Citrus Sinensis ID: 042898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
CDCYNPTPPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAPPTELQTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIRQQDLSVLPNNW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHEHHHHcccEEEEEcccccccccHHHHHHHcHHHHHHHHHHHHHHHHcEEEccccHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
cdcynptppsqvskpppppptvkptpappvvkpppppapptelqtgpidalklgacvdvpgglihiglghnakekccpllqGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANirqqdlsvlpnnw
Flexible Loop (DISEMBL)
cdcynptppsqvskppppppTVKPTPAPPVVKPPPPPAPPTELQTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVanirqqdlsvlpnnw
Low Complexity Region (SEG)
CDCYNptppsqvskpppppptvkptpappvvkpppppapptELQTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIRQQDLSVLPNNW
Disordered region (IsUnstruct)
***********************************************IDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIRQ**********
Disordered Region (DISOPRED)
*DCYNPTPPSQVS*************************************LKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIRQQDLSVLPNN*
Disordered Region (DISEMBL)
****************************PVVKPPPPPAPPTELQTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIRQQDLSVLPNNW
Disordered Region (DISPRO)
CDCYNPTPPSQVSKPPPPPPTVKP*******************QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIRQQDLSVLPNNW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
CDCYNPTPPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAPPTELQTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIRQQDLSVLPNNW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q00451	346	36.4 kDa proline-rich pro	N/A	no	0.533	0.208	0.712	1e-15
Q01595	129	Cortical cell-delineating	N/A	no	0.503	0.527	0.555	5e-11
Q8RW93	128	Putative lipid-binding pr	no	no	0.696	0.734	0.368	2e-09
P14009	137	14 kDa proline-rich prote	N/A	no	0.525	0.518	0.458	1e-07

>sp|Q00451|PRF1_SOLLC 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 61/73 (83%), Gaps = 1/73 (1%)

Query: 45  TGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLI 104
           T PIDALKLGACVDV GGLIHIG+G +AK+ CCPLL GL DLDAAICLCT IR+  L  I
Sbjct: 260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLN-I 318

Query: 105 NLLVPISLQVLVS 117
           N+++PI+LQVL+ 
Sbjct: 319 NIILPIALQVLID 331

Solanum lycopersicum (taxid: 4081)

>sp|Q01595|CCDP_MAIZE Cortical cell-delineating protein OS=Zea mays PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 4/72 (5%)

Query: 47  PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINL 106
           PIDALKL  C  V G L+ +GL     E+CCPLL+GL DLDAA+CLCTAI+ N L  I+L
Sbjct: 49  PIDALKLKVCAKVLG-LVKVGLPQ--YEQCCPLLEGLVDLDAALCLCTAIKANVLG-IHL 104

Query: 107 LVPISLQVLVST 118
            VP+SL  +++ 
Sbjct: 105 NVPLSLNFILNN 116

Delineates a novel subset of developing cortical cells. It is probably involved in some aspect of transport of molecules to or from the vasculature.

Zea mays (taxid: 4577)

>sp|Q8RW93|LBP65_ARATH Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 31  VKPPPPPAPPTELQTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAI 90
           VKP PPP         P D LK G C    G L+   +G    ++CC L++GLAD +AA+
Sbjct: 31  VKPCPPPPAKQATTKCPRDTLKFGVCGSWLG-LVSEVIGTPPSQECCSLIKGLADFEAAV 89

Query: 91  CLCTAIRVNALKLINLLVPISLQVLVSTTVANIRQ 125
           CLCTA++ + L +  + +P++L +L+++   N+ Q
Sbjct: 90  CLCTALKTSILGVAPVKIPVALTLLLNSCGKNVPQ 124

Arabidopsis thaliana (taxid: 3702)

>sp|P14009|14KD_DAUCA 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 47  PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINL 106
           P DALKLG C DV   + ++ +G      CC LL+GL +L+AA+CLCTAI+ N L   NL
Sbjct: 55  PRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILG-KNL 113

Query: 107 LVPISLQVLVST 118
            +PI+L ++++ 
Sbjct: 114 NLPIALSLVLNN 125


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.139    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,886,593
Number of Sequences: 539616
Number of extensions: 3079290
Number of successful extensions: 112584
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2116
Number of HSP's successfully gapped in prelim test: 1233
Number of HSP's that attempted gapping in prelim test: 37941
Number of HSP's gapped (non-prelim): 38337
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

May be connected with the initiation of embryogenesis or with the metabolic changes produced by the removal of auxins.

Daucus carota (taxid: 4039)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
145332667	1480	bifunctional inhibitor/lipid transfer pr	0.562	0.051	0.602	1e-21
297835204	722	predicted protein [Arabidopsis lyrata su	0.562	0.105	0.612	3e-21
296087554	135	unnamed protein product [Vitis vinifera]	0.540	0.540	0.675	3e-20
359475712	310	PREDICTED: uncharacterized protein LOC10	0.540	0.235	0.675	4e-20
118486411	179	unknown [Populus trichocarpa]	0.533	0.402	0.671	2e-19
224104875	179	predicted protein [Populus trichocarpa]	0.533	0.402	0.671	2e-19
297804748	451	hypothetical protein ARALYDRAFT_493374 [	0.533	0.159	0.689	3e-19
224086363	85	predicted protein [Populus trichocarpa]	0.540	0.858	0.662	4e-19
255559090	299	Repetitive proline-rich cell wall protei	0.540	0.244	0.662	4e-19
449456667	254	PREDICTED: uncharacterized protein LOC10	0.540	0.287	0.648	1e-18

>gi|145332667|ref|NP_001078199.1| bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein [Arabidopsis thaliana] gi|11994733|dbj|BAB03062.1| unnamed protein product [Arabidopsis thaliana] gi|332643072|gb|AEE76593.1| bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein [Arabidopsis thaliana]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 65/78 (83%), Gaps = 2/78 (2%)

Query: 39   PPTEL-QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIR 97
            PPT + +T PID LKLG+CVD+ GGL+HIG+G +AKEKCCP+++GL DLDAA+CLCT I+
Sbjct: 1389 PPTTMPKTCPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLCTTIK 1448

Query: 98   VNALKLINLLVPISLQVL 115
               L  I++++PI+L+VL
Sbjct: 1449 AKLLN-IDVILPIALEVL 1465

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835204|ref|XP_002885484.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331324|gb|EFH61743.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 64/80 (80%), Gaps = 4/80 (5%)

Query: 39  PPTEL---QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTA 95
           PPT +   +T PID LKLG+CVDV GGL+HIG+G +AK+KCCP+L+GL DLDAA+CLCT 
Sbjct: 467 PPTSMPKPKTCPIDTLKLGSCVDVLGGLVHIGIGQSAKQKCCPVLEGLVDLDAAVCLCTT 526

Query: 96  IRVNALKLINLLVPISLQVL 115
           I+   L  I+L+ PI+L+VL
Sbjct: 527 IKAKLLN-IDLVFPIALEVL 545

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087554|emb|CBI34143.3| unnamed protein product [Vitis vinifera]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 63/74 (85%), Gaps = 1/74 (1%)

Query: 44  QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKL 103
           QT PID LKLGACVD+ GGL+HIG+G +AK+ CCP+LQGL DLDAA+CLCTAI+V  L  
Sbjct: 50  QTCPIDTLKLGACVDLLGGLVHIGIGSSAKDTCCPVLQGLVDLDAAVCLCTAIKVKLLN- 108

Query: 104 INLLVPISLQVLVS 117
           +N+++PI+LQVLV 
Sbjct: 109 VNIIIPIALQVLVG 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475712|ref|XP_003631735.1| PREDICTED: uncharacterized protein LOC100233114 [Vitis vinifera]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 63/74 (85%), Gaps = 1/74 (1%)

Query: 44  QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKL 103
           QT PID LKLGACVD+ GGL+HIG+G +AK+ CCP+LQGL DLDAA+CLCTAI+V  L  
Sbjct: 225 QTCPIDTLKLGACVDLLGGLVHIGIGSSAKDTCCPVLQGLVDLDAAVCLCTAIKVKLLN- 283

Query: 104 INLLVPISLQVLVS 117
           +N+++PI+LQVLV 
Sbjct: 284 VNIIIPIALQVLVG 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486411|gb|ABK95045.1| unknown [Populus trichocarpa]

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 62/73 (84%), Gaps = 1/73 (1%)

Query: 44  QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKL 103
           +T PID LKLGACVDV GGLIHIG+G +AK++CCPLL+GL DLDAA+CLCT I+   L  
Sbjct: 94  ETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN- 152

Query: 104 INLLVPISLQVLV 116
           INL++PI+L++LV
Sbjct: 153 INLILPIALELLV 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104875|ref|XP_002333889.1| predicted protein [Populus trichocarpa] gi|222838950|gb|EEE77301.1| predicted protein [Populus trichocarpa]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 62/73 (84%), Gaps = 1/73 (1%)

Query: 44  QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKL 103
           +T PID LKLGACVDV GGLIHIG+G +AK++CCPLL+GL DLDAA+CLCT I+   L  
Sbjct: 94  ETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN- 152

Query: 104 INLLVPISLQVLV 116
           INL++PI+L++LV
Sbjct: 153 INLILPIALELLV 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804748|ref|XP_002870258.1| hypothetical protein ARALYDRAFT_493374 [Arabidopsis lyrata subsp. lyrata] gi|297316094|gb|EFH46517.1| hypothetical protein ARALYDRAFT_493374 [Arabidopsis lyrata subsp. lyrata]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 62/74 (83%), Gaps = 2/74 (2%)

Query: 44  QTGPIDALKLGACVDVPGGLIHIGLGHN-AKEKCCPLLQGLADLDAAICLCTAIRVNALK 102
           +T PIDALKLGACVDV GGLIHIGLG + AK KCCPLL+GLA +DAA+CLCT IR   L 
Sbjct: 156 ETCPIDALKLGACVDVLGGLIHIGLGKSYAKAKCCPLLEGLASVDAAVCLCTTIRAKLLN 215

Query: 103 LINLLVPISLQVLV 116
            I+L++PI+L++LV
Sbjct: 216 -IDLIIPIALELLV 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086363|ref|XP_002307865.1| predicted protein [Populus trichocarpa] gi|222853841|gb|EEE91388.1| predicted protein [Populus trichocarpa]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 62/74 (83%), Gaps = 1/74 (1%)

Query: 44  QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKL 103
           +T PID LKLGACVDV GGLIHIG+G +AK++CCPLL+GL DLDAA+CLCT I+   L  
Sbjct: 2   ETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN- 60

Query: 104 INLLVPISLQVLVS 117
           INL++PI+L++LV 
Sbjct: 61  INLILPIALELLVD 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559090|ref|XP_002520567.1| Repetitive proline-rich cell wall protein 2 precursor, putative [Ricinus communis] gi|223540227|gb|EEF41800.1| Repetitive proline-rich cell wall protein 2 precursor, putative [Ricinus communis]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 44  QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKL 103
           +T PID LKLGACVDV GGLIHIG+G +AK+ CCP+LQGL DLDAA+CLCT I+   L L
Sbjct: 214 ETCPIDTLKLGACVDVLGGLIHIGIGSSAKDACCPVLQGLVDLDAALCLCTTIKAKLLNL 273

Query: 104 INLLVPISLQVLVS 117
            N+++PI+L+VLV 
Sbjct: 274 -NIIIPIALEVLVD 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456667|ref|XP_004146070.1| PREDICTED: uncharacterized protein LOC101218239 [Cucumis sativus]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 59/74 (79%), Gaps = 1/74 (1%)

Query: 44  QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKL 103
           +T PID LKLGACVD+ GGLIHIG+G   K+ CCP+L+GL DLDAA+CLCT I+   L  
Sbjct: 168 ETCPIDTLKLGACVDLLGGLIHIGIGDRTKQTCCPVLEGLVDLDAAVCLCTTIKAKLLN- 226

Query: 104 INLLVPISLQVLVS 117
           INL++PI+LQVLV 
Sbjct: 227 INLIIPIALQVLVD 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2203876	297	AT1G62500 [Arabidopsis thalian	0.533	0.242	0.616	1.3e-20
TAIR|locus:2090419	334	CWLP "cell wall-plasma membran	0.533	0.215	0.635	3.5e-20
TAIR|locus:4010713767	1480	AT3G22142 "AT3G22142" [Arabido	0.540	0.049	0.594	6.4e-20
TAIR|locus:2041927	291	AT2G10940 [Arabidopsis thalian	0.533	0.247	0.602	2.5e-19
TAIR|locus:2135635	177	AT4G12500 [Arabidopsis thalian	0.555	0.423	0.589	4.6e-18
TAIR|locus:2135625	182	AT4G12490 [Arabidopsis thalian	0.555	0.412	0.576	5.8e-18
TAIR|locus:2135595	161	AZI1 "azelaic acid induced 1"	0.518	0.434	0.605	9.5e-18
TAIR|locus:2135610	168	EARLI1 "EARLY ARABIDOPSIS ALUM	0.518	0.416	0.605	2e-17
TAIR|locus:2203886	149	AT1G62510 [Arabidopsis thalian	0.518	0.469	0.549	7.7e-16
TAIR|locus:2008880	137	ELP "extensin-like protein" [A	0.518	0.510	0.535	3.3e-15

TAIR|locus:2203876 AT1G62500 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query:    45 TGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLI 104
             T PI+ALKLGACVDV GGLIHIGLG+  +  CCP+LQGL +L+AA+CLCT IR+  L L 
Sbjct:   211 TCPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIRLKLLNL- 269

Query:   105 NLLVPISLQVLVS 117
             N+ +P++LQ L++
Sbjct:   270 NIFIPLALQALIT 282

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2090419 CWLP "cell wall-plasma membrane linker protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 47/74 (63%), Positives = 61/74 (82%)

Query:    44 QTGPIDALKLGACVDVPGGLIHIGLGHN-AKEKCCPLLQGLADLDAAICLCTAIRVNALK 102
             +T PID LKLGACVDV GGLIHIGLG + AK +CCP+L GL DLDAA+CLCT I++  L 
Sbjct:   248 ETCPIDTLKLGACVDVLGGLIHIGLGKSHAKAECCPVLGGLLDLDAAVCLCTTIKLKLLN 307

Query:   103 LINLLVPISLQVLV 116
              I+L++PI+L++L+
Sbjct:   308 -IDLVLPIALELLL 320

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:4010713767 AT3G22142 "AT3G22142" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 6.4e-20, P = 6.4e-20
 Identities = 44/74 (59%), Positives = 63/74 (85%)

Query:    44 QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKL 103
             +T PID LKLG+CVD+ GGL+HIG+G +AKEKCCP+++GL DLDAA+CLCT I+   L  
Sbjct:  1395 KTCPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLCTTIKAKLLN- 1453

Query:   104 INLLVPISLQVLVS 117
             I++++PI+L+VL++
Sbjct:  1454 IDVILPIALEVLLN 1467

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IEA

TAIR|locus:2041927 AT2G10940 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 44/73 (60%), Positives = 58/73 (79%)

Query:    45 TGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLI 104
             T PID LKLGACVD+ GGL+ IGLG  A  KCCPLL+GL +++AA CLCT +++ AL L 
Sbjct:   207 TCPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLKLKALDL- 265

Query:   105 NLLVPISLQVLVS 117
             NL VP++LQ+L++
Sbjct:   266 NLYVPVALQLLLT 278

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2135635 AT4G12500 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 46/78 (58%), Positives = 57/78 (73%)

Query:    47 PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINL 106
             PIDAL+LG C +V  GL+++ LG  + + CC L+QGL DLDAAICLCTA+R N L  INL
Sbjct:    95 PIDALRLGVCANVLSGLLNVQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLG-INL 153

Query:   107 LVPISLQVLVSTTVANIR 124
              VPISL VL++  V N R
Sbjct:   154 NVPISLSVLLN--VCNRR 169

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135625 AT4G12490 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 45/78 (57%), Positives = 57/78 (73%)

Query:    47 PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINL 106
             PIDAL+LG C +V  GL+++ LG  + + CC L+QGL DLDAA+CLCTA+R N L  INL
Sbjct:   100 PIDALRLGVCANVLSGLLNVQLGQPSPQPCCSLIQGLVDLDAAVCLCTALRANVLG-INL 158

Query:   107 LVPISLQVLVSTTVANIR 124
              VPISL VL++  V N R
Sbjct:   159 NVPISLSVLLN--VCNRR 174

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2135595 AZI1 "azelaic acid induced 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 43/71 (60%), Positives = 54/71 (76%)

Query:    47 PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINL 106
             PIDALKLG C +V   L++I LG  + ++CC L+QGL D+DAAICLCTA+R N L  INL
Sbjct:    79 PIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALRANVLG-INL 137

Query:   107 LVPISLQVLVS 117
              VPISL VL++
Sbjct:   138 NVPISLSVLLN 148

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135610 EARLI1 "EARLY ARABIDOPSIS ALUMINUM INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/71 (60%), Positives = 53/71 (74%)

Query:    47 PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINL 106
             PIDAL+LG C +V   L++I LG  + + CC L+QGL DLDAAICLCTA+R N L  INL
Sbjct:    86 PIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLG-INL 144

Query:   107 LVPISLQVLVS 117
              VPISL VL++
Sbjct:   145 NVPISLSVLLN 155

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009409 "response to cold" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2203886 AT1G62510 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 39/71 (54%), Positives = 52/71 (73%)

Query:    47 PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINL 106
             P DALKLG C +V  GL+++ LG    E CC L+QGLADL+AA CLCTA++ N L  INL
Sbjct:    68 PRDALKLGVCANVLNGLLNVTLGKPPVEPCCTLIQGLADLEAAACLCTALKANILG-INL 126

Query:   107 LVPISLQVLVS 117
              +P+SL +L++
Sbjct:   127 NIPLSLSLLLN 137

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2008880 ELP "extensin-like protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 38/71 (53%), Positives = 51/71 (71%)

Query:    47 PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINL 106
             P D LKLG C +V  GL+ + LG    E CC L+QGLAD++AA+CLCTA++ N L  INL
Sbjct:    56 PKDTLKLGVCANVLNGLLDLTLGKPPVEPCCSLIQGLADVEAAVCLCTALKANILG-INL 114

Query:   107 LVPISLQVLVS 117
              +PISL +L++
Sbjct:   115 NLPISLSLLLN 125

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
cd01958	85	cd01958, HPS_like, HPS_like: Hydrophobic Protein f	9e-18
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-04
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	4e-04
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	7e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	7e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PRK10431	445	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine ami	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.004
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.004

>gnl|CDD|238924 cd01958, HPS_like, HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

 Score = 72.0 bits (177), Expect = 9e-18
 Identities = 37/72 (51%), Positives = 52/72 (72%), Gaps = 2/72 (2%)

Query: 47  PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINL 106
           P DALKLG C +V G  +   LG  A + CCPL+ GLADLDAA+CLCTAI+ N L  I++
Sbjct: 5   PRDALKLGVCANVLGLSLL-LLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANIL-GISI 62

Query: 107 LVPISLQVLVST 118
            +P++L +L+++
Sbjct: 63  NIPVALSLLLNS 74

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells. Length = 85

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 14/46 (30%), Positives = 17/46 (36%)

Query: 5   NPTPPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAPPTELQTGPIDA 50
              PP +  +    PP V P P  P V   P  AP       P+D 
Sbjct: 395 ANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDE 440

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 9/35 (25%), Positives = 10/35 (28%)

Query: 6   PTPPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAPP 40
                  + P    P   P PA        P APP
Sbjct: 66  APAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 7/42 (16%), Positives = 7/42 (16%)

Query: 6   PTPPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAPPTELQTGP 47
                    P PP       P  P        AP        
Sbjct: 63  AAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104

Length = 1228

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 47  PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINL 106
               LKL  C     G   +       ++CC  L+ L     A C CTAIR   L  I  
Sbjct: 2   GQVLLKLAPCAGYLQGGCQV-----PSQQCCSQLRQLQ----AQCRCTAIRAIVLG-IEG 51

Query: 107 LVPISLQVLVS 117
           + P +   L S
Sbjct: 52  INPQAAASLPS 62

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 9/50 (18%)

Query: 7   TPPSQVSKPPPPPPTVKPTPAP-PVVKPPPPPAPPTELQTGPIDALKLGA 55
           TPPS    PP P PT  P P P P   P P P P  +    P+   K+G 
Sbjct: 919 TPPS----PPDPDPTPDPDPTPDPDPTPDPEPTPAYQ----PVLNAKVGG 960

Length = 1250

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 9  PSQVSKPPPPPPTVKPTPAPPVVKPPPPP 37
          P     PPPPPP  +P   PP   PPPPP
Sbjct: 5  PPGNPPPPPPPPGFEPPSQPP---PPPPP 30

Length = 2365

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 8  PPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAPPTELQT 45
          PP   + PPPPPP   P   PP  +PPPPP P   ++ 
Sbjct: 5  PPG--NPPPPPPP---PGFEPPS-QPPPPPPPGVNVKK 36

Length = 2365

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 9/48 (18%), Positives = 11/48 (22%)

Query: 5   NPTPPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAPPTELQTGPIDALK 52
             + P+       P       PA      PP PA        P     
Sbjct: 54  AASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101

Length = 1228

>gnl|CDD|236692 PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 13/33 (39%), Positives = 14/33 (42%)

Query: 7   TPPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAP 39
           T  + V  PPPPPP V      P V  P    P
Sbjct: 124 TINADVPPPPPPPPVVAKRVETPAVVAPRVSEP 156

Length = 445

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%)

Query: 6   PTPPSQVSKPPPPPPT------VKPTPAPPVVKPPPPPAP 39
           P  P   + PP PP         +P PAP       PPA 
Sbjct: 397 PAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPAR 436

Length = 576

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 11/44 (25%), Positives = 13/44 (29%)

Query: 6   PTPPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAPPTELQTGPID 49
           P PP+  +   PP P      A     PP   A          D
Sbjct: 72  PAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 14/44 (31%), Positives = 17/44 (38%)

Query: 6   PTPPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAPPTELQTGPID 49
            TP    +  P P P     P PP    PP PAP  +    P+ 
Sbjct: 140 TTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVA 183

Length = 418

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	99.97
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	99.97
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	96.07
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	95.38
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	94.3
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	91.13
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	89.22
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	81.48

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=99.97  E-value=4.9e-33  Score=198.39  Aligned_cols=80  Identities=48%  Similarity=0.890  Sum_probs=77.1

Q ss_pred             CCCccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhh-hcCCCcC
Q 042898           45 TGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLV-STTVANI  123 (135)
Q Consensus        45 ~CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl-~CGk~~p  123 (135)
                      +||+|++|||+|+||| |++++.+|.+.+++||++|+||+|+|||+|||+|+|+|+||+|++++|++|++|+ .|||+.|
T Consensus         1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p   79 (85)
T PF14547_consen    1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP   79 (85)
T ss_pred             CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence            6999999999999999 6999999999999999999999999999999999999999999999999999999 8999987


Q ss_pred             CC
Q 042898          124 RQ  125 (135)
Q Consensus       124 ~~  125 (135)
                      +.
T Consensus        80 ~g   81 (85)
T PF14547_consen   80 SG   81 (85)
T ss_pred             CC
Confidence            64

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=99.97  E-value=1.4e-33  Score=201.83  Aligned_cols=79  Identities=51%  Similarity=0.849  Sum_probs=76.1

Q ss_pred             CCCCccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhh-hcCCCc
Q 042898           44 QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLV-STTVAN  122 (135)
Q Consensus        44 ~~CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl-~CGk~~  122 (135)
                      ++||||++|||+|+|||| ++++.+|++++++||++|+||+|+|||+|||||||+|+|| |++|+|++|++|+ +|||+.
T Consensus         2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lg-i~~~~pv~l~llln~CGk~~   79 (85)
T cd01958           2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG-ISINIPVALSLLLNSCGRNV   79 (85)
T ss_pred             CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccC-cccccChhHHHHHHHHcCcC
Confidence            689999999999999995 8899999999999999999999999999999999999999 9999999999999 899998


Q ss_pred             CC
Q 042898          123 IR  124 (135)
Q Consensus       123 p~  124 (135)
                      |+
T Consensus        80 P~   81 (85)
T cd01958          80 PP   81 (85)
T ss_pred             CC
Confidence            86

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=96.07  E-value=0.0007  Score=46.10  Aligned_cols=63  Identities=24%  Similarity=0.394  Sum_probs=46.9

Q ss_pred             ccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhhhcCCCcCC
Q 042898           50 ALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIR  124 (135)
Q Consensus        50 aLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CGk~~p~  124 (135)
                      ..+|..|...+.      .|.++...||.-|+.     +--|||.-+|...|+ .-|+.+-++++.-.||..+|+
T Consensus         3 ~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~-~~i~~~~A~~l~~~Cgv~~P~   65 (66)
T cd01959           3 PTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLK-QYVNSPNARKVLAACGVPYPN   65 (66)
T ss_pred             hhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHH-hhcCcHHHHHHHHHcCCCCCC
Confidence            357888987542      356788899999997     237999999987676 446666677666699998874

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=95.38  E-value=0.0024  Score=40.78  Aligned_cols=69  Identities=28%  Similarity=0.435  Sum_probs=43.7

Q ss_pred             CccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceee----eccccchhhhh-hcCCC
Q 042898           47 PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLIN----LLVPISLQVLV-STTVA  121 (135)
Q Consensus        47 P~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~In----l~iPi~L~lLl-~CGk~  121 (135)
                      .....++..|...+.+-   .....+.+.||..++++.   ...|+|.+++..+.+ +.    ++...+. .|- .||..
T Consensus         2 ~~~~~~~~~c~~~~~~~---~~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~-~~~~~~~~~~~a~-~lp~~C~~~   73 (79)
T smart00499        2 GQVLLQLAPCLSYLTGG---SPGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLG-ILEIPGVNAQNAA-SLPSACGVP   73 (79)
T ss_pred             hhhhhhHHhhHHHHcCC---CCCCCCchHHHHHHHHhc---ccCCcchhhhccccc-ccchhhhhHHHHH-hhHHhcCCC
Confidence            33444555676655311   012346688999999997   777999999998776 32    2333233 344 89987


Q ss_pred             cC
Q 042898          122 NI  123 (135)
Q Consensus       122 ~p  123 (135)
                      .+
T Consensus        74 ~~   75 (79)
T smart00499       74 PP   75 (79)
T ss_pred             CC
Confidence            66

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=94.30  E-value=0.0043  Score=42.23  Aligned_cols=54  Identities=19%  Similarity=0.376  Sum_probs=32.7

Q ss_pred             CCCCCCCCCccccCCcccchhhhhhHhhhccc-cceeeeccccchhhhhhcCCCcCC
Q 042898           69 GHNAKEKCCPLLQGLADLDAAICLCTAIRVNA-LKLINLLVPISLQVLVSTTVANIR  124 (135)
Q Consensus        69 G~p~~~~CC~LI~GL~dldAAvCLCtAiKAnv-LG~Inl~iPi~L~lLl~CGk~~p~  124 (135)
                      +..+...||.-++.+.+. ...|||..++... .+ +++|..-.+.+.-.||...+.
T Consensus        39 ~~~Ps~~CC~~l~~~~~~-~~~ClC~~~~~~~~~~-~~in~~~a~~Lp~~Cg~~~~~   93 (96)
T PF14368_consen   39 GPAPSAACCSALKSVVQA-DPPCLCQLLNSPGAPG-FGINVTRALALPAACGVPVPP   93 (96)
T ss_dssp             -----HHHHHHHCC-----HCCHHHCCCC-CCHCH-HCCTCHHHHHHHHHCTSS-S-
T ss_pred             CCCCCHHHHHHHHHhccC-CCCCHHHhcCcccccc-CCcCHHHHHHHHHHcCCCCCC
Confidence            345678899999999774 4899999999987 45 566665555444499998875

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=91.13  E-value=0.036  Score=35.56  Aligned_cols=32  Identities=25%  Similarity=0.586  Sum_probs=25.1

Q ss_pred             CCCCCCCCccccCCcccchhhhhhHhhhccccc
Q 042898           70 HNAKEKCCPLLQGLADLDAAICLCTAIRVNALK  102 (135)
Q Consensus        70 ~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG  102 (135)
                      ..+...||.-++.+.+.| ..|||..+|.....
T Consensus        13 ~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~   44 (63)
T cd00010          13 TAPPSDCCSGLKSVVKSD-PKCLCAALNGPGAS   44 (63)
T ss_pred             CCCChHHHHHHHHHHhcC-hhhHHHHHcCcccc
Confidence            346788999999987764 46999999986644

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=89.22  E-value=0.051  Score=36.69  Aligned_cols=67  Identities=18%  Similarity=0.249  Sum_probs=40.7

Q ss_pred             cccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhhhcCCCcCC
Q 042898           49 DALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIR  124 (135)
Q Consensus        49 daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CGk~~p~  124 (135)
                      |..+|..|...+.|   -.-...+.+.||+-|+.+   |. .|+|..+++..+.+  +|..-+.+|--.||...+.
T Consensus         4 ~~~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~--i~~~~a~~Lp~~Cgv~~p~   70 (73)
T cd04660           4 DLDLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI--IDPDKAVYLPAKCGLPLPP   70 (73)
T ss_pred             CHHHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc--cCHHHHHHHHHHcCCCCCC
Confidence            33466778775520   000123567799999985   22 39999999876652  4444344333389998774

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=81.48  E-value=0.26  Score=33.99  Aligned_cols=69  Identities=19%  Similarity=0.250  Sum_probs=41.7

Q ss_pred             ccccccccccccchhhcccCCCCCCCCCccccCCccc----chhhhhhHhhhccccceee-eccccchhhhhhcCCCcCC
Q 042898           50 ALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADL----DAAICLCTAIRVNALKLIN-LLVPISLQVLVSTTVANIR  124 (135)
Q Consensus        50 aLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dl----dAAvCLCtAiKAnvLG~In-l~iPi~L~lLl~CGk~~p~  124 (135)
                      ..+|.-|.+.+.|-     +..+...||.-++.|.+.    +...|+|.-+|....+ +. +|...+++|=-.||...+.
T Consensus         7 ~~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~-~~~i~~~~a~~LP~~C~v~~~~   80 (89)
T cd01960           7 TSLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAG-ISGLNPGRAAGLPGKCGVSIPY   80 (89)
T ss_pred             HhhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccc-cCCCCHHHHHhChHhcccCCCC
Confidence            44677787766421     234667899999998654    2234666667776666 33 4443333332289987653

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	5e-12
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	8e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	9e-04

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1 Length = 80

 Score = 56.4 bits (136), Expect = 5e-12
 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 10/67 (14%)

Query: 52  KLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPIS 111
            L  C+++ GG +         + CC L+ GL D++A +CLC  +R  AL ++N  +  +
Sbjct: 10  DLSICLNILGGSLG------TVDDCCALIGGLGDIEAIVCLCIQLR--ALGILN--LNRN 59

Query: 112 LQVLVST 118
           LQ+++++
Sbjct: 60  LQLILNS 66

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 40.3 bits (92), Expect = 8e-05
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 6   PTPPSQVSKP-PPPPPTVKPTPAPPVVKPPPP-PAPPTELQT 45
           PTPP + + P  P   T KP    PV       P PPT L+ 
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 13/45 (28%)

Query: 6   PTPPSQVSKPPPPPPTVKPTPAPPVVKPPPPPAPPTELQTGPIDA 50
           P   S     P   P     PA      P    P   +Q  P+ A
Sbjct: 103 PAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 37.1 bits (85), Expect = 9e-04
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 6   PTPPSQVSKPPPPPPTVKPT--PAPPVVKPPPPPAPPTE 42
           PT P   + P  P    +    PAP        P PP +
Sbjct: 309 PTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVK 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	99.91
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	95.85
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	95.6
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	94.41
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	89.68
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	88.14
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	87.23

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=99.91  E-value=1.4e-26  Score=163.50  Aligned_cols=69  Identities=33%  Similarity=0.740  Sum_probs=60.5

Q ss_pred             CCCCCccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhh-hcCCC
Q 042898           43 LQTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLV-STTVA  121 (135)
Q Consensus        43 ~~~CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl-~CGk~  121 (135)
                      .++||    |||+|+|||||++    |  ++++||++|+||+|+|||+|||||||+  || | +|+|++|++|+ .|||+
T Consensus         5 ~~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik~--Lg-i-lnlpv~L~llln~Cgk~   70 (80)
T 1hyp_A            5 RPSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLRA--LG-I-LNLNRNLQLILNSCGRS   70 (80)
T ss_dssp             -CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHHH--HT-C-SCHHHHHHHHHHHTTCS
T ss_pred             CCCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhccc--cc-e-eecChhHHHHHHHhCCc
Confidence            35799    8999999998643    2  568999999999999999999999994  99 7 89999999999 89999


Q ss_pred             cCCC
Q 042898          122 NIRQ  125 (135)
Q Consensus       122 ~p~~  125 (135)
                      .|+.
T Consensus        71 ~P~g   74 (80)
T 1hyp_A           71 YPSN   74 (80)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            8853

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=95.85  E-value=0.00052  Score=45.50  Aligned_cols=61  Identities=18%  Similarity=0.294  Sum_probs=44.5

Q ss_pred             cccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhhhcCCCcC
Q 042898           51 LKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANI  123 (135)
Q Consensus        51 LkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CGk~~p  123 (135)
                      .+|..|...+.      -|.++...||.-|++     +..|||..+|.-.++ ..||.+.+.++.-.||..+|
T Consensus         6 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            6 GQLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYG-RYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHH-HHTTTTTGGGCCCCCSSCSC
T ss_pred             hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHHHHHHcCCCCC
Confidence            36677877652      244567789999985     488999999976666 55677667765559999876

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=95.60  E-value=0.00064  Score=44.80  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=44.2

Q ss_pred             cccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhhhcCCCcC
Q 042898           51 LKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANI  123 (135)
Q Consensus        51 LkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CGk~~p  123 (135)
                      .+|..|...+.      -|.++...||.-|++     +..|||..+|.-.++ ..||.+.+.++.-.||..+|
T Consensus         5 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYG-QYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTH-HHHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHHHHHHcCCCCC
Confidence            35677877552      244567789999985     488999999987666 45666667765559999876

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=94.41  E-value=0.0034  Score=41.85  Aligned_cols=69  Identities=19%  Similarity=0.287  Sum_probs=45.7

Q ss_pred             CCCCccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhc---cccceeeeccccchhhhhhcCC
Q 042898           44 QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRV---NALKLINLLVPISLQVLVSTTV  120 (135)
Q Consensus        44 ~~CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKA---nvLG~Inl~iPi~L~lLl~CGk  120 (135)
                      ..|-.+..+|..|...+.|    +-+..+...||.-|++ +|   ..|||..++.   .-+|   ||...++++--.||.
T Consensus         3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~g---in~~~A~~LP~~Cgv   71 (77)
T 2rkn_A            3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFG---VDPELASALPKQCGL   71 (77)
T ss_dssp             CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHT---BCHHHHHHHHHHTTC
T ss_pred             chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcC---cCHHHHHHHHHHcCC
Confidence            4577777788888876631    1113456679999998 34   3899999883   3334   344445554449999


Q ss_pred             CcC
Q 042898          121 ANI  123 (135)
Q Consensus       121 ~~p  123 (135)
                      ..|
T Consensus        72 ~~p   74 (77)
T 2rkn_A           72 ANA   74 (77)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            876

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=89.68  E-value=0.014  Score=40.25  Aligned_cols=70  Identities=16%  Similarity=0.214  Sum_probs=42.9

Q ss_pred             CCccccccccccccccchhhcccCCCCCCCCCccccCCccc-----c-hhhhhhHhhhcccccee-eeccccchhhhhhc
Q 042898           46 GPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADL-----D-AAICLCTAIRVNALKLI-NLLVPISLQVLVST  118 (135)
Q Consensus        46 CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dl-----d-AAvCLCtAiKAnvLG~I-nl~iPi~L~lLl~C  118 (135)
                      |-....+|.-|.+.+.|      |.++...||.-|++|.+.     | -+.|||.  |...-+ + .||...+++|--.|
T Consensus         3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~~-~~~in~~~A~~LP~~C   73 (91)
T 1siy_A            3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAGA-VRGINPNNAEALPGKC   73 (91)
T ss_dssp             TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTTC-CSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcccc-cCCcCHHHHHHHHHHc
Confidence            54445667778776531      223666799999988543     3 2689997  433222 3 34554455544489


Q ss_pred             CCCcCC
Q 042898          119 TVANIR  124 (135)
Q Consensus       119 Gk~~p~  124 (135)
                      |...+-
T Consensus        74 gv~~p~   79 (91)
T 1siy_A           74 GVNIPY   79 (91)
T ss_dssp             TCCCSS
T ss_pred             CCCCCC
Confidence            998763

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=88.14  E-value=0.0088  Score=41.31  Aligned_cols=71  Identities=17%  Similarity=0.248  Sum_probs=44.4

Q ss_pred             CCccccccccccccccchhhcccCCCCCCCCCccccCCccc-----c-hhhhhhHhhhccccceeeeccccchhhhhhcC
Q 042898           46 GPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADL-----D-AAICLCTAIRVNALKLINLLVPISLQVLVSTT  119 (135)
Q Consensus        46 CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dl-----d-AAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CG  119 (135)
                      |-....+|.-|...+.|      |.++...||.-|++|...     | -+.|||...++.-++  .||...+++|--.||
T Consensus         4 C~~v~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~--~in~~~A~~LP~~Cg   75 (92)
T 2alg_A            4 CGQVSSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP--GVNPNNAAALPGKCG   75 (92)
T ss_dssp             HHHHHHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST--TCCHHHHHHHHHHTT
T ss_pred             hHHHHHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC--ccChHHHHHHHHHcC
Confidence            33334567888776631      223455799999988632     2 268999976666552  344444555444999


Q ss_pred             CCcCC
Q 042898          120 VANIR  124 (135)
Q Consensus       120 k~~p~  124 (135)
                      ...+-
T Consensus        76 v~~p~   80 (92)
T 2alg_A           76 VSIPY   80 (92)
T ss_dssp             CCCSS
T ss_pred             CCCCC
Confidence            98774

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=87.23  E-value=0.011  Score=40.78  Aligned_cols=66  Identities=21%  Similarity=0.307  Sum_probs=40.0

Q ss_pred             ccccccccccccchhhcccCCCCCCCCCccccCCccc-----c-hhhhhhHhhhcccccee-eeccccchhhhhhcCCCc
Q 042898           50 ALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADL-----D-AAICLCTAIRVNALKLI-NLLVPISLQVLVSTTVAN  122 (135)
Q Consensus        50 aLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dl-----d-AAvCLCtAiKAnvLG~I-nl~iPi~L~lLl~CGk~~  122 (135)
                      ..+|.-|.+.+.|      |..+...||.-+++|...     | .+.|||.  |....+ + .||...+++|--.||...
T Consensus         7 ~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClCl--k~~~~~-~~~in~~~A~~LP~~C~v~~   77 (90)
T 1bwo_A            7 DSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCL--KGIARG-IHNLNEDNARSIPPKCGVNL   77 (90)
T ss_dssp             HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHH--HHHHTT-CTTCCHHHHHTHHHHHTCCC
T ss_pred             HHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCc--cCchhc-cCCcCHHHHHHHHHHcCCCC
Confidence            4567778776631      223566799999988642     1 2689994  433322 2 344444554444899987


Q ss_pred             CC
Q 042898          123 IR  124 (135)
Q Consensus       123 p~  124 (135)
                      +-
T Consensus        78 p~   79 (90)
T 1bwo_A           78 PY   79 (90)
T ss_dssp             SS
T ss_pred             CC
Confidence            63

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1hypa_	75	a.52.1.1 (A:) Soybean hydrophobic protein {Soybean	1e-14

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]} Length = 75

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 62.1 bits (151), Expect = 1e-14
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 10/67 (14%)

Query: 52  KLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPIS 111
            L  C+++ GG +         + CC L+ GL D++A +CLC  +R   +    L +  +
Sbjct: 5   DLSICLNILGGSLG------TVDDCCALIGGLGDIEAIVCLCIQLRALGI----LNLNRN 54

Query: 112 LQVLVST 118
           LQ+++++
Sbjct: 55  LQLILNS 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	99.91
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	83.88

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.91  E-value=7.6e-27  Score=161.56  Aligned_cols=68  Identities=31%  Similarity=0.697  Sum_probs=59.7

Q ss_pred             CCCCccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhh-hcCCCc
Q 042898           44 QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLV-STTVAN  122 (135)
Q Consensus        44 ~~CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl-~CGk~~  122 (135)
                      ++||    |||+|+|||||++      +.+++||++|+||+|+|||+||||||||+  | + +|+||+|++|+ +|||+.
T Consensus         1 PtCP----Klg~C~nvLg~~~------~~~~~CC~Ll~GL~dleAAvCLCtaika~--~-l-lnvpv~l~llln~Cgk~~   66 (75)
T d1hypa_           1 PSCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLCIQLRAL--G-I-LNLNRNLQLILNSCGRSY   66 (75)
T ss_dssp             CCSC----CCGGGGGGGGTCC------TTHHHHHHHHHTSCHHHHHHHHHHHHHHH--T-C-SCHHHHHHHHHHHTTCSS
T ss_pred             CCCC----chhhHHHHhcCcc------CCCCCcchHHhhHHHHHHHHHHHHHHHHh--h-h-ccccchHHHHHHHcCCcC
Confidence            3799    8999999998764      34688999999999999999999999994  4 3 78899999999 899999


Q ss_pred             CCC
Q 042898          123 IRQ  125 (135)
Q Consensus       123 p~~  125 (135)
                      |+.
T Consensus        67 P~g   69 (75)
T d1hypa_          67 PSN   69 (75)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            864

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=83.88  E-value=0.054  Score=35.14  Aligned_cols=64  Identities=20%  Similarity=0.330  Sum_probs=45.6

Q ss_pred             cccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhhhcCCCcCC
Q 042898           49 DALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIR  124 (135)
Q Consensus        49 daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CGk~~p~  124 (135)
                      |..+|..|+..+      ..|.++...||+-|.     |---|||.-+|--.++ =-|+=|-+=+++-.||..+|+
T Consensus         3 ~p~~L~~C~~Ai------~~g~~PS~~CC~kLk-----eQ~~ClC~Y~kdP~~~-~yv~spnarkv~~aCgvp~P~   66 (67)
T d1tuka1           3 QASQLAVCASAI------LSGAKPSGECCGNLR-----AQQGCFCQYAKDPTYG-QYIRSPHARDTLTSCGLAVPH   66 (67)
T ss_dssp             CGGGGGGGHHHH------HHCCCCCHHHHHHHH-----HHGGGHHHHTTCTTTH-HHHTSHHHHHHHHHTTCCCCC
T ss_pred             ChhhccccHHHH------hcCCCCcHHHHHHHH-----hcCCccceecCCccHH-HHcCCHHHHHHHHhcCCCCCC
Confidence            456899998755      356778889999876     3357999999998876 334444344444499998875