Consensus         7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----   81 (346)
T 1ua2_A            7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAF-----   81 (346)
T ss_dssp             ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEE-----
T ss_pred             HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEE-----
Confidence            34578999999999999999999999999999999997532     12245788999999999999999999985     


Q ss_pred             cccceeeeeecccccCCchhhhhccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ......++||||+++ ++.+++....
T Consensus        82 ~~~~~~~lv~e~~~~-~l~~~~~~~~  106 (346)
T 1ua2_A           82 GHKSNISLVFDFMET-DLEVIIKDNS  106 (346)
T ss_dssp             CCTTCCEEEEECCSE-EHHHHHTTCC
T ss_pred             eeCCceEEEEEcCCC-CHHHHHHhcC
Confidence            447789999999996 7888876544

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.07  E-value=1.4e-10  Score=121.71  Aligned_cols=95  Identities=20%  Similarity=0.256  Sum_probs=78.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||||++...  .....+++.+|+.+|+.++|||||++++++... .++...
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            47899999999999999999999999999999999754  334567789999999999999999999997542 123446


Q ss_pred             eeeeeecccccCCchhhhh
Q 042887          124 FKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~  142 (628)
                      ..|+||||++++ +.+.+.
T Consensus       141 ~~~lv~E~~~~~-l~~~~~  158 (464)
T 3ttj_A          141 DVYLVMELMDAN-LCQVIQ  158 (464)
T ss_dssp             EEEEEEECCSEE-HHHHHT
T ss_pred             eEEEEEeCCCCC-HHHHHh
Confidence            789999999875 555543

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.06  E-value=1.3e-10  Score=116.71  Aligned_cols=92  Identities=26%  Similarity=0.440  Sum_probs=79.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....  ....+.+.+|+.++++++||||+++++++.+     ...
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~   98 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK-----KKR   98 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeec-----CCE
Confidence            467999999999999999999999999999999986543  2334568899999999999999999999653     778


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .++||||++++++.++...
T Consensus        99 ~~lv~e~~~~~~l~~~~~~  117 (331)
T 4aaa_A           99 WYLVFEFVDHTILDDLELF  117 (331)
T ss_dssp             EEEEEECCSEEHHHHHHHS
T ss_pred             EEEEEecCCcchHHHHHhh
Confidence            9999999999988877543

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.06  E-value=3.7e-11  Score=120.91  Aligned_cols=94  Identities=22%  Similarity=0.314  Sum_probs=70.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--------cchhhhHHHHHHHHhhcC---------CCCccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--------KGAAKSFVTECEALSNVR---------HRNLIK  109 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--------~~~~~~~~~E~~~l~~l~---------h~nIv~  109 (628)
                      .++|++.+.||+|+||.||+|++  +|+.||||++....        ....+.+.+|+.++++++         |||||+
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             cccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            46799999999999999999999  78999999997642        123367899999999886         555555


Q ss_pred             ccceee-----------------e--------ccccccceeeeeecccccCCchhhhh
Q 042887          110 IITVCS-----------------S--------IDFKGVDFKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       110 l~~~~~-----------------~--------~~~~~~~~~~lv~e~~~~g~L~~~l~  142 (628)
                      +.+++.                 +        .++......|+|||||++|++.+.+.
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~  154 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMR  154 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGT
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHH
Confidence            544321                 1        00113678999999999998766664

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.06  E-value=5e-11  Score=119.23  Aligned_cols=93  Identities=23%  Similarity=0.484  Sum_probs=76.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++|++.+.||+|+||.||+|++..+++.||+|++..... .....+.+|+.+++.++||||+++++++.     .....+
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~   76 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-----TEKSLT   76 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEE-----CSSCEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEe-----eCCEEE
Confidence            579999999999999999999999999999999975432 23345678999999999999999999954     477899


Q ss_pred             eeecccccCCchhhhhcccc
Q 042887          127 LIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~  146 (628)
                      +||||++ |++.+++.....
T Consensus        77 lv~e~~~-~~l~~~~~~~~~   95 (324)
T 3mtl_A           77 LVFEYLD-KDLKQYLDDCGN   95 (324)
T ss_dssp             EEEECCS-EEHHHHHHHTTT
T ss_pred             EEecccc-cCHHHHHHhcCC
Confidence            9999998 488888876543

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.06  E-value=1.5e-10  Score=116.22  Aligned_cols=91  Identities=23%  Similarity=0.285  Sum_probs=78.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....  ..+.+.+|+.+++.+ +||||+++++++..     ....
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-----~~~~   80 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPC-----GKYN   80 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEE-----TTEE
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEec-----CCcc
Confidence            367999999999999999999999999999999987543  235688999999999 89999999998543     6788


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||+ +|+|.+++....
T Consensus        81 ~lv~e~~-~~~L~~~~~~~~   99 (330)
T 2izr_A           81 AMVLELL-GPSLEDLFDLCD   99 (330)
T ss_dssp             EEEEECC-CCBHHHHHHHTT
T ss_pred             EEEEEeC-CCCHHHHHHHcC
Confidence            9999999 999999987653

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.06  E-value=2e-10  Score=116.77  Aligned_cols=95  Identities=22%  Similarity=0.392  Sum_probs=80.5

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--------chhhhHHHHHHHHhhc-CCCCccccccee
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--------GAAKSFVTECEALSNV-RHRNLIKIITVC  114 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------~~~~~~~~E~~~l~~l-~h~nIv~l~~~~  114 (628)
                      ....++|++.+.||+|+||.||+|++..+|+.||||++.....        ...+.+.+|+.+++++ +||||+++++++
T Consensus        90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            3345679999999999999999999988999999999875431        1245688999999999 799999999985


Q ss_pred             eeccccccceeeeeecccccCCchhhhhc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      .     .....++||||+++|+|.+++..
T Consensus       170 ~-----~~~~~~lv~e~~~g~~L~~~l~~  193 (365)
T 2y7j_A          170 E-----SSSFMFLVFDLMRKGELFDYLTE  193 (365)
T ss_dssp             E-----BSSEEEEEECCCTTCBHHHHHHH
T ss_pred             e-----eCCEEEEEEEeCCCCcHHHHHHh
Confidence            4     47889999999999999999864

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.06  E-value=1.6e-10  Score=115.81  Aligned_cols=93  Identities=29%  Similarity=0.540  Sum_probs=77.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEE--EEEEeecc-ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTV--AVKVMNLK-QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~--avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ++|++.+.||+|+||.||+|++..+|+.+  |+|.+... .....+.+.+|+++++++ +||||+++++++.     ...
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-----~~~   99 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACE-----HRG   99 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEE-----ETT
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeee-----eCC
Confidence            57999999999999999999998888765  99988753 334557799999999999 8999999999964     377


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+||||+++|+|.+++....
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~  121 (327)
T 1fvr_A          100 YLYLAIEYAPHGNLLDFLRKSR  121 (327)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTC
T ss_pred             ceEEEEecCCCCCHHHHHHhcc
Confidence            8999999999999999997654

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.06  E-value=9.4e-11  Score=119.21  Aligned_cols=103  Identities=22%  Similarity=0.238  Sum_probs=85.6

Q ss_pred             CcccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-----CCCcccc
Q 042887           36 PMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-----HRNLIKI  110 (628)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-----h~nIv~l  110 (628)
                      ..+++.+.....++|++.+.||+|+||.||+|++..+++.||+|++.... ...+.+.+|+.+++.+.     ||||+++
T Consensus        23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv~~  101 (360)
T 3llt_A           23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIVKY  101 (360)
T ss_dssp             GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred             eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence            34555555666789999999999999999999999999999999987432 23456788999999986     9999999


Q ss_pred             cceeeeccccccceeeeeecccccCCchhhhhccc
Q 042887          111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       111 ~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++++..     .+..++||||+ +++|.+++....
T Consensus       102 ~~~~~~-----~~~~~lv~e~~-~~~L~~~~~~~~  130 (360)
T 3llt_A          102 HGKFMY-----YDHMCLIFEPL-GPSLYEIITRNN  130 (360)
T ss_dssp             EEEEEE-----TTEEEEEECCC-CCBHHHHHHHTT
T ss_pred             cceeeE-----CCeeEEEEcCC-CCCHHHHHHhcC
Confidence            998653     67899999999 899999987544

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.06  E-value=1.3e-10  Score=118.32  Aligned_cols=96  Identities=23%  Similarity=0.308  Sum_probs=73.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~  123 (628)
                      .+.|++.+.||+|+||.||+|.+..+|+.||||++...  .....+++.+|+.+++.++||||+++++++... ......
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            46799999999999999999999999999999998653  233456789999999999999999999987541 112235


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..|+||||+ +++|.+++..
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~  122 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKH  122 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHH
T ss_pred             eEEEEEecC-CCCHHHHHhc
Confidence            679999999 7899988865

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.05  E-value=1.6e-10  Score=118.48  Aligned_cols=98  Identities=20%  Similarity=0.381  Sum_probs=81.4

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECC-------CCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccce
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGE-------TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITV  113 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~-------~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~  113 (628)
                      +....++|.+.+.||+|+||.||+|++..       .+..||+|++.... ....+.+.+|+++++.+ +||||++++++
T Consensus        64 ~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~  143 (382)
T 3tt0_A           64 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGA  143 (382)
T ss_dssp             TBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheee
Confidence            34456789999999999999999999753       33579999997643 34457789999999999 89999999999


Q ss_pred             eeeccccccceeeeeecccccCCchhhhhccc
Q 042887          114 CSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       114 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +.     .....++||||+++|+|.+++....
T Consensus       144 ~~-----~~~~~~lv~e~~~~g~L~~~l~~~~  170 (382)
T 3tt0_A          144 CT-----QDGPLYVIVEYASKGNLREYLQARR  170 (382)
T ss_dssp             EC-----SSSSCEEEEECCTTCBHHHHHHHTC
T ss_pred             ec-----cCCceEEEEEecCCCcHHHHHHHhc
Confidence            54     4778899999999999999997654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.05  E-value=1.4e-10  Score=115.96  Aligned_cols=101  Identities=22%  Similarity=0.405  Sum_probs=72.1

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCc---EEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGT---TVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~---~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      ...++|++.+.||+|+||.||+|++..+++   .||+|+++..  .....+.+.+|+.++++++||||+++++++.....
T Consensus        20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred             cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence            345689999999999999999999877665   7999999754  33456789999999999999999999998754111


Q ss_pred             -cccceeeeeecccccCCchhhhhccc
Q 042887          120 -KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 -~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       ......++||||+++|+|.+++....
T Consensus       100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~  126 (323)
T 3qup_A          100 KGRLPIPMVILPFMKHGDLHAFLLASR  126 (323)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHHHH
T ss_pred             ccCCCccEEEEEeccCCcHHHHHHhhh
Confidence             11123489999999999999986543

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.05  E-value=7.3e-11  Score=118.54  Aligned_cols=94  Identities=24%  Similarity=0.402  Sum_probs=80.1

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--------chhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--------GAAKSFVTECEALSNVRHRNLIKIITVCSSI  117 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~  117 (628)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++.....        ...+.+.+|+.++++++||||+++++++.  
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~--   99 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFE--   99 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEE--
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEe--
Confidence            34679999999999999999999999999999999976421        23456889999999999999999999954  


Q ss_pred             cccccceeeeeecccccC-Cchhhhhcc
Q 042887          118 DFKGVDFKALIYEYMKCG-SSEDWMHQS  144 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g-~L~~~l~~~  144 (628)
                         .....++||||+.+| ++.+++...
T Consensus       100 ---~~~~~~lv~e~~~~g~~l~~~~~~~  124 (335)
T 3dls_A          100 ---NQGFFQLVMEKHGSGLDLFAFIDRH  124 (335)
T ss_dssp             ---CSSEEEEEEECCTTSCBHHHHHHTC
T ss_pred             ---eCCEEEEEEEeCCCCccHHHHHHhc
Confidence               478899999999777 888888654

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.05  E-value=6.3e-11  Score=115.94  Aligned_cols=94  Identities=20%  Similarity=0.323  Sum_probs=78.2

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCC---CcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGET---GTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..++|++.+.||+|+||.||+|.+..+   +..||+|...... ....+.+.+|+.++++++||||+++++++.      
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------   86 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------   86 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc------
Confidence            456899999999999999999998654   4569999986543 344567899999999999999999998853      


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ....++||||+++|+|.+++....
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~  110 (281)
T 1mp8_A           87 ENPVWIIMELCTLGELRSFLQVRK  110 (281)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHTT
T ss_pred             cCccEEEEecCCCCCHHHHHHhcC
Confidence            456799999999999999997554

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.05  E-value=1.4e-10  Score=114.92  Aligned_cols=88  Identities=30%  Similarity=0.537  Sum_probs=75.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|.+  .++.||+|.+...  ...+.+.+|+.++++++||||+++++++.       +..+
T Consensus         7 ~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-------~~~~   75 (307)
T 2eva_A            7 YKEIEVEEVVGRGAFGVVCKAKW--RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL-------NPVC   75 (307)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEE--TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT-------TTTE
T ss_pred             HhHeeeeeEeecCCCceEEEEEE--CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc-------CCcE
Confidence            35788999999999999999998  5788999998643  34567899999999999999999998842       3478


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +||||+++|+|.+++....
T Consensus        76 lv~e~~~~~~L~~~l~~~~   94 (307)
T 2eva_A           76 LVMEYAEGGSLYNVLHGAE   94 (307)
T ss_dssp             EEEECCTTCBHHHHHHCSS
T ss_pred             EEEEcCCCCCHHHHHhccC
Confidence            9999999999999997543

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.05  E-value=9.9e-11  Score=122.70  Aligned_cols=96  Identities=25%  Similarity=0.436  Sum_probs=80.5

Q ss_pred             HHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           41 ADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        41 ~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      ..+....++|++.+.||+|+||.||+|.+.. +..||||+++.... ..+.|.+|+.+|++++||||+++++++.     
T Consensus       177 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----  249 (452)
T 1fmk_A          177 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS-----  249 (452)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred             cccccChhHceeeeeecCCCCeEEEEEEECC-CceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEc-----
Confidence            3455567789999999999999999999954 56799999976432 3467999999999999999999999853     


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                       ....++||||+++|+|.+++...
T Consensus       250 -~~~~~iv~e~~~~gsL~~~l~~~  272 (452)
T 1fmk_A          250 -EEPIYIVTEYMSKGSLLDFLKGE  272 (452)
T ss_dssp             -SSSCEEEECCCTTCBHHHHHSHH
T ss_pred             -CCceEEEehhhcCCCHHHHHHhc
Confidence             25689999999999999999753

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.05  E-value=2.7e-10  Score=112.84  Aligned_cols=93  Identities=24%  Similarity=0.423  Sum_probs=76.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....    ....+.+.+|+.++++++||||+++++++..   +..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~   80 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN---EEK   80 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC---C--
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc---CCC
Confidence            478999999999999999999999999999999997542    2345678999999999999999999998642   345


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...++||||+++| +.+++..
T Consensus        81 ~~~~lv~e~~~~~-l~~~~~~  100 (305)
T 2wtk_C           81 QKMYMVMEYCVCG-MQEMLDS  100 (305)
T ss_dssp             -CEEEEEECCSEE-HHHHHHH
T ss_pred             CeEEEEehhccCC-HHHHHHh
Confidence            6889999999987 6666644

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.05  E-value=1.1e-10  Score=116.38  Aligned_cols=103  Identities=19%  Similarity=0.375  Sum_probs=83.9

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEE-----CCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccc
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIIT  112 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~-----~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~  112 (628)
                      ...+....++|++.+.||+|+||.||+|++     ..+++.||+|++.... ....+.+.+|+.+++++ +||||+++++
T Consensus        19 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~   98 (316)
T 2xir_A           19 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   98 (316)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEE
Confidence            345555678899999999999999999985     3467889999997643 33456789999999999 6999999999


Q ss_pred             eeeeccccccceeeeeecccccCCchhhhhcccc
Q 042887          113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ++..    .....++||||+++|+|.+++.....
T Consensus        99 ~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~  128 (316)
T 2xir_A           99 ACTK----PGGPLMVIVEFCKFGNLSTYLRSKRN  128 (316)
T ss_dssp             EECC----TTSCCEEEEECCTTEEHHHHHHTCTT
T ss_pred             EEec----CCCceEEEEEcCCCCcHHHHHHhccc
Confidence            8642    34568999999999999999976553

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.05  E-value=1.5e-10  Score=116.21  Aligned_cols=95  Identities=25%  Similarity=0.462  Sum_probs=77.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCC----cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETG----TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~----~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .++|.+.+.||+|+||.||+|.+..++    ..||+|.+.... ......+.+|+.++++++||||+++++++     ..
T Consensus        43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----~~  117 (333)
T 1mqb_A           43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVI-----SK  117 (333)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-----CS
T ss_pred             hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----ec
Confidence            356777899999999999999986543    359999997543 33456789999999999999999999985     34


Q ss_pred             cceeeeeecccccCCchhhhhcccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ....++||||+++|+|.+++.....
T Consensus       118 ~~~~~lv~e~~~~~~L~~~l~~~~~  142 (333)
T 1mqb_A          118 YKPMMIITEYMENGALDKFLREKDG  142 (333)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHTTT
T ss_pred             CCCcEEEEeCCCCCcHHHHHHhCCC
Confidence            7789999999999999999976543

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.04  E-value=2.6e-10  Score=116.00  Aligned_cols=96  Identities=17%  Similarity=0.255  Sum_probs=81.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|+.++++++||||+++++++.....+.....
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            457999999999999999999999999999999997543 3345778999999999999999999998765444455678


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      |+||||+.+ ++.+++..
T Consensus       106 ~iv~e~~~~-~L~~~l~~  122 (364)
T 3qyz_A          106 YIVQDLMET-DLYKLLKT  122 (364)
T ss_dssp             EEEEECCSE-EHHHHHHH
T ss_pred             EEEEcccCc-CHHHHHHh
Confidence            999999985 88888754

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.04  E-value=3e-10  Score=112.29  Aligned_cols=91  Identities=26%  Similarity=0.451  Sum_probs=74.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhh--cCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSN--VRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~--l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|++  +|+.||+|++...   ....+.+|.+++..  ++||||+++++++... ......
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~-~~~~~~   80 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTS-RHSSTQ   80 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEE-ETTEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccc-cCCCce
Confidence            46899999999999999999998  7899999998653   23556677777766  7899999999986541 233567


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .++||||+++|+|.+++..
T Consensus        81 ~~lv~e~~~~g~L~~~l~~   99 (301)
T 3q4u_A           81 LWLITHYHEMGSLYDYLQL   99 (301)
T ss_dssp             EEEEECCCTTCBHHHHHTT
T ss_pred             eEEehhhccCCCHHHHHhh
Confidence            8999999999999999954

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.04  E-value=4.6e-11  Score=118.30  Aligned_cols=95  Identities=22%  Similarity=0.320  Sum_probs=64.5

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ....++|++.+.||+|+||.||+|.+..+++.||+|.+.... ....+.+.+|+.++++++||||+++++++.     ..
T Consensus        11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~   85 (303)
T 2vwi_A           11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFV-----VK   85 (303)
T ss_dssp             --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEE-----SS
T ss_pred             ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEe-----ec
Confidence            345678999999999999999999998899999999986543 334567889999999999999999999864     36


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...++||||+++|+|.+++..
T Consensus        86 ~~~~lv~e~~~~~~L~~~l~~  106 (303)
T 2vwi_A           86 DELWLVMKLLSGGSVLDIIKH  106 (303)
T ss_dssp             SCEEEEEECCTTCBHHHHHHH
T ss_pred             CCcEEEehhccCCchHHHHHH
Confidence            788999999999999999864

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.04  E-value=1.8e-10  Score=114.90  Aligned_cols=96  Identities=18%  Similarity=0.336  Sum_probs=76.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeec---------
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSI---------  117 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~---------  117 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|.+........+.+.+|+.++++++||||+++++++...         
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            46799999999999999999999999999999999876666667899999999999999999999876321         


Q ss_pred             cccccceeeeeecccccCCchhhhhc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      .+......++||||++ |++.+++..
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~  114 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQ  114 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTT
T ss_pred             cccccCceeEEeeccC-CCHHHHhhc
Confidence            1234578899999998 589888854

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.04  E-value=3.1e-10  Score=113.78  Aligned_cols=90  Identities=18%  Similarity=0.307  Sum_probs=78.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|+++...   .+.+.+|+.++++++ ||||+++++++..   ......
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~---~~~~~~  108 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKD---PVSRTP  108 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEEC---TTTCCE
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeecc---CCCCce
Confidence            367999999999999999999999999999999987433   367889999999997 9999999998653   235678


Q ss_pred             eeeecccccCCchhhhh
Q 042887          126 ALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~  142 (628)
                      ++||||++++++.+++.
T Consensus       109 ~lv~e~~~~~~l~~~~~  125 (330)
T 3nsz_A          109 ALVFEHVNNTDFKQLYQ  125 (330)
T ss_dssp             EEEEECCCCCCHHHHGG
T ss_pred             EEEEeccCchhHHHHHH
Confidence            99999999999988874

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.04  E-value=1.2e-10  Score=113.87  Aligned_cols=94  Identities=24%  Similarity=0.443  Sum_probs=78.6

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      +....++|++.+.||+|+||.||+|.+. +++.||+|.+..... ..+.+.+|+++++.++||||+++++++.      .
T Consensus         8 ~~v~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~   79 (279)
T 1qpc_A            8 WEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVT------Q   79 (279)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC------S
T ss_pred             cccCHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEc------C
Confidence            3344578999999999999999999984 567899999875432 3567899999999999999999998853      3


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...++||||+++++|.+++...
T Consensus        80 ~~~~~v~e~~~~~~L~~~l~~~  101 (279)
T 1qpc_A           80 EPIYIITEYMENGSLVDFLKTP  101 (279)
T ss_dssp             SSCEEEEECCTTCBHHHHTTSH
T ss_pred             CCcEEEEecCCCCCHHHHHhcC
Confidence            4579999999999999998654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.04  E-value=2.3e-10  Score=113.00  Aligned_cols=96  Identities=25%  Similarity=0.487  Sum_probs=77.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCC---cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETG---TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~---~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ...|++.+.||+|+||.||+|.+..++   ..||+|.+.... ....+.+.+|+.++++++||||+++++++.    ...
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----~~~   99 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL----RSE   99 (298)
T ss_dssp             GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEC----CSS
T ss_pred             ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEE----cCC
Confidence            356888899999999999999975433   358999987543 344577899999999999999999999863    345


Q ss_pred             ceeeeeecccccCCchhhhhcccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ...++||||+++|+|.+++.....
T Consensus       100 ~~~~~v~e~~~~~~L~~~l~~~~~  123 (298)
T 3f66_A          100 GSPLVVLPYMKHGDLRNFIRNETH  123 (298)
T ss_dssp             SCCEEEEECCTTCBHHHHHHCTTC
T ss_pred             CceEEEEeCCCCCCHHHHHHhccc
Confidence            678999999999999999976443

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.04  E-value=1.4e-10  Score=117.31  Aligned_cols=88  Identities=17%  Similarity=0.241  Sum_probs=76.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccc---h--------------hhhHHHHHHHHhhcCCCCccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG---A--------------AKSFVTECEALSNVRHRNLIK  109 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~---~--------------~~~~~~E~~~l~~l~h~nIv~  109 (628)
                      .++|++.+.||+|+||.||+|.+  +|+.||+|.+......   .              .+.+.+|+.++++++||||++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~  107 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLT  107 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcce
Confidence            46899999999999999999999  8999999999754211   1              178999999999999999999


Q ss_pred             ccceeeeccccccceeeeeecccccCCchhhh
Q 042887          110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       110 l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l  141 (628)
                      +++++.     ..+..++||||+++|+|.+++
T Consensus       108 ~~~~~~-----~~~~~~lv~e~~~~~~L~~~~  134 (348)
T 2pml_X          108 CEGIIT-----NYDEVYIIYEYMENDSILKFD  134 (348)
T ss_dssp             CSEEEE-----SSSEEEEEEECCTTCBSSEES
T ss_pred             EEEEEe-----eCCeEEEEEeccCCCcHHHHH
Confidence            999964     467899999999999999883

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.04  E-value=1.9e-10  Score=115.10  Aligned_cols=96  Identities=23%  Similarity=0.427  Sum_probs=77.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcE----EEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTT----VAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~----~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .++|++.+.||+|+||.||+|++..+++.    ||+|.+.... ......+.+|+.++++++||||+++++++.      
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------   85 (325)
T 3kex_A           12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP------   85 (325)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred             HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc------
Confidence            35799999999999999999999888876    6677664332 334467889999999999999999999853      


Q ss_pred             cceeeeeecccccCCchhhhhcccccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      ....++||||+++|++.+++......+
T Consensus        86 ~~~~~~v~e~~~~~~L~~~l~~~~~~~  112 (325)
T 3kex_A           86 GSSLQLVTQYLPLGSLLDHVRQHRGAL  112 (325)
T ss_dssp             BSSEEEEEECCTTCBSHHHHHSSGGGS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHccccC
Confidence            456889999999999999997654333

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.03  E-value=1.1e-10  Score=117.04  Aligned_cols=102  Identities=25%  Similarity=0.401  Sum_probs=83.9

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccc-
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDF-  119 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~-  119 (628)
                      +.....+.|++.+.||+|+||.||+|++..+|+.||+|++..... ..+.+.+|+.+++++ +||||+++++++..... 
T Consensus        18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   96 (326)
T 2x7f_A           18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP   96 (326)
T ss_dssp             CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred             hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence            334456889999999999999999999999999999999875432 346789999999999 79999999998754111 


Q ss_pred             cccceeeeeecccccCCchhhhhcc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ......++||||+++|+|.+++...
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~  121 (326)
T 2x7f_A           97 GMDDQLWLVMEFCGAGSVTDLIKNT  121 (326)
T ss_dssp             CCCCEEEEEEECCTTEEHHHHHHHS
T ss_pred             cccceEEEEEEcCCCCcHHHHHHhc
Confidence            1146789999999999999998754

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.03  E-value=2.4e-10  Score=117.13  Aligned_cols=94  Identities=20%  Similarity=0.290  Sum_probs=72.7

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc-----
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF-----  119 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~-----  119 (628)
                      ...++|++.+.||+|+||.||+|++..+|+.||+|++....    ....+|+.+|+.++||||+++++++....-     
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~   79 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP   79 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence            45678999999999999999999999999999999986542    223479999999999999999998754111     


Q ss_pred             ----------------------------cccceeeeeecccccCCchhhhhc
Q 042887          120 ----------------------------KGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       120 ----------------------------~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                                                  ......++||||+++ ++.+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~  130 (383)
T 3eb0_A           80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKS  130 (383)
T ss_dssp             ------------------------------CCEEEEEECCCSE-EHHHHHHH
T ss_pred             cccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHH
Confidence                                        234568899999995 77766653

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.03  E-value=2.4e-10  Score=117.36  Aligned_cols=95  Identities=21%  Similarity=0.362  Sum_probs=72.6

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcC-CCCcccccceeeeccccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~  121 (628)
                      ...++|++.+.||+|+||.||+|.+..+|+.||+|++...  ......++.+|+.+++++. ||||+++++++..   +.
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~---~~   82 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRA---DN   82 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC---TT
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEec---CC
Confidence            3467899999999999999999999999999999998653  2345567889999999997 9999999998653   33


Q ss_pred             cceeeeeecccccCCchhhhhc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ....|+|||||+ |++.+++..
T Consensus        83 ~~~~~lv~e~~~-~~L~~~~~~  103 (388)
T 3oz6_A           83 DRDVYLVFDYME-TDLHAVIRA  103 (388)
T ss_dssp             SSCEEEEEECCS-EEHHHHHHH
T ss_pred             CCEEEEEecccC-cCHHHHHHc
Confidence            457899999998 588888864

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.03  E-value=2.8e-10  Score=115.33  Aligned_cols=96  Identities=22%  Similarity=0.351  Sum_probs=81.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||||.+.... ......+.+|+.++++++||||+++++++....+......
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            468999999999999999999999999999999996543 3345678899999999999999999998765445556789


Q ss_pred             eeeecccccCCchhhhhc
Q 042887          126 ALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~  143 (628)
                      ++||||+. |++.+++..
T Consensus        90 ~lv~e~~~-~~L~~~~~~  106 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVIST  106 (353)
T ss_dssp             EEEECCCS-EEHHHHHHH
T ss_pred             EEEEeccC-ccHHHHHhh
Confidence            99999998 588888764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.02  E-value=3.1e-10  Score=114.15  Aligned_cols=193  Identities=17%  Similarity=0.172  Sum_probs=109.5

Q ss_pred             CcccEEEccCCcccc-c-------cchhhhCCCCCCEEecccCcCc---------ccccccccCCCCCCEeecccccCcc
Q 042887          162 LKLEMIDVGDNQLIG-K-------FPDFIANFSALEAIDISANMLG---------GRIPDSLCQLRSLNYLSISENNFSC  224 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~-~-------~~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~N~i~~  224 (628)
                      .+++.|.+......+ .       +.++...+++|+.|.+..+...         +.+...+..+++|+.|+|++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            356666666554331 1       1334556789999988765331         123345567888999999887311 


Q ss_pred             cCCcCccCCCCCCEEEeecccCcccCChhhh-hCCCCCcEEeccc--Cccccc-----ccccc--cCCCCCCEEEccccc
Q 042887          225 KLPLSIWNISSLEIISLHSNRFEGSLPLNIG-FNIPNVNFLSVGQ--NNFTGS-----LPHSF--SNASNLQVLDVYKNH  294 (628)
Q Consensus       225 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~--N~l~~~-----~~~~~--~~l~~L~~L~L~~N~  294 (628)
                      ..+. + .+++|++|++..|.+.......+. ..+|+|+.|+|+.  |...+.     +...+  ..+++|++|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            2233 3 378889999988877633222333 2478888888753  221111     11122  246778888887777


Q ss_pred             ceeecccccc---cCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHh
Q 042887          295 FSGQVKIDFN---RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIAN  359 (628)
Q Consensus       295 i~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~  359 (628)
                      ++...+..+.   .+++|++|+|+.|.+++....  .....+.++++|+.|+++.|.++......+..
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~--~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGAR--LLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH--HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHH--HHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            7643332232   356777777777776542111  11222344566777777776666554444443

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.02  E-value=1.2e-10  Score=124.70  Aligned_cols=97  Identities=25%  Similarity=0.425  Sum_probs=80.9

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      ...+....++|++.+.||+|+||.||+|.+.. +..||||+++.... ..+.|.+|+.+|++++||||+++++++.    
T Consensus       259 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~----  332 (535)
T 2h8h_A          259 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS----  332 (535)
T ss_dssp             TTCSBCCGGGEEEEEEEEECSSEEEEEEEETT-TEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred             ccceecchhhhhhheecccCCCeEEEEEEECC-CceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEe----
Confidence            34455567789999999999999999999954 56799999976442 3467999999999999999999999853    


Q ss_pred             cccceeeeeecccccCCchhhhhcc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                        ....|+|||||++|+|.+++...
T Consensus       333 --~~~~~lv~e~~~~gsL~~~l~~~  355 (535)
T 2h8h_A          333 --EEPIYIVTEYMSKGSLLDFLKGE  355 (535)
T ss_dssp             --SSSCEEEECCCTTEEHHHHHSHH
T ss_pred             --eccceEeeehhcCCcHHHHHhhc
Confidence              35689999999999999999753

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.02  E-value=2.7e-10  Score=114.01  Aligned_cols=100  Identities=18%  Similarity=0.266  Sum_probs=82.2

Q ss_pred             HHHHHHHhCCCCcC-ceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcC-CCCcccccceee
Q 042887           40 YADLSKATNNFSAS-NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVR-HRNLIKIITVCS  115 (628)
Q Consensus        40 ~~~~~~~~~~~~~~-~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~  115 (628)
                      +.......+.|.+. +.||+|+||.||+|.+..+|+.||+|++....  ......+.+|+.+++.+. ||||+++++++ 
T Consensus        20 ~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~-   98 (327)
T 3lm5_A           20 FQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVY-   98 (327)
T ss_dssp             SBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEE-
T ss_pred             HHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEE-
Confidence            34444445667776 88999999999999999999999999997643  334567899999999995 69999999995 


Q ss_pred             eccccccceeeeeecccccCCchhhhhcc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                          ......++||||+++|+|.+++...
T Consensus        99 ----~~~~~~~lv~e~~~~~~L~~~~~~~  123 (327)
T 3lm5_A           99 ----ENTSEIILILEYAAGGEIFSLCLPE  123 (327)
T ss_dssp             ----ECSSEEEEEEECCTTEEGGGGGSSC
T ss_pred             ----EeCCeEEEEEEecCCCcHHHHHHHh
Confidence                4478899999999999999988543

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.02  E-value=3.2e-10  Score=111.96  Aligned_cols=92  Identities=28%  Similarity=0.545  Sum_probs=76.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....  ....+.+.+|+.++++++||||+++++++..     ...
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~   76 (299)
T 2r3i_A            2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----ENK   76 (299)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTE
T ss_pred             cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEec-----CCc
Confidence            367999999999999999999999999999999986543  2344678899999999999999999999653     678


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||+. |++.+++...
T Consensus        77 ~~lv~e~~~-~~L~~~~~~~   95 (299)
T 2r3i_A           77 LYLVFEFLH-QDLKKFMDAS   95 (299)
T ss_dssp             EEEEEECCS-EEHHHHHHHT
T ss_pred             eEEEEEccc-CCHHHHHHhh
Confidence            999999998 5888888654

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.02  E-value=2.4e-10  Score=114.46  Aligned_cols=96  Identities=25%  Similarity=0.477  Sum_probs=73.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEE----EEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTV----AVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~----avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .++|++.+.||+|+||.||+|++..+++.+    |+|.+... .....+.+.+|+.++++++||||+++++++..     
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----   88 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT-----   88 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES-----
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----
Confidence            357999999999999999999998777654    77776543 23445779999999999999999999999753     


Q ss_pred             cceeeeeecccccCCchhhhhcccccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                       ...++++||+++|++.+++......+
T Consensus        89 -~~~~~v~e~~~~g~L~~~l~~~~~~~  114 (327)
T 3poz_A           89 -STVQLITQLMPFGCLLDYVREHKDNI  114 (327)
T ss_dssp             -SSEEEEEECCTTCBHHHHHHHSTTSC
T ss_pred             -CCeEEEEEecCCCcHHHHHHhcCCCC
Confidence             34789999999999999997655433

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.01  E-value=2.2e-10  Score=111.86  Aligned_cols=92  Identities=28%  Similarity=0.486  Sum_probs=76.4

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|++.+.||+|+||.||+|.+  +|+.||+|+++...  ..+.+.+|+.++++++||||+++++++.    +.....
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~----~~~~~~   90 (278)
T 1byg_A           19 NMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIV----EEKGGL   90 (278)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEEC----CC--CC
T ss_pred             ChhhceEEeEEecCCCceEEEEEE--cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEE----cCCCce
Confidence            356899999999999999999998  58899999987543  4567899999999999999999999853    234578


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++||||+++|+|.+++....
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~  110 (278)
T 1byg_A           91 YIVTEYMAKGSLVDYLRSRG  110 (278)
T ss_dssp             EEEECCCTTEEHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHhcc
Confidence            99999999999999987543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.01  E-value=3.1e-10  Score=112.78  Aligned_cols=93  Identities=19%  Similarity=0.174  Sum_probs=75.1

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||||++....  ......+.+|+..+.++ .||||+++++++.+     ...
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~-----~~~  131 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEE-----GGI  131 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEe-----CCE
Confidence            57999999999999999999999999999999986532  23344566677666666 89999999999654     788


Q ss_pred             eeeeecccccCCchhhhhcccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      .++||||+ ++++.+++.....
T Consensus       132 ~~lv~e~~-~~~L~~~~~~~~~  152 (311)
T 3p1a_A          132 LYLQTELC-GPSLQQHCEAWGA  152 (311)
T ss_dssp             EEEEEECC-CCBHHHHHHHHCS
T ss_pred             EEEEEecc-CCCHHHHHHhcCC
Confidence            99999999 6688888866543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.01  E-value=3.8e-10  Score=111.92  Aligned_cols=99  Identities=24%  Similarity=0.431  Sum_probs=77.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcC---CCCcccccceeeec
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVR---HRNLIKIITVCSSI  117 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~~  117 (628)
                      ..++|++.+.||+|+||.||+|++..+|+.||+|++....     ......+.+|+.+++.++   ||||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            3578999999999999999999999999999999997532     122356778888877775   99999999997653


Q ss_pred             cccccceeeeeecccccCCchhhhhccc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ........++||||+. |++.+++....
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~  113 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKAP  113 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTCC
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhcc
Confidence            2223346899999998 59998887544

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.01  E-value=3.2e-10  Score=112.82  Aligned_cols=102  Identities=27%  Similarity=0.529  Sum_probs=76.2

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECC---CCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGE---TGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSI  117 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~---~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~  117 (628)
                      .....++|.+.+.||+|+||.||+|.+..   +++.||+|.++...  ....+.+.+|+.++++++||||+++++++...
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  108 (313)
T 3brb_A           29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM  108 (313)
T ss_dssp             TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred             cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence            33445789999999999999999998765   45589999987542  33456789999999999999999999997653


Q ss_pred             cccccceeeeeecccccCCchhhhhcc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ........++||||+++|+|.+++...
T Consensus       109 ~~~~~~~~~~v~e~~~~~~L~~~l~~~  135 (313)
T 3brb_A          109 SSQGIPKPMVILPFMKYGDLHTYLLYS  135 (313)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHT
T ss_pred             cccCCcccEEEEecccCCCHHHHHHHh
Confidence            222234569999999999999998543

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.01  E-value=2.1e-10  Score=116.82  Aligned_cols=94  Identities=26%  Similarity=0.505  Sum_probs=76.3

Q ss_pred             CCCcCceeecCCceeEEEEEECCCC---cEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETG---TTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~---~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .|++.+.||+|+||.||+|.+..++   ..||+|.++.. .....+.+.+|+.++++++||||+++++++.    +....
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~~  165 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL----RSEGS  165 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEEC----CCSSC
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEE----cCCCC
Confidence            3667789999999999999975432   45899998654 3345678999999999999999999999863    33567


Q ss_pred             eeeeecccccCCchhhhhcccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      .++||||+++|+|.+++.....
T Consensus       166 ~~lv~e~~~~g~L~~~l~~~~~  187 (373)
T 3c1x_A          166 PLVVLPYMKHGDLRNFIRNETH  187 (373)
T ss_dssp             CEEEEECCTTCBHHHHHHCTTC
T ss_pred             eEEEEECCCCCCHHHHHhhccc
Confidence            8999999999999999976543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.00  E-value=3.1e-10  Score=113.18  Aligned_cols=92  Identities=26%  Similarity=0.407  Sum_probs=76.4

Q ss_pred             CCcCceeecCCceeEEEEEEC----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           50 FSASNMIGQGSFGFVYKGKLG----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      |++.+.||+|+||.||+|.+.    .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+   .....
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~  109 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCED---AGAAS  109 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---TTTTE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEec---CCCce
Confidence            488999999999999888653    467899999997653 3445678999999999999999999998764   23567


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .++||||+++|+|.+++...
T Consensus       110 ~~lv~e~~~~~~L~~~l~~~  129 (318)
T 3lxp_A          110 LQLVMEYVPLGSLRDYLPRH  129 (318)
T ss_dssp             EEEEECCCTTCBHHHHGGGS
T ss_pred             EEEEEecccCCcHHHHHhhC
Confidence            89999999999999998654

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.00  E-value=3.2e-10  Score=124.51  Aligned_cols=95  Identities=22%  Similarity=0.299  Sum_probs=81.7

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..++|++.+.||+|+||.||+|++..+++.||||+++..   .....+.+.+|..++..+ .||+|++++++     +++
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~-----~~~  413 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSC-----FQT  413 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEE-----CBC
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEE-----EEe
Confidence            457899999999999999999999999999999999754   234556788999999988 69999999998     556


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ....|+||||+++|+|.+++....
T Consensus       414 ~~~~~lV~E~~~gg~L~~~l~~~~  437 (674)
T 3pfq_A          414 MDRLYFVMEYVNGGDLMYHIQQVG  437 (674)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHS
T ss_pred             CCEEEEEEeCcCCCcHHHHHHhcC
Confidence            889999999999999999987543

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.99  E-value=4.3e-10  Score=110.30  Aligned_cols=94  Identities=20%  Similarity=0.418  Sum_probs=77.2

Q ss_pred             hCCCCcCc-eeecCCceeEEEEEEC--CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASN-MIGQGSFGFVYKGKLG--ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~-~iG~G~~g~V~~~~~~--~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .++|.+.+ .||+|+||.||+|.+.  .+++.||+|+++... ....+.+.+|++++++++||||+++++++.      .
T Consensus         8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~   81 (287)
T 1u59_A            8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------A   81 (287)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE------S
T ss_pred             HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec------C
Confidence            45677766 8999999999999864  467789999997643 345677999999999999999999999863      4


Q ss_pred             ceeeeeecccccCCchhhhhcccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ...++||||+++++|.+++.....
T Consensus        82 ~~~~lv~e~~~~~~L~~~l~~~~~  105 (287)
T 1u59_A           82 EALMLVMEMAGGGPLHKFLVGKRE  105 (287)
T ss_dssp             SSEEEEEECCTTEEHHHHHTTCTT
T ss_pred             CCcEEEEEeCCCCCHHHHHHhCCc
Confidence            568999999999999999865443

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=98.99  E-value=6.2e-10  Score=111.92  Aligned_cols=95  Identities=27%  Similarity=0.473  Sum_probs=75.2

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHH--HhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEA--LSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~--l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..++|++.+.||+|+||.||+|++  +++.||+|++.....   ..+..|.++  +..++||||+++++.+.........
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~   85 (336)
T 3g2f_A           11 DLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRM   85 (336)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCE
T ss_pred             ChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccCCCc
Confidence            457899999999999999999988  789999999975432   344445444  4457999999999876554455566


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..++|||||++|+|.+++....
T Consensus        86 ~~~lv~e~~~~g~L~~~l~~~~  107 (336)
T 3g2f_A           86 EYLLVMEYYPNGSLXKYLSLHT  107 (336)
T ss_dssp             EEEEEECCCTTCBHHHHHHHCC
T ss_pred             eEEEEEecCCCCcHHHHHhhcc
Confidence            7899999999999999996544

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=98.99  E-value=2.7e-10  Score=111.41  Aligned_cols=94  Identities=22%  Similarity=0.415  Sum_probs=77.3

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCC---CcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGET---GTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ..++|.+.+.||+|+||.||+|++...   +..||+|.+... .....+.+.+|+.+++.++||||+++++++.      
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------   83 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIE------   83 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEEC------
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEc------
Confidence            356799999999999999999997533   346999998764 2344577999999999999999999999853      


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ....++||||+++++|.+++....
T Consensus        84 ~~~~~~v~e~~~~~~L~~~l~~~~  107 (281)
T 3cc6_A           84 EEPTWIIMELYPYGELGHYLERNK  107 (281)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHHT
T ss_pred             CCCCEEEEecCCCCCHHHHHHhcc
Confidence            345689999999999999997644

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=98.99  E-value=4.7e-10  Score=110.69  Aligned_cols=95  Identities=19%  Similarity=0.379  Sum_probs=76.6

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCc---EEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGT---TVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~---~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .|...+.||+|+||.||+|.+..+++   .||+|.+.... ....+.+.+|+.++++++||||+++++++.+    ....
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~   97 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP----PEGL   97 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SSSC
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec----CCCC
Confidence            45667899999999999999765554   79999987543 3455788999999999999999999998643    2344


Q ss_pred             eeeeecccccCCchhhhhccccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      .+++|||+.+|++.+++......
T Consensus        98 ~~~v~e~~~~~~L~~~~~~~~~~  120 (298)
T 3pls_A           98 PHVLLPYMCHGDLLQFIRSPQRN  120 (298)
T ss_dssp             CEEEECCCTTCBHHHHHHCTTCC
T ss_pred             cEEEEecccCCCHHHHHhccccC
Confidence            58999999999999999764433

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=98.99  E-value=4.1e-10  Score=122.42  Aligned_cols=86  Identities=21%  Similarity=0.413  Sum_probs=72.3

Q ss_pred             eeecCCceeEEEEEECC--CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeecc
Q 042887           55 MIGQGSFGFVYKGKLGE--TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEY  131 (628)
Q Consensus        55 ~iG~G~~g~V~~~~~~~--~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~  131 (628)
                      .||+|+||.||+|.+..  ++..||||+++... ....+.+.+|+.+|++++|||||++++++.      ....++||||
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~------~~~~~lv~E~  416 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------AEALMLVMEM  416 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEE------SSSEEEEEEC
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEec------cCCeEEEEEe
Confidence            79999999999998753  45679999997643 345678999999999999999999999864      2458999999


Q ss_pred             cccCCchhhhhcccc
Q 042887          132 MKCGSSEDWMHQSND  146 (628)
Q Consensus       132 ~~~g~L~~~l~~~~~  146 (628)
                      |++|+|.+++.....
T Consensus       417 ~~~g~L~~~l~~~~~  431 (613)
T 2ozo_A          417 AGGGPLHKFLVGKRE  431 (613)
T ss_dssp             CTTCBHHHHHTTCTT
T ss_pred             CCCCcHHHHHhhccC
Confidence            999999999975543

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=98.99  E-value=3.3e-10  Score=115.16  Aligned_cols=96  Identities=21%  Similarity=0.275  Sum_probs=72.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||||++...  .....+++.+|+.+++.++||||+++++++... .++...
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            47899999999999999999999999999999999653  233456788999999999999999999987541 223346


Q ss_pred             eeeeeecccccCCchhhhhc
Q 042887          124 FKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ..|+|+|++ +++|.+++..
T Consensus       108 ~~~lv~e~~-~~~L~~~~~~  126 (367)
T 2fst_X          108 DVYLVTHLM-GADLNNIVKC  126 (367)
T ss_dssp             CCEEEEECC-CEECC-----
T ss_pred             eEEEEeccc-CCCHHHHHhc
Confidence            789999999 6788888754

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=98.99  E-value=2.1e-10  Score=112.85  Aligned_cols=93  Identities=20%  Similarity=0.426  Sum_probs=76.2

Q ss_pred             HhCCCCcCc-eeecCCceeEEEEEE--CCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           46 ATNNFSASN-MIGQGSFGFVYKGKL--GETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        46 ~~~~~~~~~-~iG~G~~g~V~~~~~--~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      ..++|.+.+ .||+|+||.||+|.+  ..+++.||+|++....  ....+.+.+|+.+++.++||||+++++++.     
T Consensus        14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----   88 (291)
T 1xbb_A           14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-----   88 (291)
T ss_dssp             CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----
T ss_pred             cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC-----
Confidence            346788887 999999999999954  5567899999997543  233567999999999999999999999862     


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                       ....++||||+++++|.+++...
T Consensus        89 -~~~~~lv~e~~~~~~L~~~l~~~  111 (291)
T 1xbb_A           89 -AESWMLVMEMAELGPLNKYLQQN  111 (291)
T ss_dssp             -SSSEEEEEECCTTEEHHHHHHHC
T ss_pred             -CCCcEEEEEeCCCCCHHHHHHhC
Confidence             46689999999999999998754

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=98.98  E-value=2.4e-10  Score=115.75  Aligned_cols=93  Identities=22%  Similarity=0.308  Sum_probs=78.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc----cchhhhHHHHHHHHhhc-CCCCcccccceeeecc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNV-RHRNLIKIITVCSSID  118 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~  118 (628)
                      .++|++.+.||+|+||.||+|++.   .+|+.||||+++...    ....+.+.+|+.+++++ .||||+++++++.   
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~---  129 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ---  129 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEE---
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEe---
Confidence            368999999999999999999984   478999999986532    23446678899999999 6999999999854   


Q ss_pred             ccccceeeeeecccccCCchhhhhcc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                        .....++||||+++|+|.+++...
T Consensus       130 --~~~~~~lv~e~~~~~~L~~~l~~~  153 (355)
T 1vzo_A          130 --TETKLHLILDYINGGELFTHLSQR  153 (355)
T ss_dssp             --ETTEEEEEECCCCSCBHHHHHHHH
T ss_pred             --eCceEEEEeecCCCCCHHHHHHHc
Confidence              467899999999999999998654

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=98.98  E-value=5.3e-10  Score=112.40  Aligned_cols=96  Identities=18%  Similarity=0.309  Sum_probs=80.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecc---cccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSID---FKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~---~~~~  122 (628)
                      ..+|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|+.+++++. ||||+++++++....   ....
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~  106 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ  106 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence            357999999999999999999999999999999987665556678899999999996 999999999875311   1345


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...+++|||+. |++.+++..
T Consensus       107 ~~~~lv~e~~~-g~L~~~l~~  126 (337)
T 3ll6_A          107 AEFLLLTELCK-GQLVEFLKK  126 (337)
T ss_dssp             EEEEEEEECCS-EEHHHHHHH
T ss_pred             ceEEEEEEecC-CCHHHHHHH
Confidence            67899999997 688888864

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=98.98  E-value=4e-10  Score=114.76  Aligned_cols=91  Identities=13%  Similarity=0.206  Sum_probs=74.6

Q ss_pred             HHhCCCCcCceeecCCceeEEEEE-----ECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC---CCCcccccceeee
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGK-----LGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR---HRNLIKIITVCSS  116 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~-----~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~  116 (628)
                      ...++|.+.+.||+|+||.||+|.     ...+++.||+|++....   ...+.+|+.+++.++   |+||+++++++. 
T Consensus        62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~-  137 (365)
T 3e7e_A           62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHL-  137 (365)
T ss_dssp             CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEE-
T ss_pred             ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeee-
Confidence            345779999999999999999994     56788999999987543   356778888888886   999999999864 


Q ss_pred             ccccccceeeeeecccccCCchhhhhc
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                          ..+..|+|||||++|+|.+++..
T Consensus       138 ----~~~~~~lv~e~~~~g~L~~~l~~  160 (365)
T 3e7e_A          138 ----FQNGSVLVGELYSYGTLLNAINL  160 (365)
T ss_dssp             ----CSSCEEEEECCCCSCBHHHHHHH
T ss_pred             ----cCCCcEEEEeccCCCcHHHHHHH
Confidence                36788999999999999999975

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=98.97  E-value=4.5e-10  Score=115.64  Aligned_cols=93  Identities=15%  Similarity=0.238  Sum_probs=74.5

Q ss_pred             hCCCCcC-ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccce
Q 042887           47 TNNFSAS-NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~-~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|.+. +.||+|+||.||+|.+..+|+.||||++...     ..+.+|+.++.+. +||||+++++++... +.+...
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~-~~~~~~  133 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC  133 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeec-ccCCcE
Confidence            3566665 6899999999999999999999999998632     4567888887544 799999999986431 233567


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+|||||++|+|.+++....
T Consensus       134 ~~lv~E~~~gg~L~~~l~~~~  154 (400)
T 1nxk_A          134 LLIVMECLDGGELFSRIQDRG  154 (400)
T ss_dssp             EEEEEECCCSEEHHHHHHCC-
T ss_pred             EEEEEEeCCCCcHHHHHHHhC
Confidence            899999999999999997643

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=98.97  E-value=7.4e-10  Score=112.96  Aligned_cols=95  Identities=19%  Similarity=0.246  Sum_probs=78.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++...  .....+.+.+|+.+++.++||||+++++++... .++...
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            46899999999999999999999999999999999753  233456788999999999999999999987541 123345


Q ss_pred             eeeeeecccccCCchhhhh
Q 042887          124 FKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~  142 (628)
                      ..|+||||+++ ++.+++.
T Consensus       104 ~~~lv~e~~~~-~l~~~~~  121 (371)
T 2xrw_A          104 DVYIVMELMDA-NLCQVIQ  121 (371)
T ss_dssp             EEEEEEECCSE-EHHHHHH
T ss_pred             ceEEEEEcCCC-CHHHHHh
Confidence            78999999985 6777664

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=98.97  E-value=6.5e-10  Score=111.21  Aligned_cols=96  Identities=25%  Similarity=0.477  Sum_probs=78.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEE----EEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTV----AVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~----avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      .++|++.+.||+|+||.||+|++..+++.+    |+|.+... .....+.+.+|+.+++.++||||+++++++..     
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----   88 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT-----   88 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES-----
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec-----
Confidence            467999999999999999999998888765    55555432 23455779999999999999999999998653     


Q ss_pred             cceeeeeecccccCCchhhhhcccccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                       ...++++||+++|++.+++......+
T Consensus        89 -~~~~~v~~~~~~g~L~~~l~~~~~~~  114 (327)
T 3lzb_A           89 -STVQLITQLMPFGCLLDYVREHKDNI  114 (327)
T ss_dssp             -SSEEEEECCCSSCBHHHHHHHTTTCC
T ss_pred             -CCceEEEEecCCCcHHHHHHhcCCCC
Confidence             34789999999999999997654433

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=98.97  E-value=1.5e-10  Score=124.60  Aligned_cols=99  Identities=20%  Similarity=0.357  Sum_probs=80.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeee-ccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSS-IDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|++... .....+.+.+|++++++++||||+++++++.. ..+.....
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence            47899999999999999999999999999999998654 33445779999999999999999999988643 11233677


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .++|||||++|+|.+++....
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~~  113 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQFE  113 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSSS
T ss_pred             EEEEEEeCCCCCHHHHHHhcc
Confidence            899999999999999997644

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=98.97  E-value=5.4e-10  Score=113.09  Aligned_cols=98  Identities=21%  Similarity=0.419  Sum_probs=77.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc---ccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID---FKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~---~~~  121 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....  ......+.+|+.+++.++||||+++++++....   ...
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            467999999999999999999999999999999986543  233457889999999999999999999876521   111


Q ss_pred             cceeeeeecccccCCchhhhhccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ....++||||+++ ++.+.+....
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~~  118 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNVL  118 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCTT
T ss_pred             CceEEEEEeccCC-CHHHHHhhcc
Confidence            4578999999986 6766665543

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=98.96  E-value=9.2e-10  Score=110.92  Aligned_cols=102  Identities=25%  Similarity=0.393  Sum_probs=80.6

Q ss_pred             cccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhh--cCCCCccccccee
Q 042887           37 MVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSN--VRHRNLIKIITVC  114 (628)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~--l~h~nIv~l~~~~  114 (628)
                      ..+........++|++.+.||+|+||.||+|++  +|+.||+|++...   ....+.+|++++..  ++||||+++++++
T Consensus        31 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~  105 (342)
T 1b6c_B           31 GLPLLVQRTIARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAAD  105 (342)
T ss_dssp             SSCHHHHHHHHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEE
T ss_pred             CCceeecccccccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeee
Confidence            344444455667899999999999999999999  6899999998643   23567889998887  6899999999986


Q ss_pred             eeccccccceeeeeecccccCCchhhhhcc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .... ......++||||+++|+|.+++.+.
T Consensus       106 ~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~  134 (342)
T 1b6c_B          106 NKDN-GTWTQLWLVSDYHEHGSLFDYLNRY  134 (342)
T ss_dssp             ECCC-SSCCCEEEEECCCTTCBHHHHHHHC
T ss_pred             cccC-CccceeEEEEeecCCCcHHHHHhcc
Confidence            5411 1113789999999999999999653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=2.7e-10  Score=114.58  Aligned_cols=85  Identities=18%  Similarity=0.236  Sum_probs=48.6

Q ss_pred             ccCCCCEeeCcCCcCcccCCcccc---CCCCCCeEECcCceeeee----cCccccCCCCCCEEECCCCcccccCchhhhc
Q 042887          484 NLRNLAEFDLSENHFSNEIPVTLS---ACTTLEYLHLQGNSFSGS----LPLSLKTLKSIKELDLSRNNLSGQIPKYLEN  556 (628)
Q Consensus       484 ~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  556 (628)
                      .+++|++|+|++|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.|+...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            356777777777776543322222   356777777777776653    2333345677777777777766443334443


Q ss_pred             ccCCCeEeccCCc
Q 042887          557 LLFLAYLNLSYNH  569 (628)
Q Consensus       557 l~~L~~L~ls~N~  569 (628)
                      .- ...++++.|+
T Consensus       330 al-g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL-PMKIDVSDSQ  341 (362)
T ss_dssp             HC-CSEEECCSBC
T ss_pred             Hc-CCEEEecCCc
Confidence            11 3456776665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.96  E-value=4.1e-10  Score=124.36  Aligned_cols=97  Identities=20%  Similarity=0.292  Sum_probs=76.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECC-CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGE-TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~-~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|.+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++...+......
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            4789999999999999999999975 68999999986542 334567899999999999999999999876532222233


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .|+||||+++++|.+++..
T Consensus       159 ~~lv~E~~~g~~L~~~~~~  177 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQ  177 (681)
T ss_dssp             EEEEEECCCCEECC----C
T ss_pred             eEEEEEeCCCCcHHHHHhC
Confidence            7999999999999887654

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=98.95  E-value=1.9e-10  Score=117.64  Aligned_cols=97  Identities=15%  Similarity=0.121  Sum_probs=72.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHH---HHhhcCCCCcccccceeee--cc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECE---ALSNVRHRNLIKIITVCSS--ID  118 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~---~l~~l~h~nIv~l~~~~~~--~~  118 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||||++...   .....+.+.+|+.   .+++++|||||++++.+..  ..
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            35688899999999999999999889999999999743   2345577899994   5556679999999854321  00


Q ss_pred             ccccc-----------------eeeeeecccccCCchhhhhcc
Q 042887          119 FKGVD-----------------FKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       119 ~~~~~-----------------~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++..+                 ..|+||||+ +|+|.+++...
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~  193 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVL  193 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHH
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhc
Confidence            11111                 378999999 57999999754

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=98.95  E-value=8.2e-10  Score=109.02  Aligned_cols=93  Identities=15%  Similarity=0.255  Sum_probs=76.1

Q ss_pred             hCCCCcC-ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHH-hhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSAS-NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL-SNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~-~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l-~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|.+. +.||+|+||.||+|.+..+++.||+|++..     ...+.+|+.++ +..+||||+++++++... ......
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~   89 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC   89 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCce
Confidence            4567776 789999999999999999999999999864     24567888887 555899999999986531 223577


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .++||||+++|+|.+++....
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~  110 (299)
T 3m2w_A           90 LLIVMECLDGGELFSRIQDRG  110 (299)
T ss_dssp             EEEEECCCCSCBHHHHHHHCT
T ss_pred             EEEEEeecCCCcHHHHHHhcc
Confidence            899999999999999997643

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=98.94  E-value=1.1e-09  Score=110.04  Aligned_cols=99  Identities=27%  Similarity=0.367  Sum_probs=76.2

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc--CCCCcccccceeeec
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV--RHRNLIKIITVCSSI  117 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l--~h~nIv~l~~~~~~~  117 (628)
                      ........++|++.+.||+|+||.||+|++  +|+.||+|++....   ...+.+|.+++...  +||||+++++++...
T Consensus        29 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~  103 (337)
T 3mdy_A           29 LLVQRTIAKQIQMVKQIGKGRYGEVWMGKW--RGEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKG  103 (337)
T ss_dssp             HHHHTTHHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEES
T ss_pred             cccccccccceEEEeEeecCCCeEEEEEEE--CCceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccC
Confidence            333444567899999999999999999998  48999999986432   24455666666555  899999999987641


Q ss_pred             cccccceeeeeecccccCCchhhhhcc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                       .......++||||+++|+|.+++...
T Consensus       104 -~~~~~~~~lv~e~~~~g~L~~~l~~~  129 (337)
T 3mdy_A          104 -TGSWTQLYLITDYHENGSLYDYLKST  129 (337)
T ss_dssp             -CGGGCEEEEEECCCTTCBHHHHHHHC
T ss_pred             -CCCCCceEEEEeccCCCcHHHHhhcc
Confidence             11226789999999999999999643

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=98.94  E-value=6e-10  Score=109.41  Aligned_cols=95  Identities=28%  Similarity=0.437  Sum_probs=76.4

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ...++|++.+.||+|+||.||+|++.   ..||+|+++...  ....+.+.+|+.++++++||||+++++++      ..
T Consensus        21 i~~~~y~~~~~lG~G~~g~Vy~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~------~~   91 (289)
T 3og7_A           21 IPDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS------TA   91 (289)
T ss_dssp             CCTTSCEEEEEEEECSSEEEEEEESS---SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE------CS
T ss_pred             cCccceeeeeEecCCCCeEEEEEEEc---CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec------cC
Confidence            34578999999999999999999873   359999997543  34457799999999999999999998864      24


Q ss_pred             ceeeeeecccccCCchhhhhcccccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      ...++||||++++++.+++.......
T Consensus        92 ~~~~lv~e~~~~~~L~~~l~~~~~~~  117 (289)
T 3og7_A           92 PQLAIVTQWCEGSSLYHHLHASETKF  117 (289)
T ss_dssp             SSCEEEEECCCEEEHHHHHTTC---C
T ss_pred             CccEEEEEecCCCcHHHHHhhccCCC
Confidence            56899999999999999986554433

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=98.94  E-value=1.3e-09  Score=107.57  Aligned_cols=92  Identities=17%  Similarity=0.243  Sum_probs=79.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....  ..+.+.+|+.+++.+ .|++++++++++.     .....
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~-----~~~~~   81 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQ-----EGLHN   81 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEE-----ETTEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecC-----CCcee
Confidence            467999999999999999999999999999999986533  345688999999999 6999999998854     47788


Q ss_pred             eeeecccccCCchhhhhcccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      ++||||+ +++|.+++.....
T Consensus        82 ~lv~e~~-~~~L~~~l~~~~~  101 (298)
T 1csn_A           82 VLVIDLL-GPSLEDLLDLCGR  101 (298)
T ss_dssp             EEEEECC-CCBHHHHHHHTTT
T ss_pred             EEEEEec-CCCHHHHHHHhcc
Confidence            9999999 9999999976543

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=98.93  E-value=3.9e-10  Score=112.07  Aligned_cols=97  Identities=19%  Similarity=0.285  Sum_probs=72.8

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhc----CCCCcccccc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNV----RHRNLIKIIT  112 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l----~h~nIv~l~~  112 (628)
                      .....++|++.+.||+|+||.||+|++..+++.||+|++.....      .....+.+|+.++.++    +||||+++++
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~  105 (312)
T 2iwi_A           26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD  105 (312)
T ss_dssp             -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred             hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence            34446789999999999999999999999999999999965432      2335577899999998    8999999999


Q ss_pred             eeeeccccccceeeeeecc-cccCCchhhhhcc
Q 042887          113 VCSSIDFKGVDFKALIYEY-MKCGSSEDWMHQS  144 (628)
Q Consensus       113 ~~~~~~~~~~~~~~lv~e~-~~~g~L~~~l~~~  144 (628)
                      ++     ......++|||+ +.+++|.+++...
T Consensus       106 ~~-----~~~~~~~~v~e~~~~~~~L~~~l~~~  133 (312)
T 2iwi_A          106 WF-----ETQEGFMLVLERPLPAQDLFDYITEK  133 (312)
T ss_dssp             EC----------CEEEEECCSSEEEHHHHHHHH
T ss_pred             EE-----ecCCeEEEEEEecCCCCCHHHHHHhc
Confidence            84     446788999999 7899999998753

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=98.93  E-value=2.1e-10  Score=114.37  Aligned_cols=100  Identities=22%  Similarity=0.417  Sum_probs=82.3

Q ss_pred             ccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceee
Q 042887           38 VSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCS  115 (628)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~  115 (628)
                      ....++....++|++.+.||+|+||.||+|.+..   .+|+|++....  ....+.+.+|+.++++++||||+++++++.
T Consensus        23 ~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   99 (319)
T 2y4i_B           23 IFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACM   99 (319)
T ss_dssp             CCGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEE
T ss_pred             cccccccCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEe
Confidence            3345555667899999999999999999999843   49999987542  334467889999999999999999999965


Q ss_pred             eccccccceeeeeecccccCCchhhhhccc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +     ....++||||+++++|.+++....
T Consensus       100 ~-----~~~~~iv~e~~~~~~L~~~l~~~~  124 (319)
T 2y4i_B          100 S-----PPHLAIITSLCKGRTLYSVVRDAK  124 (319)
T ss_dssp             C-----SSCEEEECBCCCSEEHHHHTTSSC
T ss_pred             c-----CCceEEEeecccCCcHHHHHHhcC
Confidence            3     677999999999999999997654

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=98.92  E-value=1.4e-09  Score=110.25  Aligned_cols=95  Identities=20%  Similarity=0.296  Sum_probs=76.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc-ccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~~~  123 (628)
                      .++|.+.+.||+|+||.||+|.+..+|+.||||++....  ....+.+.+|+.+++.++||||+++++++.... .....
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            367999999999999999999999999999999996542  334567899999999999999999999865411 11123


Q ss_pred             eeeeeecccccCCchhhhh
Q 042887          124 FKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~  142 (628)
                      ..|+||||+. |++.+++.
T Consensus       103 ~~~lv~e~~~-~~l~~~~~  120 (353)
T 3coi_A          103 DFYLVMPFMQ-TDLQKIMG  120 (353)
T ss_dssp             CCEEEEECCS-EEGGGTTT
T ss_pred             eEEEEecccc-CCHHHHhc
Confidence            4699999998 57877764

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=98.92  E-value=1.1e-09  Score=111.54  Aligned_cols=95  Identities=20%  Similarity=0.296  Sum_probs=76.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc-ccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~~~  123 (628)
                      .++|.+.+.||+|+||.||+|.+..+|+.||+|++....  ....+.+.+|+.+++.++||||+++++++.... .....
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            468999999999999999999999999999999997542  334577899999999999999999999975411 11122


Q ss_pred             eeeeeecccccCCchhhhh
Q 042887          124 FKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~  142 (628)
                      ..++||||+. |++.+++.
T Consensus       121 ~~~lv~e~~~-~~l~~~~~  138 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIMG  138 (371)
T ss_dssp             CCEEEEECCC-EEHHHHTT
T ss_pred             eEEEEEcccc-ccHHHHhh
Confidence            3499999998 57777664

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=98.92  E-value=1.3e-09  Score=118.83  Aligned_cols=85  Identities=22%  Similarity=0.461  Sum_probs=70.9

Q ss_pred             ceeecCCceeEEEEEE--CCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKL--GETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~--~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|.+  ..+++.||||+++...  ....+.+.+|+.+|++++|||||++++++.      ....++||
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~------~~~~~lv~  448 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE------AESWMLVM  448 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE------SSSEEEEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe------cCCEEEEE
Confidence            3699999999999965  3566889999997643  334578999999999999999999999864      34578999


Q ss_pred             cccccCCchhhhhcc
Q 042887          130 EYMKCGSSEDWMHQS  144 (628)
Q Consensus       130 e~~~~g~L~~~l~~~  144 (628)
                      |||++|+|.+++...
T Consensus       449 E~~~~g~L~~~l~~~  463 (635)
T 4fl3_A          449 EMAELGPLNKYLQQN  463 (635)
T ss_dssp             ECCTTEEHHHHHHHC
T ss_pred             EccCCCCHHHHHhhC
Confidence            999999999999643

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=98.91  E-value=9.9e-10  Score=107.85  Aligned_cols=91  Identities=15%  Similarity=0.169  Sum_probs=71.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-c-chhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-K-GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++.... . ...+.+.++...++.+.||||+++++++.     ....
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~-----~~~~   80 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----REGD   80 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSS
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeee-----ccCC
Confidence            468999999999999999999999999999999997542 2 22233444455578889999999999964     4678


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .++||||+++ ++.+++..
T Consensus        81 ~~lv~e~~~~-~l~~~l~~   98 (290)
T 3fme_A           81 VWICMELMDT-SLDKFYKQ   98 (290)
T ss_dssp             EEEEEECCSE-EHHHHHHH
T ss_pred             EEEEEehhcc-chHHHHHH
Confidence            8999999985 77777654

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=98.90  E-value=1.8e-09  Score=108.04  Aligned_cols=99  Identities=21%  Similarity=0.413  Sum_probs=78.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEEC-CCCcEEEEEEeeccc--cchhhhHHHHHHHHhhc---CCCCcccccceeeeccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLG-ETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNV---RHRNLIKIITVCSSIDF  119 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~-~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l---~h~nIv~l~~~~~~~~~  119 (628)
                      ..++|++.+.||+|+||.||+|++. .+|+.||+|++....  ......+.+|+.+++.+   .||||+++++++.....
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            3468999999999999999999995 678899999997543  22345678888888777   89999999998763223


Q ss_pred             cccceeeeeecccccCCchhhhhccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ......++||||+. |++.+++....
T Consensus        89 ~~~~~~~lv~e~~~-~~L~~~l~~~~  113 (326)
T 1blx_A           89 DRETKLTLVFEHVD-QDLTTYLDKVP  113 (326)
T ss_dssp             SSEEEEEEEEECCS-CBHHHHHHHSC
T ss_pred             CCCceEEEEEecCC-CCHHHHHHhcc
Confidence            35678999999998 59998886543

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=98.90  E-value=9.3e-10  Score=120.39  Aligned_cols=96  Identities=20%  Similarity=0.312  Sum_probs=78.6

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCC---CcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGET---GTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      ....++|++.+.||+|+||.||+|.+..+   +..||+|...... ....+.+.+|+.++++++||||+++++++.    
T Consensus       386 ~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~----  461 (656)
T 2j0j_A          386 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT----  461 (656)
T ss_dssp             BCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred             ccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe----
Confidence            33456788889999999999999998654   4569999986543 344577999999999999999999999853    


Q ss_pred             cccceeeeeecccccCCchhhhhccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                        .+..|+||||+++|+|.+++....
T Consensus       462 --~~~~~lv~E~~~~g~L~~~l~~~~  485 (656)
T 2j0j_A          462 --ENPVWIIMELCTLGELRSFLQVRK  485 (656)
T ss_dssp             --SSSCEEEEECCTTCBHHHHHHHTT
T ss_pred             --cCceEEEEEcCCCCcHHHHHHhcc
Confidence              356899999999999999997544

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=98.90  E-value=1.3e-09  Score=111.82  Aligned_cols=91  Identities=16%  Similarity=0.266  Sum_probs=76.1

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcC--CCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVR--HRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~--h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..|++.+.||+|+||.||+|.+.. ++.||||++....  ....+.+.+|+.+|++++  ||||+++++++.     ...
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~-----~~~  129 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----TDQ  129 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSS
T ss_pred             CceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEe-----cCC
Confidence            459999999999999999999864 8999999997543  344577999999999997  599999999864     367


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+||| +.+++|.+++....
T Consensus       130 ~~~lv~E-~~~~~L~~~l~~~~  150 (390)
T 2zmd_A          130 YIYMVME-CGNIDLNSWLKKKK  150 (390)
T ss_dssp             EEEEEEE-CCSEEHHHHHHHCS
T ss_pred             EEEEEEe-cCCCCHHHHHHhcC
Confidence            7999999 67789999987543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=110.09  Aligned_cols=91  Identities=18%  Similarity=0.276  Sum_probs=76.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCC--CCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRH--RNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h--~nIv~l~~~~~~~~~~~~  122 (628)
                      .+.|++.+.||+|+||.||+|.+ .+++.||+|++....  ....+.+.+|+.++++++|  |||+++++++.     ..
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~-----~~   81 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----TD   81 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEEC-TTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CS
T ss_pred             cCEEEEEEEEecCCCeEEEEEEe-CCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEe-----eC
Confidence            35699999999999999999998 468999999997543  3345678999999999986  99999999854     47


Q ss_pred             ceeeeeecccccCCchhhhhcc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ...|+||| +.+|+|.+++...
T Consensus        82 ~~~~lv~e-~~~~~L~~~l~~~  102 (343)
T 3dbq_A           82 QYIYMVME-CGNIDLNSWLKKK  102 (343)
T ss_dssp             SEEEEEEC-CCSEEHHHHHHHS
T ss_pred             CEEEEEEe-CCCCCHHHHHHhc
Confidence            78999999 5678999998754

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=98.89  E-value=2.2e-09  Score=107.36  Aligned_cols=91  Identities=15%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHH-HHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECE-ALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~-~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|++.... ......+.+|+. +++.++||||+++++++.     ..+
T Consensus        20 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~-----~~~   94 (327)
T 3aln_A           20 TAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALF-----REG   94 (327)
T ss_dssp             CSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEE-----CSS
T ss_pred             CHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEE-----eCC
Confidence            3578999999999999999999999899999999997643 233455666766 677789999999999964     367


Q ss_pred             eeeeeecccccCCchhhhh
Q 042887          124 FKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~  142 (628)
                      ..++||||+++ ++.+++.
T Consensus        95 ~~~lv~e~~~~-~l~~~~~  112 (327)
T 3aln_A           95 DCWICMELMST-SFDKFYK  112 (327)
T ss_dssp             EEEEEECCCSE-EHHHHHH
T ss_pred             ceEEEEeecCC-ChHHHHH
Confidence            88999999996 7776665

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=98.87  E-value=2.9e-09  Score=108.12  Aligned_cols=100  Identities=21%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF  119 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~  119 (628)
                      ........++|++.+.||+|+||.||+|++..+|+.||||++.... .....+.+|+..++.++||||+++++++.....
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~   93 (360)
T 3e3p_A           15 DERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE   93 (360)
T ss_dssp             SHHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred             hhhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence            3445667789999999999999999999999999999999986543 234567788888899999999999998765211


Q ss_pred             --cccceeeeeecccccCCchhhh
Q 042887          120 --KGVDFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       120 --~~~~~~~lv~e~~~~g~L~~~l  141 (628)
                        ......++||||++++ +.+.+
T Consensus        94 ~~~~~~~~~lv~e~~~~~-l~~~~  116 (360)
T 3e3p_A           94 RDRRDIYLNVVMEYVPDT-LHRCC  116 (360)
T ss_dssp             SCTTCEEEEEEEECCSCB-HHHHH
T ss_pred             ccccceeEEEEeeccccc-HHHHH
Confidence              1233478999999974 44333

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=98.87  E-value=1e-09  Score=107.87  Aligned_cols=93  Identities=29%  Similarity=0.484  Sum_probs=69.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECC-CCc--EEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGE-TGT--TVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~-~~~--~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .++|++.+.||+|+||.||+|++.. +++  .||+|+++..   .....+.+.+|+.++++++||||+++++++..    
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----   92 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT----   92 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc----
Confidence            4579999999999999999998643 333  5899998654   23445778999999999999999999998642    


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                        ...++||||+++|++.+++....
T Consensus        93 --~~~~~v~e~~~~~~L~~~l~~~~  115 (291)
T 1u46_A           93 --PPMKMVTELAPLGSLLDRLRKHQ  115 (291)
T ss_dssp             --SSCEEEEECCTTCBHHHHHHHHG
T ss_pred             --CCceeeEecccCCCHHHHHHhcc
Confidence              34789999999999999987654

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=98.86  E-value=2.3e-09  Score=111.13  Aligned_cols=90  Identities=23%  Similarity=0.392  Sum_probs=71.1

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~~~~  126 (628)
                      ..|++.+.||+|+||.||+|++..+|+.||||++....    ....+|+++|++++|||||++++++... ...+....+
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            36899999999999999999999999999999986532    2334799999999999999999987542 112334577


Q ss_pred             eeecccccCCchhhhh
Q 042887          127 LIYEYMKCGSSEDWMH  142 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~  142 (628)
                      +||||+++ ++.+.+.
T Consensus       130 lv~e~~~~-~l~~~~~  144 (420)
T 1j1b_A          130 LVLDYVPE-TVYRVAR  144 (420)
T ss_dssp             EEEECCCE-EHHHHHH
T ss_pred             eehhcccc-cHHHHHH
Confidence            99999986 5555543

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.86  E-value=3.1e-09  Score=104.64  Aligned_cols=93  Identities=25%  Similarity=0.349  Sum_probs=77.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++....  ..+.+.+|+.+++.++|++++..+..+.    ......+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~~~   81 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDYNV   81 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEE----EETTEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCcccccc----CCCCceE
Confidence            468999999999999999999999999999999986543  2356889999999999988877766553    2467889


Q ss_pred             eeecccccCCchhhhhcccc
Q 042887          127 LIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~  146 (628)
                      +||||+ +++|.+++.....
T Consensus        82 lv~e~~-~~~L~~~~~~~~~  100 (296)
T 3uzp_A           82 MVMELL-GPSLEDLFNFCSR  100 (296)
T ss_dssp             EEEECC-CCBHHHHHHHTTT
T ss_pred             EEEEec-CCCHHHHHHhhcc
Confidence            999999 8999999875443

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.85  E-value=3.1e-09  Score=104.64  Aligned_cols=95  Identities=25%  Similarity=0.353  Sum_probs=75.0

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++....  ....+.+|+.+++.++|++++..+..+.    ......
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~~   80 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDYN   80 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEE----EETTEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeec----CCCCce
Confidence            3578999999999999999999999999999999876543  2356889999999999988888777653    346788


Q ss_pred             eeeecccccCCchhhhhccccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      ++||||+ +|+|.+++......
T Consensus        81 ~lv~e~~-~~~L~~~~~~~~~~  101 (296)
T 4hgt_A           81 VMVMELL-GPSLEDLFNFCSRK  101 (296)
T ss_dssp             EEEEECC-CCBHHHHHHHTTSC
T ss_pred             EEEEEcc-CCCHHHHHHHhcCC
Confidence            9999999 89999998754433

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=98.84  E-value=2.2e-09  Score=109.22  Aligned_cols=100  Identities=14%  Similarity=0.202  Sum_probs=75.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCC-----CcEEEEEEeeccccc-----------hhhhHHHHHHHHhhcCCCCcccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGET-----GTTVAVKVMNLKQKG-----------AAKSFVTECEALSNVRHRNLIKI  110 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~-----~~~~avK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~nIv~l  110 (628)
                      .++|++.+.||+|+||.||+|.+..+     ++.||+|++......           ....+.+|+..+..++||||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            45899999999999999999998764     578999998754311           11234556667788899999999


Q ss_pred             cceeeeccccccceeeeeecccccCCchhhhhcccccc
Q 042887          111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       111 ~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      ++++... .......++||||| +|+|.+++......+
T Consensus       114 ~~~~~~~-~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l  149 (364)
T 3op5_A          114 WGSGLHD-KNGKSYRFMIMDRF-GSDLQKIYEANAKRF  149 (364)
T ss_dssp             EEEEEEE-ETTEEEEEEEEECE-EEEHHHHHHHTTSCC
T ss_pred             Eeeeeec-cCCcceEEEEEeCC-CCCHHHHHHhccCCC
Confidence            9987641 12236689999999 999999997654333

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=98.84  E-value=1.4e-09  Score=109.76  Aligned_cols=97  Identities=18%  Similarity=0.214  Sum_probs=72.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECC---CCcEEEEEEeeccccc-----------hhhhHHHHHHHHhhcCCCCcccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGE---TGTTVAVKVMNLKQKG-----------AAKSFVTECEALSNVRHRNLIKIIT  112 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~---~~~~~avK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~nIv~l~~  112 (628)
                      .++|++.+.||+|+||.||+|.+..   ++..||+|+.......           ....+.+|+..++.++||||+++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            3679999999999999999999987   7788999998754311           2234778889999999999999999


Q ss_pred             eeeeccccccceeeeeecccccCCchhhhhccc
Q 042887          113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++... +......|+||||+ +++|.+++....
T Consensus       116 ~~~~~-~~~~~~~~lv~e~~-~~~L~~~l~~~~  146 (345)
T 2v62_A          116 SGLTE-FKGRSYRFMVMERL-GIDLQKISGQNG  146 (345)
T ss_dssp             EEEEE-SSSCEEEEEEEECE-EEEHHHHCBGGG
T ss_pred             ccccc-cCCCcEEEEEEecc-CCCHHHHHHhcC
Confidence            87541 23467899999999 999999987543

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=98.83  E-value=1.5e-09  Score=109.92  Aligned_cols=92  Identities=8%  Similarity=0.089  Sum_probs=71.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECC--------CCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceee---
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGE--------TGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS---  115 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~--------~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~---  115 (628)
                      .++|++.+.||+|+||.||+|++..        .++.||+|++...     +.+.+|++++++++||||+++++...   
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            3689999999999999999999987        3789999998743     46889999999999999998533211   


Q ss_pred             --------eccccccceeeeeecccccCCchhhhhcc
Q 042887          116 --------SIDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       116 --------~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                              ..........++||||+ +|+|.+++...
T Consensus       116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~  151 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVS  151 (352)
T ss_dssp             TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHS
T ss_pred             ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhC
Confidence                    00012357889999999 99999999765

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=98.83  E-value=4.1e-09  Score=108.85  Aligned_cols=91  Identities=22%  Similarity=0.305  Sum_probs=68.3

Q ss_pred             CCCCc-CceeecCCceeEEEEEEC--CCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSA-SNMIGQGSFGFVYKGKLG--ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~-~~~iG~G~~g~V~~~~~~--~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      +.|++ .++||+|+||.||+|++.  .+++.||+|++....  ....+.+|+.+|++++||||+++++++..   .....
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~---~~~~~   94 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLS---HADRK   94 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEE---TTTTE
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEec---CCCCe
Confidence            44666 458999999999999976  468899999986532  33578899999999999999999999653   34678


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+||||+.+ ++.+++...
T Consensus        95 ~~lv~e~~~~-~l~~~~~~~  113 (405)
T 3rgf_A           95 VWLLFDYAEH-DLWHIIKFH  113 (405)
T ss_dssp             EEEEEECCSE-EHHHHHHHH
T ss_pred             EEEEEeCCCC-CHHHHHHHh
Confidence            9999999985 777777543

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=98.82  E-value=2.5e-09  Score=110.14  Aligned_cols=94  Identities=15%  Similarity=0.209  Sum_probs=75.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC--------CCCcccccceeeecc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR--------HRNLIKIITVCSSID  118 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~--------h~nIv~l~~~~~~~~  118 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++... ....+.+.+|+.+++.++        |+||+++++++... 
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~-  113 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS-  113 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE-
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec-
Confidence            46899999999999999999999999999999999754 234567889999999986        78899999986521 


Q ss_pred             ccccceeeeeecccccCCchhhhhc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      .......++||||+ ++++.+++..
T Consensus       114 ~~~~~~~~lv~e~~-~~~l~~~~~~  137 (397)
T 1wak_A          114 GVNGTHICMVFEVL-GHHLLKWIIK  137 (397)
T ss_dssp             ETTEEEEEEEECCC-CCBHHHHHHH
T ss_pred             CCCCceEEEEEecc-CccHHHHHHh
Confidence            11356889999999 4566555543

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=98.81  E-value=4.2e-09  Score=105.70  Aligned_cols=94  Identities=19%  Similarity=0.268  Sum_probs=72.0

Q ss_pred             HhCCCCcC-ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHH-HHhhcCCCCcccccceeeeccccccc
Q 042887           46 ATNNFSAS-NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECE-ALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        46 ~~~~~~~~-~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~-~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ..++|++. +.||+|+||.||+|.+..+|+.||+|++....     ...+|+. .++.+.||||+++++++... .....
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~   99 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP-----KARQEVDHHWQASGGPHIVCILDVYENM-HHGKR   99 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH-----HHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH-----HHHHHHHHHHHhcCCCChHHHHHHHhhc-cCCCc
Confidence            35678885 46999999999999999999999999986532     2233333 35667899999999986541 12245


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..++|||||++|+|.+++....
T Consensus       100 ~~~lv~e~~~gg~L~~~l~~~~  121 (336)
T 3fhr_A          100 CLLIIMECMEGGELFSRIQERG  121 (336)
T ss_dssp             EEEEEEECCTTEEHHHHHHTC-
T ss_pred             eEEEEEeccCCCCHHHHHHhcC
Confidence            6899999999999999997654

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=98.81  E-value=6e-09  Score=108.24  Aligned_cols=92  Identities=17%  Similarity=0.282  Sum_probs=75.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc------CCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV------RHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l------~h~nIv~l~~~~~~~~~~  120 (628)
                      ..+|++.+.||+|+||.||+|.+..+++.||||++.... ...+.+.+|+.+++.+      .|+||+++++++..    
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~----  170 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF----  170 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE----
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc----
Confidence            457999999999999999999999999999999997542 2345677888888877      56799999998643    


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       ....++||||+. +++.+++....
T Consensus       171 -~~~~~lv~e~~~-~~L~~~l~~~~  193 (429)
T 3kvw_A          171 -RNHICMTFELLS-MNLYELIKKNK  193 (429)
T ss_dssp             -TTEEEEEECCCC-CBHHHHHHHTT
T ss_pred             -CCeEEEEEeccC-CCHHHHHHhcc
Confidence             678999999997 58888886543

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=98.80  E-value=1.9e-09  Score=107.54  Aligned_cols=97  Identities=20%  Similarity=0.262  Sum_probs=79.8

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcC--CCCccccccee
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVR--HRNLIKIITVC  114 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~--h~nIv~l~~~~  114 (628)
                      .....++|++.+.||+|+||.||+|++..+++.||+|++.....      ...+.+.+|+.++++++  ||||+++++++
T Consensus        38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~  117 (320)
T 3a99_A           38 KEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWF  117 (320)
T ss_dssp             --CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEE
T ss_pred             cCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEE
Confidence            34456789999999999999999999999999999999976432      13356789999999996  59999999995


Q ss_pred             eeccccccceeeeeeccccc-CCchhhhhcc
Q 042887          115 SSIDFKGVDFKALIYEYMKC-GSSEDWMHQS  144 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~  144 (628)
                      .     .....++|||++.+ +++.+++...
T Consensus       118 ~-----~~~~~~lv~e~~~~~~~L~~~l~~~  143 (320)
T 3a99_A          118 E-----RPDSFVLILERPEPVQDLFDFITER  143 (320)
T ss_dssp             E-----CSSEEEEEEECCSSEEEHHHHHHHH
T ss_pred             e-----cCCcEEEEEEcCCCCccHHHHHhcc
Confidence            4     47789999999976 8999988653

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=98.78  E-value=3.9e-09  Score=107.62  Aligned_cols=98  Identities=10%  Similarity=-0.009  Sum_probs=64.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc---chhhhHHHHHHHHhhc--CCCCccccccee-------
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---GAAKSFVTECEALSNV--RHRNLIKIITVC-------  114 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~E~~~l~~l--~h~nIv~l~~~~-------  114 (628)
                      ..+|++.+.||+|+||.||+|++..+|+.||+|++.....   ...+.+.+|+.+++.+  +||||++++..+       
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence            3458999999999999999999999999999999987432   3445677885544444  699988855332       


Q ss_pred             eeccc------------cccceeeeeecccccCCchhhhhccc
Q 042887          115 SSIDF------------KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       115 ~~~~~------------~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .....            ......|+|||||+ |+|.+++....
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~  182 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD  182 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc
Confidence            11000            00145899999999 89999997653

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=98.78  E-value=3.8e-09  Score=106.18  Aligned_cols=92  Identities=16%  Similarity=0.313  Sum_probs=75.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEE-CCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCC------cccccceeeeccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKL-GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN------LIKIITVCSSIDF  119 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~-~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~n------Iv~l~~~~~~~~~  119 (628)
                      .++|++.+.||+|+||.||+|.+ ..+++.||+|+++... ...+.+.+|+.+++.++|++      ++++++++.    
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~----   87 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFE----   87 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEE----
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccc----
Confidence            46899999999999999999998 4578999999987543 34567889999999887665      888888854    


Q ss_pred             cccceeeeeecccccCCchhhhhccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                       ..+..++||||+ ++++.+++....
T Consensus        88 -~~~~~~lv~e~~-~~~l~~~l~~~~  111 (339)
T 1z57_A           88 -HHGHICIVFELL-GLSTYDFIKENG  111 (339)
T ss_dssp             -ETTEEEEEEECC-CCBHHHHHHHTT
T ss_pred             -cCCcEEEEEcCC-CCCHHHHHHhcC
Confidence             477899999999 889999886543

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=98.76  E-value=1.1e-08  Score=107.46  Aligned_cols=95  Identities=27%  Similarity=0.362  Sum_probs=74.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|++..+++.||||++.....  ...+.+|+++++.++|++.+..+..+.    ......+
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~----~~~~~~~   79 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFG----VEGDYNV   79 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEE----EETTEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEE----eeCCEEE
Confidence            4689999999999999999999999999999998865432  356889999999998755444443332    2367889


Q ss_pred             eeecccccCCchhhhhcccccc
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      +||||+ +++|.+++......+
T Consensus        80 lvme~~-g~sL~~ll~~~~~~l  100 (483)
T 3sv0_A           80 LVMDLL-GPSLEDLFNFCSRKL  100 (483)
T ss_dssp             EEEECC-CCBHHHHHHHTTTCC
T ss_pred             EEEECC-CCCHHHHHHhhcCCC
Confidence            999999 899999987544333

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=98.76  E-value=6e-09  Score=103.52  Aligned_cols=94  Identities=17%  Similarity=0.247  Sum_probs=77.9

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcC--CCCcccccceeeeccc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVR--HRNLIKIITVCSSIDF  119 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~--h~nIv~l~~~~~~~~~  119 (628)
                      ....++|++.+.||+|+||.||+|.+. +++.||+|++....  ....+.+.+|+.++++++  ||||+++++++.    
T Consensus        24 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~----   98 (313)
T 3cek_A           24 SVKGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI----   98 (313)
T ss_dssp             EETTEEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEE----
T ss_pred             eeccceEEEEEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEee----
Confidence            344567999999999999999999985 58999999997543  344577899999999997  599999999854    


Q ss_pred             cccceeeeeecccccCCchhhhhcc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                       .....++||| +.+++|.+++...
T Consensus        99 -~~~~~~lv~e-~~~~~L~~~l~~~  121 (313)
T 3cek_A           99 -TDQYIYMVME-CGNIDLNSWLKKK  121 (313)
T ss_dssp             -CSSEEEEEEC-CCSEEHHHHHHHC
T ss_pred             -cCCEEEEEEe-cCCCcHHHHHHhc
Confidence             3678999999 6678999998754

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=98.76  E-value=6.2e-09  Score=103.59  Aligned_cols=89  Identities=19%  Similarity=0.213  Sum_probs=63.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-chhhh-HHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-GAAKS-FVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~~-~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++..... ....+ +.++..+++.++||||+++++++.     ....
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-----~~~~   98 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFI-----TNTD   98 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEe-----cCCc
Confidence            4678999999999999999999999999999999976432 22223 344445678889999999999964     4678


Q ss_pred             eeeeecccccCCchhhh
Q 042887          125 KALIYEYMKCGSSEDWM  141 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l  141 (628)
                      .++||||+ ++.+....
T Consensus        99 ~~lv~e~~-~~~~~~l~  114 (318)
T 2dyl_A           99 VFIAMELM-GTCAEKLK  114 (318)
T ss_dssp             EEEEECCC-SEEHHHHH
T ss_pred             EEEEEecc-CCcHHHHH
Confidence            99999999 44444444

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=98.73  E-value=8.7e-09  Score=105.12  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=77.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-----------CCCcccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-----------HRNLIKIITVCS  115 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~nIv~l~~~~~  115 (628)
                      .++|++.+.||+|+||.||+|++..+++.||+|++.... ...+.+.+|+.+++++.           ||||+++++++.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~   96 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   96 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence            467999999999999999999999999999999987532 23466889999988886           899999999865


Q ss_pred             eccccccceeeeeecccccCCchhhhhcc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ... ......++||||+ ++++.+++...
T Consensus        97 ~~~-~~~~~~~lv~e~~-~~~L~~~~~~~  123 (373)
T 1q8y_A           97 HKG-PNGVHVVMVFEVL-GENLLALIKKY  123 (373)
T ss_dssp             EEE-TTEEEEEEEECCC-CEEHHHHHHHT
T ss_pred             ccC-CCCceEEEEEecC-CCCHHHHHHHh
Confidence            411 1234789999999 88999988753

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=98.72  E-value=1.2e-08  Score=106.33  Aligned_cols=87  Identities=23%  Similarity=0.222  Sum_probs=69.9

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      .|...+.||+|+||+||.+.. .+|+.||||++....   .+.+.+|+.+++++ +|||||++++++.     .....|+
T Consensus        16 ~~~~~~~LG~G~~g~V~~~~~-~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~-----~~~~~~l   86 (434)
T 2rio_A           16 LVVSEKILGYGSSGTVVFQGS-FQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSET-----TDRFLYI   86 (434)
T ss_dssp             CEEEEEEEEECSTTCEEEEEE-SSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEE-----CSSEEEE
T ss_pred             eeeccCeEeeCCCeEEEEEEE-ECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEe-----cCCeEEE
Confidence            355568899999999986644 579999999986532   34678999999887 7999999998853     4788999


Q ss_pred             eecccccCCchhhhhccc
Q 042887          128 IYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~  145 (628)
                      |||||. |+|.+++....
T Consensus        87 v~E~~~-gsL~~~l~~~~  103 (434)
T 2rio_A           87 ALELCN-LNLQDLVESKN  103 (434)
T ss_dssp             EECCCS-EEHHHHHHTC-
T ss_pred             EEecCC-CCHHHHHhccC
Confidence            999996 59999997654

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=98.71  E-value=8.5e-09  Score=105.89  Aligned_cols=86  Identities=27%  Similarity=0.374  Sum_probs=66.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecc-cccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~~~~~  125 (628)
                      ..+|++.+.||+|+||.||+|++..+++ ||+|++.....    ...+|+.+|+.++||||+++++++.... .......
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~  113 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL  113 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence            3569999999999999999999976655 88888754322    2247999999999999999999876522 1334458


Q ss_pred             eeeecccccCCc
Q 042887          126 ALIYEYMKCGSS  137 (628)
Q Consensus       126 ~lv~e~~~~g~L  137 (628)
                      ++||||++++.+
T Consensus       114 ~lv~e~~~~~l~  125 (394)
T 4e7w_A          114 NLVLEYVPETVY  125 (394)
T ss_dssp             EEEEECCSEEHH
T ss_pred             EEEeeccCccHH
Confidence            899999997543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.69  E-value=3.5e-08  Score=105.16  Aligned_cols=86  Identities=15%  Similarity=0.145  Sum_probs=60.0

Q ss_pred             CcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--------cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           51 SASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--------KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        51 ~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--------~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ...+.||+|+||.||+|.+  .++.+|+|......        ....+++.+|++++++++||||+++..++..     .
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~-----~  411 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY--LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVD-----L  411 (540)
T ss_dssp             ---------CCEEEEEEEC--SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEE-----T
T ss_pred             CCCCEEeeCCCEEEEEEEE--CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEe-----C
Confidence            4467899999999999965  67889999864321        1123568999999999999999955444332     4


Q ss_pred             ceeeeeecccccCCchhhhhc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~  143 (628)
                      ...|+|||||++|+|.+++.+
T Consensus       412 ~~~~lVmE~~~ggsL~~~l~~  432 (540)
T 3en9_A          412 DNKRIMMSYINGKLAKDVIED  432 (540)
T ss_dssp             TTTEEEEECCCSEEHHHHSTT
T ss_pred             CccEEEEECCCCCCHHHHHHH
Confidence            566999999999999999876

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=98.68  E-value=2.8e-08  Score=96.69  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------------------chhhhHHHHHHHHhhcCCCCc
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------------------GAAKSFVTECEALSNVRHRNL  107 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------------------~~~~~~~~E~~~l~~l~h~nI  107 (628)
                      ....|++.+.||+|+||.||+|.+ .+|+.||+|+++....                  .....+.+|+.+|++++  | 
T Consensus        88 ~~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-  163 (282)
T 1zar_A           88 SGKVDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-  163 (282)
T ss_dssp             TTSCSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-
T ss_pred             CCeEEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-
Confidence            345566779999999999999999 7899999999964321                  13456899999999998  4 


Q ss_pred             ccccceeeeccccccceeeeeecccccCCchh
Q 042887          108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSED  139 (628)
Q Consensus       108 v~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~  139 (628)
                      +++.+++.      ....|+||||++||+|.+
T Consensus       164 ~~v~~~~~------~~~~~lvmE~~~g~~L~~  189 (282)
T 1zar_A          164 LAVPKVYA------WEGNAVLMELIDAKELYR  189 (282)
T ss_dssp             SSSCCEEE------EETTEEEEECCCCEEGGG
T ss_pred             CCcCeEEe------ccceEEEEEecCCCcHHH
Confidence            66666532      355699999999999988

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=98.67  E-value=1.4e-08  Score=105.32  Aligned_cols=88  Identities=18%  Similarity=0.255  Sum_probs=70.9

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .+|+..+.||+|+||.||.... .+|+.||||++.....   ..+.+|+.+++++ +|||||++++++.     .....|
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~-~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~-----~~~~~~   94 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGM-FDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEK-----DRQFQY   94 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEE-SSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEE-----ETTEEE
T ss_pred             EEEecCCeeecCcCEEEEEEEE-eCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEe-----cCCEEE
Confidence            4688889999999999664333 4789999999865332   3467899999999 7999999998854     477889


Q ss_pred             eeecccccCCchhhhhccc
Q 042887          127 LIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~  145 (628)
                      +|||||. |+|.+++....
T Consensus        95 lv~E~~~-g~L~~~l~~~~  112 (432)
T 3p23_A           95 IAIELCA-ATLQEYVEQKD  112 (432)
T ss_dssp             EEEECCS-EEHHHHHHSSS
T ss_pred             EEEECCC-CCHHHHHHhcC
Confidence            9999997 58999987654

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=98.67  E-value=2e-08  Score=102.68  Aligned_cols=94  Identities=21%  Similarity=0.287  Sum_probs=75.5

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCC-----cccccceeeecc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRN-----LIKIITVCSSID  118 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~n-----Iv~l~~~~~~~~  118 (628)
                      ...++|++.+.||+|+||.||+|++..+++.||||+++... .....+.+|+.+++.+. |++     |+++++.+.   
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~---  126 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFM---  126 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEE---
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeec---
Confidence            34678999999999999999999999999999999997532 23456778888888885 554     777777754   


Q ss_pred             ccccceeeeeecccccCCchhhhhccc
Q 042887          119 FKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                        .....++||||+. |++.+++....
T Consensus       127 --~~~~~~lv~e~~~-~~L~~~l~~~~  150 (382)
T 2vx3_A          127 --FRNHLCLVFEMLS-YNLYDLLRNTN  150 (382)
T ss_dssp             --ETTEEEEEEECCC-CBHHHHHHHTT
T ss_pred             --cCCceEEEEecCC-CCHHHHHhhcC
Confidence              3678999999997 48998887543

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=98.63  E-value=2e-08  Score=101.57  Aligned_cols=91  Identities=13%  Similarity=0.252  Sum_probs=72.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCC-cEEEEEEeeccccchhhhHHHHHHHHhhcCCCC------cccccceeeeccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETG-TTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN------LIKIITVCSSIDF  119 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~-~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~n------Iv~l~~~~~~~~~  119 (628)
                      .++|++.+.||+|+||.||+|.+..++ +.||+|+++... ...+.+.+|+.+++.++|++      ++.+.+++     
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~-----   91 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWF-----   91 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEE-----
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeee-----
Confidence            478999999999999999999998777 689999997532 34467889999999998766      77777764     


Q ss_pred             cccceeeeeecccccCCchhhhhcc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      ......++||||+ ++++.+++...
T Consensus        92 ~~~~~~~lv~e~~-~~~l~~~l~~~  115 (355)
T 2eu9_A           92 NFHGHMCIAFELL-GKNTFEFLKEN  115 (355)
T ss_dssp             EETTEEEEEEECC-CCBHHHHHHHT
T ss_pred             eeCCeEEEEEecc-CCChHHHHHhc
Confidence            3467899999999 56666666543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.60  E-value=1.2e-08  Score=97.09  Aligned_cols=102  Identities=22%  Similarity=0.199  Sum_probs=63.0

Q ss_pred             CcccE--EEccCCccc---cccchhhhCCCCCCEEecccCcCccc--ccccccCCCCCCEeecccccCcccCCcCccCCC
Q 042887          162 LKLEM--IDVGDNQLI---GKFPDFIANFSALEAIDISANMLGGR--IPDSLCQLRSLNYLSISENNFSCKLPLSIWNIS  234 (628)
Q Consensus       162 ~~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~  234 (628)
                      +.|..  ++++.|+..   ...+-...++++|+.|+|++|+|+++  +|..+..+++|++|+|++|.|++.  ..+..+.
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~  218 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK  218 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence            34554  666777433   22222234677888888888888763  346667788888888888888753  2233333


Q ss_pred             --CCCEEEeecccCcccCCh------hhhhCCCCCcEEe
Q 042887          235 --SLEIISLHSNRFEGSLPL------NIGFNIPNVNFLS  265 (628)
Q Consensus       235 --~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~  265 (628)
                        +|++|+|++|.+.+.+|.      .+...+|+|+.||
T Consensus       219 ~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          219 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence              778888888877765552      1233455655554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=1.6e-08  Score=91.58  Aligned_cols=87  Identities=21%  Similarity=0.286  Sum_probs=43.1

Q ss_pred             cCCCCEeeCcCCcCcccC----CccccCCCCCCeEECcCceeeee----cCccccCCCCCCEEEC--CCCcccccC----
Q 042887          485 LRNLAEFDLSENHFSNEI----PVTLSACTTLEYLHLQGNSFSGS----LPLSLKTLKSIKELDL--SRNNLSGQI----  550 (628)
Q Consensus       485 l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~~----  550 (628)
                      .++|++|+|++|.+.+..    ...+...++|++|+|++|.|...    +...+...++|++|+|  ++|.|....    
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            344555555555554321    22233334555555555555432    2334445556666666  556665332    


Q ss_pred             chhhhcccCCCeEeccCCcCc
Q 042887          551 PKYLENLLFLAYLNLSYNHFE  571 (628)
Q Consensus       551 ~~~~~~l~~L~~L~ls~N~l~  571 (628)
                      .+.+...++|++|++++|.+.
T Consensus       144 ~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          144 ANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCcCEEeccCCCCC
Confidence            233344456666666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.59  E-value=2.1e-08  Score=95.38  Aligned_cols=96  Identities=23%  Similarity=0.336  Sum_probs=59.2

Q ss_pred             EEcCCCcCc---cccchhhhccCCCCEeeCcCCcCcc--cCCccccCCCCCCeEECcCceeeeecCccccCCC--CCCEE
Q 042887          467 LDLSGNLLG---GSIPLEVGNLRNLAEFDLSENHFSN--EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLK--SIKEL  539 (628)
Q Consensus       467 L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L  539 (628)
                      ++++.|+..   +..+....++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            456666433   1112222457778888888888776  3345566777777888887777743  2233333  77777


Q ss_pred             ECCCCcccccCc-------hhhhcccCCCeEe
Q 042887          540 DLSRNNLSGQIP-------KYLENLLFLAYLN  564 (628)
Q Consensus       540 ~Ls~N~l~~~~~-------~~~~~l~~L~~L~  564 (628)
                      +|++|++.+..|       ..+..+++|+.||
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            777777775444       2356677777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=1.5e-08  Score=91.91  Aligned_cols=46  Identities=13%  Similarity=0.093  Sum_probs=25.8

Q ss_pred             cchhhhCCCCCCEEecccC-cCccc----ccccccCCCCCCEeecccccCc
Q 042887          178 FPDFIANFSALEAIDISAN-MLGGR----IPDSLCQLRSLNYLSISENNFS  223 (628)
Q Consensus       178 ~~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~i~  223 (628)
                      +...+...+.|++|+|++| .+...    +...+...++|++|+|++|.|.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            3445556666777777766 66532    2233444555666666666554

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.31  E-value=2.4e-07  Score=99.41  Aligned_cols=87  Identities=10%  Similarity=-0.030  Sum_probs=63.7

Q ss_pred             ceeecCCceeEEEEEECCCCcEEEEEEeeccc----------cchhhhHHHHHHHHhhc-CCCCcccccceeeecccccc
Q 042887           54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ----------KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~----------~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ...+.|+.|.+..++....|+.||+|++....          ....+.|.+|+++|+++ .|+||++++++     +++.
T Consensus       240 ~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~-----~ed~  314 (569)
T 4azs_A          240 NQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAH-----GENA  314 (569)
T ss_dssp             CC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEE-----EECS
T ss_pred             hccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEE-----EEEC
Confidence            34667777777766666678999999996531          12345699999999999 69999999999     5668


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ...|||||||+||+|.+++.+.+
T Consensus       315 ~~~yLVMEyv~G~~L~d~i~~~~  337 (569)
T 4azs_A          315 QSGWLVMEKLPGRLLSDMLAAGE  337 (569)
T ss_dssp             SEEEEEEECCCSEEHHHHHHTTC
T ss_pred             CEEEEEEecCCCCcHHHHHHhCC
Confidence            99999999999999999997654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.16  E-value=1.1e-06  Score=84.31  Aligned_cols=75  Identities=16%  Similarity=0.156  Sum_probs=55.9

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcE--EEEEEeeccccc------------------------hhhhHHHHHHHHhhcC
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTT--VAVKVMNLKQKG------------------------AAKSFVTECEALSNVR  103 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~--~avK~~~~~~~~------------------------~~~~~~~E~~~l~~l~  103 (628)
                      |++.+.||+|+||.||+|.+..+|+.  ||||+++.....                        ....+.+|+.+|..+.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999998778888  999987543110                        1125789999999998


Q ss_pred             CCCcc--cccceeeeccccccceeeeeecccc
Q 042887          104 HRNLI--KIITVCSSIDFKGVDFKALIYEYMK  133 (628)
Q Consensus       104 h~nIv--~l~~~~~~~~~~~~~~~~lv~e~~~  133 (628)
                      |+++.  ..++         ....++||||+.
T Consensus       129 ~~~i~~p~~~~---------~~~~~lVmE~~g  151 (258)
T 1zth_A          129 EAGVSVPQPYT---------YMKNVLLMEFIG  151 (258)
T ss_dssp             HTTCCCCCEEE---------EETTEEEEECCE
T ss_pred             hCCCCCCeEEE---------cCCCEEEEEecC
Confidence            88652  2222         235689999994

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.14  E-value=4.9e-07  Score=79.55  Aligned_cols=81  Identities=14%  Similarity=0.122  Sum_probs=41.1

Q ss_pred             ceEEcCCCcCccccchhhhccCCCCEeeCcCCc-CcccCCccccCC----CCCCeEECcCce-eeeecCccccCCCCCCE
Q 042887          465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENH-FSNEIPVTLSAC----TTLEYLHLQGNS-FSGSLPLSLKTLKSIKE  538 (628)
Q Consensus       465 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  538 (628)
                      +.||++++.++...-..+.++++|++|+|++|. +++..-..+..+    ++|++|+|++|. |++..-..+..+++|++
T Consensus        64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~  143 (176)
T 3e4g_A           64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY  143 (176)
T ss_dssp             EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred             eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence            556666666554444445555666666666653 444333333332    245555555553 44333333445555555


Q ss_pred             EECCCCc
Q 042887          539 LDLSRNN  545 (628)
Q Consensus       539 L~Ls~N~  545 (628)
                      |++++|.
T Consensus       144 L~L~~c~  150 (176)
T 3e4g_A          144 LFLSDLP  150 (176)
T ss_dssp             EEEESCT
T ss_pred             EECCCCC
Confidence            5555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=9.3e-07  Score=77.79  Aligned_cols=83  Identities=18%  Similarity=0.216  Sum_probs=63.6

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCc-CcccccccccCC----CCCCEeeccccc-CcccCCcCccCCCCC
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANM-LGGRIPDSLCQL----RSLNYLSISENN-FSCKLPLSIWNISSL  236 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-i~~~~p~~~~~l~~L  236 (628)
                      +|+.||++++.|+..--..+.++++|+.|+|++|. ++..--..++.+    ++|++|+|++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            58899999988887766778888899999999885 665544556665    368888888874 776555567778888


Q ss_pred             CEEEeeccc
Q 042887          237 EIISLHSNR  245 (628)
Q Consensus       237 ~~L~L~~n~  245 (628)
                      ++|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888888875

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.97  E-value=5.8e-06  Score=85.20  Aligned_cols=57  Identities=21%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCC
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRH  104 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h  104 (628)
                      ..|...+.||+|+||.||+|++..+|+.||||++....   ....+.+.+|+.+++.+.|
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~  137 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG  137 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence            34777889999999999999999999999999987432   2335779999999999987

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=97.92  E-value=5.2e-06  Score=83.07  Aligned_cols=92  Identities=9%  Similarity=0.040  Sum_probs=54.4

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--------------chhhhHHHHHHHHhhcCCCCcccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--------------GAAKSFVTECEALSNVRHRNLIKIITV  113 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------------~~~~~~~~E~~~l~~l~h~nIv~l~~~  113 (628)
                      .-|++.+.||+|+||.||+|... +|+.||||+++....              ........++++.....|+|+++++..
T Consensus        95 ~iY~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~  173 (397)
T 4gyi_A           95 DVYSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEE  173 (397)
T ss_dssp             SCSEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            34899999999999999999984 699999998754210              001112222333333334444444332


Q ss_pred             eeec-cccccceeeeeecccccCCchhh
Q 042887          114 CSSI-DFKGVDFKALIYEYMKCGSSEDW  140 (628)
Q Consensus       114 ~~~~-~~~~~~~~~lv~e~~~~g~L~~~  140 (628)
                      .... ..-.....++||||++|+.+.+.
T Consensus       174 gv~vp~p~~~~~~~LVME~i~G~~L~~l  201 (397)
T 4gyi_A          174 GFPVPEPIAQSRHTIVMSLVDALPMRQV  201 (397)
T ss_dssp             TCSCCCEEEEETTEEEEECCSCEEGGGC
T ss_pred             CCCCCeeeeccCceEEEEecCCccHhhh
Confidence            1110 00012345799999998877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.54  E-value=5e-05  Score=68.08  Aligned_cols=67  Identities=12%  Similarity=0.100  Sum_probs=30.0

Q ss_pred             cccCCCCCCEEEcccccceeeccccc----ccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeeccc
Q 042887          278 SFSNASNLQVLDVYKNHFSGQVKIDF----NRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNT  346 (628)
Q Consensus       278 ~~~~l~~L~~L~L~~N~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  346 (628)
                      .+..-+.|+.|+|++|+|.......+    ..-+.|++|+|++|.|+.....  .....+...+.|+.|+|++
T Consensus        65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~--ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA--RLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH--HHHHHTTTTCCCSEEECCC
T ss_pred             HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH--HHHHHHhhCCceeEEECCC
Confidence            34444555555555555543332222    2334555555555555432111  1223344444455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.53  E-value=6.1e-05  Score=67.54  Aligned_cols=83  Identities=12%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             CcccEEEccCC-ccccc----cchhhhCCCCCCEEecccCcCccccccc----ccCCCCCCEeecccccCcccCC----c
Q 042887          162 LKLEMIDVGDN-QLIGK----FPDFIANFSALEAIDISANMLGGRIPDS----LCQLRSLNYLSISENNFSCKLP----L  228 (628)
Q Consensus       162 ~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~i~~~~p----~  228 (628)
                      +.|+.|+|++| .|...    +.+.+..-+.|+.|+|++|.|...-..+    +..-+.|++|+|++|.|.+...    +
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            45777888775 66432    3345556667777777777776433222    3345667777777776664322    2


Q ss_pred             CccCCCCCCEEEeecc
Q 042887          229 SIWNISSLEIISLHSN  244 (628)
Q Consensus       229 ~~~~l~~L~~L~L~~n  244 (628)
                      ++..-+.|++|+|++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            3334445666666543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.17  E-value=0.00072  Score=64.56  Aligned_cols=91  Identities=12%  Similarity=0.048  Sum_probs=70.6

Q ss_pred             HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecccccc
Q 042887           44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~  122 (628)
                      .....+|.+....|.|+.+.||++..  .++.+++|+...........+.+|+.+++.+. +..+.++++.+.     ..
T Consensus        10 ~~~l~~~~~~~~~~g~s~~~v~~~~~--~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~-----~~   82 (263)
T 3tm0_A           10 KKLIEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER-----HD   82 (263)
T ss_dssp             HHHHTTSEEEECCSCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEE-----ET
T ss_pred             HHHhccceeEeeccCCCCCeEEEEEC--CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEe-----cC
Confidence            34457898888899999999999976  46889999987543233457899999999885 667778887754     35


Q ss_pred             ceeeeeecccccCCchhhh
Q 042887          123 DFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l  141 (628)
                      +..|+||||++|.++.+.+
T Consensus        83 ~~~~lv~e~i~G~~l~~~~  101 (263)
T 3tm0_A           83 GWSNLLMSEADGVLCSEEY  101 (263)
T ss_dssp             TEEEEEEECCSSEEHHHHC
T ss_pred             CceEEEEEecCCeehhhcc
Confidence            7789999999999887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.14  E-value=0.0006  Score=57.02  Aligned_cols=56  Identities=20%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             EeeCcCCcCc-ccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887          490 EFDLSENHFS-NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       490 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  547 (628)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666664 23343322  34666666666666544555566666666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.95  E-value=0.0012  Score=55.14  Aligned_cols=57  Identities=26%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             eEECcCceee-eecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcc
Q 042887          514 YLHLQGNSFS-GSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG  572 (628)
Q Consensus       514 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  572 (628)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+...++.|..+++|+.|+|++|++..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            4555555554 12333221  345666666666665555555666666666666665543

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=95.38  E-value=0.015  Score=55.05  Aligned_cols=82  Identities=12%  Similarity=-0.005  Sum_probs=57.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCC--cccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN--LIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~n--Iv~l~~~~~~~~~~~~~~~  125 (628)
                      .+|.+....+.|..+.||++.. .+|+.+++|.....   ....+.+|+.+++.+.+..  +.+++....     ..+..
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~-----~~~~~   90 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVT-----EAGRD   90 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEE-----CSSCE
T ss_pred             CCCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEecc-----CCCCC
Confidence            4455543334566799999975 46778999987543   2356889999999886444  445666532     34568


Q ss_pred             eeeecccccCCch
Q 042887          126 ALIYEYMKCGSSE  138 (628)
Q Consensus       126 ~lv~e~~~~g~L~  138 (628)
                      ++||||++|.++.
T Consensus        91 ~~v~e~i~G~~l~  103 (264)
T 1nd4_A           91 WLLLGEVPGQDLL  103 (264)
T ss_dssp             EEEEECCSSEETT
T ss_pred             EEEEEecCCcccC
Confidence            9999999998874

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=93.13  E-value=0.1  Score=51.93  Aligned_cols=84  Identities=13%  Similarity=0.147  Sum_probs=56.4

Q ss_pred             cCceeecCCceeEEEEEECCCCcEEEEEEee--ccc-cchhhhHHHHHHHHhhcC--CCCcccccceeeeccccccceee
Q 042887           52 ASNMIGQGSFGFVYKGKLGETGTTVAVKVMN--LKQ-KGAAKSFVTECEALSNVR--HRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        52 ~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~--~~~-~~~~~~~~~E~~~l~~l~--h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..+.++.|.++.||+...  .+..+++|+..  ... ......+.+|..+++.+.  +..+.+++..+.+.  ...+..|
T Consensus        42 ~~~~l~~G~sn~~y~v~~--~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~--~~~g~~~  117 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVT--PGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDE--SVIGRAF  117 (359)
T ss_dssp             EEEECCC-CCSCEEEEEC--SSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCT--TTTSSCE
T ss_pred             eEEEcCCcccceEEEEEE--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCC--CccCCeE
Confidence            356799999999999887  34678888775  332 123457889999999987  45577777775431  1125578


Q ss_pred             eeecccccCCchh
Q 042887          127 LIYEYMKCGSSED  139 (628)
Q Consensus       127 lv~e~~~~g~L~~  139 (628)
                      +||||++|..+.+
T Consensus       118 ~vme~v~G~~l~~  130 (359)
T 3dxp_A          118 YIMEFVSGRVLWD  130 (359)
T ss_dssp             EEEECCCCBCCCC
T ss_pred             EEEEecCCeecCC
Confidence            9999999987743

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=92.12  E-value=0.15  Score=51.57  Aligned_cols=77  Identities=14%  Similarity=0.144  Sum_probs=49.2

Q ss_pred             CceeecCCceeEEEEEECCCCcEEEEEEeecccc-------chhhhHHHHHHHHhhcCC--CC-cccccceeeecccccc
Q 042887           53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-------GAAKSFVTECEALSNVRH--RN-LIKIITVCSSIDFKGV  122 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~n-Iv~l~~~~~~~~~~~~  122 (628)
                      .+.+|.|.++.||++....+++.+++|.......       ....++.+|.++++.+..  +. +.+++..       +.
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~-------d~  107 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS-------DT  107 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE-------ET
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE-------cC
Confidence            4579999999999997655678899998653211       134567889998887742  33 3344432       13


Q ss_pred             ceeeeeecccccCC
Q 042887          123 DFKALIYEYMKCGS  136 (628)
Q Consensus       123 ~~~~lv~e~~~~g~  136 (628)
                      ...++|||++++..
T Consensus       108 ~~~~lvmE~l~g~~  121 (397)
T 2olc_A          108 EMAVTVMEDLSHLK  121 (397)
T ss_dssp             TTTEEEECCCTTSE
T ss_pred             CccEEEEEeCCCcc
Confidence            34589999997643

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=91.37  E-value=0.4  Score=45.87  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=55.4

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCC---Ccccccceeeecccccccee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHR---NLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~---nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ...-.+.+|.|..+.||+.+. .+|+.|.+|+...........|.+|+..|+.+...   -+.+++..         +..
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l-~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~---------~~~   85 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVEL-ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW---------DDR   85 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEE-TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE---------ETT
T ss_pred             CeEEEEecCCCCCeEEEEEEE-CCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec---------cCc
Confidence            445567899999999999987 57899999987654443445688999998888422   23333333         234


Q ss_pred             eeeecccccCCc
Q 042887          126 ALIYEYMKCGSS  137 (628)
Q Consensus       126 ~lv~e~~~~g~L  137 (628)
                      ++||||.+++..
T Consensus        86 ~lv~e~l~~~~~   97 (288)
T 3f7w_A           86 TLAMEWVDERPP   97 (288)
T ss_dssp             EEEEECCCCCCC
T ss_pred             eEEEEeecccCC
Confidence            789999887654

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=90.70  E-value=0.029  Score=57.97  Aligned_cols=62  Identities=11%  Similarity=0.042  Sum_probs=18.1

Q ss_pred             CcCceeecCCceeEEEEEECCCCcEEEE------EEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceee
Q 042887           51 SASNMIGQGSFGFVYKGKLGETGTTVAV------KVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCS  115 (628)
Q Consensus        51 ~~~~~iG~G~~g~V~~~~~~~~~~~~av------K~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~  115 (628)
                      .+.+.+|   ||+||+|.+......||+      |.....  .......|.+|..+++..+|||+++.+.+..
T Consensus       145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred             cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence            3456676   999999999655567888      655432  2233457889999999999999999988743

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=88.73  E-value=0.93  Score=43.86  Aligned_cols=75  Identities=16%  Similarity=0.132  Sum_probs=56.2

Q ss_pred             CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC---CCCcccccceeeeccccccceeeeee
Q 042887           53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR---HRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      .+.++.|....+|+...  +++.+.+|+....   ....+.+|.+.|+.+.   ..-+.+++..+..     .+..++||
T Consensus        41 ~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-----~g~~~lvm  110 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLIND--EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNS-----QGHSFLLL  110 (312)
T ss_dssp             EEEECCSSSSEEEEEES--SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-----SSEEEEEE
T ss_pred             eEEeCCccceeeeEEEE--CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-----CCceEEEE
Confidence            46789999999999876  4677888987543   2466889998888874   2456677666432     46789999


Q ss_pred             cccccCCc
Q 042887          130 EYMKCGSS  137 (628)
Q Consensus       130 e~~~~g~L  137 (628)
                      |++++...
T Consensus       111 e~l~G~~~  118 (312)
T 3jr1_A          111 EALNKSKN  118 (312)
T ss_dssp             ECCCCCCC
T ss_pred             EeccCCCC
Confidence            99998865

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=84.90  E-value=2  Score=40.27  Aligned_cols=86  Identities=13%  Similarity=0.014  Sum_probs=58.7

Q ss_pred             CCCCcCceeecCCce-eEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFG-FVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g-~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .+|+. +.+..|.-| .||+.....++..+.+|+....   ....+.+|...|+.+. +--|.+++..+.+     .+..
T Consensus        25 ~g~~~-~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~-----~~~~   95 (272)
T 4gkh_A           25 YGYRW-ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRT-----PDDA   95 (272)
T ss_dssp             TTCEE-EEEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEE-----TTEE
T ss_pred             cCCeE-EEccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEE-----CCeE
Confidence            44543 345556554 6898887667778999986543   3456788999888875 3234566666443     5678


Q ss_pred             eeeecccccCCchhhhh
Q 042887          126 ALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~  142 (628)
                      ++|||+++|.++.+...
T Consensus        96 ~lvme~l~G~~~~~~~~  112 (272)
T 4gkh_A           96 WLLTTAIPGKTAFQVLE  112 (272)
T ss_dssp             EEEEECCCSEEHHHHHH
T ss_pred             EEEEEeeCCcccccccc
Confidence            99999999988766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	628
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-17
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-17
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-17
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-17
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-17
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-08
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	7e-17
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	8e-17
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-16
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-16
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-16
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-16
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-16
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-16
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	6e-16
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-16
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-15
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-15
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-15
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-15
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-15
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-15
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-15
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-15
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-15
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-15
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	5e-15
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	9e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-14
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-14
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-14
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-14
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-14
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	6e-14
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-14
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	9e-14
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-13
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-13
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-13
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-13
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-13
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	6e-13
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	9e-13
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-12
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-12
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-12
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	5e-12
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	9e-12
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-11
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-11
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-11
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-11
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-11
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	4e-11
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	9e-11
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-10
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	7e-10
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	7e-10
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	9e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-09
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	4e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.8 bits (224), Expect = 3e-20
 Identities = 80/397 (20%), Positives = 133/397 (33%), Gaps = 35/397 (8%)

Query: 178 FPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE 237
           F D     +      +    +   +  +   L  +  L          +   +  +++L 
Sbjct: 16  FTD--TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLT 69

Query: 238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS------NASNLQVLDVY 291
            I+  +N+     PL    N+  +  + +  N      P +           N Q+ D+ 
Sbjct: 70  QINFSNNQLTDITPLK---NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 292 KNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGG 351
                  +       + +S +         +  S  + +T L   + +  L         
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186

Query: 352 VFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKN 411
           V   S+      +  +   +NQIS   P  I    N++   +  NQL       +  L N
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTN 242

Query: 412 LQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSG 471
           L  L L  N +    P  L  LT L  L LG N +    P        L  L+ L +L  
Sbjct: 243 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--------LAGLTALTNLEL 292

Query: 472 NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLK 531
           N         + NL+NL    L  N+ S+  P  +S+ T L+ L    N  S     SL 
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 532 TLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568
            L +I  L    N +S   P  L NL  +  L L+  
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 5e-10
 Identities = 59/347 (17%), Positives = 111/347 (31%), Gaps = 29/347 (8%)

Query: 232 NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVY 291
            ++      L       ++      ++  V  L   +     S+       +NL  ++  
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFS 74

Query: 292 KNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGG 351
            N  +         L+ L  + ++ N +   +                ++  ++  K   
Sbjct: 75  NNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 352 VFLR------SIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHA 405
              R      +I+++SA   +  +        +              ++ +    +    
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 406 IGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSR 465
           + +L NL+ L    N +    P     LT L+ L L  N L+     +L +  NL  L  
Sbjct: 193 LAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDL-- 246

Query: 466 LLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGS 525
             DL+ N +    PL    L  L E  L  N  SN  P+      T   L+         
Sbjct: 247 --DLANNQISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--- 299

Query: 526 LPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572
               +  LK++  L L  NN+S   P  + +L  L  L  + N    
Sbjct: 300 -ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 9e-07
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISE 219
           NL  L  + +  N +    P  +++ + L+ +  + N +      SL  L ++N+LS   
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 220 NNFSCKLPLSIWNISSLEIISLHSN 244
           N  S   PL+  N++ +  + L+  
Sbjct: 361 NQISDLTPLA--NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 13/122 (10%), Positives = 44/122 (36%), Gaps = 8/122 (6%)

Query: 99  LSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQR 158
           L   +  N+  +  + +  + +  + +      +    +  ++    + +      +   
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS----DISPV 325

Query: 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSIS 218
            +L KL+ +   +N++       +AN + +  +    N +    P  L  L  +  L ++
Sbjct: 326 SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381

Query: 219 EN 220
           + 
Sbjct: 382 DQ 383

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.3 bits (213), Expect = 3e-19
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 18/118 (15%)

Query: 39  SYADLSKATNNFSAS---------NMIGQGSFGFVYKGKL---GETGTTVAVKVMNLKQ- 85
           ++ D ++A   F+            +IG G FG V  G L   G+    VA+K +     
Sbjct: 8   TFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT 67

Query: 86  KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
           +   + F++E   +    H N+I +  V +           +I E+M+ GS + ++ Q
Sbjct: 68  EKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS-----TPVMIITEFMENGSLDSFLRQ 120

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.5 bits (205), Expect = 3e-18
 Identities = 62/316 (19%), Positives = 107/316 (33%), Gaps = 30/316 (9%)

Query: 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH 294
            L ++       E  +P ++    P+   L +  N  T      F N  NL  L +  N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 295 FSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFL 354
            S      F  L  L RL+LSKN L                   ++ L ++ N+   V  
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEK---------MPKTLQELRVHENEITKVRK 117

Query: 355 RSIANLSAKITVIGMGD-NQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQ 413
                L+  I V    +  + SG      + +  ++   +    +T TIP  +    +L 
Sbjct: 118 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLT 174

Query: 414 GLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL 473
            L L  N +      +L  L  L +L L FN++      SL N  +L  L        N 
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH-----LNNN 229

Query: 474 LGGSIPLEVGNLRNLAEFDLSENHFSN------EIPVTLSACTTLEYLHLQGN--SFSGS 525
               +P  + + + +    L  N+ S         P   +   +   + L  N   +   
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

Query: 526 LPLSLKTLKSIKELDL 541
            P + + +     + L
Sbjct: 290 QPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 2e-16
 Identities = 51/266 (19%), Positives = 101/266 (37%), Gaps = 9/266 (3%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           L  +  +L     ++ + +N+I+     + KNL N++   +  N+++   P A   L  L
Sbjct: 22  LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472
           + L L +N L+         L  L         ++ +V + L     +   +  L  SG 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKT 532
                       ++ L+   +++ + +    +      +L  LHL GN  +     SLK 
Sbjct: 142 -----ENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKG 193

Query: 533 LKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNE 592
           L ++ +L LS N++S      L N   L  L+L+ N                 ++L  N 
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

Query: 593 RLCGGLEELHLPSCHFGRPRITRITL 618
               G  +   P  +  +   + ++L
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVSL 279

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.5 bits (166), Expect = 3e-13
 Identities = 52/271 (19%), Positives = 90/271 (33%), Gaps = 22/271 (8%)

Query: 307 SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITV 366
            + + L L  N +      D   L  L        L L  NK   +   + A L  K+  
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHT------LILINNKISKISPGAFAPLV-KLER 83

Query: 367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTI 426
           + +  NQ+        K L  +     E  ++  ++ + + ++  ++ L        G  
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIE 142

Query: 427 PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLR 486
                 +  L+ + +   N+         +   L        L GN +       +  L 
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL-------HLDGNKITKVDAASLKGLN 195

Query: 487 NLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546
           NLA+  LS N  S     +L+    L  LHL  N      P  L   K I+ + L  NN+
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNI 254

Query: 547 SG------QIPKYLENLLFLAYLNLSYNHFE 571
           S         P Y       + ++L  N  +
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 5/153 (3%)

Query: 196 NMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIG 255
               G    +   ++ L+Y+ I++ N +    +      SL  + L  N+       ++ 
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASL- 191

Query: 256 FNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLS 315
             + N+  L +  N+ +     S +N  +L+ L +  N          +    +  ++L 
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD-HKYIQVVYLH 250

Query: 316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNK 348
            NN+    ++D       T  +    + L +N 
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 1e-17
 Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 43  LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSN 101
           +    ++F   + +G G+ G V+K     +G  +A K+++L+ +       + E + L  
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 102 VRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
                ++       S         ++  E+M  GS +  + ++ 
Sbjct: 61  CNSPYIVGFYGAFYS-----DGEISICMEHMDGGSLDQVLKKAG 99

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.5 bits (198), Expect = 2e-17
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 31  MEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK 90
           M+   P  +Y        + +  + +G G +G VY+G   +   TVAVK +  +     +
Sbjct: 2   MDPSSP--NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVE 58

Query: 91  SFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
            F+ E   +  ++H NL++++ VC+           +I E+M  G+  D++ + N +
Sbjct: 59  EFLKEAAVMKEIKHPNLVQLLGVCTR-----EPPFYIITEFMTYGNLLDYLRECNRQ 110

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 3e-17
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
                   +G G FG V+ G      T VAVK +  +   +  +F+ E   +  ++H+ L
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYY-NGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRL 70

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
           +++  V +       +   +I EYM+ GS  D++   +  
Sbjct: 71  VRLYAVVTQ------EPIYIITEYMENGSLVDFLKTPSGI 104

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 3e-17
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 11/104 (10%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHR 105
              +    IG GSFG VYKGK       VAVK++N+        ++F  E   L   RH 
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHV 64

Query: 106 NLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
           N++  +   ++         A++ ++ +  S    +H    K E
Sbjct: 65  NILLFMGYSTA------PQLAIVTQWCEGSSLYHHLHIIETKFE 102

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 4e-17
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
                   IG+G FG V  G     G  VAVK   +K    A++F+ E   ++ +RH NL
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY--RGNKVAVKC--IKNDATAQAFLAEASVMTQLRHSNL 62

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
           ++++ V      +      ++ EYM  GS  D++      
Sbjct: 63  VQLLGVI----VEEKGGLYIVTEYMAKGSLVDYLRSRGRS 98

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 5e-17
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
            + +    +G G FG V  GK       VA+K++  +   +   F+ E + + N+ H  L
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKW-RGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKL 61

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
           +++  VC+           +I EYM  G   +++ +   + +
Sbjct: 62  VQLYGVCTKQ-----RPIFIITEYMANGCLLNYLREMRHRFQ 98

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 6e-17
 Identities = 49/266 (18%), Positives = 85/266 (31%), Gaps = 14/266 (5%)

Query: 307 SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITV 366
           +   R+FL  N +     +       LT       +    +      L  +        +
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL------EQL 85

Query: 367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTI 426
               + Q+    P+    L  ++   ++   L    P     L  LQ L L  N+L+   
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 427 PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLR 486
            DT  +L  L  LFL  N +      +     +L      L L  N +    P    +L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL----DRLLLHQNRVAHVHPHAFRDLG 201

Query: 487 NLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546
            L    L  N+ S      L+    L+YL L  N +             +++   S + +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEV 260

Query: 547 SGQIPKYLENLLFLAYLNLSYNHFEG 572
              +P+ L          L+ N  +G
Sbjct: 261 PCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 4e-12
 Identities = 57/251 (22%), Positives = 89/251 (35%), Gaps = 6/251 (2%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412
           L+++   + A    I +  N+IS    +  +   N+    +  N L      A   L  L
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 413 QGLALVRNSLRGTI-PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSG 471
           + L L  N+   ++ P T   L  L+ L L    LQ   P        L  L     L  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL----YLQD 138

Query: 472 NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLK 531
           N L         +L NL    L  N  S+          +L+ L L  N  +   P + +
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 532 TLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGN 591
            L  +  L L  NNLS    + L  L  L YL L+ N +  +   + ++          +
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258

Query: 592 ERLCGGLEELH 602
           E  C   + L 
Sbjct: 259 EVPCSLPQRLA 269

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 11/221 (4%)

Query: 131 YMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEA 190
               G +       +D  +  ++       L +L  + +    L    P      +AL+ 
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 191 IDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSL 250
           + +  N L     D+   L +L +L +  N  S     +   + SL+ + LH NR     
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 251 PLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLS 310
           P     ++  +  L +  NN +     + +    LQ L +  N +    +      + L 
Sbjct: 194 PHAF-RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQ 251

Query: 311 RLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGG 351
           +   S + +       L         +  ++  L  N   G
Sbjct: 252 KFRGSSSEVPCSLPQRL---------AGRDLKRLAANDLQG 283

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 7e-17
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 31  MEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAK 90
           +E+   +VS  D  K    ++    IGQG+ G VY      TG  VA++ MNL+Q+   +
Sbjct: 6   LEKLRSIVSVGDPKK---KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKE 62

Query: 91  SFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
             + E   +   ++ N++  +           D   ++ EY+  GS  D + +
Sbjct: 63  LIINEILVMRENKNPNIVNYLDSYLV-----GDELWVVMEYLAGGSLTDVVTE 110

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 8e-17
 Identities = 19/107 (17%), Positives = 49/107 (45%), Gaps = 10/107 (9%)

Query: 46  ATNNFSASNM-IGQGSFGFVYKG--KLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSN 101
             +N   +++ +G G+FG V +G  ++ +    VA+KV+    +K   +  + E + +  
Sbjct: 6   KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQ 65

Query: 102 VRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
           + +  ++++I VC +          L+ E    G    ++    +++
Sbjct: 66  LDNPYIVRLIGVCQAEAL------MLVMEMAGGGPLHKFLVGKREEI 106

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 2e-16
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITV 113
           IG+GSF  VYKG   ET   VA   +  ++  K   + F  E E L  ++H N+++    
Sbjct: 17  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDS 76

Query: 114 CSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
             S   KG     L+ E M  G+ + ++ +  
Sbjct: 77  WES-TVKGKKCIVLVTELMTSGTLKTYLKRFK 107

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 77.5 bits (190), Expect = 3e-16
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALS 100
           S  ++ +    ++G G    V+  +       VAVKV+     +       F  E +  +
Sbjct: 3   SHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAA 62

Query: 101 NVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
            + H  ++ +     +    G     ++ EY+   +  D +H   
Sbjct: 63  ALNHPAIVAVYDTGEAETPAG-PLPYIVMEYVDGVTLRDIVHTEG 106

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 78.2 bits (192), Expect = 3e-16
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
           +++     +G G+FG V++     TG   A K +    +   ++   E + +S +RH  L
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
           + +            +   +IYE+M  G   + +   ++K+
Sbjct: 86  VNLHDAFEDD-----NEMVMIYEFMSGGELFEKVADEHNKM 121

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 3e-16
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
           +  +    IG G FG V+ G        VA+K +  +   + + F+ E E +  + H  L
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKL 62

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
           +++  VC            L++E+M+ G   D++  
Sbjct: 63  VQLYGVCLE-----QAPICLVFEFMEHGCLSDYLRT 93

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 3e-16
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G G+FG VYK +  ET    A KV++ K +   + ++ E + L++  H N++K++    
Sbjct: 20  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 79

Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
                  +   ++ E+   G+ +  M +    L
Sbjct: 80  Y-----ENNLWILIEFCAGGAVDAVMLELERPL 107

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (191), Expect = 4e-16
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 49  NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLI 108
           +++ + +IG GSFG VY+ KL ++G  VA+K +   +    +    E + +  + H N++
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIV 76

Query: 109 KIITVC-SSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
           ++     SS + K   +  L+ +Y+         H S  K
Sbjct: 77  RLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAK 116

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 77.4 bits (190), Expect = 6e-16
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G G+FG V++     TG     K +N        +   E   ++ + H  LI +     
Sbjct: 37  LGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFE 96

Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
                      LI E++  G   D +   + K+
Sbjct: 97  D-----KYEMVLILEFLSGGELFDRIAAEDYKM 124

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 6e-16
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 48  NNFSASNMIGQGSFGFVYKGKL---GETGTTVAVKVMN---LKQKGAAKSFVTECEALSN 101
            +      +G GSFG V +G+         +VAVK +    L Q  A   F+ E  A+ +
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 102 VRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
           + HRNLI++  V  +   K      ++ E    GS  D + +     
Sbjct: 68  LDHRNLIRLYGVVLTPPMK------MVTELAPLGSLLDRLRKHQGHF 108

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 1e-15
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           IG+G FG V++GK    G  VAVK+ +  ++  +     E      +RH N++  I   +
Sbjct: 11  IGKGRFGEVWRGKW--RGEEVAVKIFS-SREERSWFREAEIYQTVMLRHENILGFIAADN 67

Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
             +        L+ +Y + GS  D++++    +E
Sbjct: 68  KDNGTWTQL-WLVSDYHEHGSLFDYLNRYTVTVE 100

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.4 bits (185), Expect = 1e-15
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 50  FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---GAAKSFVTECEALSNVRHRN 106
           FS    IG GSFG VY  +       VA+K M+   K      +  + E   L  +RH N
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
            I+                 L+ EY    +S+       
Sbjct: 77  TIQYRGCYLR-----EHTAWLVMEYCLGSASDLLEVHKK 110

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (184), Expect = 1e-15
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRN 106
            ++     +G+G++G V       T   VAVK++++K+     ++   E      + H N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
           ++K             + + L  EY   G   D +  
Sbjct: 65  VVKFYGHRREG-----NIQYLFLEYCSGGELFDRIEP 96

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 2e-15
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 54  NMIGQGSFGFVYKGKL--GETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIK 109
             +G G+FG V KG     +   TVAVK++  +          + E   +  + +  +++
Sbjct: 13  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVR 72

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
           +I +C        +   L+ E  + G    ++ Q+ 
Sbjct: 73  MIGICE------AESWMLVMEMAELGPLNKYLQQNR 102

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 2e-15
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 42  DLSKATNNFSASNMIGQGSFGFVYKGKL---GETGTTVAVKVMN-LKQKGAAKSFVTECE 97
             S    +F+   +IG+G FG VY G L          AVK +N +   G    F+TE  
Sbjct: 23  GPSSLIVHFN--EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI 80

Query: 98  ALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
            + +  H N++ ++ +C   +        ++  YMK G   +++        
Sbjct: 81  IMKDFSHPNVLSLLGICLRSEGS----PLVVLPYMKHGDLRNFIRNETHNPT 128

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 2e-15
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
            +      +GQG FG V+ G      T VA+K +      + ++F+ E + +  +RH  L
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTW-NGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKL 74

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
           +++  V S       +   ++ EYM  GS  D++     K
Sbjct: 75  VQLYAVVS------EEPIYIVTEYMSKGSLLDFLKGETGK 108

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 2e-15
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 44  SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSN 101
           S+A  ++     IG GS+G   K +    G  +  K ++     +   +  V+E   L  
Sbjct: 1   SRA-EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRE 59

Query: 102 VRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
           ++H N+++            +    ++ EY + G     + +   +
Sbjct: 60  LKHPNIVRYYDRIIDRTNTTL---YIVMEYCEGGDLASVITKGTKE 102

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 4e-15
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 35  FPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKS 91
           +P++ +       N+    ++IG+G+FG V K ++ + G  +   +  +K+   K   + 
Sbjct: 4   YPVLDW-------NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRD 56

Query: 92  FVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
           F  E E L  +  H N+I ++  C         +  L  EY   G+  D++ +S 
Sbjct: 57  FAGELEVLCKLGHHPNIINLLGACEHR-----GYLYLAIEYAPHGNLLDFLRKSR 106

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (181), Expect = 4e-15
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 45  KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSN 101
           K   +F    ++G+GSF  V   +   T    A+K++    + ++        E + +S 
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 102 VRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
           + H   +K+            +       Y K G    ++ +
Sbjct: 65  LDHPFFVKLYFTFQD-----DEKLYFGLSYAKNGELLKYIRK 101

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 4e-15
 Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN-LKQKGAAKSFVTECEALSNVRHR 105
              ++  + IG+G++G V           VA+K ++  + +   +  + E + L   RH 
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 106 NLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
           N+I I  +  +   + +     +  ++        +  
Sbjct: 67  NIIGINDIIRAPTIEQMK-DVYLVTHLMGADLYKLLKT 103

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (183), Expect = 5e-15
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK------QKGAAKSFVTECEALSN 101
           N+FS   +IG+G FG VY  +  +TG   A+K ++ K       +  A +       +S 
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 102 VRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEA 150
                ++ +     +      D  + I + M  G     + Q     EA
Sbjct: 64  GDCPFIVCMSYAFHT-----PDKLSFILDLMNGGDLHYHLSQHGVFSEA 107

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.1 bits (179), Expect = 9e-15
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHR 105
            + +   +++G G+F  V   +   T   VA+K +  K  +G   S   E   L  ++H 
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 106 NLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
           N++ +  +  S          LI + +  G   D + +  
Sbjct: 68  NIVALDDIYES-----GGHLYLIMQLVSGGELFDRIVEKG 102

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.2 bits (178), Expect = 1e-14
 Identities = 64/270 (23%), Positives = 101/270 (37%), Gaps = 34/270 (12%)

Query: 363 KITVIGMGDNQISG--TIPSEIKNLVNINAFGVEYN-QLTGTIPHAIGELKNLQGLALVR 419
           ++  + +    +     IPS + NL  +N   +     L G IP AI +L  L  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 420 NSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP 479
            ++ G IPD L  +  L  L   +N L G +P S+ +  NL+ +       GN + G+IP
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI----TFDGNRISGAIP 166

Query: 480 LEVGNLRNL-----------------------AEFDLSENHFSNEIPVTLSACTTLEYLH 516
              G+   L                         F     +        L          
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 517 LQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR 576
               +        +   K++  LDL  N + G +P+ L  L FL  LN+S+N+  GE+P+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 577 KGVFGNRTGIHLIGNERLCGGLEELHLPSC 606
            G            N+ LCG      LP+C
Sbjct: 287 GGNLQRFDVSAYANNKCLCGS----PLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 168 DVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLP 227
           D+ +N++ G  P  +     L ++++S N L G IP     L+  +  + + N   C  P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

Query: 228 LS 229
           L 
Sbjct: 309 LP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 192 DISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLP 251
           D+  N + G +P  L QL+ L+ L++S NN   ++P    N+   ++ +  +N+     P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

Query: 252 L 252
           L
Sbjct: 309 L 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 35/178 (19%), Positives = 53/178 (29%), Gaps = 23/178 (12%)

Query: 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENN-- 221
           L  +D   N L G  P  I++   L  I    N + G IPDS      L        N  
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 222 --------------------FSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNV 261
                                  +   S+   S      +H  +   +  L       N+
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246

Query: 262 NFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL 319
           N L +  N   G+LP   +    L  L+V  N+  G++      L        + N  
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 207 CQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSV 266
              ++LN L +  N     LP  +  +  L  +++  N   G +P   G N+   +  + 
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAY 298

Query: 267 GQNNFTGSLP 276
             N      P
Sbjct: 299 ANNKCLCGSP 308

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 2e-14
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 47  TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN--LKQKGAAKSFVTECEALSNVRH 104
              +   + +G G++G V      +TG  VAVK ++   +    AK    E   L +++H
Sbjct: 17  PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKH 76

Query: 105 RNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
            N+I ++ V +            +  ++      + +  
Sbjct: 77  ENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC 115

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 48  NNFSASNMIGQGSFGFVYKGKL---GETGTTVAVKVM-NLKQKGAAKSFVTECEALSNVR 103
                   IG+G FG V++G           VA+K   N       + F+ E   +    
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 104 HRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
           H +++K+I V +       +   +I E    G    ++      L+
Sbjct: 67  HPHIVKLIGVITE------NPVWIIMELCTLGELRSFLQVRKYSLD 106

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 2e-14
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 48  NNFSASNMIGQGSFGFVYKGKL----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV 102
           +  +   +IG G FG VYKG L    G+    VA+K +     +     F+ E   +   
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66

Query: 103 RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
            H N+I++  V S           +I EYM+ G+ + ++ + + + 
Sbjct: 67  SHHNIIRLEGVISKY-----KPMMIITEYMENGALDKFLREKDGEF 107

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.8 bits (175), Expect = 2e-14
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 11/117 (9%)

Query: 39  SYADLSKATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLK-QKGAAKSF 92
               L    NN      IG+G+FG V++ +       E  T VAVK++  +        F
Sbjct: 4   KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADF 63

Query: 93  VTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
             E   ++   + N++K++ VC+           L++EYM  G   +++   +    
Sbjct: 64  QREAALMAEFDNPNIVKLLGVCAVG-----KPMCLLFEYMAYGDLNEFLRSMSPHTV 115

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 4e-14
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLI 108
           + +G+G F  VYK +   T   VA+K + L      + G  ++ + E + L  + H N+I
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 109 KIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEA 150
            ++              +L++++M+          S     +
Sbjct: 64  GLLDAFGH-----KSNISLVFDFMETDLEVIIKDNSLVLTPS 100

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 6e-14
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 48  NNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSN 101
              + S  +GQGSFG VY+G        E  T VA+K +N          F+ E   +  
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79

Query: 102 VRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
               ++++++ V S           +I E M  G  + ++      + 
Sbjct: 80  FNCHHVVRLLGVVSQ-----GQPTLVIMELMTRGDLKSYLRSLRPAMA 122

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 6e-14
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 48  NNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQK-GAAKSFVTECEALSN 101
           N  S    +G G+FG V +         +   TVAVK++         ++ ++E + LS 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 102 V-RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
           +  H N++ ++  C+           +I EY   G   +++ +  D 
Sbjct: 83  LGNHMNIVNLLGACTI-----GGPTLVITEYCCYGDLLNFLRRKRDS 124

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 9e-14
 Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 5/101 (4%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHR 105
           + +     IGQG+FG V+K +  +TG  VA+K + ++  ++G   + + E + L  ++H 
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 106 NLIKIITVCSSIDFKGVDFKALIY---EYMKCGSSEDWMHQ 143
           N++ +I +C +        K  IY   ++ +   +    + 
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNV 110

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 1e-13
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS 115
           +G+G FG V++     +  T   K + +K          E   L+  RHRN++ +     
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFE 71

Query: 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
           S     ++   +I+E++      + ++ S  +L
Sbjct: 72  S-----MEELVMIFEFISGLDIFERINTSAFEL 99

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRH 104
            +F     +G+G FG VY  +  ++   +A+KV+    L++ G       E E  S++RH
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 105 RNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
            N++++                LI EY   G+    + + +
Sbjct: 66  PNILRLYGYFHD-----ATRVYLILEYAPLGTVYRELQKLS 101

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 1e-13
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 11/103 (10%)

Query: 50  FSASNMIGQGSFGFVYKGKLGETGTTVAVKVM-----NLKQKGAAKSFVTECEALSNVRH 104
           F    ++G G+FG VYKG     G  V + V            A K  + E   +++V +
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 105 RNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
            ++ +++ +C +   +      LI + M  G   D++ +  D 
Sbjct: 71  PHVCRLLGICLTSTVQ------LITQLMPFGCLLDYVREHKDN 107

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 3e-13
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLK------QKGAAKSFVTECEALSNVRHRNLIK 109
           +G G F  V K +   TG   A K +  +      +  + +    E   L  ++H N+I 
Sbjct: 18  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 77

Query: 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
           +  V  +          LI E +  G   D++ +
Sbjct: 78  LHEVYEN-----KTDVILILELVAGGELFDFLAE 106

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 4e-13
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTT-----VAVKVMNLK-QKGAAKSFVTECEALSN 101
            N     ++G G+FG V          T     VAVK++  K      ++ ++E + ++ 
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 102 V-RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLN 160
           +  H N++ ++  C+           LI+EY   G   +++    +K     +    +  
Sbjct: 97  LGSHENIVNLLGACTLS-----GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKR 151

Query: 161 LLKLEMIDVGDNQLIGKF 178
           L + E ++V   + +  F
Sbjct: 152 LEEEEDLNVLTFEDLLCF 169

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.6 bits (164), Expect = 6e-13
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
           N +     IG GSFG +Y G     G  VA+K+  +K K        E +    ++    
Sbjct: 7   NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVG 64

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
           I  I  C +      D+  ++ E +     + +   S 
Sbjct: 65  IPTIRWCGAEG----DYNVMVMELLGPSLEDLFNFCSR 98

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 9e-13
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMN--LKQKGAAKSFVTECEALSNVRHRNLIKIITV 113
           +G G++G V     G TG  VA+K +    + +  AK    E   L ++RH N+I ++ V
Sbjct: 26  VGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDV 85

Query: 114 CSSID-FKGVDFKALIYEYMKCGSSEDWMHQ 143
            +  +         L+  +M     +   H+
Sbjct: 86  FTPDETLDDFTDFYLVMPFMGTDLGKLMKHE 116

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 2e-12
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 49  NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRN 106
           NF     IG+G++G VYK +   TG  VA+K + L    +G   + + E   L  + H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNLLKLEM 166
           ++K++ V  +      +   L++E++     +     +   +    +       L  L  
Sbjct: 63  IVKLLDVIHT-----ENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 117

Query: 167 I 167
            
Sbjct: 118 C 118

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.9 bits (160), Expect = 2e-12
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRH 104
            +F     +G GSFG V+  +    G   A+KV+    + +    +    E   LS V H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 105 RNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
             +I++                +I +Y++ G     + +S     
Sbjct: 64  PFIIRMWGTFQD-----AQQIFMIMDYIEGGELFSLLRKSQRFPN 103

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 64.9 bits (157), Expect = 4e-12
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHR 105
             +     IG+G++G VYK +    G T A+K + L++  +G   + + E   L  ++H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHS 60

Query: 106 NLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
           N++K+  V  +        + ++         +  +      LE
Sbjct: 61  NIVKLYDVIHT------KKRLVLVFEHLDQDLKKLLDVCEGGLE 98

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 5e-12
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHR 105
             +     IG+G++G V+K K  ET   VA+K + L    +G   S + E   L  ++H+
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 106 NLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
           N++++  V  S          L++E+      + +   + D   
Sbjct: 62  NIVRLHDVLHS-----DKKLTLVFEFCDQDLKKYFDSCNGDLDP 100

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 9e-12
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN--LKQKGAAKSFVTECEALSNVRHR 105
             +     IG G+ G V           VA+K ++   + +  AK    E   +  V H+
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK 76

Query: 106 NLIKIITVCSSID-FKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
           N+I ++ V +     +      L+ E M     +    + + +
Sbjct: 77  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHE 119

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 1e-11
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 43  LSKATNNFSASNMIGQGSFGFVYKGK-LGETGTTVAVKVMNLK--QKGAAKSFVTECE-- 97
           L +A   +     IG+G++G V+K + L   G  VA+K + ++  ++G   S + E    
Sbjct: 2   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 61

Query: 98  -ALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLI 156
             L    H N++++  VC+           L++E++    +          +    +  +
Sbjct: 62  RHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDM 121

Query: 157 QRLNLLKLE 165
               L  L+
Sbjct: 122 MFQLLRGLD 130

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALS-NVR 103
            +F    M+G+GSFG V+  +  +T    A+K +    +      +  + E   LS    
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 104 HRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145
           H  L  +     +      +    + EY+  G     +   +
Sbjct: 62  HPFLTHMFCTFQT-----KENLFFVMEYLNGGDLMYHIQSCH 98

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMN---LKQKGAAKSFVTECEALSNVRH 104
           N+F    ++G+G+FG V   +   TG   A+K++    +  K      VTE   L N RH
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 105 RNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
             L  +     +      D    + EY   G     + +     E
Sbjct: 65  PFLTALKYAFQT-----HDRLCFVMEYANGGELFFHLSRERVFTE 104

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITV 113
           ++G G  G V +     T    A+K++    K        E E      +  ++++I+ V
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQDCPK-----ARREVELHWRASQCPHIVRIVDV 73

Query: 114 CSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
             ++ + G     ++ E +  G     +    D+
Sbjct: 74  YENL-YAGRKCLLIVMECLDGGELFSRIQDRGDQ 106

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 64.1 bits (155), Expect = 1e-11
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRN 106
           +++     +G+G +  V++         V VK++   +K   K    E + L N+R   N
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK---KKIKREIKILENLRGGPN 91

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
           +I +  +      +     AL++E++     +       D 
Sbjct: 92  IITLADIVKDPVSRTP---ALVFEHVNNTDFKQLYQTLTDY 129

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 62.0 bits (150), Expect = 4e-11
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 15/105 (14%)

Query: 49  NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---------KGAAKSFVTECEAL 99
           N+    ++G+G    V +     T    AVK++++           +   ++ + E + L
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 100 SNVR-HRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
             V  H N+I++     +       F  L+++ MK G   D++ +
Sbjct: 64  RKVSGHPNIIQLKDTYETN-----TFFFLVFDLMKKGELFDYLTE 103

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 9e-11
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGET-------GTTVAVKVMNLKQ-KGAAKSFVTECEAL 99
           +       +G+G+FG V   +            T VAVK++     +      ++E E +
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 100 SNV-RHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143
             + +H+N+I ++  C+           +I EY   G+  +++  
Sbjct: 73  KMIGKHKNIINLLGACTQ-----DGPLYVIVEYASKGNLREYLQA 112

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL 107
            ++     IG+GSFG +++G        VA+K    +    A     E      +     
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTG 62

Query: 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
           I  +       F       ++   +   S ED +     K  
Sbjct: 63  IPNV-----YYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFS 99

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 7e-10
 Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 13/103 (12%)

Query: 55  MIGQGSFGFVYKGKLGETGTTVAVKVMNLK------QKGAAKSFVTECEALSNVR--HRN 106
           ++G G FG VY G        VA+K +         +         E   L  V      
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 107 LIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
           +I+++           D   LI E  +              L+
Sbjct: 71  VIRLLDWFER-----PDSFVLILERPEPVQDLFDFITERGALQ 108

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.9 bits (141), Expect = 7e-10
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 56  IGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIK------ 109
           +G G F  V+  K     T VA+K++    K   ++   E + L  V   +  K      
Sbjct: 21  LGWGHFSTVWLAKDMVNNTHVAMKIVR-GDKVYTEAAEDEIKLLQRVNDADNTKEDSMGA 79

Query: 110 --IITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147
             I+ +    + KG +   ++  +   G +   + +  + 
Sbjct: 80  NHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEH 119

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 9e-10
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 48  NNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSN 101
           +       +G+G+FG V +          T  TVAVK++         ++ ++E + L +
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 102 VRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148
           + H      +        K      +I E+ K G+   ++    ++ 
Sbjct: 73  IGHHL---NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEF 116

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 12/128 (9%)

Query: 19  RKHTQKSSRTLPMEQQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAV 78
           ++   K+      + + P  + A L    + F     +G GSFG V   K  E+G   A+
Sbjct: 16  KEFLAKAKEDFLKKWETPSQNTAQL----DQFDRIKTLGTGSFGRVMLVKHKESGNHYAM 71

Query: 79  KVMN---LKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCG 135
           K+++   + +    +  + E   L  V    L+K+           +     + EY+  G
Sbjct: 72  KILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM-----VMEYVAGG 126

Query: 136 SSEDWMHQ 143
                + +
Sbjct: 127 EMFSHLRR 134

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 48  NNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMN----LKQKGAAKSFVTECEALS 100
            NF    ++G G++G V+  +     +TG   A+KV+     +++    +   TE + L 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 101 NVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE 149
           ++R    +  +       F+      LI +Y+  G     + Q     E
Sbjct: 84  HIRQSPFLVTLHYA----FQTETKLHLILDYINGGELFTHLSQRERFTE 128

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 35/216 (16%), Positives = 62/216 (28%), Gaps = 15/216 (6%)

Query: 232 NISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVY 291
            ++S   ++        +LP ++     +   L + +N        +    + L  L   
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL--- 60

Query: 292 KNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGG 351
             +              L  L     +     +  L   TL             T+   G
Sbjct: 61  --NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 352 VFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKN 411
                      ++  + +  N++    P  +     +    +  N LT      +  L+N
Sbjct: 119 AL-----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 412 LQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447
           L  L L  NSL  TIP       LL   FL  N   
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 51/216 (23%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 380 SEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRL 439
           S++ + + +N    +   LT  +P  +   K+   L L  N L      TL   T L +L
Sbjct: 7   SKVASHLEVN---CDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 440 FLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499
            L  +  +       G    L TL    +   +     +PL    L  L   D+S N  +
Sbjct: 61  NL--DRAELTKLQVDGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLT 113

Query: 500 NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559
           +     L     L+ L+L+GN      P  L     +++L L+ NNL+      L  L  
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLC 595
           L  L L  N                   L GN  LC
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 7e-04
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 505 TLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLN 564
            +S   +   ++    + + +LP  L   K    L LS N L       L     L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 565 LSYNHF 570
           L     
Sbjct: 62  LDRAEL 67

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 172 NQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIW 231
           N+L    P  +     LE + ++ N L       L  L +L+ L + EN+    +P   +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192

Query: 232 NISSLEIISLHSNRF 246
               L    LH N +
Sbjct: 193 GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 4/63 (6%)

Query: 172 NQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCK---LPL 228
           N L       +     L+ + +  N     IP        L +  +  N + C    L  
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYF 216

Query: 229 SIW 231
             W
Sbjct: 217 RRW 219

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (131), Expect = 1e-08
 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 487 NLAEFDLSENHFSNE-IPVTLSACTTLEYLHLQGNSFSG----SLPLSLKTLKSIKELDL 541
           ++   D+     S+      L      + + L     +      +  +L+   ++ EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 542 SRNNLSGQIPKYLENLLF-----LAYLNLSYNHF 570
             N L       +   L      +  L+L     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 484 NLRNLAEFDLSENHFSNE----IPVTLSACTTLEYLHLQGNSFSGSLPLSL-----KTLK 534
               L    L++   S+     +  TL A  +L  L L  N    +  L L     +   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 535 SIKELDLSRNNLSGQIPKYLENLL 558
            +++L L     S ++   L+ L 
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 5e-07
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 509 CTTLEYLHLQGNSFSG----SLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF----- 559
            + L  L L     S     SL  +L    S++ELDLS N L       L   +      
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 560 LAYLNLSYNHFEGEVPR 576
           L  L L   ++  E+  
Sbjct: 428 LEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 4e-06
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 512 LEYLHLQGNSFSGS-LPLSLKTLKSIKELDLSRNNLSGQ----IPKYLENLLFLAYLNLS 566
           ++ L +Q    S +     L  L+  + + L    L+      I   L     LA LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 567 YNHFEGE 573
            N     
Sbjct: 64  SNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 5/92 (5%)

Query: 467 LDLSGNLLGGSIPLEV-GNLRNLAEFDLSENHFSNE----IPVTLSACTTLEYLHLQGNS 521
           LD+    L  +   E+   L+      L +   +      I   L     L  L+L+ N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 522 FSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY 553
                   +          + + +L       
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 284 NLQVLDVYKNHFS-GQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEML 342
           ++Q LD+     S  +       L     + L    L      D+   + L     +  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI--SSALRVNPALAEL 60

Query: 343 YLNTNKFGGVFLRSIANL 360
            L +N+ G V +  +   
Sbjct: 61  NLRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 457 CQNLMTLSRLLDLSGNLLGG----SIPLEVGNLRNLAEFDLSENHFSNEIPVTLSA---- 508
                ++ R+L L+   +      S+   +    +L E DLS N   +   + L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 509 -CTTLEYLHLQGNSFSGSLPLSLKTLK 534
               LE L L    +S  +   L+ L+
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 303 FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGG----VFLRSIA 358
               S L  L+L+  ++   S S L     L     +  L L+ N  G       + S+ 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSL--AATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 359 NLSAKITVIGMGDNQISGTIPSEIKNLVNIN 389
                +  + + D   S  +   ++ L    
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 5/92 (5%)

Query: 276 PHSFSNASNLQVLDVYKNHFSGQVKID----FNRLSNLSRLFLSKNNLGTESTSDLDFLT 331
                  S L+VL +     S               +L  L LS N LG      L   +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL-VES 420

Query: 332 LLTNCSQMEMLYLNTNKFGGVFLRSIANLSAK 363
           +      +E L L    +       +  L   
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 11/100 (11%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 308 NLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL---SAKI 364
           ++  L +    L     SD  +  LL    Q +++ L+         + I++    +  +
Sbjct: 3   DIQSLDIQCEEL-----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 365 TVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPH 404
             + +  N++       +   +   +  ++   L      
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 51.7 bits (123), Expect = 4e-08
 Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 21/145 (14%)

Query: 54  NMIGQGSFGFVYKGKLGETGTTVAVKVMNL----------KQKGAAKSFVTECEALSNVR 103
            ++G+G    V+     E      VK   +          K+      F       +   
Sbjct: 6   KLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNE 64

Query: 104 HRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLEAGNLGLIQRLNL-- 161
            R L K+  +         +  A++ E +          ++ D++    L  + +     
Sbjct: 65  FRALQKLQGLA-VPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG 123

Query: 162 -----LKLEMIDVGDNQLIGKFPDF 181
                L    + V +  +     DF
Sbjct: 124 IVHGDLSQYNVLVSEEGI--WIIDF 146

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 8e-08
 Identities = 46/277 (16%), Positives = 91/277 (32%), Gaps = 8/277 (2%)

Query: 215 LSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTG- 273
           L ++  N     P     + S  +I+    R     PL   F+   V  + +  +     
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 274 SLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN-NLGTESTSDLDFLTL 332
           +L    S  S LQ L +     S  +     + SNL RL LS        +   L     
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 333 LTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFG 392
             +   +   +  T K   V +  ++    ++ + G   N     + + ++   N+    
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 393 VEYNQL-TGTIPHAIGELKNLQGLALVR-NSLRGTIPDTLGNLTLLNRLFLGFNNLQGNV 450
           +  + +          +L  LQ L+L R   +       LG +  L  L +      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 451 PSSLGNCQNL-MTLSRLLDLSGNLLGGSIPLEVGNLR 486
                   +L +  S    ++   +G     E+  ++
Sbjct: 242 QLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 38/277 (13%), Positives = 78/277 (28%), Gaps = 17/277 (6%)

Query: 286 QVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLN 345
           Q LD+   +    V     RL +   +         +      F     +  +++ + L+
Sbjct: 3   QTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHF-----SPFRVQHMDLS 54

Query: 346 TNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHA 405
            +      L  I +  +K+  + +   ++S  I + +    N+    +            
Sbjct: 55  NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114

Query: 406 IGE-----LKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNL 460
                   L  L        + +            + +L L                +  
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 461 MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSE-NHFSNEIPVTLSACTTLEYLHLQG 519
             L  L      +L      E   L  L    LS       E  + L    TL+ L + G
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 520 NSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLEN 556
               G+L L  + L     L ++ ++ +      + N
Sbjct: 235 IVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 492 DLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSG-QI 550
           DL+  +   ++   L +   +       +     L       + ++ +DLS + +    +
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTL 63

Query: 551 PKYLENLLFLAYLNLSYNHFEGEVPR 576
              L     L  L+L        +  
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVN 89

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSG 524
           R+L L+   L  ++   +  L  +   DLS N      P  L+A   LE L    N+   
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 525 SLPLSLKTLKSIKELDLSRNNL-SGQIPKYLENLLFLAYLNLSYNHFEGE 573
                +  L  ++EL L  N L      + L +   L  LNL  N    E
Sbjct: 58  --VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 9e-06
 Identities = 30/123 (24%), Positives = 41/123 (33%), Gaps = 11/123 (8%)

Query: 439 LFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHF 498
           L L   +L   V   L     +      LDLS N L    P  +  LR L     S+N  
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLV----THLDLSHNRLRALPP-ALAALRCLEVLQASDNAL 55

Query: 499 SNEIPVTLSACTTLEYLHLQGNSF-SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL 557
            N   V       L+ L L  N     +    L +   +  L+L  N+L        E L
Sbjct: 56  ENVDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERL 112

Query: 558 LFL 560
             +
Sbjct: 113 AEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 10/126 (7%)

Query: 415 LALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLL 474
           L L    L  T+   L  L L+  L L  N L+   P+ L   + L  L    +   N+ 
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 475 GGSIPLEVGNLRNLAEFDLSENHFSN-EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTL 533
           G +    +  L       L  N          L +C  L  L+LQGNS      +  +  
Sbjct: 60  GVANLPRLQEL------LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 534 KSIKEL 539
           + +  +
Sbjct: 114 EMLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 10/127 (7%)

Query: 191 IDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSL 250
           + ++   L   +   L QL  + +L +S N      P ++  +  LE++    N  E   
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE--- 56

Query: 251 PLNIGFNIPNVNFLSVGQNNFTG-SLPHSFSNASNLQVLDVYKNHFSGQVKID---FNRL 306
            ++   N+P +  L +  N     +      +   L +L++  N    +  I       L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 307 SNLSRLF 313
            ++S + 
Sbjct: 117 PSVSSIL 123

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 469 LSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPL 528
              N     I        +L E ++S N    E+P        LE L    N  +  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVP- 320

Query: 529 SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLN 564
             +  +++K+L +  N L  + P   E++  L  +N
Sbjct: 321 --ELPQNLKQLHVEYNPLR-EFPDIPESVEDL-RMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 451 PSSLGNCQNLMTLSRL--LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSA 508
            SS            L  L++S N L   +P     L  L     S NH + E+P     
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVP---EL 322

Query: 509 CTTLEYLHLQGNSFSG--SLPLSLKTLK 534
              L+ LH++ N       +P S++ L+
Sbjct: 323 PQNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 46/336 (13%), Positives = 92/336 (27%), Gaps = 30/336 (8%)

Query: 188 LEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFE 247
              ++++   L   +P+    L SL     S N+ + +LP    +   L+ + + +N  +
Sbjct: 40  AHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELPQS---LKSLLVDNNNLK 91

Query: 248 GSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLS 307
               L        V+   + +     +         +   L    +       I      
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 308 NLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVI 367
                 L      T   +D + L  L +        +  N                    
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 368 GMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGL------ALVRNS 421
                +    +P  ++ L   + +  +  +L  ++           GL          N+
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 422 LRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE 481
               I         L  L +  N L   +P+     +        L  S N L   +P  
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER-------LIASFNHL-AEVPEL 322

Query: 482 VGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHL 517
             NL+ L    +  N    E P       ++E L +
Sbjct: 323 PQNLKQL---HVEYNPLR-EFPDIPE---SVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 46/325 (14%), Positives = 99/325 (30%), Gaps = 41/325 (12%)

Query: 163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNF 222
           +   +++ +  L    P+   +   LE++  S N L   +P+    L+SL   + +    
Sbjct: 39  QAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 223 SCKLPLSIWNISSLEIISLHSNRFE--------------------------GSLPLNIGF 256
           S   PL  +   S   +                                   +   N   
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 257 NIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK 316
            +P +  L      +  +          L +  +   +   +   +   L  L+ ++   
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 317 NNLGTEST-SDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQIS 375
           N L T            + +    ++  L  +        +I +  +++       N  S
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 376 GTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTL 435
             I S      ++    V  N+L   +P     L+ L       N L   +P+   NL  
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHL-AEVPELPQNLKQ 328

Query: 436 LNRLFLGFNNLQGNVPSSLGNCQNL 460
           L+   + +N L+   P    + ++L
Sbjct: 329 LH---VEYNPLRE-FPDIPESVEDL 349

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 12/146 (8%)

Query: 402 IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLM 461
           +   + +  +    AL    LR      L    +   L    +++   +     N   L+
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELL 68

Query: 462 TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS 521
           +L+  L  +       +   V    NL   +LS N   +E  +       LE L L GNS
Sbjct: 69  SLN--LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126

Query: 522 FSGSLPLS-------LKTLKSIKELD 540
            S +            +    +  LD
Sbjct: 127 LSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 3/115 (2%)

Query: 452 SSLGNCQNLMTLSRLLDLS-GNLLGGSIPLEVGNLRNLAEFDLSENHFSN--EIPVTLSA 508
             L +  +L+  +  + L+  + +  ++ +   N+  L   +LS N      ++   +  
Sbjct: 30  KGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK 89

Query: 509 CTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYL 563
              L+ L+L GN       L       ++EL L  N+LS         +  +   
Sbjct: 90  APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER 144

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 41/216 (18%), Positives = 71/216 (32%), Gaps = 20/216 (9%)

Query: 362 AKITVIGMGDNQISGTIP-SEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRN 420
           A    I  G + ++ T+  +++  +  ++AFG     + G     +  L NL GL L  N
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDN 73

Query: 421 SLRGT-IPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP 479
            +        L  +T L        N+            +L +           L     
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 480 LEVGNLRNLAEFDL---------SENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSL 530
           L +   +      L         S  +        L+  + L  L    N  S   PL+ 
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA- 192

Query: 531 KTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLS 566
            +L ++ E+ L  N +S   P  L N   L  + L+
Sbjct: 193 -SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 31/221 (14%), Positives = 68/221 (30%), Gaps = 19/221 (8%)

Query: 257 NIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK 316
            + N   ++ G++N T ++  + ++   +  L  +    +    + +  L+NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQY--LNNLIGLELKD 72

Query: 317 NNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISG 376
           N +   +             S   +  ++               +    V  +       
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 377 TIPSEIKNLVNINAFGVE-------YNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDT 429
            +  ++  + NI+                  +    +  L  L  L    N +    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 430 LGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLS 470
           L +L  L  + L  N +    P  L N  NL     ++ L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNL----FIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 38/240 (15%), Positives = 74/240 (30%), Gaps = 28/240 (11%)

Query: 178 FPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE 237
           FPD     +    I    + +   +  +   L  +  LS                ++++E
Sbjct: 13  FPD--PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTG-----------VTTIE 57

Query: 238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG 297
            +   +N     L  N   ++  +  L+          P    +A          +  S 
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 298 QVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI 357
           Q+          +   L  +     + S L  LT L   S       +      +     
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS---- 173

Query: 358 ANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLAL 417
                K+T +   DN+IS   P  + +L N+    ++ NQ++   P  +    NL  + L
Sbjct: 174 -----KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 41/336 (12%), Positives = 91/336 (27%), Gaps = 27/336 (8%)

Query: 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGR----IPDSLCQLRSLNY 214
           +    L++  +            +    +++ I +S N +G      + +++   + L  
Sbjct: 5   IEGKSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 215 LSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFL---SVGQNNF 271
              S + F+ ++   I     L + +L       ++ L+     P         + ++  
Sbjct: 64  AEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 272 TGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLD--- 328
              L    +         + +      V         L  +   +N L   S  +     
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 329 ---FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNL 385
               L       Q  +            L     L           +  S  +   +K+ 
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 386 VNINAFGVEYNQLTGTIPHAIGE------LKNLQGLALVRNSLRGTIPDTL-----GNLT 434
            N+   G+    L+     A+ +         LQ L L  N +      TL       + 
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 435 LLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLS 470
            L  L L  N         +   + + +     +L 
Sbjct: 303 DLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGELD 337

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 44/348 (12%), Positives = 81/348 (23%), Gaps = 39/348 (11%)

Query: 208 QLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVG 267
           + +SL   +I+  +    +   +    S++ I L  N                       
Sbjct: 6   EGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTI--------------------- 43

Query: 268 QNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT---EST 324
                  L  + ++  +L++ +                L  L +  L    L T      
Sbjct: 44  GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103

Query: 325 SDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKN 384
           +              +   L         L   A       +  +  N+ +   P     
Sbjct: 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 163

Query: 385 LVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDT--LGNLTLLNRLFLG 442
           +   N       +       +   L  ++ +                L     L  L L 
Sbjct: 164 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 223

Query: 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP------LEVGNLRNLAEFDLSEN 496
            N       S+L          R L L+  LL                   L    L  N
Sbjct: 224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 283

Query: 497 HFSNEIPVTLSA-----CTTLEYLHLQGNSFSGSLPLSLKTLKSIKEL 539
               +   TL          L +L L GN F       +  ++ +   
Sbjct: 284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFST 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 37/325 (11%), Positives = 81/325 (24%), Gaps = 28/325 (8%)

Query: 188 LEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCK----LPLSIWNISSLEIISLHS 243
           L+   I+       +   L +  S+  + +S N    +    L  +I +   LEI     
Sbjct: 10  LKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDF 303
                               +          L  +      L  + +  N F    +   
Sbjct: 69  IFT---------------GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 113

Query: 304 NRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAK 363
               +          L            +     ++ +     N      +    N    
Sbjct: 114 IDFLSKHTPLEH-LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 172

Query: 364 ITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLR 423
            ++        S  +   +K + N        + L   + +               +   
Sbjct: 173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 232

Query: 424 GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL--LDLSGNLLGGSIPLE 481
             +   L +   L  L L    L     +++ +  + +    L  L L  N +       
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 292

Query: 482 V-----GNLRNLAEFDLSENHFSNE 501
           +       + +L   +L+ N FS E
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 486 RNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSG----SLPLSLKTLKSIKELDL 541
           ++L    ++       +   L    +++ + L GN+        L  ++ + K ++  + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 542 SRN---NLSGQIPKYLENLLFLAYLNLSYNHF 570
           S      +  +IP+ L  LL         +  
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 98

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 527 PLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF-----LAYLNLSYNHFEGE 573
             S      ++ L L  N +     + L+ ++      L +L L+ N F  E
Sbjct: 266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 22/206 (10%)

Query: 377 TIPSEIK------NLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTL 430
           T+P+ IK               ++   +T  +     EL ++  +    + ++      +
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--I 64

Query: 431 GNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAE 490
             L  + +LFL  N L    P +       + L        + L     L+  +L +   
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 491 FDLSE----------NHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELD 540
            D++              +N+I          +   L       S  + L  L  ++ L 
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184

Query: 541 LSRNNLSGQIPKYLENLLFLAYLNLS 566
           LS+N++S    + L  L  L  L L 
Sbjct: 185 LSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 34/229 (14%)

Query: 249 SLPLNIGFNIPNVNF-----LSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDF 303
           ++P  I     +  F      ++ + + T ++  + +  +++  +    +       I +
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQY 66

Query: 304 NRLSNLSRLFLSKNNL-GTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSA 362
             L N+++LFL+ N L   +  ++L  L  L           +      +   S+ +   
Sbjct: 67  --LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSL 422
                 +   Q+        K         +          + I ++  L          
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL---------- 174

Query: 423 RGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSG 471
                     LT L  L+L  N++      +L   +NL     +L+L  
Sbjct: 175 --------AGLTKLQNLYLSKNHISD--LRALAGLKNL----DVLELFS 209

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 24/166 (14%)

Query: 354 LRSI-ANLSAKITVIGMGDNQISGTIPSEIK-NLVNINAFGVEYNQLTGTIPHAIGELKN 411
           L+ I  ++    T + + DN++       +   L ++    ++ NQLTG  P+A     +
Sbjct: 20  LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 412 LQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMT--------- 462
           +Q L L  N ++         L  L  L L  N +   +P S  +  +L +         
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 463 ----------LSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHF 498
                       R   L+G       P     +R++   DL  + F
Sbjct: 140 CNCHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLS 216
           Q  N ++   +D+   + I    +  A     +AID S N +  R  D    LR L  L 
Sbjct: 13  QYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69

Query: 217 ISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFT---G 273
           ++ N            +  L  + L +N       L+   ++ ++ +L + +N  T    
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 274 SLPHSFSNASNLQVLD 289
              +       ++VLD
Sbjct: 130 YRLYVIYKVPQVRVLD 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	628
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.83
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.6
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.59
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.59
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.58
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.58
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.57
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.57
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.56
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.56
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.53
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.52
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.52
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.51
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.51
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.5
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.5
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.5
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.49
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.49
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.47
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.47
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.45
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.45
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.43
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.43
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.42
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.41
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.41
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.41
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.38
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.38
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.37
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.37
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.34
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.34
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.34
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.34
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.33
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.33
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.33
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.32
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.32
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.31
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.29
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.29
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.29
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.28
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.27
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.26
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.26
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.16
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.12
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.65
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.63
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.63
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.31
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	91.81

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=2.8e-31  Score=263.76  Aligned_cols=259  Identities=30%  Similarity=0.482  Sum_probs=225.0

Q ss_pred             CceeecccCCcccc--cchHHHhccccccEEEccC-CcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeE
Q 042887          339 MEMLYLNTNKFGGV--FLRSIANLSAKITVIGMGD-NQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGL  415 (628)
Q Consensus       339 L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  415 (628)
                      ++.|+|++|.+++.  .+..+..++ +|++|++++ |.+.|.+|..+.++++|++|++++|++.+..+..+..+.+|+.+
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            44455555544442  345555555 677777765 77888889999999999999999999999888889999999999


Q ss_pred             ecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcC
Q 042887          416 ALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSE  495 (628)
Q Consensus       416 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  495 (628)
                      ++++|.+.+..|..+..++.++.+++++|.+++.+|..+..+..+.   +.+++++|++++..|..+..+.. ..+++++
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~---~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~  206 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF---TSMTISRNRLTGKIPPTFANLNL-AFVDLSR  206 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC---CEEECCSSEEEEECCGGGGGCCC-SEEECCS
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccc---ccccccccccccccccccccccc-ccccccc
Confidence            9999999999999999999999999999999999999888877763   67899999999999988888755 4799999


Q ss_pred             CcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887          496 NHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVP  575 (628)
Q Consensus       496 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  575 (628)
                      |...+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|+.|.++++|++|||++|+|+|.+|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            99999999999999999999999999986554 68889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccCCCCCcccCCCCCCCCCC
Q 042887          576 RKGVFGNRTGIHLIGNERLCGGLEELHLPSCH  607 (628)
Q Consensus       576 ~~~~~~~l~~~~~~~n~~~c~~~~~l~l~~c~  607 (628)
                      ..+.+.+++.+++.||+.+||.    ++|.|.
T Consensus       286 ~~~~L~~L~~l~l~~N~~l~g~----plp~c~  313 (313)
T d1ogqa_         286 QGGNLQRFDVSAYANNKCLCGS----PLPACT  313 (313)
T ss_dssp             CSTTGGGSCGGGTCSSSEEEST----TSSCCC
T ss_pred             CcccCCCCCHHHhCCCccccCC----CCCCCC
Confidence            8888899999999999999985    467784

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=3.5e-30  Score=263.89  Aligned_cols=344  Identities=25%  Similarity=0.304  Sum_probs=214.4

Q ss_pred             cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCC
Q 042887          158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE  237 (628)
Q Consensus       158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~  237 (628)
                      ...+.+|++|+++++.|+..  +.+..+++|++|++++|+|++..  .|+++++|++|++++|.+++..  .+.++++|+
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~  113 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLT  113 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCC
T ss_pred             HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccc
Confidence            34566788888888887743  35777888888888888887543  3778888888888888877432  377778888


Q ss_pred             EEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887          238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN  317 (628)
Q Consensus       238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n  317 (628)
                      .|++++|.++ .++...  ....+.......|.+....+.................     ....+...+.........|
T Consensus       114 ~L~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  185 (384)
T d2omza2         114 GLTLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSN  185 (384)
T ss_dssp             EEECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSS
T ss_pred             cccccccccc-cccccc--ccccccccccccccccccccccccccccccccccccc-----hhhhhcccccccccccccc
Confidence            8888877776 333322  2556666666666665433322222222222111111     1112333333444444444


Q ss_pred             cCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccc
Q 042887          318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ  397 (628)
Q Consensus       318 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  397 (628)
                      ....        ......+++++.+++++|                         .+++..|  +...++|+.+++++|.
T Consensus       186 ~~~~--------~~~~~~l~~~~~l~l~~n-------------------------~i~~~~~--~~~~~~L~~L~l~~n~  230 (384)
T d2omza2         186 KVSD--------ISVLAKLTNLESLIATNN-------------------------QISDITP--LGILTNLDELSLNGNQ  230 (384)
T ss_dssp             CCCC--------CGGGGGCTTCSEEECCSS-------------------------CCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             cccc--------ccccccccccceeeccCC-------------------------ccCCCCc--ccccCCCCEEECCCCC
Confidence            3321        122233344444444444                         4443322  3445566666777776


Q ss_pred             ccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc
Q 042887          398 LTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS  477 (628)
Q Consensus       398 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~  477 (628)
                      +++.  ..+..+++|+.|++++|.+++..  .+..+++|+.|++++|++++..  .+..++.+    +.+++++|.+.+ 
T Consensus       231 l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l----~~l~~~~n~l~~-  299 (384)
T d2omza2         231 LKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTAL----TNLELNENQLED-  299 (384)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTC----SEEECCSSCCSC-
T ss_pred             CCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccc----cccccccccccc-
Confidence            6532  34566677777777777776433  2666777777777777776432  24445555    677778887764 


Q ss_pred             cchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcc
Q 042887          478 IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL  557 (628)
Q Consensus       478 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  557 (628)
                       ...+..++++++|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++
T Consensus       300 -~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l  372 (384)
T d2omza2         300 -ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANL  372 (384)
T ss_dssp             -CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred             -ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccC
Confidence             234677788888888888887543  36778888888888888874 33 57888888888888888886554  7888


Q ss_pred             cCCCeEeccCC
Q 042887          558 LFLAYLNLSYN  568 (628)
Q Consensus       558 ~~L~~L~ls~N  568 (628)
                      ++|+.|++++|
T Consensus       373 ~~L~~L~L~~N  383 (384)
T d2omza2         373 TRITQLGLNDQ  383 (384)
T ss_dssp             TTCSEEECCCE
T ss_pred             CCCCEeeCCCC
Confidence            88888888887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=1.8e-29  Score=258.53  Aligned_cols=357  Identities=22%  Similarity=0.292  Sum_probs=255.9

Q ss_pred             EEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccC
Q 042887          167 IDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRF  246 (628)
Q Consensus       167 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l  246 (628)
                      .+++.+.+++.+..  ..+.+|++|+++++.|+..  +.+..+++|++|+|++|+|++. | .+.++++|++|++++|.+
T Consensus        27 ~~l~~~~~~~~~~~--~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i  100 (384)
T d2omza2          27 TVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQI  100 (384)
T ss_dssp             HHTTCSSTTSEECH--HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccCH--HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccc
Confidence            35555666654432  4567888888888888743  4577888888888888888853 3 388888888888888888


Q ss_pred             cccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCC
Q 042887          247 EGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSD  326 (628)
Q Consensus       247 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  326 (628)
                      + .++. + ..+++|+.|++++|.+++..+  ......+..+....|.+.......................+.      
T Consensus       101 ~-~i~~-l-~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------  169 (384)
T d2omza2         101 A-DITP-L-ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK------  169 (384)
T ss_dssp             C-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG------
T ss_pred             c-cccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhh------
Confidence            7 4443 2 347777888877777764432  334556666666666665433322222211111111111110      


Q ss_pred             ccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCC
Q 042887          327 LDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAI  406 (628)
Q Consensus       327 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  406 (628)
                           .+....                         .........|..  .....+..+++++.+++++|.+.+..|  +
T Consensus       170 -----~~~~~~-------------------------~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~--~  215 (384)
T d2omza2         170 -----PLANLT-------------------------TLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--L  215 (384)
T ss_dssp             -----GGTTCT-------------------------TCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             -----hhcccc-------------------------cccccccccccc--ccccccccccccceeeccCCccCCCCc--c
Confidence                 011111                         222223333332  234567788999999999999986644  4


Q ss_pred             CCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccC
Q 042887          407 GELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLR  486 (628)
Q Consensus       407 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~  486 (628)
                      ...++|+.|++++|++++  ++.+..+++|+.|++++|++++..+  +..+++|    +.|++++|++.+..  .+..++
T Consensus       216 ~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L----~~L~l~~~~l~~~~--~~~~~~  285 (384)
T d2omza2         216 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL----TELKLGANQISNIS--PLAGLT  285 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC----SEEECCSSCCCCCG--GGTTCT
T ss_pred             cccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc--ccccccC----CEeeccCcccCCCC--cccccc
Confidence            667899999999999984  3468889999999999999986443  7778888    89999999998543  477899


Q ss_pred             CCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEecc
Q 042887          487 NLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLS  566 (628)
Q Consensus       487 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  566 (628)
                      .++.+++++|.+++  ...+..+++++.|++++|++++..  .+..+++|++|++++|+|++ ++ .+.++++|++|+++
T Consensus       286 ~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         286 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAG  359 (384)
T ss_dssp             TCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECC
T ss_pred             cccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECC
Confidence            99999999999985  345788999999999999999653  37899999999999999985 34 68999999999999


Q ss_pred             CCcCcccCCCCCCCCCCCcccccCC
Q 042887          567 YNHFEGEVPRKGVFGNRTGIHLIGN  591 (628)
Q Consensus       567 ~N~l~~~~p~~~~~~~l~~~~~~~n  591 (628)
                      +|++++.+| ...+++++.+++++|
T Consensus       360 ~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         360 HNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCcCCCChh-hccCCCCCEeeCCCC
Confidence            999998766 556788899998877

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.7e-29  Score=250.86  Aligned_cols=249  Identities=28%  Similarity=0.472  Sum_probs=161.2

Q ss_pred             CcccEEEccCCcccc--ccchhhhCCCCCCEEeccc-CcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          162 LKLEMIDVGDNQLIG--KFPDFIANFSALEAIDISA-NMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       162 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      .+++.|||++|++.+  .+|++++++++|++|+|++ |++++.+|.+|+++++|++|+|++|++.+..+..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368889999988887  3677888888888888875 6777777777888888888888888777777777777777777


Q ss_pred             EEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCC-CEEEcccccceeecccccccCCCCCEEEccCC
Q 042887          239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNL-QVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN  317 (628)
Q Consensus       239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n  317 (628)
                      +++++|.+.+.+|..+. .+++++.+++++|.+++.+|..+..+.++ +.+++++|++++..+..+..+.          
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~----------  198 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------  198 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC----------
T ss_pred             cccccccccccCchhhc-cCcccceeeccccccccccccccccccccccccccccccccccccccccccc----------
Confidence            77777777666665554 36666666666666666666665555554 5556666665555444443321          


Q ss_pred             cCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccc
Q 042887          318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ  397 (628)
Q Consensus       318 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  397 (628)
                                                                    ...++++++...+.+|..+..+++++.+++++|.
T Consensus       199 ----------------------------------------------~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         199 ----------------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             ----------------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             ----------------------------------------------cccccccccccccccccccccccccccccccccc
Confidence                                                          2233334444444555555666666666666666


Q ss_pred             ccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCc
Q 042887          398 LTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL  473 (628)
Q Consensus       398 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~  473 (628)
                      +.+.+| .+..+++|+.|++++|++++.+|..++++++|++|+|++|+++|.+|. ++.+++|    +.+++++|+
T Consensus       233 l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L----~~l~l~~N~  302 (313)
T d1ogqa_         233 LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRF----DVSAYANNK  302 (313)
T ss_dssp             ECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGS----CGGGTCSSS
T ss_pred             cccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCC----CHHHhCCCc
Confidence            664433 456666677777777777666666666667777777776666665553 3444444    445555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=8.7e-27  Score=230.20  Aligned_cols=266  Identities=23%  Similarity=0.266  Sum_probs=120.1

Q ss_pred             CCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEcc
Q 042887          236 LEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLS  315 (628)
Q Consensus       236 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  315 (628)
                      ++++|-+++.++ .+|..+   .+++++|+|++|+|+...+.+|.++++|++|++++|.+..+.+..|..+++|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            344444444454 445443   2445555555555554444455556666666666666655555556666666666666


Q ss_pred             CCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecc
Q 042887          316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEY  395 (628)
Q Consensus       316 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  395 (628)
                      +|+++.++...         ...++.|++..|.+.......                         +.....+..++...
T Consensus        88 ~n~l~~l~~~~---------~~~l~~L~~~~n~l~~l~~~~-------------------------~~~~~~~~~l~~~~  133 (305)
T d1xkua_          88 KNQLKELPEKM---------PKTLQELRVHENEITKVRKSV-------------------------FNGLNQMIVVELGT  133 (305)
T ss_dssp             SSCCSBCCSSC---------CTTCCEEECCSSCCCBBCHHH-------------------------HTTCTTCCEEECCS
T ss_pred             CCccCcCccch---------hhhhhhhhccccchhhhhhhh-------------------------hhcccccccccccc
Confidence            66555432210         123344444444433332222                         22222333333333


Q ss_pred             cccc--ccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCc
Q 042887          396 NQLT--GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL  473 (628)
Q Consensus       396 n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~  473 (628)
                      |...  ...+..+..+++|+.+++++|.+.. .|..+  .++|+.|++++|.+.+..+..+.+++.+    +.|++++|.
T Consensus       134 n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l----~~L~~s~n~  206 (305)
T d1xkua_         134 NPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL----AKLGLSFNS  206 (305)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTC----CEEECCSSC
T ss_pred             ccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccc----ccccccccc
Confidence            3211  1222334444555555555555442 22211  2444444554444444444444444443    444444444


Q ss_pred             CccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCcc------ccCCCCCCEEECCCCccc
Q 042887          474 LGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLS------LKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       474 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~Ls~N~l~  547 (628)
                      +.+..+..+.++++|++|+|++|+++ .+|..+..+++|++|+|++|+|+......      ...+.+|+.|+|++|+++
T Consensus       207 l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            44444444444445555555555444 23344444455555555555444322212      223344555555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2.5e-26  Score=226.94  Aligned_cols=246  Identities=20%  Similarity=0.292  Sum_probs=179.9

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH  242 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~  242 (628)
                      ..+.+|=++++++. +|..+.  +++++|+|++|+|+.+.+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~-lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCc-cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            46778888888884 455553  689999999999987767789999999999999999997778889999999999999


Q ss_pred             cccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccce--eecccccccCCCCCEEEccCCcCC
Q 042887          243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFS--GQVKIDFNRLSNLSRLFLSKNNLG  320 (628)
Q Consensus       243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~L~~n~l~  320 (628)
                      +|+++ .+|...   .+.++.|++.+|.+....+..+.....+..++...|...  ...+..|..+++|+.+++++|.+.
T Consensus        88 ~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            99998 777654   567888888888888777777778888888888877543  233456777788888888888765


Q ss_pred             CcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccc
Q 042887          321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG  400 (628)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  400 (628)
                      .++..         .++                         +++.|++++|...+..+..+.+++.++.|++++|.+.+
T Consensus       164 ~l~~~---------~~~-------------------------~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~  209 (305)
T d1xkua_         164 TIPQG---------LPP-------------------------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  209 (305)
T ss_dssp             SCCSS---------CCT-------------------------TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             ccCcc---------cCC-------------------------ccCEEECCCCcCCCCChhHhhccccccccccccccccc
Confidence            43221         012                         34455555555555556666667777777777777776


Q ss_pred             cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccccccc
Q 042887          401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNV  450 (628)
Q Consensus       401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  450 (628)
                      ..+.++.++++|++|+|++|+++ .+|.+|..+++|++|++++|+|+...
T Consensus       210 ~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         210 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             cccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccC
Confidence            66666777777777777777776 34566777777777777777776433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-26  Score=224.05  Aligned_cols=231  Identities=24%  Similarity=0.222  Sum_probs=193.5

Q ss_pred             ccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecc-cCccccccCccccCCCCCCeEe
Q 042887          362 AKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALV-RNSLRGTIPDTLGNLTLLNRLF  440 (628)
Q Consensus       362 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~  440 (628)
                      .++++|++++|+++...+..|.++++|++|++++|++....+..+..+..++.++.. .|.++...+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            367788888888887777788999999999999999988888888888888888765 5677777788889999999999


Q ss_pred             cCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCc
Q 042887          441 LGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGN  520 (628)
Q Consensus       441 L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  520 (628)
                      +++|.+....+..+....+|    +.+++++|++++..+..|..+++|++|++++|++++..+..|.++++|+++++++|
T Consensus       112 l~~n~~~~~~~~~~~~~~~L----~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAAL----QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTC----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCCcccccccccccchhccc----chhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            99999887777778888887    78899999998777788888999999999999999888888999999999999999


Q ss_pred             eeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCcc
Q 042887          521 SFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCG  596 (628)
Q Consensus       521 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~  596 (628)
                      ++++..|..|..+++|++||+++|++++..++.|..+++|++|++++|++.+..+.......++......+...|.
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~  263 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS  263 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred             cccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeC
Confidence            9998889999999999999999999998888899999999999999999988766433333344444455556664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-25  Score=216.81  Aligned_cols=224  Identities=21%  Similarity=0.226  Sum_probs=141.7

Q ss_pred             EEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec-c
Q 042887          166 MIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS-N  244 (628)
Q Consensus       166 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~-n  244 (628)
                      .++.++++++ .+|..+.  +.+++|+|++|+|+.+.+.+|.++++|++|++++|.+....+..+..+..++.++... |
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4456666666 4454332  4567777777777766666777777777777777777766666666666777666543 3


Q ss_pred             cCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCC
Q 042887          245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTEST  324 (628)
Q Consensus       245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  324 (628)
                      .++ .++...+.++++|++|++++|.+....+..+...++|+.+++++|+++++.+..|..+++|++|++++|++     
T Consensus        92 ~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-----  165 (284)
T d1ozna_          92 QLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-----  165 (284)
T ss_dssp             TCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred             ccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc-----
Confidence            333 44444444455555555555555544444455555555555555555544444444444444444444433     


Q ss_pred             CCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCc
Q 042887          325 SDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPH  404 (628)
Q Consensus       325 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  404 (628)
                                                                        .+..+..|.++++|+.+++++|++.+..|.
T Consensus       166 --------------------------------------------------~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~  195 (284)
T d1ozna_         166 --------------------------------------------------SSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (284)
T ss_dssp             --------------------------------------------------CEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             --------------------------------------------------cccchhhhccccccchhhhhhccccccChh
Confidence                                                              334445666777777777777777777777


Q ss_pred             CCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccccc
Q 042887          405 AIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG  448 (628)
Q Consensus       405 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  448 (628)
                      .|..+++|++|++++|.+.+..+..|..+++|++|++++|++..
T Consensus       196 ~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             HhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            78888888888888888887777778888888888888887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.6e-24  Score=206.35  Aligned_cols=200  Identities=24%  Similarity=0.229  Sum_probs=135.9

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG  442 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (628)
                      .+..++.+++.++. +|..+.  +++++|++++|+|++..+.+|..+++|++|+|++|+++.. | .+..+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccccc
Confidence            34556777777763 454442  4567777777777766666677777777777777777643 2 34567777777777


Q ss_pred             CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887          443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF  522 (628)
Q Consensus       443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  522 (628)
                      +|+++ ..+..+.++++|    +.|++++|.+....+..+..+.++++|++++|.++...+..+..++.|+.|++++|++
T Consensus        86 ~N~l~-~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLPAL----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             SSCCS-SCCCCTTTCTTC----CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ccccc-cccccccccccc----ccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            77776 345566666666    6677777777766666667777777777777777766666666677777777777777


Q ss_pred             eeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCccc
Q 042887          523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGE  573 (628)
Q Consensus       523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  573 (628)
                      ++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|++...
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            7666666777777777777777777 5566666677777777777776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-23  Score=201.17  Aligned_cols=200  Identities=20%  Similarity=0.195  Sum_probs=153.2

Q ss_pred             CCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeE
Q 042887          336 CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGL  415 (628)
Q Consensus       336 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  415 (628)
                      ...+.+++.+++.++.+ |..   ++.+++.|++++|++++..+..|.++++|++|++++|+|+.. + .++.+++|++|
T Consensus         9 ~~~~~~v~C~~~~L~~i-P~~---lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTAL-PPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             STTCCEEECTTSCCSSC-CSC---CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred             cCCCeEEEccCCCCCee-CcC---cCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence            34555667777777754 222   334788888888888877777788888888888888888743 2 35678888888


Q ss_pred             ecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcC
Q 042887          416 ALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSE  495 (628)
Q Consensus       416 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  495 (628)
                      ++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.++    +.|++++|.+....+..+..+++|+.|++++
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l----~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL----QELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC----CEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             ccccccccc-cccccccccccccccccccccceeecccccccccc----ccccccccccceeccccccccccchhccccc
Confidence            888888874 46677788888888888888877777777777777    7788888888877677777788888888888


Q ss_pred             CcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887          496 NHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS  547 (628)
Q Consensus       496 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  547 (628)
                      |++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++.
T Consensus       158 N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            8888777777888888888888888887 67777777888888888888776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.88  E-value=6.8e-21  Score=191.54  Aligned_cols=137  Identities=22%  Similarity=0.328  Sum_probs=77.6

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH  242 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~  242 (628)
                      ++++|||++|.++. +|+   ..++|++|+|++|+|+ .+|+.   +.+|+.|++++|.++ .+++.   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCC-CCC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            56777888777763 554   2456777777777776 44544   346777777777766 23321   1346777777


Q ss_pred             cccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCC
Q 042887          243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLG  320 (628)
Q Consensus       243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~  320 (628)
                      +|.++ .+|..  ..+++|+.|++++|.+... +.   ....+..+.+.++...  ....+..++.++.+++++|...
T Consensus       107 ~n~l~-~lp~~--~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         107 NNQLE-KLPEL--QNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SSCCS-SCCCC--TTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccc-cccch--hhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccc
Confidence            77766 55542  2366666666666665522 11   2344555555544432  2233445555555655555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-23  Score=219.51  Aligned_cols=387  Identities=16%  Similarity=0.144  Sum_probs=214.9

Q ss_pred             cccEEEccCCcccccc-chhhhCCCCCCEEecccCcCccc----ccccccCCCCCCEeecccccCcccC----CcCcc-C
Q 042887          163 KLEMIDVGDNQLIGKF-PDFIANFSALEAIDISANMLGGR----IPDSLCQLRSLNYLSISENNFSCKL----PLSIW-N  232 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~~----p~~~~-~  232 (628)
                      +|+.||++.|++++.. .+.+..+++++.|+|++|.++..    ++..+..+++|++|||++|.|+...    ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5788899998887643 34466778888888888887732    2445667888888888888876321    22222 2


Q ss_pred             CCCCCEEEeecccCcccCChh---hhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCC
Q 042887          233 ISSLEIISLHSNRFEGSLPLN---IGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNL  309 (628)
Q Consensus       233 l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  309 (628)
                      ..+|++|+|++|.+++..-..   ....+++|++|++++|.++......+...                   ........
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~-------------------l~~~~~~~  143 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG-------------------LLDPQCRL  143 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-------------------HTSTTCCC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhc-------------------cccccccc
Confidence            346777777777775321111   11234555555555555543211111100                   00001111


Q ss_pred             CEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccch----HHHhccccccEEEccCCcceee----Cchh
Q 042887          310 SRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLR----SIANLSAKITVIGMGDNQISGT----IPSE  381 (628)
Q Consensus       310 ~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~----~~~~  381 (628)
                      .........+....  .......+.....++.++++.+........    .+.........+++..+.+...    ....
T Consensus       144 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (460)
T d1z7xw1         144 EKLQLEYCSLSAAS--CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  221 (460)
T ss_dssp             CEEECTTSCCBGGG--HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             ccccccccccchhh--hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccc
Confidence            22222222111100  001111222333444455544443322111    1122222344555555544311    1123


Q ss_pred             hhccCCcCeeeeccccccc-----cCCcCCCCCCCCCeEecccCccccc----cCccccCCCCCCeEecCCcccccccCC
Q 042887          382 IKNLVNINAFGVEYNQLTG-----TIPHAIGELKNLQGLALVRNSLRGT----IPDTLGNLTLLNRLFLGFNNLQGNVPS  452 (628)
Q Consensus       382 l~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~  452 (628)
                      +...+.++.+++++|.+..     ..+........++.+++++|.+...    ....+...+.++.+++++|.++.....
T Consensus       222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             ccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4456677777777776542     1223344567788888888877632    223345677888888888888643322


Q ss_pred             ccc-----CCcchhcccceEEcCCCcCccccchh----hhccCCCCEeeCcCCcCcccC----Ccccc-CCCCCCeEECc
Q 042887          453 SLG-----NCQNLMTLSRLLDLSGNLLGGSIPLE----VGNLRNLAEFDLSENHFSNEI----PVTLS-ACTTLEYLHLQ  518 (628)
Q Consensus       453 ~~~-----~l~~L~~l~~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~~~-~l~~L~~L~Ls  518 (628)
                      .+.     ....|    +.+++++|.++......    +...++|++|+|++|++++..    +..+. ..+.|++|+|+
T Consensus       302 ~l~~~l~~~~~~L----~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls  377 (460)
T d1z7xw1         302 LLCETLLEPGCQL----ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA  377 (460)
T ss_dssp             HHHHHHTSTTCCC----CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             hhhcccccccccc----ccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECC
Confidence            221     12234    77888888887554333    344568999999999887532    22232 35678999999


Q ss_pred             Cceeeee----cCccccCCCCCCEEECCCCcccccCchhhh-----cccCCCeEeccCCcCcccC
Q 042887          519 GNSFSGS----LPLSLKTLKSIKELDLSRNNLSGQIPKYLE-----NLLFLAYLNLSYNHFEGEV  574 (628)
Q Consensus       519 ~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~ls~N~l~~~~  574 (628)
                      +|.|+..    ++..+...++|++|||++|+|+......+.     +...|+.|++++|.+..+.
T Consensus       378 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            9988742    344566778899999999988754443332     2336888999988887543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=4.1e-19  Score=178.32  Aligned_cols=139  Identities=22%  Similarity=0.313  Sum_probs=105.0

Q ss_pred             CCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEe
Q 042887          186 SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLS  265 (628)
Q Consensus       186 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  265 (628)
                      .++++|||++|.++ .+|+.   .++|++|+|++|+|+ .+|+.+   .+|++|++++|+++ .++.    -.+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~----lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD----LPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh----hcccccccc
Confidence            47899999999998 56753   578999999999999 677654   57999999999998 6653    135799999


Q ss_pred             cccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecc
Q 042887          266 VGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLN  345 (628)
Q Consensus       266 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~  345 (628)
                      +++|.++. +| .++.+++|++|++++|.+.....    ....+..+.+..+.....        ..+..++.++.++++
T Consensus       105 L~~n~l~~-lp-~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~--------~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         105 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEEL--------PELQNLPFLTAIYAD  170 (353)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC--------CCCTTCTTCCEEECC
T ss_pred             cccccccc-cc-chhhhccceeecccccccccccc----ccccccchhhcccccccc--------ccccccccceecccc
Confidence            99999984 45 36789999999999998864432    246677888877665431        234556677778887


Q ss_pred             cCCccc
Q 042887          346 TNKFGG  351 (628)
Q Consensus       346 ~n~~~~  351 (628)
                      .|....
T Consensus       171 ~n~~~~  176 (353)
T d1jl5a_         171 NNSLKK  176 (353)
T ss_dssp             SSCCSS
T ss_pred             cccccc
Confidence            776543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.2e-22  Score=208.12  Aligned_cols=379  Identities=16%  Similarity=0.156  Sum_probs=211.2

Q ss_pred             CCcCcccEEEccCCcccc----ccchhhhCCCCCCEEecccCcCcccc----ccccc-CCCCCCEeecccccCccc----
Q 042887          159 LNLLKLEMIDVGDNQLIG----KFPDFIANFSALEAIDISANMLGGRI----PDSLC-QLRSLNYLSISENNFSCK----  225 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~Ls~N~i~~~----  225 (628)
                      ..++++++|+|++|.++.    .++..+..+++|++|||++|.|+...    ...+. ...+|++|+|++|++++.    
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            356889999999999874    33566789999999999999986432    22333 235799999999999753    


Q ss_pred             CCcCccCCCCCCEEEeecccCcccCChhhhh----CCCCCcEEecccCcccccc----cccccCCCCCCEEEccccccee
Q 042887          226 LPLSIWNISSLEIISLHSNRFEGSLPLNIGF----NIPNVNFLSVGQNNFTGSL----PHSFSNASNLQVLDVYKNHFSG  297 (628)
Q Consensus       226 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~~  297 (628)
                      ++..+..+++|++|++++|.+.......+..    ..............+....    ...+.....++.++++++.+..
T Consensus       104 l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~  183 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE  183 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             ccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccc
Confidence            3566788999999999999987322222211    1222334444444333111    1223455677777777766542


Q ss_pred             ecccc----c-ccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCC
Q 042887          298 QVKID----F-NRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDN  372 (628)
Q Consensus       298 ~~~~~----~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  372 (628)
                      .....    + ........+++..+.+......  .....+...+.++.+++..|.+........               
T Consensus       184 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~---------------  246 (460)
T d1z7xw1         184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--DLCGIVASKASLRELALGSNKLGDVGMAEL---------------  246 (460)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH--HHHHHHHHCTTCCEEECCSSBCHHHHHHHH---------------
T ss_pred             ccccccccccccccccccccccccccccchhhh--cccccccccccccccchhhccccccccchh---------------
Confidence            21111    1 1123455666666654331110  112233344556666666665433211110               


Q ss_pred             cceeeCchhhhccCCcCeeeecccccccc----CCcCCCCCCCCCeEecccCccccccCccc-----cCCCCCCeEecCC
Q 042887          373 QISGTIPSEIKNLVNINAFGVEYNQLTGT----IPHAIGELKNLQGLALVRNSLRGTIPDTL-----GNLTLLNRLFLGF  443 (628)
Q Consensus       373 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~  443 (628)
                           ..........++.+++++|.+...    ....+...+.++.+++++|.++......+     .....|+.+++++
T Consensus       247 -----~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         247 -----CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             -----HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             -----hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                 111222334455555555544321    11122334555666666665543211111     1234566666666


Q ss_pred             cccccccCCccc----CCcchhcccceEEcCCCcCcccc----chhhh-ccCCCCEeeCcCCcCccc----CCccccCCC
Q 042887          444 NNLQGNVPSSLG----NCQNLMTLSRLLDLSGNLLGGSI----PLEVG-NLRNLAEFDLSENHFSNE----IPVTLSACT  510 (628)
Q Consensus       444 N~l~~~~~~~~~----~l~~L~~l~~~L~Ls~N~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~  510 (628)
                      |.++......+.    ..++|    +.|+|++|++++..    +..+. ..+.|++|+|++|++++.    ++..+..++
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L----~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  397 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFL----LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  397 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSC----CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             cchhhhhhhhcccccccccch----hhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCC
Confidence            666543322222    22334    67777777776432    22222 346688888888888743    234456678


Q ss_pred             CCCeEECcCceeeeecCcc----cc-CCCCCCEEECCCCcccccCchhh----hcccCCCeE
Q 042887          511 TLEYLHLQGNSFSGSLPLS----LK-TLKSIKELDLSRNNLSGQIPKYL----ENLLFLAYL  563 (628)
Q Consensus       511 ~L~~L~Ls~N~l~~~~~~~----~~-~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L  563 (628)
                      +|++|+|++|+|+......    +. +...|+.|++++|.+.....+.+    ...++|+.|
T Consensus       398 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         398 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            8888888888887533222    22 33479999999998875555444    234555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.7e-19  Score=168.52  Aligned_cols=105  Identities=19%  Similarity=0.214  Sum_probs=51.4

Q ss_pred             CEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEeccc
Q 042887          189 EAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQ  268 (628)
Q Consensus       189 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  268 (628)
                      +.++.+++.++ .+|..+.  +++++|++++|.|+...+.+|.++++|++|++++|.+...++...+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45555555555 3343332  34556666666655444445555556666666655554344444444444555444432


Q ss_pred             -CcccccccccccCCCCCCEEEcccccce
Q 042887          269 -NNFTGSLPHSFSNASNLQVLDVYKNHFS  296 (628)
Q Consensus       269 -N~l~~~~~~~~~~l~~L~~L~L~~N~i~  296 (628)
                       |++....+..|.++++|+++++++|++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccchhhhc
Confidence             3444444444444444444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.9e-18  Score=161.71  Aligned_cols=185  Identities=22%  Similarity=0.306  Sum_probs=125.4

Q ss_pred             cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887          363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG  442 (628)
Q Consensus       363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  442 (628)
                      +++.|++.+|.++..  +.+..+++|+.|++++|++.+..  .+..+++++.+++++|.++. + ..+..+++|+.++++
T Consensus        42 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccccccccc
Confidence            667777777777643  35777788888888888776543  36777788888888877763 2 346777788888887


Q ss_pred             CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887          443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF  522 (628)
Q Consensus       443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  522 (628)
                      ++...+..  .+...+.+    +.+.++++.+...  ..+.+.++|++|++++|.+.+.  ..+.++++|++|++++|++
T Consensus       116 ~~~~~~~~--~~~~~~~~----~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         116 STQITDVT--PLAGLSNL----QVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             TSCCCCCG--GGTTCTTC----CEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             cccccccc--hhccccch----hhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCcc
Confidence            77765322  23344444    6677777777532  3356677788888888777633  2367777888888888877


Q ss_pred             eeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccC
Q 042887          523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSY  567 (628)
Q Consensus       523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  567 (628)
                      ++ ++ .+.++++|++|+|++|++++..|  +.++++|+.|++++
T Consensus       186 ~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         186 SD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            74 33 36777788888888888775432  67777788877763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.9e-19  Score=165.53  Aligned_cols=153  Identities=14%  Similarity=0.123  Sum_probs=98.6

Q ss_pred             cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCccc-CCcCccCCCCCCEEEeec
Q 042887          165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCK-LPLSIWNISSLEIISLHS  243 (628)
Q Consensus       165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~p~~~~~l~~L~~L~L~~  243 (628)
                      +.++.++++++ .+|+.+  .+++++||+++|+++.+.+.+|.++++|++|++++|.+... .+.+|.++++++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            56777777777 455433  24678888888888766666788888888888888877653 345677788888887764


Q ss_pred             -ccCcccCChhhhhCCCCCcEEecccCcccccccc-cccCCCCCCEEEcccccceeecccccccCC-CCCEEEccCCcCC
Q 042887          244 -NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPH-SFSNASNLQVLDVYKNHFSGQVKIDFNRLS-NLSRLFLSKNNLG  320 (628)
Q Consensus       244 -n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~n~l~  320 (628)
                       |.+. .++...+.++++|+++++++|++....+. .+..++.++.+...++.+..+.+..|.+++ .++.|++++|+++
T Consensus        88 ~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccc-ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence             5565 55555556688888888888877643222 233445555555566666655555555443 4555555555554


Q ss_pred             C
Q 042887          321 T  321 (628)
Q Consensus       321 ~  321 (628)
                      .
T Consensus       167 ~  167 (242)
T d1xwdc1         167 E  167 (242)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.1e-18  Score=158.40  Aligned_cols=174  Identities=22%  Similarity=0.227  Sum_probs=124.6

Q ss_pred             CeEecccCccccccCccccCCCCCCeEecCCccccc-ccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEe
Q 042887          413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG-NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEF  491 (628)
Q Consensus       413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L  491 (628)
                      ++++.++++++ .+|..+.  +++++|+|++|+|++ ..+..|.++++|    +.|++++|.+....+..|..+++|++|
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L----~~L~L~~N~i~~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL----VKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC----CEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceE----eeeecccccccccccccccccccccee
Confidence            45666666666 3444432  567777777777764 334556667777    777888888877777788888888888


Q ss_pred             eCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCc
Q 042887          492 DLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE  571 (628)
Q Consensus       492 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  571 (628)
                      +|++|+++...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++...... ..-...++.+.+..|.++
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAAR  162 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCB
T ss_pred             eeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch-HHHhhhhhhhcccCCCeE
Confidence            8888888877778888888888888888888877788888888899999998888743322 111234566777888887


Q ss_pred             ccCCCCCCCCCCCcccccCCCCCcc
Q 042887          572 GEVPRKGVFGNRTGIHLIGNERLCG  596 (628)
Q Consensus       572 ~~~p~~~~~~~l~~~~~~~n~~~c~  596 (628)
                      ...|..  +..++..++..|...|.
T Consensus       163 c~~p~~--l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         163 CGAPSK--VRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             BCSSTT--TTTSBGGGSCTTTCCCC
T ss_pred             eCCChh--hcCCEeeecCHhhCcCC
Confidence            766643  45566677777777774

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2.2e-18  Score=161.23  Aligned_cols=141  Identities=17%  Similarity=0.258  Sum_probs=65.6

Q ss_pred             EEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccC
Q 042887          167 IDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRF  246 (628)
Q Consensus       167 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l  246 (628)
                      ++++.+++++..  .+..+.+|+.|++++|+|+..  +.+..+++|++|++++|.+++..  .+..+++|+++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccc
Confidence            344444444322  233444555555555555422  23455555555555555554322  245555555555555554


Q ss_pred             cccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCC
Q 042887          247 EGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLG  320 (628)
Q Consensus       247 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~  320 (628)
                      + .++. + .++++|+.++++++...+.  ..+...+.++.+.++.+.+...  ..+...++|++|++++|.+.
T Consensus        98 ~-~i~~-l-~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~  164 (227)
T d1h6ua2          98 K-NVSA-I-AGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS  164 (227)
T ss_dssp             S-CCGG-G-TTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             c-cccc-c-ccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccc
Confidence            4 3332 1 1355555555555544422  2244445555555555555432  22444555555555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=5.9e-18  Score=155.87  Aligned_cols=179  Identities=26%  Similarity=0.327  Sum_probs=126.7

Q ss_pred             ccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccccc
Q 042887          369 MGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG  448 (628)
Q Consensus       369 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  448 (628)
                      ++.+.+.+.++  ...+.+|+.|++++|.+.+.  ..+..+++|++|++++|++++..  .+..+++|++|++++|++++
T Consensus        31 l~~~~~~~~~~--~~~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~  104 (210)
T d1h6ta2          31 LKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD  104 (210)
T ss_dssp             TTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             hCcCccCCccC--HHHhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc
Confidence            34444443332  23456777778888777643  23667788888888888887533  35677888888888888874


Q ss_pred             ccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCc
Q 042887          449 NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPL  528 (628)
Q Consensus       449 ~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  528 (628)
                       ++ .+.++++|    +.|++++|.+..  ...+..++.++.+++++|.+++  +..+..+++|+++++++|++++. + 
T Consensus       105 -l~-~l~~l~~L----~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-  172 (210)
T d1h6ta2         105 -LS-SLKDLKKL----KSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-  172 (210)
T ss_dssp             -GG-GGTTCTTC----CEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-
T ss_pred             -cc-cccccccc----cccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-
Confidence             33 46666666    778888887763  2357778888888888888874  34566788888888888888743 3 


Q ss_pred             cccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccC
Q 042887          529 SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSY  567 (628)
Q Consensus       529 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  567 (628)
                      .+.++++|++|+|++|+|+. ++ .+.++++|++|++++
T Consensus       173 ~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            37788888888888888874 34 578888888888864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=8e-19  Score=159.36  Aligned_cols=155  Identities=23%  Similarity=0.250  Sum_probs=131.0

Q ss_pred             CCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCcc-ccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCe
Q 042887          436 LNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGG-SIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEY  514 (628)
Q Consensus       436 L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  514 (628)
                      .+.++.++++++ .+|..+.  +++    ++|+|++|+|+. ..+..|.++++|++|+|++|++....+..+..+++|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l----~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHT----TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTC----SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCC----CEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccce
Confidence            457899999998 6676553  345    889999999985 44667899999999999999999999999999999999


Q ss_pred             EECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCC
Q 042887          515 LHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERL  594 (628)
Q Consensus       515 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~  594 (628)
                      |+|++|+|++..|.+|.++++|++|+|++|+|++..++.|..+++|++|+|++|++.+..+.......+....+.++...
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAAR  162 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCB
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeE
Confidence            99999999988899999999999999999999999999999999999999999999876554332233455566666666


Q ss_pred             ccc
Q 042887          595 CGG  597 (628)
Q Consensus       595 c~~  597 (628)
                      |..
T Consensus       163 c~~  165 (192)
T d1w8aa_         163 CGA  165 (192)
T ss_dssp             BCS
T ss_pred             eCC
Confidence            754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=8.6e-18  Score=154.74  Aligned_cols=167  Identities=23%  Similarity=0.340  Sum_probs=134.4

Q ss_pred             CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      ..+.+|+.|++++|.++...  .+..+++|++|++++|.+++..  .++.+++|++|++++|++++ +| .+..+++|+.
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~  116 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccc
Confidence            34678899999999988543  3788999999999999998643  47889999999999999984 44 5888999999


Q ss_pred             EEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc
Q 042887          239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN  318 (628)
Q Consensus       239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~  318 (628)
                      |++++|.+. .++. + ..+++++.+++++|.+++  +..+..+++|+++++++|+++++.  .+..+++|++|++++|+
T Consensus       117 L~l~~~~~~-~~~~-l-~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         117 LSLEHNGIS-DING-L-VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             EECTTSCCC-CCGG-G-GGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccc-c-cccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCC
Confidence            999999887 5543 3 358999999999999874  345778899999999999998654  37889999999999998


Q ss_pred             CCCcCCCCccccccccCCCCCceeeccc
Q 042887          319 LGTESTSDLDFLTLLTNCSQMEMLYLNT  346 (628)
Q Consensus       319 l~~~~~~~~~~~~~l~~~~~L~~L~l~~  346 (628)
                      ++++        ..+..+++|+.|++++
T Consensus       190 i~~l--------~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         190 ISDL--------RALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCBC--------GGGTTCTTCSEEEEEE
T ss_pred             CCCC--------hhhcCCCCCCEEEccC
Confidence            8653        2467778888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.6e-17  Score=151.56  Aligned_cols=175  Identities=28%  Similarity=0.399  Sum_probs=114.2

Q ss_pred             ccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccccc
Q 042887          369 MGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG  448 (628)
Q Consensus       369 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  448 (628)
                      ++.+.+++..+  ...+.+++.|++++|.+...  +.+..+++|++|++++|++++..|  +.++++|++|++++|.+..
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc
Confidence            44444443322  34566777777777777643  346667777777777777775432  6777777777777777653


Q ss_pred             ccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCc
Q 042887          449 NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPL  528 (628)
Q Consensus       449 ~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  528 (628)
                      . + .+.++++|    +.|++++|.+...  ..+..+++|+.|++++|++.. + ..+..+++|++|++++|++++. + 
T Consensus        99 ~-~-~l~~l~~L----~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-  166 (199)
T d2omxa2          99 I-T-PLANLTNL----TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-  166 (199)
T ss_dssp             C-G-GGTTCTTC----SEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-
T ss_pred             c-c-cccccccc----ccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-
Confidence            2 2 35566666    6777777776632  346667777778887777763 2 3466777777888877777643 2 


Q ss_pred             cccCCCCCCEEECCCCcccccCchhhhcccCCCeE
Q 042887          529 SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYL  563 (628)
Q Consensus       529 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  563 (628)
                      .+.++++|++|++++|++++ ++ .+.++++|++|
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            36777778888888877774 22 46677777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.3e-17  Score=150.56  Aligned_cols=163  Identities=22%  Similarity=0.307  Sum_probs=122.4

Q ss_pred             CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887          159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI  238 (628)
Q Consensus       159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~  238 (628)
                      ..+.+++.|++++|+++..  +.+..+++|++|++++|++++..|  ++++++|++|++++|.+.. ++ .+.++++|++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccc
Confidence            3567788899999888753  347788899999999998885443  8888899999999888873 33 4788888999


Q ss_pred             EEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc
Q 042887          239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN  318 (628)
Q Consensus       239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~  318 (628)
                      |++++|.+. .++.  +..+++|+.|++++|++...  ..+..+++|+.|++++|++++..  .+.++++|++|++++|+
T Consensus       111 L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         111 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNK  183 (199)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccc--cchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCC
Confidence            999888876 3332  33588888888888888743  35778888888888888887653  37788888888888888


Q ss_pred             CCCcCCCCccccccccCCCCCcee
Q 042887          319 LGTESTSDLDFLTLLTNCSQMEML  342 (628)
Q Consensus       319 l~~~~~~~~~~~~~l~~~~~L~~L  342 (628)
                      +++++        .+..+++|+.|
T Consensus       184 i~~i~--------~l~~L~~L~~L  199 (199)
T d2omxa2         184 VSDIS--------VLAKLTNLESL  199 (199)
T ss_dssp             CCCCG--------GGGGCTTCSEE
T ss_pred             CCCCc--------cccCCCCCCcC
Confidence            86532        24455666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.4e-16  Score=137.74  Aligned_cols=127  Identities=13%  Similarity=0.177  Sum_probs=65.9

Q ss_pred             hCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCc
Q 042887          183 ANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVN  262 (628)
Q Consensus       183 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  262 (628)
                      .+..++++|||++|+|+. ++..+..+++|++|+|++|.|+. ++ .|..+++|++|++++|+++ .+|..++..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhccccccc-CCCccccccccccc
Confidence            344455555555555552 23444455555555555555553 22 3555555555555555555 44444444455555


Q ss_pred             EEecccCccccccc-ccccCCCCCCEEEcccccceeecc---cccccCCCCCEEE
Q 042887          263 FLSVGQNNFTGSLP-HSFSNASNLQVLDVYKNHFSGQVK---IDFNRLSNLSRLF  313 (628)
Q Consensus       263 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~  313 (628)
                      .|++++|+++.... ..+..+++|++|++++|.++....   ..+..+++|++||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            55555555553221 345566666666666666543321   2345556666655

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.1e-16  Score=152.24  Aligned_cols=98  Identities=22%  Similarity=0.373  Sum_probs=86.2

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .+.|++.+.||+|+||.||+|++..+|+.||+|+++.......+.+.+|+++|++++|||||++++++.     +....|
T Consensus        11 ~d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-----~~~~~~   85 (288)
T d2jfla1          11 EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY-----YENNLW   85 (288)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEE
T ss_pred             ccCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----eCCeEE
Confidence            356899999999999999999999999999999998766666788999999999999999999999965     478899


Q ss_pred             eeecccccCCchhhhhccccccc
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      +|||||++|+|.+++.+....++
T Consensus        86 lvmEy~~~g~L~~~~~~~~~~l~  108 (288)
T d2jfla1          86 ILIEFCAGGAVDAVMLELERPLT  108 (288)
T ss_dssp             EEEECCTTEEHHHHHHHHTSCCC
T ss_pred             EEEecCCCCcHHHHHHhcCCCCC
Confidence            99999999999998866544443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.7e-16  Score=150.82  Aligned_cols=183  Identities=17%  Similarity=0.121  Sum_probs=88.8

Q ss_pred             CCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccc-cceeec-ccccccCCCCC
Q 042887          233 ISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKN-HFSGQV-KIDFNRLSNLS  310 (628)
Q Consensus       233 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~-~~~~~~l~~L~  310 (628)
                      ..+|++||++++.+++.....++..+++|++|+++++.+++..+..++.+++|++|+++++ .++... ...+..+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3455555555555543323333444566666666666655555555666666666666664 343221 11123466677


Q ss_pred             EEEccCCc-CCCcCCCCccccccc-cCCCCCceeecccC--CcccccchHHHhccccccEEEccCCcceeeCchhhhccC
Q 042887          311 RLFLSKNN-LGTESTSDLDFLTLL-TNCSQMEMLYLNTN--KFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLV  386 (628)
Q Consensus       311 ~L~L~~n~-l~~~~~~~~~~~~~l-~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  386 (628)
                      +|+++++. +++.     .....+ ..++.|+.|+++++  .++......+                        ..+++
T Consensus       125 ~L~ls~c~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l------------------------~~~~~  175 (284)
T d2astb2         125 ELNLSWCFDFTEK-----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL------------------------VRRCP  175 (284)
T ss_dssp             EEECCCCTTCCHH-----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH------------------------HHHCT
T ss_pred             ccccccccccccc-----cchhhhcccccccchhhhccccccccccccccc------------------------ccccc
Confidence            77766642 2210     000111 12245555555543  1222111111                        23345


Q ss_pred             CcCeeeeccc-cccccCCcCCCCCCCCCeEecccC-ccccccCccccCCCCCCeEecCCc
Q 042887          387 NINAFGVEYN-QLTGTIPHAIGELKNLQGLALVRN-SLRGTIPDTLGNLTLLNRLFLGFN  444 (628)
Q Consensus       387 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N  444 (628)
                      +|+.|++++| .+++.....+..+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            5555555553 244444444555566666666653 454444445555666666666554

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.6e-16  Score=150.81  Aligned_cols=92  Identities=25%  Similarity=0.357  Sum_probs=82.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||||+++.......+.+.+|+++|++++|||||++++++.     +.+..|
T Consensus        19 ~~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~-----~~~~~~   93 (293)
T d1yhwa1          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL-----VGDELW   93 (293)
T ss_dssp             TTTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEE
T ss_pred             ccccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEE-----ECCEEE
Confidence            357999999999999999999999999999999998765555678999999999999999999999954     478899


Q ss_pred             eeecccccCCchhhhhc
Q 042887          127 LIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~  143 (628)
                      +|||||++|+|.+++.+
T Consensus        94 ivmEy~~gg~L~~~~~~  110 (293)
T d1yhwa1          94 VVMEYLAGGSLTDVVTE  110 (293)
T ss_dssp             EEEECCTTCBHHHHHHH
T ss_pred             EEEEecCCCcHHHHhhc
Confidence            99999999999988754

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.8e-16  Score=149.83  Aligned_cols=93  Identities=20%  Similarity=0.295  Sum_probs=79.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||+||+|+++.+|+.||||+++... ....+.+.+|+.+|++++|||||++++++.     +....
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~-----~~~~~   78 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ   78 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEE-----ETTEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeec-----cCcee
Confidence            357999999999999999999999999999999997653 334567999999999999999999999954     47889


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      |+|||||++|+|.+++...
T Consensus        79 ~ivmEy~~gg~L~~~l~~~   97 (271)
T d1nvra_          79 YLFLEYCSGGELFDRIEPD   97 (271)
T ss_dssp             EEEEECCTTEEGGGGSBTT
T ss_pred             EEEEeccCCCcHHHHHhcC
Confidence            9999999999999998653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-15  Score=133.14  Aligned_cols=127  Identities=19%  Similarity=0.070  Sum_probs=66.1

Q ss_pred             cCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCC
Q 042887          431 GNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT  510 (628)
Q Consensus       431 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  510 (628)
                      .++..+++|+|++|+|+. ++..+..+++|    +.|+|++|+|+..  +.+..+++|++|++++|+++...+..+..++
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L----~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IENLGATLDQF----DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCC----SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             cCcCcCcEEECCCCCCCc-cCccccccccC----CEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccc
Confidence            344444444554444442 23333334444    4455555555422  1345555666666666666544444445566


Q ss_pred             CCCeEECcCceeeeecC-ccccCCCCCCEEECCCCcccccC---chhhhcccCCCeEe
Q 042887          511 TLEYLHLQGNSFSGSLP-LSLKTLKSIKELDLSRNNLSGQI---PKYLENLLFLAYLN  564 (628)
Q Consensus       511 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~  564 (628)
                      +|+.|++++|+++.... ..+..+++|++|++++|+++...   +..+..+++|+.||
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66666666666653211 34556666666666666665322   12456666666665

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.3e-16  Score=153.84  Aligned_cols=102  Identities=24%  Similarity=0.470  Sum_probs=87.7

Q ss_pred             cccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeee
Q 042887           37 MVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSS  116 (628)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~  116 (628)
                      ...+++|+...++|++.+.||+|+||.||+|++..+|+.||||+++.... ..++|.+|+.+|++++|||||++++++. 
T Consensus         6 ~p~~~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~E~~il~~l~HpnIv~~~~~~~-   83 (287)
T d1opja_           6 SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCT-   83 (287)
T ss_dssp             STTCCTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-
T ss_pred             CCCCcccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc-hHHHHHHHHHHHHhCCCCCEecCCccEe-
Confidence            33455666677889999999999999999999998999999999875433 4567999999999999999999999964 


Q ss_pred             ccccccceeeeeecccccCCchhhhhcc
Q 042887          117 IDFKGVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                          +.+..|+|||||++|++.+++.+.
T Consensus        84 ----~~~~~~iv~E~~~~g~l~~~l~~~  107 (287)
T d1opja_          84 ----REPPFYIITEFMTYGNLLDYLREC  107 (287)
T ss_dssp             ----SSSSCEEEEECCTTCBHHHHHHHS
T ss_pred             ----eCCeeEEEeecccCcchHHHhhhc
Confidence                477889999999999999998654

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.59  E-value=4.7e-16  Score=154.06  Aligned_cols=99  Identities=20%  Similarity=0.368  Sum_probs=87.0

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||||++........+.+.+|+.+|++++|||||++++++.     +....|
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~-----~~~~~~   99 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFE-----DDNEMV   99 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEE-----ETTEEE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECCEEE
Confidence            468999999999999999999999999999999998766556678999999999999999999999954     478999


Q ss_pred             eeecccccCCchhhhhcccccccc
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKLEA  150 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~~  150 (628)
                      +|||||+||+|.+++.+....+++
T Consensus       100 ivmE~~~gg~L~~~l~~~~~~l~e  123 (350)
T d1koaa2         100 MIYEFMSGGELFEKVADEHNKMSE  123 (350)
T ss_dssp             EEECCCCSCBHHHHHTCTTSCBCH
T ss_pred             EEEEcCCCCCHHHHHHhhcCCCCH
Confidence            999999999999999765544443

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.9e-16  Score=148.93  Aligned_cols=95  Identities=17%  Similarity=0.311  Sum_probs=80.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||.||+|+++.+|+.||+|.++...  +...+.+.+|+++|++++|||||++++++.+   +....
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~---~~~~~   79 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID---RTNTT   79 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC-------C
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEe---CCCCE
Confidence            367999999999999999999999999999999997643  3345678999999999999999999998753   33567


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+|||||++|+|.+++.+.
T Consensus        80 ~~ivmEy~~~g~L~~~i~~~   99 (269)
T d2java1          80 LYIVMEYCEGGDLASVITKG   99 (269)
T ss_dssp             EEEEEECCTTEEHHHHHHHH
T ss_pred             EEEEEecCCCCcHHHHHHhc
Confidence            89999999999999998653

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.59  E-value=5.4e-16  Score=153.70  Aligned_cols=99  Identities=19%  Similarity=0.269  Sum_probs=86.5

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .+.|++.+.||+|+||.||+|++..+|+.||||+++.......+.+.+|+.+|++++|||||++++++     ++....|
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~-----~~~~~~~  102 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF-----EDKYEMV  102 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEE-----ECSSEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEE-----EECCEEE
Confidence            45799999999999999999999999999999999876555567889999999999999999999994     4588999


Q ss_pred             eeecccccCCchhhhhcccccccc
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKLEA  150 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~~  150 (628)
                      +|||||+||+|.+++......+++
T Consensus       103 ivmE~~~gg~L~~~~~~~~~~l~e  126 (352)
T d1koba_         103 LILEFLSGGELFDRIAAEDYKMSE  126 (352)
T ss_dssp             EEEECCCCCBHHHHTTCTTCCBCH
T ss_pred             EEEEcCCCChHHHHHHhcCCCCCH
Confidence            999999999999888766544443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2.3e-15  Score=124.84  Aligned_cols=77  Identities=23%  Similarity=0.393  Sum_probs=40.2

Q ss_pred             EEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeeccc
Q 042887          166 MIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNR  245 (628)
Q Consensus       166 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~  245 (628)
                      +|||++|+++.. + .+..+++|++|++++|.++ .+|..|+.+++|++|++++|.|+. +| .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            455555555522 2 2555555555555555555 334455555555555555555552 22 25555555555555555


Q ss_pred             Cc
Q 042887          246 FE  247 (628)
Q Consensus       246 l~  247 (628)
                      ++
T Consensus        77 i~   78 (124)
T d1dcea3          77 LQ   78 (124)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=1.5e-16  Score=158.81  Aligned_cols=249  Identities=16%  Similarity=0.191  Sum_probs=127.2

Q ss_pred             ccccccCCCCCCEEEcccccceeeccc----ccccCCCCCEEEccCCcCCCcCCCCc----cccccccCCCCCceeeccc
Q 042887          275 LPHSFSNASNLQVLDVYKNHFSGQVKI----DFNRLSNLSRLFLSKNNLGTESTSDL----DFLTLLTNCSQMEMLYLNT  346 (628)
Q Consensus       275 ~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~  346 (628)
                      +...+....+|++|+|++|.++.....    .+...++|+.++++++..........    .....+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            345567788899999998887543322    34556788888887775543221110    1122334445555555555


Q ss_pred             CCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCC-------------CCCCCCC
Q 042887          347 NKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAI-------------GELKNLQ  413 (628)
Q Consensus       347 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-------------~~l~~L~  413 (628)
                      |.++......+.                     ..+...++|+.|++++|.+.......+             ...+.|+
T Consensus       103 n~i~~~~~~~l~---------------------~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~  161 (344)
T d2ca6a1         103 NAFGPTAQEPLI---------------------DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR  161 (344)
T ss_dssp             CCCCTTTHHHHH---------------------HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             cccccccccchh---------------------hhhcccccchheecccccccccccccccccccccccccccccCcccc
Confidence            554433222222                     234455667777777776542111111             1233444


Q ss_pred             eEecccCccccc----cCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc-----cchhhhc
Q 042887          414 GLALVRNSLRGT----IPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS-----IPLEVGN  484 (628)
Q Consensus       414 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~-----~~~~~~~  484 (628)
                      .+++++|.++..    +...+...+.|                            +.|++++|+++..     +...+..
T Consensus       162 ~l~l~~n~i~~~~~~~l~~~l~~~~~L----------------------------~~L~L~~n~i~~~g~~~~l~~~l~~  213 (344)
T d2ca6a1         162 SIICGRNRLENGSMKEWAKTFQSHRLL----------------------------HTVKMVQNGIRPEGIEHLLLEGLAY  213 (344)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTC----------------------------CEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             eeecccccccccccccccchhhhhhhh----------------------------cccccccccccccccccchhhhhcc
Confidence            555554444321    11122233344                            4455555554421     1223445


Q ss_pred             cCCCCEeeCcCCcCccc----CCccccCCCCCCeEECcCceeeeecCc----ccc--CCCCCCEEECCCCcccccC----
Q 042887          485 LRNLAEFDLSENHFSNE----IPVTLSACTTLEYLHLQGNSFSGSLPL----SLK--TLKSIKELDLSRNNLSGQI----  550 (628)
Q Consensus       485 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~--~l~~L~~L~Ls~N~l~~~~----  550 (628)
                      .++|+.|++++|.++..    +...+..+++|++|+|++|.|++....    .+.  ..+.|++|++++|+|+...    
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l  293 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  293 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHH
Confidence            56666666666665432    223445566666666666666543222    222  2345777777777765322    


Q ss_pred             chhhh-cccCCCeEeccCCcCcc
Q 042887          551 PKYLE-NLLFLAYLNLSYNHFEG  572 (628)
Q Consensus       551 ~~~~~-~l~~L~~L~ls~N~l~~  572 (628)
                      ...+. +.++|+.|++++|++..
T Consensus       294 ~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         294 KTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHccCCCCCEEECCCCcCCC
Confidence            22232 45667777777777653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=3.7e-15  Score=123.54  Aligned_cols=118  Identities=19%  Similarity=0.276  Sum_probs=98.7

Q ss_pred             CEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEeccc
Q 042887          189 EAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQ  268 (628)
Q Consensus       189 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  268 (628)
                      |+|||++|+++ .++ .+..+++|++|++++|.|+ .+|..++.+++|++|++++|.++ .+|. + ..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~-~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-V-ANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-G-TTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc-c-ccccccCeEECCC
Confidence            68999999998 444 4899999999999999998 57888999999999999999998 6664 3 4699999999999


Q ss_pred             Ccccccc-cccccCCCCCCEEEcccccceeec---ccccccCCCCCEE
Q 042887          269 NNFTGSL-PHSFSNASNLQVLDVYKNHFSGQV---KIDFNRLSNLSRL  312 (628)
Q Consensus       269 N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~l~~L~~L  312 (628)
                      |+++... ...++.+++|++|++++|+++...   ......+|+|+.|
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999654 357899999999999999997542   3334567888776

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8e-16  Score=150.76  Aligned_cols=97  Identities=19%  Similarity=0.290  Sum_probs=84.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|+++.... ....+.+|+++|+.++|||||++++++     ++....|
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~-----~~~~~~~   77 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESF-----ESMEELV   77 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEE-----EETTEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCCeEEEEE-----EECCEEE
Confidence            5789999999999999999999999999999999976543 335688999999999999999999994     4578999


Q ss_pred             eeecccccCCchhhhhccccccc
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      +|||||+||+|.+++.+....++
T Consensus        78 lvmE~~~gg~L~~~i~~~~~~l~  100 (321)
T d1tkia_          78 MIFEFISGLDIFERINTSAFELN  100 (321)
T ss_dssp             EEECCCCCCBHHHHHTSSSCCCC
T ss_pred             EEEecCCCCcHHHHHHhcCCCCC
Confidence            99999999999999976654444

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.1e-16  Score=148.76  Aligned_cols=93  Identities=22%  Similarity=0.338  Sum_probs=81.6

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc------cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ------KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~------~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .+.|++.+.||+|+||+||+|++..+|+.||||++++..      ....+.+.+|+.+|++++|||||++++++     +
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~-----~   83 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVY-----E   83 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEE-----E
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----E
Confidence            357999999999999999999999999999999997542      12346799999999999999999999995     4


Q ss_pred             ccceeeeeecccccCCchhhhhcc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      +....|+|||||++|+|.+++...
T Consensus        84 ~~~~~~iv~E~~~gg~L~~~i~~~  107 (293)
T d1jksa_          84 NKTDVILILELVAGGELFDFLAEK  107 (293)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHH
T ss_pred             ECCEEEEEEEcCCCccccchhccc
Confidence            578999999999999999998754

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1e-15  Score=145.40  Aligned_cols=93  Identities=25%  Similarity=0.387  Sum_probs=81.7

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|+++.+|+.||+|++.+..   ....+.+.+|+++|++++|||||++++++.     +...
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~   80 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH-----DATR   80 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEE-----ECCE
Confidence            57999999999999999999999999999999997532   334567899999999999999999999954     4788


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+|||||++|+|.+++....
T Consensus        81 ~~ivmEy~~~g~L~~~l~~~~  101 (263)
T d2j4za1          81 VYLILEYAPLGTVYRELQKLS  101 (263)
T ss_dssp             EEEEEECCTTCBHHHHHHHHS
T ss_pred             EEEEEeecCCCcHHHHHhhcC
Confidence            999999999999999987543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.57  E-value=6.7e-16  Score=153.90  Aligned_cols=260  Identities=18%  Similarity=0.218  Sum_probs=162.8

Q ss_pred             CChhhhhCCCCCcEEecccCccccc----ccccccCCCCCCEEEcccccceeec----------ccccccCCCCCEEEcc
Q 042887          250 LPLNIGFNIPNVNFLSVGQNNFTGS----LPHSFSNASNLQVLDVYKNHFSGQV----------KIDFNRLSNLSRLFLS  315 (628)
Q Consensus       250 ~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~----------~~~~~~l~~L~~L~L~  315 (628)
                      +...+. ...+|+.|+|++|.+...    +...+...++|+.|+++++......          ...+...++|++|+++
T Consensus        23 l~~~L~-~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          23 VFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHh-hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            333443 488999999999998753    3345678899999999987653221          1234567899999999


Q ss_pred             CCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecc
Q 042887          316 KNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEY  395 (628)
Q Consensus       316 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  395 (628)
                      +|.++.....  .....+..+++|+.|++++|.++......++..   +..+         .........+.|+.+.+++
T Consensus       102 ~n~i~~~~~~--~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~---l~~~---------~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1         102 DNAFGPTAQE--PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA---LQEL---------AVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             SCCCCTTTHH--HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH---HHHH---------HHHHHHHTCCCCCEEECCS
T ss_pred             cccccccccc--chhhhhcccccchheeccccccccccccccccc---cccc---------ccccccccCcccceeeccc
Confidence            9988763222  233455677899999999998765443333321   1000         0112235667899999999


Q ss_pred             ccccccC----CcCCCCCCCCCeEecccCccccc-----cCccccCCCCCCeEecCCcccccccCCcccCCcchhcccce
Q 042887          396 NQLTGTI----PHAIGELKNLQGLALVRNSLRGT-----IPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL  466 (628)
Q Consensus       396 n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~  466 (628)
                      |.+....    ...+...+.|+.|++++|.++..     +...+..+++|+.|++++|.++.....              
T Consensus       168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~--------------  233 (344)
T d2ca6a1         168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS--------------  233 (344)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH--------------
T ss_pred             ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc--------------
Confidence            9886432    23345678999999999998742     223455566677777766665422111              


Q ss_pred             EEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCcc----cc--CCCCCCeEECcCceeeee----cCcccc-CCCC
Q 042887          467 LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVT----LS--ACTTLEYLHLQGNSFSGS----LPLSLK-TLKS  535 (628)
Q Consensus       467 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~--~l~~L~~L~Ls~N~l~~~----~~~~~~-~l~~  535 (628)
                                .+...+...++|++|++++|.+++.....    +.  ..+.|++|++++|.|+..    +...+. +.++
T Consensus       234 ----------~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~  303 (344)
T d2ca6a1         234 ----------ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  303 (344)
T ss_dssp             ----------HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             ----------cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCC
Confidence                      11223444556666666666665432222    22  235677888888877632    222332 4678


Q ss_pred             CCEEECCCCcccc
Q 042887          536 IKELDLSRNNLSG  548 (628)
Q Consensus       536 L~~L~Ls~N~l~~  548 (628)
                      |+.|+|++|++..
T Consensus       304 L~~L~l~~N~~~~  316 (344)
T d2ca6a1         304 LLFLELNGNRFSE  316 (344)
T ss_dssp             CCEEECTTSBSCT
T ss_pred             CCEEECCCCcCCC
Confidence            8888888888863

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.2e-16  Score=147.62  Aligned_cols=93  Identities=17%  Similarity=0.290  Sum_probs=81.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||||++.+..   ....+.+.+|+++|++++|||||++++++     ++...
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----~~~~~   82 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTF-----QDDEK   82 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEE-----ECSSE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEE-----EECCE
Confidence            56999999999999999999999999999999997532   33456799999999999999999999995     45788


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+|||||++|+|.+++...+
T Consensus        83 ~~ivmEy~~gg~L~~~~~~~~  103 (288)
T d1uu3a_          83 LYFGLSYAKNGELLKYIRKIG  103 (288)
T ss_dssp             EEEEECCCTTEEHHHHHHHHS
T ss_pred             EEEEEEccCCCCHHHhhhccC
Confidence            999999999999999886543

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=8.8e-16  Score=149.34  Aligned_cols=94  Identities=20%  Similarity=0.307  Sum_probs=77.8

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ..+.|++.+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+.+|++++|||||++++++     ++.+.
T Consensus         7 i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~-----~~~~~   81 (307)
T d1a06a_           7 IRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIY-----ESGGH   81 (307)
T ss_dssp             GGGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEE-----ECSSE
T ss_pred             CccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEE-----EECCE
Confidence            3467999999999999999999999999999999997643 23345688999999999999999999994     45788


Q ss_pred             eeeeecccccCCchhhhhcc
Q 042887          125 KALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .|+|||||+||+|.+++...
T Consensus        82 ~~lvmE~~~gg~L~~~l~~~  101 (307)
T d1a06a_          82 LYLIMQLVSGGELFDRIVEK  101 (307)
T ss_dssp             EEEEECCCCSCBHHHHHHTC
T ss_pred             EEEEEeccCCCcHHHhhhcc
Confidence            99999999999999999754

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.1e-16  Score=150.73  Aligned_cols=94  Identities=17%  Similarity=0.271  Sum_probs=82.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||+||+|++..+|+.||+|+++... ....+++.+|+.+|++++|||||++++++.     +....
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~-----~~~~~   79 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFY-----SDGEI   79 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEE-----CSSEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECCEE
Confidence            467999999999999999999999999999999997643 344567899999999999999999999954     47889


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      |+|||||++|+|.+++.+..
T Consensus        80 ~iVmEy~~gg~L~~~l~~~~   99 (322)
T d1s9ja_          80 SICMEHMDGGSLDQVLKKAG   99 (322)
T ss_dssp             EEEEECCTTEEHHHHHHHHS
T ss_pred             EEEEEcCCCCcHHHHHhhcC
Confidence            99999999999999987543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.2e-15  Score=141.60  Aligned_cols=59  Identities=27%  Similarity=0.223  Sum_probs=30.0

Q ss_pred             CCCCcEEecccCccccc-ccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccC
Q 042887          258 IPNVNFLSVGQNNFTGS-LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK  316 (628)
Q Consensus       258 l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  316 (628)
                      ..+|++|+++++.++.. .+..+..+++|++|+++++.+++.....+..+++|++|++++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            44555555555555432 223344555555555555555444444445555555555554

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.53  E-value=4.6e-15  Score=141.90  Aligned_cols=93  Identities=22%  Similarity=0.365  Sum_probs=81.0

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc---------chhhhHHHHHHHHhhcC-CCCcccccceeeec
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---------GAAKSFVTECEALSNVR-HRNLIKIITVCSSI  117 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---------~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~  117 (628)
                      ++|++.+.||+|+||+||+|++..+|+.||||++++...         ...+++.+|+.+|++++ |||||++++++   
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~---   79 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY---   79 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE---
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeec---
Confidence            689999999999999999999999999999999976431         12346889999999997 99999999995   


Q ss_pred             cccccceeeeeecccccCCchhhhhccc
Q 042887          118 DFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                        .+.+..|+|||||++|+|.+++....
T Consensus        80 --~~~~~~~ivmE~~~~g~L~~~l~~~~  105 (277)
T d1phka_          80 --ETNTFFFLVFDLMKKGELFDYLTEKV  105 (277)
T ss_dssp             --ECSSEEEEEEECCTTCBHHHHHHHHS
T ss_pred             --ccCcceEEEEEcCCCchHHHHHHhcC
Confidence              45889999999999999999997543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.8e-15  Score=138.80  Aligned_cols=95  Identities=23%  Similarity=0.455  Sum_probs=81.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      ++|++.+.||+|+||.||+|+++ +++.||||.++.... ..+.|.+|+.++++++|||||++++++.     +....++
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~-----~~~~~~i   76 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCT-----KQRPIFI   76 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEET-TTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----CSSSEEE
T ss_pred             HHCEEeEEEecCCCeEEEEEEEC-CCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEe-----eCCceEE
Confidence            57999999999999999999994 778999999986543 3467999999999999999999999965     3678999


Q ss_pred             eecccccCCchhhhhccccccc
Q 042887          128 IYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      ||||+++|++.+++.......+
T Consensus        77 v~Ey~~~g~l~~~~~~~~~~~~   98 (258)
T d1k2pa_          77 ITEYMANGCLLNYLREMRHRFQ   98 (258)
T ss_dssp             EEECCTTEEHHHHHHSGGGCCC
T ss_pred             EEEccCCCcHHHhhhccccCCc
Confidence            9999999999999776655443

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.8e-15  Score=139.70  Aligned_cols=94  Identities=29%  Similarity=0.411  Sum_probs=78.8

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      |++.+.||+|+||+||+|++..+++.||+|.+....  ....+.+.+|+++|++++|||||++++++.+. .......|+
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~-~~~~~~~~i   89 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeec-cccCCEEEE
Confidence            356678999999999999999999999999987542  34456799999999999999999999986541 233567899


Q ss_pred             eecccccCCchhhhhcc
Q 042887          128 IYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~  144 (628)
                      |||||++|+|.+++.+.
T Consensus        90 vmE~~~~g~L~~~l~~~  106 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKRF  106 (270)
T ss_dssp             EEECCCSCBHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHhcc
Confidence            99999999999998654

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.2e-15  Score=145.48  Aligned_cols=94  Identities=26%  Similarity=0.339  Sum_probs=83.1

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||+|++++.   .....+.+.+|+.+|++++|||||++++++     ++..
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~-----~~~~   78 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAF-----QTHD   78 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEE-----ECSS
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeee-----cccc
Confidence            46799999999999999999999999999999999764   233457789999999999999999999994     5588


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+|||||++|+|.+++.+.+
T Consensus        79 ~~~iv~ey~~gg~L~~~~~~~~  100 (337)
T d1o6la_          79 RLCFVMEYANGGELFFHLSRER  100 (337)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHS
T ss_pred             ccccceeccCCCchhhhhhccc
Confidence            9999999999999999987654

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.8e-15  Score=139.56  Aligned_cols=94  Identities=23%  Similarity=0.461  Sum_probs=80.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      ++|++.+.||+|+||.||+|++. +++.||||+++.... ..+.|.+|++++++++|||||++++++.+     .+..++
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~-~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-----~~~~~l   77 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLE-----QAPICL   77 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEET-TTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSCEE
T ss_pred             HHcEEEEEEeeCCCeEEEEEEEC-CCCEEEEEEECCCcC-cHHHHHHHHHHHHhcCCCCcccccceecc-----CCceEE
Confidence            57899999999999999999985 577899999976433 34679999999999999999999999653     678899


Q ss_pred             eecccccCCchhhhhcccccc
Q 042887          128 IYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~~~~  148 (628)
                      |||||++|+|.+++.......
T Consensus        78 v~E~~~~g~L~~~l~~~~~~~   98 (263)
T d1sm2a_          78 VFEFMEHGCLSDYLRTQRGLF   98 (263)
T ss_dssp             EEECCTTCBHHHHHHTTTTCC
T ss_pred             EEEecCCCcHHHHhhccccCC
Confidence            999999999999987655443

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=6.2e-15  Score=143.30  Aligned_cols=91  Identities=26%  Similarity=0.296  Sum_probs=78.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      +.|+..+.||+|+||.||+|++..+|+.||||+++...   ....+.+.+|+.+|++++|||||++++++.+     ...
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~~   89 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----EHT   89 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEE-----CCE
Confidence            35899999999999999999999999999999997643   2344678999999999999999999999654     788


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .|+|||||++|++..+...
T Consensus        90 ~~iv~E~~~~g~l~~~~~~  108 (309)
T d1u5ra_          90 AWLVMEYCLGSASDLLEVH  108 (309)
T ss_dssp             EEEEEECCSEEHHHHHHHH
T ss_pred             EEEEEEecCCCchHHHHHh
Confidence            9999999999998766543

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=7.8e-15  Score=143.16  Aligned_cols=93  Identities=23%  Similarity=0.287  Sum_probs=81.8

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|+++.+|+.||||++++.   .....+.+.+|+.+|+.++|||||++++++     .+...
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~-----~~~~~   78 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTF-----QDAQQ   78 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEE-----ECSSE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeE-----eeCCe
Confidence            5799999999999999999999999999999999753   234457789999999999999999999995     45889


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+|||||+||++.+++....
T Consensus        79 ~~ivmE~~~gg~l~~~~~~~~   99 (316)
T d1fota_          79 IFMIMDYIEGGELFSLLRKSQ   99 (316)
T ss_dssp             EEEEECCCCSCBHHHHHHHTS
T ss_pred             eeeEeeecCCccccccccccc
Confidence            999999999999988886554

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.4e-15  Score=142.03  Aligned_cols=98  Identities=28%  Similarity=0.425  Sum_probs=80.5

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      |+...++|++.+.||+|+||.||+|++.   ..||||+++..  .....+.|.+|+++|++++|||||++++++.     
T Consensus         3 wei~~~~~~~~~~lG~G~fg~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-----   74 (276)
T d1uwha_           3 WEIPDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-----   74 (276)
T ss_dssp             CBCCTTCCCCCSEEEECSSCEEEEEESS---SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred             cccccccEEEEEEEeeCCCcEEEEEEEC---CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-----
Confidence            3445678999999999999999999873   35999999754  3445678999999999999999999998854     


Q ss_pred             ccceeeeeecccccCCchhhhhccccccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                       ....++|||||++|+|.+++......++
T Consensus        75 -~~~~~lv~Ey~~~g~L~~~l~~~~~~~~  102 (276)
T d1uwha_          75 -APQLAIVTQWCEGSSLYHHLHIIETKFE  102 (276)
T ss_dssp             -SSSCEEEEECCCEEEHHHHHHTSCCCCC
T ss_pred             -ccEEEEEEecCCCCCHHHHHhhccCCCC
Confidence             3567999999999999999976554443

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.9e-15  Score=141.69  Aligned_cols=95  Identities=24%  Similarity=0.441  Sum_probs=79.2

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      |+.+.++|++.+.||+|+||.||+|++. +++.||||+++.... ..+.|.+|+++|++++|||||++++++.      .
T Consensus         8 wei~~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~E~~~l~~l~HpnIv~~~g~~~------~   79 (272)
T d1qpca_           8 WEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVT------Q   79 (272)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC------S
T ss_pred             eecCHHHeEEeEEEecCCCcEEEEEEEC-CCCEEEEEEEccCcC-CHHHHHHHHHHHHhCCCCCEeEEEeeec------c
Confidence            3445678999999999999999999984 678899999976433 3467999999999999999999999864      3


Q ss_pred             ceeeeeecccccCCchhhhhccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +..|+|||||++|+|.+++....
T Consensus        80 ~~~~iv~Ey~~~g~L~~~~~~~~  102 (272)
T d1qpca_          80 EPIYIITEYMENGSLVDFLKTPS  102 (272)
T ss_dssp             SSCEEEEECCTTCBHHHHTTSHH
T ss_pred             CCeEEEEEeCCCCcHHHHHhhcC
Confidence            45789999999999998775443

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=8e-15  Score=142.09  Aligned_cols=98  Identities=24%  Similarity=0.440  Sum_probs=79.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCc---EEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGT---TVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~---~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      .+.|++.+.||+|+||.||+|++..+|+   .||||.+... .....+.|.+|+.+|++++|||||++++++.     ..
T Consensus        25 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~-----~~   99 (299)
T d1jpaa_          25 ISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVT-----KS   99 (299)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----SS
T ss_pred             hhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEe-----eC
Confidence            3567888999999999999999977665   5889988654 3345577999999999999999999999964     36


Q ss_pred             ceeeeeecccccCCchhhhhccccccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      ...++|||||++|+|.+++......++
T Consensus       100 ~~~~iv~Ey~~~g~L~~~~~~~~~~l~  126 (299)
T d1jpaa_         100 TPVMIITEFMENGSLDSFLRQNDGQFT  126 (299)
T ss_dssp             SSCEEEEECCTTEEHHHHHHTTTTCSC
T ss_pred             CEEEEEEEecCCCcceeeeccccCCCC
Confidence            789999999999999998876554443

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-14  Score=139.56  Aligned_cols=97  Identities=20%  Similarity=0.421  Sum_probs=77.5

Q ss_pred             hCCCCcCce-eecCCceeEEEEEECCC--CcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           47 TNNFSASNM-IGQGSFGFVYKGKLGET--GTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        47 ~~~~~~~~~-iG~G~~g~V~~~~~~~~--~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      +++|.+.+. ||+|+||.||+|.++.+  +..||||+++... ....++|.+|+++|++++|||||++++++.      .
T Consensus         7 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~------~   80 (285)
T d1u59a_           7 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------A   80 (285)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE------S
T ss_pred             ccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeec------c
Confidence            456777774 99999999999988643  4579999997643 445678999999999999999999999864      2


Q ss_pred             ceeeeeecccccCCchhhhhccccccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      +..|+|||||++|+|.+++......++
T Consensus        81 ~~~~lvmE~~~~g~L~~~l~~~~~~l~  107 (285)
T d1u59a_          81 EALMLVMEMAGGGPLHKFLVGKREEIP  107 (285)
T ss_dssp             SSEEEEEECCTTEEHHHHHTTCTTTSC
T ss_pred             CeEEEEEEeCCCCcHHHHhhccccCCC
Confidence            457999999999999999866554443

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.6e-14  Score=141.17  Aligned_cols=93  Identities=20%  Similarity=0.335  Sum_probs=79.4

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHh-hcCCCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALS-NVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~-~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ++|++.+.||+|+||+||+|++..+|+.||||++++..   ....+.+.+|+.++. .++|||||++++++     .+..
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~-----~~~~   76 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTF-----QTKE   76 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEE-----ECSS
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEE-----ccCC
Confidence            67999999999999999999999999999999997542   334456778887765 67999999999995     4578


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+|||||++|+|.+++....
T Consensus        77 ~~yivmEy~~~g~L~~~i~~~~   98 (320)
T d1xjda_          77 NLFFVMEYLNGGDLMYHIQSCH   98 (320)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHS
T ss_pred             ceeEEEeecCCCcHHHHhhccC
Confidence            8999999999999999987544

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.47  E-value=2.1e-14  Score=137.89  Aligned_cols=98  Identities=15%  Similarity=0.219  Sum_probs=81.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||||+++...   ....+.+.+|+.+|+.++|||||++++++... .....
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~-~~~~~   84 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAE-TPAGP   84 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-CSSSE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeec-cCCCc
Confidence            467999999999999999999999999999999997542   33456799999999999999999999987541 11234


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+|||||+||+|.+++...+
T Consensus        85 ~~~lvmE~~~g~~L~~~~~~~~  106 (277)
T d1o6ya_          85 LPYIVMEYVDGVTLRDIVHTEG  106 (277)
T ss_dssp             EEEEEEECCCEEEHHHHHHHHC
T ss_pred             eEEEEEECCCCCEehhhhcccC
Confidence            6899999999999998876543

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.5e-15  Score=139.16  Aligned_cols=92  Identities=28%  Similarity=0.486  Sum_probs=76.7

Q ss_pred             HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..++|++.+.||+|+||.||+|++  .|+.||||+++...  ..+.|.+|++++++++|||||++++++.    +.....
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~----~~~~~~   76 (262)
T d1byga_           5 NMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIV----EEKGGL   76 (262)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEEC----CC--CC
T ss_pred             CHHHeEEeEEEecCCCeEEEEEEE--CCeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEE----ecCCcE
Confidence            456788999999999999999999  57899999996533  4577999999999999999999999874    234667


Q ss_pred             eeeecccccCCchhhhhccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~  145 (628)
                      |+||||+++|++.+++.+..
T Consensus        77 ~lv~ey~~~g~L~~~l~~~~   96 (262)
T d1byga_          77 YIVTEYMAKGSLVDYLRSRG   96 (262)
T ss_dssp             EEEECCCTTEEHHHHHHHHH
T ss_pred             EEEEeccCCCCHHHHHHhcC
Confidence            99999999999999997543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.45  E-value=1.8e-15  Score=136.95  Aligned_cols=144  Identities=22%  Similarity=0.236  Sum_probs=98.8

Q ss_pred             cccEEEccCC--ccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEE
Q 042887          163 KLEMIDVGDN--QLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIIS  240 (628)
Q Consensus       163 ~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~  240 (628)
                      ..+.++++++  .+. .++.++..+++|++|+|++|+|+.+ + .+..+++|++|+|++|.|+ .+|..+..+++|++|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccc
Confidence            3455666654  232 4567788888888888888888743 3 5788888888888888887 4555555566788888


Q ss_pred             eecccCcccCChhhhhCCCCCcEEecccCccccccc-ccccCCCCCCEEEcccccceeecccc----------cccCCCC
Q 042887          241 LHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLP-HSFSNASNLQVLDVYKNHFSGQVKID----------FNRLSNL  309 (628)
Q Consensus       241 L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~----------~~~l~~L  309 (628)
                      +++|.++ .++. +. .+++|+.|++++|+++.... ..++.+++|+.|++++|.+....+..          +..+++|
T Consensus       100 l~~N~i~-~l~~-~~-~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L  176 (198)
T d1m9la_         100 ISYNQIA-SLSG-IE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             CSEEECC-CHHH-HH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSC
T ss_pred             ccccccc-cccc-cc-ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCc
Confidence            8888887 4432 32 47788888888888875432 45777888888888888775443322          3445666


Q ss_pred             CEEE
Q 042887          310 SRLF  313 (628)
Q Consensus       310 ~~L~  313 (628)
                      +.||
T Consensus       177 ~~LD  180 (198)
T d1m9la_         177 KKLD  180 (198)
T ss_dssp             CEES
T ss_pred             CEeC
Confidence            6655

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-14  Score=137.92  Aligned_cols=95  Identities=25%  Similarity=0.442  Sum_probs=79.1

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      +|....++|++.+.||+|+||.||+|++.. ++.||||+++.... ..+.|.+|+.+|++++|||||++++++.      
T Consensus        11 ~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~-~~~vAiK~l~~~~~-~~~~~~~E~~~l~~l~h~nIv~~~g~~~------   82 (285)
T d1fmka3          11 AWEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS------   82 (285)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC------
T ss_pred             ceEcCHHHEEEeeEEeeCCCeEEEEEEECC-CCEEEEEEECcccC-CHHHHHHHHHHHHhcccCCEeEEEEEEe------
Confidence            334446789999999999999999999964 46799999975433 3477999999999999999999999864      


Q ss_pred             cceeeeeecccccCCchhhhhcc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~  144 (628)
                      .+..++|||||++|++..++...
T Consensus        83 ~~~~~lv~Ey~~~g~l~~~~~~~  105 (285)
T d1fmka3          83 EEPIYIVTEYMSKGSLLDFLKGE  105 (285)
T ss_dssp             SSSCEEEECCCTTCBHHHHHSHH
T ss_pred             cCCeEEEEEecCCCchhhhhhhc
Confidence            34578999999999998887654

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.9e-14  Score=137.47  Aligned_cols=97  Identities=25%  Similarity=0.434  Sum_probs=77.0

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||||+++...  ....+.+.+|+.+|++++|||||++++++.     +....
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~-----~~~~~   76 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIH-----TENKL   76 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccc-----cccce
Confidence            68999999999999999999999999999999996543  234578999999999999999999999954     47889


Q ss_pred             eeeecccccCCchhhhhccccccc
Q 042887          126 ALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      |+|||||.++.+..........++
T Consensus        77 ~iv~e~~~~~~~~~~~~~~~~~l~  100 (298)
T d1gz8a_          77 YLVFEFLHQDLKKFMDASALTGIP  100 (298)
T ss_dssp             EEEEECCSEEHHHHHHHTTTTCCC
T ss_pred             eEEEeecCCchhhhhhhhcccCCC
Confidence            999999987644433333333333

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.1e-14  Score=137.25  Aligned_cols=93  Identities=29%  Similarity=0.539  Sum_probs=77.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcE--EEEEEeecc-ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTT--VAVKVMNLK-QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVD  123 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~--~avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~  123 (628)
                      ++|++.++||+|+||.||+|++..+|..  ||||.++.. .....+.|.+|+++|+++ +|||||++++++.+     .+
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~-----~~   84 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-----RG   84 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE-----TT
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEec-----CC
Confidence            5788999999999999999999888764  677887543 344567899999999999 69999999999754     78


Q ss_pred             eeeeeecccccCCchhhhhccc
Q 042887          124 FKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ..|+|||||++|+|.+++....
T Consensus        85 ~~~iV~ey~~~g~L~~~l~~~~  106 (309)
T d1fvra_          85 YLYLAIEYAPHGNLLDFLRKSR  106 (309)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTC
T ss_pred             eeEEEEEecCCCcHHHHHhhcc
Confidence            8999999999999999997653

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.3e-14  Score=139.63  Aligned_cols=102  Identities=21%  Similarity=0.417  Sum_probs=82.1

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCCc-----EEEEEEeecc-ccchhhhHHHHHHHHhhc-CCCCcccccceee
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGT-----TVAVKVMNLK-QKGAAKSFVTECEALSNV-RHRNLIKIITVCS  115 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~-----~~avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~  115 (628)
                      |+.++++|++.+.||+|+||.||+|++..+++     .||+|.+... .......+.+|+.+|.++ +|||||++++++.
T Consensus        32 wei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~  111 (325)
T d1rjba_          32 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT  111 (325)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEe
Confidence            44566789999999999999999999865543     6999998654 334556799999999998 7999999999954


Q ss_pred             eccccccceeeeeecccccCCchhhhhccccccc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                           .....|+|||||++|+|.+++........
T Consensus       112 -----~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~  140 (325)
T d1rjba_         112 -----LSGPIYLIFEYCCYGDLLNYLRSKREKFS  140 (325)
T ss_dssp             -----SSSSCEEEEECCTTCBHHHHHHTTTTCC-
T ss_pred             -----eCCeEEEEEEcCCCCcHHHHHHhccCCCc
Confidence                 47789999999999999999987765443

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.3e-14  Score=137.25  Aligned_cols=98  Identities=20%  Similarity=0.302  Sum_probs=79.9

Q ss_pred             HHhCCCCcCceeecCCceeEEEEEECCCC---cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887           45 KATNNFSASNMIGQGSFGFVYKGKLGETG---TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~---~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      ..+++|++.+.||+|+||.||+|++..++   ..||||.++... ....+.|.+|+.+|++++|||||++++++.     
T Consensus         4 i~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-----   78 (273)
T d1mp8a_           4 IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-----   78 (273)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-----
T ss_pred             cCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-----
Confidence            44678999999999999999999986543   458899886543 344567999999999999999999999863     


Q ss_pred             ccceeeeeecccccCCchhhhhcccccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                       .+..|+|||||++|++.+++......+
T Consensus        79 -~~~~~iv~E~~~~g~l~~~~~~~~~~l  105 (273)
T d1mp8a_          79 -ENPVWIIMELCTLGELRSFLQVRKYSL  105 (273)
T ss_dssp             -SSSCEEEEECCTTEEHHHHHHHTTTTS
T ss_pred             -cCeEEEEEEeccCCcHHhhhhccCCCC
Confidence             356899999999999999876655443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-13  Score=118.89  Aligned_cols=107  Identities=16%  Similarity=0.097  Sum_probs=86.4

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecccC-cCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887          163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISAN-MLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL  241 (628)
Q Consensus       163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L  241 (628)
                      ..+.++.+++++. ..|..+..+++|++|++++| .++.+.+++|.++++|+.|+|++|+|+.+.|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456788888877 45677888888999999765 488777788888999999999999988777888888899999999


Q ss_pred             ecccCcccCChhhhhCCCCCcEEecccCccc
Q 042887          242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFT  272 (628)
Q Consensus       242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~  272 (628)
                      ++|+++ .+|..++. ..+|+.|+|++|.+.
T Consensus        88 s~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             cCCCCc-ccChhhhc-cccccccccCCCccc
Confidence            999988 78877775 446888888888775

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=6.8e-14  Score=138.38  Aligned_cols=93  Identities=23%  Similarity=0.303  Sum_probs=81.4

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      ++|++.+.||+|+||.||+|+++.+|+.||||++++..   ....+.+.+|+.+|+.++|||||++++++     .....
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~-----~~~~~  115 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSF-----KDNSN  115 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----ECSSE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccc-----ccccc
Confidence            57999999999999999999999999999999997532   33456789999999999999999999985     45788


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .++||||+.+|++.+++.+..
T Consensus       116 ~~~v~e~~~~g~l~~~l~~~~  136 (350)
T d1rdqe_         116 LYMVMEYVAGGEMFSHLRRIG  136 (350)
T ss_dssp             EEEEEECCTTCBHHHHHHHHC
T ss_pred             cccccccccccchhhhHhhcC
Confidence            999999999999999886543

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=4.5e-14  Score=137.19  Aligned_cols=101  Identities=26%  Similarity=0.456  Sum_probs=84.8

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccce
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITV  113 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~  113 (628)
                      +.+++.++++|++.+.||+|+||.||+|+++     .+++.||||+++... ....++|.+|+++|++++||||++++++
T Consensus         5 ~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~   84 (301)
T d1lufa_           5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGV   84 (301)
T ss_dssp             HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             hhhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceee
Confidence            3345556789999999999999999999975     345789999997643 3345679999999999999999999999


Q ss_pred             eeeccccccceeeeeecccccCCchhhhhccc
Q 042887          114 CSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       114 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +.     .....+++|||+++|+|.+++....
T Consensus        85 ~~-----~~~~~~~v~e~~~~g~L~~~l~~~~  111 (301)
T d1lufa_          85 CA-----VGKPMCLLFEYMAYGDLNEFLRSMS  111 (301)
T ss_dssp             EC-----SSSSCEEEEECCTTCBHHHHHHHTC
T ss_pred             ec-----cCCceEEEEEecCCCcHHHHHHhcC
Confidence            64     4678899999999999999997654

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.6e-14  Score=138.45  Aligned_cols=100  Identities=23%  Similarity=0.379  Sum_probs=83.7

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVC  114 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~  114 (628)
                      .|....++|++.+.||+|+||.||+|++.     .+++.||||+++... ......|.+|+.+++++ +|||||++++++
T Consensus        17 ~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~   96 (311)
T d1t46a_          17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGAC   96 (311)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEE
Confidence            35556789999999999999999999863     456789999997643 34456799999999999 699999999996


Q ss_pred             eeccccccceeeeeecccccCCchhhhhcccc
Q 042887          115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSND  146 (628)
Q Consensus       115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~  146 (628)
                      .     +.+..++|||||++|++.+++.....
T Consensus        97 ~-----~~~~~~lvmE~~~~g~l~~~l~~~~~  123 (311)
T d1t46a_          97 T-----IGGPTLVITEYCCYGDLLNFLRRKRD  123 (311)
T ss_dssp             C-----SSSSCEEEEECCTTEEHHHHHHHTTT
T ss_pred             e-----eCCEEEEEEEcCCCCCHHHHHHhccc
Confidence            5     46788999999999999999976654

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=9e-14  Score=132.95  Aligned_cols=86  Identities=22%  Similarity=0.461  Sum_probs=69.9

Q ss_pred             ceeecCCceeEEEEEEC--CCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeee
Q 042887           54 NMIGQGSFGFVYKGKLG--ETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIY  129 (628)
Q Consensus        54 ~~iG~G~~g~V~~~~~~--~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  129 (628)
                      +.||+|+||.||+|.+.  .+++.||||+++..  +....+.|.+|+++|++++|||||+++++|.      .+..++||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~------~~~~~lvm   86 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE------AESWMLVM   86 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE------SSSEEEEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEec------cCCEEEEE
Confidence            46999999999999874  34578999999653  2334567999999999999999999999864      24568999


Q ss_pred             cccccCCchhhhhccc
Q 042887          130 EYMKCGSSEDWMHQSN  145 (628)
Q Consensus       130 e~~~~g~L~~~l~~~~  145 (628)
                      |||++|+|.+++.+..
T Consensus        87 E~~~~g~L~~~l~~~~  102 (277)
T d1xbba_          87 EMAELGPLNKYLQQNR  102 (277)
T ss_dssp             ECCTTEEHHHHHHHCT
T ss_pred             EcCCCCcHHHHHhhcc
Confidence            9999999999987543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=7.5e-14  Score=138.84  Aligned_cols=94  Identities=24%  Similarity=0.342  Sum_probs=76.9

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHH---HHHHhhcCCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTE---CEALSNVRHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E---~~~l~~l~h~nIv~l~~~~~~~~~~  120 (628)
                      .++|++.+.||+|+||.||+|++..+|+.||||++.+..   ......+.+|   +.+++.++|||||++++++     +
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~-----~   77 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF-----H   77 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEE-----E
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEE-----E
Confidence            468999999999999999999999999999999997532   1222334444   5667777899999999994     4


Q ss_pred             ccceeeeeecccccCCchhhhhccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +....|+|||||++|+|.+++.+..
T Consensus        78 ~~~~~~ivmE~~~gg~L~~~l~~~~  102 (364)
T d1omwa3          78 TPDKLSFILDLMNGGDLHYHLSQHG  102 (364)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHHC
T ss_pred             ECCEEEEEEEecCCCcHHHHHHhcc
Confidence            5788999999999999999987643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=5.1e-15  Score=133.92  Aligned_cols=130  Identities=25%  Similarity=0.288  Sum_probs=75.0

Q ss_pred             cCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCcc
Q 042887          426 IPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVT  505 (628)
Q Consensus       426 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  505 (628)
                      ++..+..+++|++|++++|+|+. ++ .+.++++|    +.|++++|+|+ .++..+..+++|++|++++|+++..  ..
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L----~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~  110 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL----RILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SG  110 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTC----CEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccc----cChhhcccccc-ccccccccccccccccccccccccc--cc
Confidence            34455566666666666666652 22 34444444    56666666665 3344444455666777777766632  23


Q ss_pred             ccCCCCCCeEECcCceeeeecC-ccccCCCCCCEEECCCCcccccCch----------hhhcccCCCeEe
Q 042887          506 LSACTTLEYLHLQGNSFSGSLP-LSLKTLKSIKELDLSRNNLSGQIPK----------YLENLLFLAYLN  564 (628)
Q Consensus       506 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~  564 (628)
                      +..+++|+.|++++|+|+.... ..+..+++|+.|++++|++....+.          .+..+++|+.||
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            5566667777777776663221 3466677777777777766543322          255677777766

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-13  Score=135.09  Aligned_cols=93  Identities=15%  Similarity=0.250  Sum_probs=76.8

Q ss_pred             hCCCCcCc-eeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccce
Q 042887           47 TNNFSASN-MIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~-~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+ .||+|+||.||+|++..+|+.||||+++.     ...+.+|+.++.++ +|||||++++++.+. ......
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~-~~~~~~   83 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC   83 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeec-ccCCCE
Confidence            46898864 69999999999999999999999999864     24577899987665 799999999986531 223567


Q ss_pred             eeeeecccccCCchhhhhccc
Q 042887          125 KALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      .|+|||||+||+|.+++.+..
T Consensus        84 ~~ivmEy~~gg~L~~~i~~~~  104 (335)
T d2ozaa1          84 LLIVMECLDGGELFSRIQDRG  104 (335)
T ss_dssp             EEEEEECCCSEEHHHHHHSCS
T ss_pred             EEEEEECCCCCcHHHHHHhcC
Confidence            899999999999999997653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.8e-13  Score=114.57  Aligned_cols=106  Identities=20%  Similarity=0.110  Sum_probs=90.6

Q ss_pred             ceEEcCCCcCccccchhhhccCCCCEeeCcCC-cCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCC
Q 042887          465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSEN-HFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSR  543 (628)
Q Consensus       465 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  543 (628)
                      +.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+...+.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            56788888887 46777888999999999766 48877778899999999999999999988888899999999999999


Q ss_pred             CcccccCchhhhcccCCCeEeccCCcCcc
Q 042887          544 NNLSGQIPKYLENLLFLAYLNLSYNHFEG  572 (628)
Q Consensus       544 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  572 (628)
                      |+|+...++.|..+ .|+.|+|++|+|..
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~~C  117 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPLHC  117 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred             CCCcccChhhhccc-cccccccCCCcccC
Confidence            99997666667655 69999999999864

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.4e-13  Score=132.17  Aligned_cols=96  Identities=26%  Similarity=0.476  Sum_probs=78.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCC----cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETG----TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~----~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      +.|+..++||+|+||.||+|.+..++    ..||||+++... ......|.+|+.+|++++|||||++++++.     ..
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~-----~~   81 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVIS-----KY   81 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SS
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEe-----cC
Confidence            56888899999999999999987554    469999997543 334567999999999999999999999964     36


Q ss_pred             ceeeeeecccccCCchhhhhcccccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      ...++|||||.+|++.+++.......
T Consensus        82 ~~~~~v~e~~~~~~l~~~~~~~~~~~  107 (283)
T d1mqba_          82 KPMMIITEYMENGALDKFLREKDGEF  107 (283)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHTTTCS
T ss_pred             CceEEEEEecccCcchhhhhcccccc
Confidence            78899999999999998877655444

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.3e-14  Score=137.01  Aligned_cols=99  Identities=24%  Similarity=0.404  Sum_probs=82.4

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceee
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCS  115 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~  115 (628)
                      +|....++|++.+.||+|+||.||+|.+..     +++.||||+++... ......|.+|+.++++++|||||++++++.
T Consensus        14 ~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~   93 (308)
T d1p4oa_          14 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS   93 (308)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred             ceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEe
Confidence            345556789999999999999999999842     35789999997543 344567999999999999999999999964


Q ss_pred             eccccccceeeeeecccccCCchhhhhccc
Q 042887          116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                           .....++|||||++|++.+++....
T Consensus        94 -----~~~~~~lv~e~~~~g~l~~~~~~~~  118 (308)
T d1p4oa_          94 -----QGQPTLVIMELMTRGDLKSYLRSLR  118 (308)
T ss_dssp             -----SSSSCEEEEECCTTCBHHHHHHHHH
T ss_pred             -----cCCceeEEEeecCCCCHHHHHHhcc
Confidence                 3678899999999999999987654

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.8e-13  Score=132.93  Aligned_cols=86  Identities=22%  Similarity=0.409  Sum_probs=69.8

Q ss_pred             cCceeecCCceeEEEEEECCCCcEEEEEEeecccc-----chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887           52 ASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-----GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        52 ~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ..+.||+|+||+||+|++..+|+.||||+++....     ...+.+.+|+.+|++++|||||++++++     ...+..|
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~-----~~~~~~~   76 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAF-----GHKSNIS   76 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEE-----CCTTCCE
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeee-----ccCCcee
Confidence            35789999999999999999999999999965422     2346789999999999999999999995     4578899


Q ss_pred             eeecccccCCchhhhh
Q 042887          127 LIYEYMKCGSSEDWMH  142 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~  142 (628)
                      +|||||.++++.....
T Consensus        77 ivmE~~~~~~~~~~~~   92 (299)
T d1ua2a_          77 LVFDFMETDLEVIIKD   92 (299)
T ss_dssp             EEEECCSEEHHHHHTT
T ss_pred             ehhhhhcchHHhhhhh
Confidence            9999999887665543

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.3e-13  Score=131.91  Aligned_cols=96  Identities=25%  Similarity=0.475  Sum_probs=76.3

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCc----EEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGT----TVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV  122 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~----~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  122 (628)
                      ++|++.+.||+|+||.||+|.+..+|+    .||+|.++.. .....+.|.+|+.+|++++|||||+++++|.+      
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~------   82 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT------   82 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEES------
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------
Confidence            469999999999999999999987776    4788887643 33456789999999999999999999999753      


Q ss_pred             ceeeeeecccccCCchhhhhccccccc
Q 042887          123 DFKALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      ...++++||+.+|++.+++......++
T Consensus        83 ~~~~~v~e~~~~~~l~~~~~~~~~~~~  109 (317)
T d1xkka_          83 STVQLITQLMPFGCLLDYVREHKDNIG  109 (317)
T ss_dssp             SSEEEEEECCTTCBHHHHHHHTSSSCC
T ss_pred             CCeeEEEEeccCCcccccccccccCCC
Confidence            456889999999999998876655443

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.34  E-value=5.5e-13  Score=131.31  Aligned_cols=89  Identities=18%  Similarity=0.306  Sum_probs=76.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      .++|++.+.||+|+||+||+|++..+|+.||||+++...   .+++.+|+++|+++. ||||+++++++..   ......
T Consensus        34 ~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~---~~~~~~  107 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKD---PVSRTP  107 (328)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEEC---TTTCSE
T ss_pred             CcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEe---cCCCce
Confidence            357999999999999999999999999999999987543   467889999999995 9999999998653   345678


Q ss_pred             eeeecccccCCchhhh
Q 042887          126 ALIYEYMKCGSSEDWM  141 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l  141 (628)
                      ++|||||.+|++.++.
T Consensus       108 ~~v~e~~~~~~L~~~~  123 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLY  123 (328)
T ss_dssp             EEEEECCCSCBGGGTT
T ss_pred             eEEEeecCCCcHHHHh
Confidence            9999999999987764

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.1e-13  Score=129.81  Aligned_cols=92  Identities=26%  Similarity=0.519  Sum_probs=75.0

Q ss_pred             CceeecCCceeEEEEEECCCC---cEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887           53 SNMIGQGSFGFVYKGKLGETG---TTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI  128 (628)
Q Consensus        53 ~~~iG~G~~g~V~~~~~~~~~---~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  128 (628)
                      .++||+|+||+||+|++..++   ..||||.++.. .....++|.+|+++|++++|||||++++++.+    .....++|
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~----~~~~~~lv  107 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SEGSPLVV  107 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEE----TTTEEEEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEe----cCCceEEE
Confidence            578999999999999986643   25899999753 44556789999999999999999999998753    34678999


Q ss_pred             ecccccCCchhhhhcccccc
Q 042887          129 YEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       129 ~e~~~~g~L~~~l~~~~~~~  148 (628)
                      ||||++|++.+++.......
T Consensus       108 ~E~~~~g~l~~~~~~~~~~~  127 (311)
T d1r0pa_         108 LPYMKHGDLRNFIRNETHNP  127 (311)
T ss_dssp             EECCTTCBHHHHHHCTTCCC
T ss_pred             EEEeecCchhhhhccccccc
Confidence            99999999999987655443

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.5e-13  Score=133.98  Aligned_cols=97  Identities=19%  Similarity=0.191  Sum_probs=79.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF  124 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  124 (628)
                      .++|++.+.||+|+||+||+|++..+|+.||||+++...  ....+++.+|+++|++++|||||++++++..........
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            467999999999999999999999999999999997543  334567899999999999999999999875422223345


Q ss_pred             eeeeecccccCCchhhhhc
Q 042887          125 KALIYEYMKCGSSEDWMHQ  143 (628)
Q Consensus       125 ~~lv~e~~~~g~L~~~l~~  143 (628)
                      .+++|+|+.+|+|.+++..
T Consensus        97 ~~~i~~~~~gg~L~~~~~~  115 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKC  115 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTT
T ss_pred             eEEEEEeecCCchhhhccc
Confidence            5667788889999998854

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.2e-13  Score=129.30  Aligned_cols=92  Identities=24%  Similarity=0.410  Sum_probs=80.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||+||+|++..+|+.||||+++...  .....++.+|+.+|+.++|||||++++++.     .....
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~-----~~~~~   76 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH-----SDKKL   76 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccc-----cccce
Confidence            57999999999999999999999999999999997543  345678999999999999999999999954     47788


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++++|++.++++..+....
T Consensus        77 ~iv~~~~~~~~l~~~~~~~   95 (292)
T d1unla_          77 TLVFEFCDQDLKKYFDSCN   95 (292)
T ss_dssp             EEEEECCSEEHHHHHHHTT
T ss_pred             eEEeeeccccccccccccc
Confidence            9999999999888776543

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.3e-13  Score=129.78  Aligned_cols=96  Identities=28%  Similarity=0.459  Sum_probs=71.2

Q ss_pred             CCCCcCceeecCCceeEEEEEECCC-C--cEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGET-G--TTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG  121 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~-~--~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  121 (628)
                      ++|++.+.||+|+||.||+|++... +  ..||||+++..   .....+.|.+|+.+|++++|||||++++++.      
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~------   81 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVL------   81 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEEC------
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe------
Confidence            5699999999999999999987533 3  36899998654   2344578999999999999999999999864      


Q ss_pred             cceeeeeecccccCCchhhhhccccccc
Q 042887          122 VDFKALIYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      ....++|||||++|++.+++....+.++
T Consensus        82 ~~~~~lv~e~~~~~~l~~~~~~~~~~l~  109 (273)
T d1u46a_          82 TPPMKMVTELAPLGSLLDRLRKHQGHFL  109 (273)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHHGGGSC
T ss_pred             ecchheeeeeecCcchhhhhhcccCCCC
Confidence            2456899999999999988876554443

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.9e-13  Score=133.01  Aligned_cols=93  Identities=20%  Similarity=0.249  Sum_probs=75.4

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeee-ccccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSS-IDFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-~~~~~~~  123 (628)
                      .++|++.+.||+|+||+||+|++..+|+.||||++....  .....++.+|+.++++++|||||++++++.. ...+...
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~   95 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ   95 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCc
Confidence            367999999999999999999999999999999997542  3445678999999999999999999999754 2223557


Q ss_pred             eeeeeecccccCCchh
Q 042887          124 FKALIYEYMKCGSSED  139 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~  139 (628)
                      ..|+|||||.++.+..
T Consensus        96 ~~~iv~Ey~~~~l~~~  111 (355)
T d2b1pa1          96 DVYLVMELMDANLCQV  111 (355)
T ss_dssp             EEEEEEECCSEEHHHH
T ss_pred             eeEEEEeccchHHHHh
Confidence            8999999998765543

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.8e-13  Score=132.76  Aligned_cols=95  Identities=23%  Similarity=0.307  Sum_probs=71.7

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVD  123 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~  123 (628)
                      .+.|++.+.||+|+||.||+|++..+|+.||||+++..  .....+.+.+|+++|++++|||||++++++... ......
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            46799999999999999999999999999999999754  234456789999999999999999999997642 122345


Q ss_pred             eeeeeecccccCCchhhhh
Q 042887          124 FKALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       124 ~~~lv~e~~~~g~L~~~l~  142 (628)
                      .+|+||||| ++++..+++
T Consensus        97 ~~~lv~e~~-~~~l~~~~~  114 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMK  114 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHH
T ss_pred             eEEEEEecc-cccHHHHHH
Confidence            679999999 456666654

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.32  E-value=5.6e-13  Score=128.47  Aligned_cols=89  Identities=24%  Similarity=0.426  Sum_probs=76.0

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|++.+.||+|+||.||+|+++ +|+.||||+++...  ....+++.+|+.+|++++|||||++++++.     .....
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~~   75 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-----TKKRL   75 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEE-----CSSCE
T ss_pred             CCceeccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecc-----cCCce
Confidence            68999999999999999999995 78999999996643  334578999999999999999999999954     47889


Q ss_pred             eeeecccccCCchhhhh
Q 042887          126 ALIYEYMKCGSSEDWMH  142 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~  142 (628)
                      +++|||+.++.+..+..
T Consensus        76 ~i~~e~~~~~~~~~~~~   92 (286)
T d1ob3a_          76 VLVFEHLDQDLKKLLDV   92 (286)
T ss_dssp             EEEEECCSEEHHHHHHT
T ss_pred             eEEEEeehhhhHHHHHh
Confidence            99999999876665544

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.3e-13  Score=131.93  Aligned_cols=98  Identities=20%  Similarity=0.389  Sum_probs=76.2

Q ss_pred             HHHHhCCCCcCceeecCCceeEEEEEECCCC-------cEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccce
Q 042887           43 LSKATNNFSASNMIGQGSFGFVYKGKLGETG-------TTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITV  113 (628)
Q Consensus        43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~-------~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~  113 (628)
                      |....++|++.+.||+|+||.||+|++..++       ..||||+++... ......+.+|+..+.++ +|||||+++++
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~   87 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGA   87 (299)
T ss_dssp             TBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             CcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccc
Confidence            4455678999999999999999999975544       369999997653 34457789999999888 79999999999


Q ss_pred             eeeccccccceeeeeecccccCCchhhhhccc
Q 042887          114 CSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       114 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      +.     +.+..++|||||++|++.+++....
T Consensus        88 ~~-----~~~~~~~v~e~~~~g~l~~~i~~~~  114 (299)
T d1fgka_          88 CT-----QDGPLYVIVEYASKGNLREYLQARR  114 (299)
T ss_dssp             EC-----SSSSCEEEECCCTTCBHHHHHHTTS
T ss_pred             cc-----cCCeEEEEEEccCCCcHHHHHHhhc
Confidence            65     3678999999999999999997654

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5e-13  Score=127.61  Aligned_cols=92  Identities=21%  Similarity=0.293  Sum_probs=76.6

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcC--CCCcccccceeeeccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVR--HRNLIKIITVCSSIDF  119 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~--h~nIv~l~~~~~~~~~  119 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||||+++....      ....++.+|+.+|++++  |||||++++++     
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~-----   78 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWF-----   78 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEE-----
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEE-----
Confidence            579999999999999999999999999999999975421      22345789999999996  89999999994     


Q ss_pred             cccceeeeeeccccc-CCchhhhhcc
Q 042887          120 KGVDFKALIYEYMKC-GSSEDWMHQS  144 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~-g~L~~~l~~~  144 (628)
                      ++....|+||||+.+ +++.+++...
T Consensus        79 ~~~~~~~lv~e~~~~~~~l~~~~~~~  104 (273)
T d1xwsa_          79 ERPDSFVLILERPEPVQDLFDFITER  104 (273)
T ss_dssp             ECSSEEEEEEECCSSEEEHHHHHHHH
T ss_pred             eeCCeEEEEEEeccCcchHHHHHhcc
Confidence            457889999999976 5677776543

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-12  Score=129.74  Aligned_cols=97  Identities=16%  Similarity=0.217  Sum_probs=75.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ..+|++.+.||+|+||+||+|++..+|+.||||+++... ....+++.+|+.+|++++||||+++++++....+......
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            356999999999999999999999999999999997543 3445678999999999999999999999765333333444


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      ++ ++|+.+|+|.+++...
T Consensus        87 ~l-~~~~~~g~L~~~l~~~  104 (345)
T d1pmea_          87 YL-VTHLMGADLYKLLKTQ  104 (345)
T ss_dssp             EE-EEECCCEEHHHHHHHC
T ss_pred             EE-EEeecCCchhhhhhcC
Confidence            55 4567789999998643

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-12  Score=127.13  Aligned_cols=91  Identities=27%  Similarity=0.456  Sum_probs=71.5

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHH--HHhhcCCCCcccccceeeecccccccee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECE--ALSNVRHRNLIKIITVCSSIDFKGVDFK  125 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~--~l~~l~h~nIv~l~~~~~~~~~~~~~~~  125 (628)
                      ++|.+.+.||+|+||.||+|++  +|+.||||+++...   .+++.+|.+  .+..++|||||++++++.+.+ ......
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~-~~~~~~   76 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQL   76 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE--TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccc---hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCC-CcceEE
Confidence            4677889999999999999998  78999999986543   234444544  456778999999999987521 123468


Q ss_pred             eeeecccccCCchhhhhcc
Q 042887          126 ALIYEYMKCGSSEDWMHQS  144 (628)
Q Consensus       126 ~lv~e~~~~g~L~~~l~~~  144 (628)
                      |+|||||++|+|.+++.+.
T Consensus        77 ~lv~Ey~~~g~L~~~l~~~   95 (303)
T d1vjya_          77 WLVSDYHEHGSLFDYLNRY   95 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHC
T ss_pred             EEEEecccCCCHHHHHhcC
Confidence            9999999999999999754

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-12  Score=127.11  Aligned_cols=102  Identities=20%  Similarity=0.356  Sum_probs=79.3

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCC-CcEEEEEEeeccc--cchhhhHHHHHHHHhhc---CCCCcccccceeeecccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGET-GTTVAVKVMNLKQ--KGAAKSFVTECEALSNV---RHRNLIKIITVCSSIDFK  120 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~-~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l---~h~nIv~l~~~~~~~~~~  120 (628)
                      .++|++.+.||+|+||.||+|++.++ ++.||||+++...  ......+.+|+.+|+.+   +||||+++++++.....+
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            36899999999999999999999765 6679999997542  33445678899888776   699999999998654455


Q ss_pred             ccceeeeeecccccCCchhhhhcccccc
Q 042887          121 GVDFKALIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      .....+++||||.+|.+...........
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~  113 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEPGV  113 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTTCS
T ss_pred             cCceEEEEEEeccCCchhhhhhccCCCC
Confidence            6678999999999887765544433333

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.4e-13  Score=129.80  Aligned_cols=93  Identities=23%  Similarity=0.334  Sum_probs=78.8

Q ss_pred             CCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcCC-CCcccccceeeeccc
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVRH-RNLIKIITVCSSIDF  119 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~h-~nIv~l~~~~~~~~~  119 (628)
                      ++|++.+.||+|+||.||+|++.   .+|+.||||++++..    ....+.+.+|+.+|++++| |||+++++++     
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~-----   98 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAF-----   98 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEE-----
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeee-----
Confidence            67999999999999999999974   468999999986532    2345678899999999976 8999999984     


Q ss_pred             cccceeeeeecccccCCchhhhhccc
Q 042887          120 KGVDFKALIYEYMKCGSSEDWMHQSN  145 (628)
Q Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~  145 (628)
                      ++....+++|||+.+|+|.+++....
T Consensus        99 ~~~~~~~~v~e~~~~~~L~~~i~~~~  124 (322)
T d1vzoa_          99 QTETKLHLILDYINGGELFTHLSQRE  124 (322)
T ss_dssp             EETTEEEEEECCCCSCBHHHHHHHHS
T ss_pred             ccCCceeeeeecccccHHHHHHHhcc
Confidence            44788999999999999999987554

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.6e-12  Score=127.34  Aligned_cols=94  Identities=22%  Similarity=0.427  Sum_probs=73.8

Q ss_pred             hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeecc---ccc
Q 042887           47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSID---FKG  121 (628)
Q Consensus        47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~---~~~  121 (628)
                      .++|++.+.||+|+||+||+|++..+|+.||||++...  ......++.+|+.+|++++||||+++++++....   ...
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            47899999999999999999999999999999998654  3345577899999999999999999999875411   223


Q ss_pred             cceeeeeecccccCCchhh
Q 042887          122 VDFKALIYEYMKCGSSEDW  140 (628)
Q Consensus       122 ~~~~~lv~e~~~~g~L~~~  140 (628)
                      ....|+|||||.++.+..+
T Consensus        89 ~~~~~iv~e~~~~~~~~~~  107 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLL  107 (318)
T ss_dssp             --CEEEEEECCCEEHHHHH
T ss_pred             CceEEEEEeccCCCccchh
Confidence            4568999999998766544

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.7e-12  Score=125.86  Aligned_cols=104  Identities=20%  Similarity=0.370  Sum_probs=81.3

Q ss_pred             HHHHHHHhCCCCcCceeecCCceeEEEEEECC-----CCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccc
Q 042887           40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGE-----TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIIT  112 (628)
Q Consensus        40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~-----~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~  112 (628)
                      ...|+.+.++|++.+.||+|+||.||+|++..     +++.||||+++... ....+.+.+|..++.++ +|+|||.+++
T Consensus         5 ~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~   84 (299)
T d1ywna1           5 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   84 (299)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeee
Confidence            34566667899999999999999999999754     34689999987543 34456788898888887 5899999998


Q ss_pred             eeeeccccccceeeeeecccccCCchhhhhccccc
Q 042887          113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK  147 (628)
Q Consensus       113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~  147 (628)
                      ++.    +.....++|||||++|+|.+++......
T Consensus        85 ~~~----~~~~~~~iv~E~~~~g~L~~~l~~~~~~  115 (299)
T d1ywna1          85 ACT----KPGGPLMVIVEFCKFGNLSTYLRSKRNE  115 (299)
T ss_dssp             EEC----STTSCCEEEEECCTTCBHHHHHHHTGGG
T ss_pred             eec----cCCCeEEEEEEecCCCcHHHHHHhcccc
Confidence            864    3456789999999999999999866543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.2e-12  Score=127.90  Aligned_cols=86  Identities=24%  Similarity=0.425  Sum_probs=70.3

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccceeee
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVDFKAL  127 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~~~~l  127 (628)
                      +|...++||+|+||+||+|++..+|+.||||++.....    ...+|+++|++++|||||++++++... ...+....|+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            58888999999999999999999999999999975432    234899999999999999999987642 2234556899


Q ss_pred             eecccccCCch
Q 042887          128 IYEYMKCGSSE  138 (628)
Q Consensus       128 v~e~~~~g~L~  138 (628)
                      |||||++|...
T Consensus        97 v~Ey~~~~~~~  107 (350)
T d1q5ka_          97 VLDYVPETVYR  107 (350)
T ss_dssp             EEECCSEEHHH
T ss_pred             EEeccCCccHH
Confidence            99999876443

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.16  E-value=1.5e-11  Score=118.35  Aligned_cols=93  Identities=18%  Similarity=0.264  Sum_probs=77.4

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCC-CCcccccceeeeccccccceee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRH-RNLIKIITVCSSIDFKGVDFKA  126 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h-~nIv~l~~~~~~~~~~~~~~~~  126 (628)
                      ++|++.+.||+|+||.||+|++..+|+.||||+++...  ..+.+.+|++.++.+.| +||+.+++++.     .....+
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~-----~~~~~~   77 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQ-----EGLHNV   77 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEE-----ETTEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEee-----cCCccE
Confidence            57999999999999999999999999999999886543  33567889999999975 89999988854     478889


Q ss_pred             eeecccccCCchhhhhcccccc
Q 042887          127 LIYEYMKCGSSEDWMHQSNDKL  148 (628)
Q Consensus       127 lv~e~~~~g~L~~~l~~~~~~~  148 (628)
                      +||||+ +|++.+++.......
T Consensus        78 ~vme~~-~~~l~~~~~~~~~~~   98 (293)
T d1csna_          78 LVIDLL-GPSLEDLLDLCGRKF   98 (293)
T ss_dssp             EEEECC-CCBHHHHHHHTTTCC
T ss_pred             EEEEec-CCCHHHHHHhhccch
Confidence            999998 688988887655444

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=3.1e-11  Score=116.80  Aligned_cols=95  Identities=25%  Similarity=0.367  Sum_probs=74.1

Q ss_pred             CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887           48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL  127 (628)
Q Consensus        48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l  127 (628)
                      ++|++.+.||+|+||+||+|++..+|+.||||++....  ..+++.+|+++++.++|+++|..+..+.    ......++
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~i~~~l~~~~~i~~~~~~~----~~~~~~~i   80 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDYNVM   80 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCT--TSCCHHHHHHHHHHSTTSTTCCCEEEEE----EETTEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhc--cCHHHHHHHHHHHHccCCCcccEEEEEE----ecCCEEEE
Confidence            56999999999999999999999999999999987543  2356889999999999887776655543    34678899


Q ss_pred             eecccccCCchhhhhccccccc
Q 042887          128 IYEYMKCGSSEDWMHQSNDKLE  149 (628)
Q Consensus       128 v~e~~~~g~L~~~l~~~~~~~~  149 (628)
                      ||||+. |++.+.+......++
T Consensus        81 vme~~~-~~l~~~~~~~~~~~~  101 (299)
T d1ckia_          81 VMELLG-PSLEDLFNFCSRKFS  101 (299)
T ss_dssp             EEECCC-CBHHHHHHHTTTCCC
T ss_pred             EEEEcC-CchhhhhhhccCCCc
Confidence            999995 566666554444443

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=9.9e-09  Score=101.77  Aligned_cols=85  Identities=19%  Similarity=0.260  Sum_probs=65.8

Q ss_pred             CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-----------CCCcccccceeeec
Q 042887           49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-----------HRNLIKIITVCSSI  117 (628)
Q Consensus        49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~nIv~l~~~~~~~  117 (628)
                      +|++.+.||+|+||+||+|++..+|+.||||+++.... ..+.+.+|+.+++.+.           |+||+++++++.. 
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~-~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~-   91 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV-YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH-   91 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH-HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE-
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc-chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee-
Confidence            49999999999999999999999999999999975432 3456788998888775           4678888887642 


Q ss_pred             cccccceeeeeecccccCCc
Q 042887          118 DFKGVDFKALIYEYMKCGSS  137 (628)
Q Consensus       118 ~~~~~~~~~lv~e~~~~g~L  137 (628)
                        +.....+++++++..+..
T Consensus        92 --~~~~~~~~~~~~~~~~~~  109 (362)
T d1q8ya_          92 --KGPNGVHVVMVFEVLGEN  109 (362)
T ss_dssp             --EETTEEEEEEEECCCCEE
T ss_pred             --ccccceeeeeeecccccc
Confidence              335566677777655543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.9e-10  Score=95.65  Aligned_cols=69  Identities=16%  Similarity=0.056  Sum_probs=31.4

Q ss_pred             cccccCCCCCCEeecccccCcccC--CcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCccc
Q 042887          203 PDSLCQLRSLNYLSISENNFSCKL--PLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFT  272 (628)
Q Consensus       203 ~~~~~~l~~L~~L~Ls~N~i~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~  272 (628)
                      +..+..+++|++|+|++|+|+...  +..+..+++|+.|+|++|.++ .++...+....+|+.|++++|.+.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            333445555555555555555321  222344555555555555554 333322222334444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.6e-09  Score=93.61  Aligned_cols=86  Identities=23%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             chhhhccCCCCEeeCcCCcCcccC--CccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCc-----
Q 042887          479 PLEVGNLRNLAEFDLSENHFSNEI--PVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIP-----  551 (628)
Q Consensus       479 ~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----  551 (628)
                      +..+..+++|++|+|++|+|+...  +..+..+++|+.|+|++|.|+...+..+....+|+.|++++|++.....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            334456777777777777776532  2345567777777777777774333333444567777777777765433     


Q ss_pred             --hhhhcccCCCeEe
Q 042887          552 --KYLENLLFLAYLN  564 (628)
Q Consensus       552 --~~~~~l~~L~~L~  564 (628)
                        ..+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              2245667777665

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.43  E-value=1e-07  Score=84.74  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=58.2

Q ss_pred             CCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------------------chhhhHHHHHHHHhhcCCCCccccc
Q 042887           50 FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------------------GAAKSFVTECEALSNVRHRNLIKII  111 (628)
Q Consensus        50 ~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------------------~~~~~~~~E~~~l~~l~h~nIv~l~  111 (628)
                      +.+.+.||+|+||.||+|++. +|+.||||+++....                  .....+.+|...+.++.|++++..+
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~-~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~   80 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVY   80 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET-TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred             chhCCEeeeCcceEEEEEECC-CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEE
Confidence            356789999999999999984 789999998753210                  0112345688889999999998877


Q ss_pred             ceeeeccccccceeeeeecccccCCch
Q 042887          112 TVCSSIDFKGVDFKALIYEYMKCGSSE  138 (628)
Q Consensus       112 ~~~~~~~~~~~~~~~lv~e~~~~g~L~  138 (628)
                      +..         ..+++|||++++...
T Consensus        81 ~~~---------~~~lvme~~~~~~~~   98 (191)
T d1zara2          81 AWE---------GNAVLMELIDAKELY   98 (191)
T ss_dssp             EEE---------TTEEEEECCCCEEGG
T ss_pred             Eec---------CCEEEEEeecccccc
Confidence            651         237999999876544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.98  E-value=2.6e-06  Score=73.26  Aligned_cols=88  Identities=13%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             CcCcccEEEccCC-ccccc----cchhhhCCCCCCEEecccCcCccccc----ccccCCCCCCEeecccccCcccC----
Q 042887          160 NLLKLEMIDVGDN-QLIGK----FPDFIANFSALEAIDISANMLGGRIP----DSLCQLRSLNYLSISENNFSCKL----  226 (628)
Q Consensus       160 ~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~i~~~~----  226 (628)
                      +.+.|+.|+|+++ .+...    +...+...++|++|+|++|.+.....    +.+...+.|++|+|++|.++...    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456778888764 45432    22345566677777777777653322    23344566777777777666422    


Q ss_pred             CcCccCCCCCCEEEeecccCc
Q 042887          227 PLSIWNISSLEIISLHSNRFE  247 (628)
Q Consensus       227 p~~~~~l~~L~~L~L~~n~l~  247 (628)
                      ..++...++|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            223445556666666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.88  E-value=5.3e-06  Score=71.26  Aligned_cols=70  Identities=11%  Similarity=0.072  Sum_probs=33.1

Q ss_pred             ccCCCCCCEEEcccccceeeccc----ccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcc
Q 042887          279 FSNASNLQVLDVYKNHFSGQVKI----DFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFG  350 (628)
Q Consensus       279 ~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  350 (628)
                      +...++|++|++++|.+......    .+...+.|++|++++|.++.....  .....+...++|+.|++++|.+.
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~--~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA--RLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH--HHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH--HHHHHHHhCCcCCEEECCCCcCC
Confidence            44445555555555555432222    223345566666666655432111  22334455555666666555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.35  E-value=5.4e-05  Score=64.66  Aligned_cols=89  Identities=21%  Similarity=0.294  Sum_probs=47.6

Q ss_pred             hhccCCCCEeeCcCCcCcccC----CccccCCCCCCeEECcCceeeee----cCccccCCCCCCEEEC--CCCcccc---
Q 042887          482 VGNLRNLAEFDLSENHFSNEI----PVTLSACTTLEYLHLQGNSFSGS----LPLSLKTLKSIKELDL--SRNNLSG---  548 (628)
Q Consensus       482 ~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~---  548 (628)
                      +...+.|++|++++|.++...    ...+...++++.+++++|.+...    +...+...++|+.++|  ++|.+..   
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            344556666666666654322    12233456666666666666432    2234455566765444  4555542   


Q ss_pred             -cCchhhhcccCCCeEeccCCcC
Q 042887          549 -QIPKYLENLLFLAYLNLSYNHF  570 (628)
Q Consensus       549 -~~~~~~~~l~~L~~L~ls~N~l  570 (628)
                       .+.+.+...+.|++|+++.+..
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCcCEEeCcCCCC
Confidence             2333455666777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.31  E-value=2.1e-05  Score=67.33  Aligned_cols=16  Identities=13%  Similarity=0.017  Sum_probs=7.3

Q ss_pred             CCCCCCEeecccccCc
Q 042887          208 QLRSLNYLSISENNFS  223 (628)
Q Consensus       208 ~l~~L~~L~Ls~N~i~  223 (628)
                      ..++|++|+|++|.++
T Consensus        44 ~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCCSCCEEECTTSCCC
T ss_pred             cCCccCeeeccCCccc
Confidence            4444444444444443

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.81  E-value=0.21  Score=44.73  Aligned_cols=93  Identities=13%  Similarity=0.071  Sum_probs=63.1

Q ss_pred             HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecccc
Q 042887           42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFK  120 (628)
Q Consensus        42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~  120 (628)
                      +.....+.|+..+..+.|+-+.||+...  +++.+.+|+...........+.+|..++..+. +--+.+++....     
T Consensus         8 ~l~~~~~~~~~~~~~~G~s~~~v~rv~~--~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~-----   80 (263)
T d1j7la_           8 ELKKLIEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER-----   80 (263)
T ss_dssp             HHHHHHTTSEEEECSCCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEE-----
T ss_pred             HHHHhhhceEEEEcCCCCCCCcEEEEEe--CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEe-----
Confidence            4455567787766555555578998764  56778888887655545566788988887774 323445555532     


Q ss_pred             ccceeeeeecccccCCchhhh
Q 042887          121 GVDFKALIYEYMKCGSSEDWM  141 (628)
Q Consensus       121 ~~~~~~lv~e~~~~g~L~~~l  141 (628)
                      ..+..++||++.+|..+.+..
T Consensus        81 ~~~~~~lv~~~l~G~~~~~~~  101 (263)
T d1j7la_          81 HDGWSNLLMSEADGVLCSEEY  101 (263)
T ss_dssp             ETTEEEEEEECCSSEEHHHHT
T ss_pred             cCCceEEEEEecccccccccc
Confidence            357789999999998775543