Citrus Sinensis ID: 042915

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-
Protein Sequence
MSLVIIFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccEEEEEcccccccccccEEcccccccccccEEcccccccccEEEEEEcccccEEEEEEEEEcccccccccccEEEEEEEcEEEEEEEccccccccccEEEEEEEEEcccccccccEEccccccccEEEEEEEEcccccccccccccccEEEEEEccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHcccccccccEEEEccccccccccEEEEEEccccccccccccEEEEEEEcccccccccccccccEEEEEcccccccEEEEEEEccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEcccccccEEEEEEcccccEEEccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccEEEccccHcccccccccccHHccccccHEcccccccccccEEEEEcccccEEEEEEEEEEccccccccccEEEEEEccccEEEEEEcccccccccEEEEEEEEcccccEEEEEEEccccccccEEEEEEEccccccccccccccccEEEEEEEEccccccEEEccccccccEEEccccccccEEEcccccccccccccHHHHHHccccccccccEEEEEcccccccccEEEEEEEHHHHccccccEEEEEEEEcccEccccccccHccccEEEcccccccEEEEEEEEccccccccEEEEEEEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccccEEEEEEEccccccccccHHHHHHHHHHEEEccccccccccccHccccccEEEEcccccccccccHHHHHcccccEEEEccccccccccHHHHccccccc
Coil and Loop (DISEMBL)
MSLVIIFLLWffsspffalsqpttspqdfllscgdtvglttgrlkflpdkdfqflgntttlkqpgllpilsTLRFFTELQARKYCYVFNVTQGDKYLVRTTYyyggfdggtqppvfdqiiggtkwsIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLarnndttshpfISAIELsklddslynttdlnkFALSSIarssfgddarisfpddlfnrkwnsfkdlnpveenknkvnpedfwnkppakaflssitttkgkplqiqwppgplpnsrYYIALYFqenrapspeswRVFNVSvngntffkdlnvttngvavygnewplsgqtnitmtprndmpvgpiisageifqllplagttfprDVVAMEELAkhfknppidwngdpclpwenswtgvtcnkskhtRVVSIDLkgfeisgtlpesignLTALKHLRLGgnklwgqipemkTLTALETLHLennqfegwipqtlsqLPILREIFLQnnnldgqipdglwkpglniq
Flexible Loop (DISEMBL)
MSLVIIFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTttlkqpgllpILSTLRFFTELQARKYCYVFnvtqgdkyLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDARISFPDDLFNRKwnsfkdlnpveenknkvnpedfwnkpPAKAFLSSitttkgkplqiqwppgpLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHfknppidwngdpCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNnldgqipdglwkpglniq
Low Complexity Region (SEG)
MSLVIIFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRttyyyggfdggtQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ
Disordered region (IsUnstruct)
**LVIIFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDARISFPDDLFNRKWNSFKD****************W******AFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK******
Disordered Region (DISOPRED)
**LVIIFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNI*
Disordered Region (DISEMBL)
MSLVIIFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ
Disordered Region (DISPRO)
MSLVIIFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLVIIFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	501	2.2.26 [Sep-21-2011]
Q9ZQQ7	886	Putative leucine-rich rep	no	no	0.866	0.489	0.307	1e-47
Q9ZQR3	868	Leucine-rich repeat recep	no	no	0.830	0.479	0.302	1e-44
Q9FN93	887	Probable LRR receptor-lik	no	no	0.868	0.490	0.271	7e-42
C0LGI2	929	Probable LRR receptor-lik	no	no	0.934	0.503	0.296	2e-41
Q9LIG2	899	Receptor-like protein kin	no	no	0.810	0.451	0.301	3e-41
C0LGW2	884	Probable LRR receptor-lik	no	no	0.824	0.467	0.289	4e-40
C0LGD8	864	Probable LRR receptor-lik	no	no	0.814	0.472	0.284	2e-39
Q9SI06	892	Putative leucine-rich rep	no	no	0.864	0.485	0.288	5e-39
C0LGT5	866	Probable LRR receptor-lik	no	no	0.764	0.442	0.302	7e-39
O81069	884	Probable leucine-rich rep	no	no	0.770	0.436	0.281	3e-38

>sp|Q9ZQQ7|Y2144_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=1 SV=1

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 223/471 (47%), Gaps = 37/471 (7%)

Query: 44  LKFLPDKDFQFLGNTTTLKQPGLLPILS----TLRFFTELQARKYCYVFNVTQGDKYLVR 99
           L ++ D +F   G T  +K    +   S     LR+F E    + CY  +V QG KYL+R
Sbjct: 50  LTYISDVNFVRGGKTGNIKNNSDIDFTSRPYKVLRYFPE--GIRNCYSLSVKQGTKYLIR 107

Query: 100 TTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAE-DFANGLSSYYEVVVAAVGNSLSVCLA 158
           T ++YG +DG    P FD  +G   W+ VD  + D  +G+    E++     N L +CL 
Sbjct: 108 TLFFYGNYDGLNTSPRFDLFLGPNIWTSVDVQKVDGGDGVIE--EIIHVTRCNILDICLV 165

Query: 159 RNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDAR-ISFPDDLFNRKW 217
           +   TT  P ISAIEL  L    Y+T      +L  I    F +  + + +P+D+++R W
Sbjct: 166 KTGTTT--PMISAIELRPLR---YDTYTARTGSLKKILHFYFTNSGKEVRYPEDVYDRVW 220

Query: 218 --NSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYI 275
             +S  +   +   +N     D +N P      +SI T   +PL   W      +   Y 
Sbjct: 221 IPHSQPEWTQINTTRNVSGFSDGYNPPQDVIKTASIPTNVSEPLTFTWMSES-SDDETYA 279

Query: 276 ALYFQENRAPSPESWRVFNVSVNG--------NTFFKDLNVTTNGVAVYGNEWPLSGQTN 327
            LYF E +       R F + VNG          F  +  +T   +   G       +  
Sbjct: 280 YLYFAEIQQLKANETRQFKILVNGVYYIDYIPRKFEAETLITPAALKCGGG----VCRVQ 335

Query: 328 ITMTPRNDMPVGPIISAGEIFQLLPL-AGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLP 386
           ++ TP++ +P  P ++A EIF ++      T   +V+A++ +   +K   I W GDPC+P
Sbjct: 336 LSKTPKSTLP--PQMNAIEIFSVIQFPQSDTNTDEVIAIKNIQSTYKVSRISWQGDPCVP 393

Query: 387 WENSWTGVTCNK---SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQI- 442
            + SW GV+CN    S   R++S+DL    ++G +  SI NLT L+ L L  N L G I 
Sbjct: 394 IQFSWMGVSCNVIDISTPPRIISLDLSSSGLTGVITPSIQNLTMLRELDLSNNNLTGVIP 453

Query: 443 PEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           P ++ LT L  L L NN   G +P+ L+ +  L  I L+ NNL G +P  L
Sbjct: 454 PSLQNLTMLRELDLSNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSVPQAL 504

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9ZQR3|Y2451_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 OS=Arabidopsis thaliana GN=At2g14510 PE=2 SV=1

 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 211/447 (47%), Gaps = 31/447 (6%)

Query: 41  TGRLKFLPDKDFQFLGNTTTLKQPG----LLPILSTLRFFTELQARKYCYVFNVTQGDKY 96
           +  L F+ D +F   G T  ++       +      LR+F +    + CY  +V QG KY
Sbjct: 46  SSNLTFISDVNFIRGGKTGNIQNNSRTNFIFKPFKVLRYFPD--GIRNCYSLSVKQGTKY 103

Query: 97  LVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDT-AEDFANGLSSYYEVVVAAVGNSLSV 155
           L+RT +YYG +DG    P FD  +G   W+ VD    D  +G+    E+V     N L +
Sbjct: 104 LIRTLFYYGNYDGLNTSPRFDLFLGPNIWTSVDVLIADVGDGVVE--EIVHVTRSNILDI 161

Query: 156 CLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGD-DARISFPDDLFN 214
           CL +    TS P ISAIEL  L    Y+T      +L S+A   F + D  I +P+D+++
Sbjct: 162 CLVKTG--TSTPMISAIELRPLR---YDTYTARTGSLKSMAHFYFTNSDEAIRYPEDVYD 216

Query: 215 RKWNSFK--DLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSR 272
           R W  +   +   +   +N     D +N P      +SI T   +PL   W      +  
Sbjct: 217 RVWMPYSQPEWTQINTTRNVSGFSDGYNPPQGVIQTASIPTNGSEPLTFTWNLES-SDDE 275

Query: 273 YYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQ-----TN 327
            Y  L+F E +       R F +  NG  +  D            N  PL  +       
Sbjct: 276 TYAYLFFAEIQQLKVNETREFKILANGVDYI-DYTPWKFEARTLSNPAPLKCEGGVCRVQ 334

Query: 328 ITMTPRNDMPVGPIISAGEIFQLLPL-AGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLP 386
           ++ TP++ +P  P+++A EIF ++      T   +V+A++++   ++   I W GDPC+P
Sbjct: 335 LSKTPKSTLP--PLMNAIEIFSVIQFPQSDTNTDEVIAIKKIQSTYQLSRISWQGDPCVP 392

Query: 387 WENSWTGVTCNK---SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP 443
            + SW GV+CN    S   R++S+DL    ++G +  SI NLT L+ L L  N L G++P
Sbjct: 393 KQFSWMGVSCNVIDISTPPRIISLDLSLSGLTGVISPSIQNLTMLRELDLSNNNLTGEVP 452

Query: 444 E-MKTLTALETLHLENNQFEGWIPQTL 469
           E + T+  L  +HL  N   G +PQ L
Sbjct: 453 EFLATIKPLLVIHLRGNNLRGSVPQAL 479

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN93|Y5596_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1

 Score =  172 bits (435), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 228/475 (48%), Gaps = 40/475 (8%)

Query: 22  PTTSPQDFLLSCGDTVGLTTGRL-KFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQ 80
           P T P+  L    D   + +G++ +   + +  FL  +TT+            R+F +  
Sbjct: 43  PYTEPRTGLQFSSDAAFIQSGKIGRIQANLEADFLKPSTTM------------RYFPD-- 88

Query: 81  ARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSS 140
            ++ CY  NV +G  +L+R  + YG +DG    P FD  +G   W+ +D A+   NG   
Sbjct: 89  GKRNCYNLNVEKGRNHLIRARFVYGNYDGRDTGPKFDLYLGPNPWATIDLAKQ-VNGTRP 147

Query: 141 YYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSF 200
             E++     N L VCL +  +TT  P IS +E+  +    Y T      +L    R  F
Sbjct: 148 --EIMHIPTSNKLQVCLVKTGETT--PLISVLEVRPMGSGTYLT---KSGSLKLYYREYF 200

Query: 201 G-DDARISFPDDLFNRKWNSFKDLN--PVEENKNKVNPEDFWNKPPAKAF-LSSITTTKG 256
              D+ + +PDD+++R+W SF D     +    +  N  D+  KPP  A   ++I T   
Sbjct: 201 SKSDSSLRYPDDIYDRQWTSFFDTEWTQINTTSDVGNSNDY--KPPKVALTTAAIPTNAS 258

Query: 257 KPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVY 316
            PL  +W     P+ +YY+  +F E +       R FN+ +NG  FF  +      ++  
Sbjct: 259 APLTNEW-SSVNPDEQYYVYAHFSEIQELQANETREFNMLLNGKLFFGPVVPPKLAISTI 317

Query: 317 GNEWPLS---GQTNITMTPRNDMPVGPIISAGEIFQLLPLAG-TTFPRDVVAMEELAKHF 372
            +  P +   G+ N+ +   N   + P+++A E+++++      T   DV A++ +   +
Sbjct: 318 LSVSPNTCEGGECNLQLIRTNRSTLPPLLNAYEVYKVIQFPQLETNETDVSAVKNIQATY 377

Query: 373 KNPPIDWNGDPCLPWENSWTGVTCNKSKHT---RVVSIDLKGFEISGTLPESIGNLTALK 429
           +   I+W  DPC+P +  W G+ C+ +  T   R+ +++L    ++GT+  +I NLT L+
Sbjct: 378 ELSRINWQSDPCVPQQFMWDGLNCSITDITTPPRITTLNLSSSGLTGTITAAIQNLTTLE 437

Query: 430 HLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
            L L  N L G++PE +  + +L  ++L  N   G IPQ+L +  +  E+  Q N
Sbjct: 438 KLDLSNNNLTGEVPEFLSNMKSLLVINLSGNDLNGTIPQSLQRKGL--ELLYQGN 490

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGI2|Y1677_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 158/532 (29%), Positives = 237/532 (44%), Gaps = 64/532 (12%)

Query: 1   MSLVIIFLLWFFSSPFFALSQPTTSPQDFL-LSCGDTVGLTTGR--LKFLPDKDFQFLGN 57
           + L  + +   F  PF  LSQ T    +F+ + CG +   T  R  L ++ D +    G 
Sbjct: 3   LCLAQLAVTCLFLVPF-VLSQVT----EFVSIDCGCSSNYTDPRTGLGWVSDSEIIKQGK 57

Query: 58  TTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFD 117
             TL       +    R       +KYCY  +  +  +Y+VRTT+ YGG       P F 
Sbjct: 58  PVTLANTNWNSMQYRRRRDFPTDNKKYCYRLSTKERRRYIVRTTFLYGGLGSEEAYPKFQ 117

Query: 118 QIIGGTKWSIVDTAEDFANGLSSYY--EVVVAAVGNSLSVCLARNNDTTSHPFISAIELS 175
             +  TKW+ V   E     +S  Y  E++V A  + + VC+      T  PF+S +EL 
Sbjct: 118 LYLDATKWATVTIQE-----VSRVYVEELIVRATSSYVDVCVC--CAITGSPFMSTLELR 170

Query: 176 KLDDSLYNTTDLNKFALSSIARSSFGD---DARISFPDDLFNRKWNSFKDLNP-----VE 227
            L+ S+Y T   + F L   AR +FG    DA + +PDD ++R W S  +  P     V 
Sbjct: 171 PLNLSMYATDYEDNFFLKVAARVNFGAPNMDA-LRYPDDPYDRIWESDINKRPNYLVGVA 229

Query: 228 ENKNKVNPEDFWNK-----PPAKAFLSSITTTKG---KPLQIQWPPGPLPNSRYYIALYF 279
               ++N     N      PP K   +++  T+G     L ++  P    N+R Y   YF
Sbjct: 230 PGTTRINTSKTINTLTREYPPMKVMQTAVVGTQGLISYRLNLEDFPA---NARAYA--YF 284

Query: 280 QENRAPSPESWRVFNVSVNGNTFFKD-----LNVTTNGVAVYGNEWPLSGQTNITMT--- 331
            E         R F +      +F D     +N+  N    Y    P     N+T+    
Sbjct: 285 AEIEELGANETRKFKLV---QPYFPDYSNAVVNIAENANGSYTLYEP--SYMNVTLDFVL 339

Query: 332 -----PRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDW---NGDP 383
                   D   GP+++A EI + LP++  T   DV  ++  A    +P  DW    GDP
Sbjct: 340 TFSFGKTKDSTQGPLLNAIEISKYLPISVKTDRSDVSVLD--AIRSMSPDSDWASEGGDP 397

Query: 384 CLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP 443
           C+P   SW  V C+ +   RV  I L    + G +P  I  + AL  L L  N+L G +P
Sbjct: 398 CIPVLWSW--VNCSSTSPPRVTKIALSRKNLRGEIPPGINYMEALTELWLDDNELTGTLP 455

Query: 444 EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
           +M  L  L+ +HLENNQ  G +P  L+ LP L+E+ ++NN+  G+IP  L K
Sbjct: 456 DMSKLVNLKIMHLENNQLSGSLPPYLAHLPNLQELSIENNSFKGKIPSALLK 507

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LIG2|RLK6_ARATH Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/434 (30%), Positives = 203/434 (46%), Gaps = 28/434 (6%)

Query: 73  LRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAE 132
           LR+F +    + CY  NVTQ   YL++  + YG +DG   PP FD  +G   W  VD   
Sbjct: 86  LRYFPD--GFRNCYTLNVTQDTNYLIKAVFVYGNYDGLNNPPSFDLYLGPNLWVTVD-MN 142

Query: 133 DFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFAL 192
              NG  +  E++   +  SL VCL +    TS P I+ +EL  L ++ YNT      +L
Sbjct: 143 GRTNG--TIQEIIHKTISKSLQVCLVKTG--TSSPMINTLELRPLKNNTYNT---QSGSL 195

Query: 193 SSIARSSF-GDDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSI 251
               R  F G    I +PDD+ +RKW  F D     E    +N        P +  ++S 
Sbjct: 196 KYFFRYYFSGSGQNIRYPDDVNDRKWYPFFDAKEWTELTTNLNINSSNGYAPPEVVMASA 255

Query: 252 TT--TKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVT 309
           +T  +        W   P   +++Y+ ++F E +       R F V++NG   ++  +  
Sbjct: 256 STPISTFGTWNFSWLL-PSSTTQFYVYMHFAEIQTLRSLDTREFKVTLNGKLAYERYSPK 314

Query: 310 TNGVAVYGNEWPLSGQT-----NITMTPRNDMPVGPIISAGEIFQLLPL-AGTTFPRDVV 363
           T          P   +       +T TP++ +P  P+++A E+F ++      T P DV 
Sbjct: 315 TLATETIFYSTPQQCEDGTCLLELTKTPKSTLP--PLMNALEVFTVIDFPQMETNPDDVA 372

Query: 364 AMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTR---VVSIDLKGFEISGTLPE 420
           A++ +   +    I W GDPC+P +  W G+ CN   ++    V S++L    ++G + +
Sbjct: 373 AIKSIQSTYGLSKISWQGDPCVPKQFLWEGLNCNNLDNSTPPIVTSLNLSSSHLTGIIAQ 432

Query: 421 SIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
            I NLT L+ L L  N L G IPE +  + +L  ++L  N F G IPQ L Q   L+ I 
Sbjct: 433 GIQNLTHLQELDLSNNNLTGGIPEFLADIKSLLVINLSGNNFNGSIPQILLQKKGLKLIL 492

Query: 480 LQNNNLDGQIPDGL 493
             N NL    PDGL
Sbjct: 493 EGNANL--ICPDGL 504

Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW2|PAM74_ARATH Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana GN=PAM74 PE=2 SV=1

 Score =  166 bits (420), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 229/480 (47%), Gaps = 67/480 (13%)

Query: 44  LKFLPDKDFQFLGNTTTLK---QPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRT 100
           L+F  D +F   G +  ++   +   L   + LR+F E   R+ CY  +V +  KYL+R 
Sbjct: 51  LRFSSDAEFIQTGESGKIQASMENDYLKPYTRLRYFPE--ERRNCYSLSVDKNRKYLIRA 108

Query: 101 TYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARN 160
            + YG +DG    P+F+  +G   W+ +D  + F NG  +  E++     NSL+VCL + 
Sbjct: 109 RFIYGNYDGRNSNPIFELHLGPNLWATID-LQKFVNG--TMEEILHTPTSNSLNVCLVKT 165

Query: 161 NDTTSHPFISAIELSKLDDSLYNTT-DLNKFALSSIARSSFGDDARISFPDDLFNRKWNS 219
             TT  P ISA+EL  L ++ Y T   LN F    + ++    D  + +PDD+++R+W++
Sbjct: 166 GTTT--PLISALELRPLGNNSYLTDGSLNLFVRIYLNKT----DGFLRYPDDIYDRRWHN 219

Query: 220 F---KDLNPVEENKNKVNPEDFWNKPPAKAFLSSIT-TTKGKPLQIQWPPGPLPNSRYYI 275
           +    D   +       N  ++  +PP KA  ++ T +    PL I WPP   P  +YY+
Sbjct: 220 YFMVDDWTQIFTTLEVTNDNNY--EPPKKALAAAATPSNASAPLTISWPPDN-PGDQYYL 276

Query: 276 ALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQT-----NITM 330
             +F E +       R F++  +G    +       GV    N  P++ +       +  
Sbjct: 277 YSHFSEIQDLQTNDTREFDILWDGAVVEEGFIPPKLGVTTIHNLSPVTCKGENCIYQLIK 336

Query: 331 TPRNDMPVGPIISAGEIFQLLPLAGTTFPR------DVVAMEELAKHFKNPPIDWNGDPC 384
           T R+ +P   +++A EI+ ++      FPR      DVVA++ +   +K   I W GDPC
Sbjct: 337 TSRSTLP--SLLNALEIYTVI-----QFPRSETNENDVVAVKNIEAAYKLSRIRWQGDPC 389

Query: 385 LPWENSWTGVTCNK----SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWG 440
           +P + +W G+ C+     SK  RV+S++L    ++G +  +I NLT L            
Sbjct: 390 VPQKYAWDGLNCSNNTDVSKPPRVLSLNLSSSGLTGIIAAAIQNLTHL------------ 437

Query: 441 QIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNI 500
                      E L L NN   G +P+ L+Q+  L  I L  NNL G +P GL + GL +
Sbjct: 438 -----------EKLDLSNNTLTGVVPEFLAQMKSLVIINLSGNNLSGPLPQGLRREGLEL 486

Required for accurate photosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD8|Y1755_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 204/447 (45%), Gaps = 39/447 (8%)

Query: 44  LKFLPDKDFQFLGNTTTLKQPGLLPI---LSTLRFFTELQARKYCYVFNVTQGDKYLVRT 100
           L ++ D DF   G T  +++  L+ +    + LR+F +    + CY  NV Q   YL+R 
Sbjct: 50  LTYISDADFIQGGKTGNVQKDLLMKLRKPYTVLRYFPD--GIRNCYSLNVKQDTNYLIRV 107

Query: 101 TYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARN 160
            + YG +DG    P FD  +G   W+ +D  +   +G     E++     N L +CL + 
Sbjct: 108 MFRYGNYDGLNNSPRFDLYLGPNIWTTIDMGK---SGDGVLEEIIHITRSNILDICLVKT 164

Query: 161 NDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGD-DARISFPDDLFNRKWNS 219
              TS P IS+IEL  L   LY+T      +L +  R  F D +  I +P D+ +R W  
Sbjct: 165 G--TSTPMISSIELRPL---LYDTYIAQTGSLRNYNRFYFTDSNNYIRYPQDVHDRIWVP 219

Query: 220 --FKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIAL 277
               +   +  + + ++  D ++ P       ++      P+ I W        + Y  +
Sbjct: 220 LILPEWTHINTSHHVIDSIDGYDPPQDVLRTGAMPANASDPMTITWNLKT-ATDQVYGYI 278

Query: 278 YFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQ-----TNITMTP 332
           Y  E         R F V VN    F     T     V  N  PL+ +       +  TP
Sbjct: 279 YIAEIMEVQANETREFEVVVNNKVHFDPFRPTRFEAQVMFNNVPLTCEGGFCRLQLIKTP 338

Query: 333 RNDMPVGPIISAGEIFQLLPLAGTTFPR------DVVAMEELAKHFKNPPIDWNGDPCLP 386
           ++ +P  P+++A EIF      G  FP+      DV+A++ +   +    I W GDPC+P
Sbjct: 339 KSTLP--PLMNAFEIF-----TGIEFPQSETNQNDVIAVKNIQASYGLNRISWQGDPCVP 391

Query: 387 WENSWTGVTCN---KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP 443
            +  WTG++CN    S   R+V +DL    ++G +P SI NLT L+ L L  N L G++P
Sbjct: 392 KQFLWTGLSCNVIDVSTPPRIVKLDLSSSGLNGVIPPSIQNLTQLQELDLSQNNLTGKVP 451

Query: 444 E-MKTLTALETLHLENNQFEGWIPQTL 469
           E +  +  L  ++L  N+  G +PQ L
Sbjct: 452 EFLAKMKYLLVINLSGNKLSGLVPQAL 478

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SI06|Y5573_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g04300 OS=Arabidopsis thaliana GN=At2g04300 PE=3 SV=2

 Score =  162 bits (411), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 135/468 (28%), Positives = 218/468 (46%), Gaps = 35/468 (7%)

Query: 44  LKFLPDKDFQFLGNTTT----LKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVR 99
           L +  D DF   G T T    L+     PIL  LR+F E    + CY  NVT G  YL+R
Sbjct: 53  LTYTTDNDFVQSGKTGTIDKELESTYNKPILQ-LRYFPE--GVRNCYTLNVTLGTNYLIR 109

Query: 100 TTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLAR 159
            ++ YG +DG  +   FD  +G   W+ V+TA    NG+++  E++ +     L VCL +
Sbjct: 110 ASFVYGNYDGLNKELEFDLYLGPNLWANVNTAVYLMNGVTT-EEIIHSTKSKVLQVCLIK 168

Query: 160 NNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDAR-ISFPDDLFNRKWN 218
             +  S P I+++EL  L +  YNT      +L  + R+ F    R I +P+D+ +R W 
Sbjct: 169 TGE--SIPIINSLELRPLINDTYNT---QSGSLKYLFRNYFSTSRRIIRYPNDVNDRHWY 223

Query: 219 SFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITT--TKGKPLQIQWPPGPLPNSRYYIA 276
            F D +   E    +N        P K  ++S +T  +K  P    W   P   +++Y  
Sbjct: 224 PFFDEDAWTELTTNLNVNSSNGYDPPKFVMASASTPISKNAPFNFTWSLIP-STAKFYSY 282

Query: 277 LYFQENRAPSPESWRVFNVSVNGN---TFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPR 333
           ++F + +       R F++ +NGN     ++     T  +     +    GQ  I +   
Sbjct: 283 MHFADIQTLQANETREFDMMLNGNLALERYRPKTFATGTIYFIKPQICEGGQCIIELLKT 342

Query: 334 NDMPVGPIISAGEIFQLLPLAG-TTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWT 392
           +   + P+ SA E+F ++      T   DV+A++ +   +      W GDPC+P    W 
Sbjct: 343 SKSTLPPLCSALEVFTVIDFPELETNQDDVIAIKNIQNTYGVSKTSWQGDPCVPKRFMWD 402

Query: 393 GVTCNKSKHT---RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTL 448
           G+ CN S  +    +  ++L    ++G +  +I NLT L++L L  N L G +PE +  L
Sbjct: 403 GLNCNNSYISTPPTITFLNLSSSHLTGIIASAIQNLTHLQNLDLSNNNLTGGVPEFLAGL 462

Query: 449 TALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQI----PDG 492
            +L  ++L  N   G +PQTL Q   L+       NL+G I    PDG
Sbjct: 463 KSLLVINLSGNNLSGSVPQTLLQKKGLKL------NLEGNIYLNCPDG 504

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT5|Y5169_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1

 Score =  162 bits (409), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 127/420 (30%), Positives = 206/420 (49%), Gaps = 37/420 (8%)

Query: 73  LRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAE 132
           LR+F +    + CY  +V Q  +Y+++  + YG +DG    P FD  +G  KW  VD  E
Sbjct: 77  LRYFPD--GLRNCYTLDVLQNRRYMIKAVFVYGNYDGYNDYPSFDLYLGPNKWVRVDL-E 133

Query: 133 DFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFAL 192
              NG  S  E++     NSL +CL +  +  S PFISA+EL  L +  Y   D+   +L
Sbjct: 134 GKVNG--SVEEIIHIPSSNSLQICLVKTGN--SLPFISALELRLLRNDTYVVQDV---SL 186

Query: 193 SSIARSSFGDDAR-ISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSI 251
             + R  +    R I +PDD+++R W+ F  L    +    ++  +  N  P KA L+S 
Sbjct: 187 KHLFRRYYRQSDRLIRYPDDVYDRVWSPFF-LPEWTQITTSLDVNNSNNYEPPKAALTSA 245

Query: 252 TT--TKGKPLQIQWPPGPLPNSRYYIALYFQE--------NRAPSPESWRVFNVSVNGNT 301
            T    G  L I W     P+ + ++ ++F E        + A      R F   VNG  
Sbjct: 246 ATPGDNGTRLTIIWTLDN-PDEQIHLYVHFAELEPVGENTDEALRTLFTRTFYFVVNGKI 304

Query: 302 FFKD----LNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVG---PIISAGEIFQLLPLA 354
            + +    L++  + V    N+    G  ++ +  R++   G   P+++A E F  +   
Sbjct: 305 SYDESITPLDLAVSTVETVVNKCD-GGNCSLQLV-RSEASPGVRVPLVNAMEAFTAIKFP 362

Query: 355 GT-TFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTC---NKSKHTRVVSIDLK 410
            + T P DV++++ +   ++   +DW GDPCLP +  WTG+ C   N S   R++S+DL 
Sbjct: 363 HSETNPDDVISIKVIQATYELSRVDWQGDPCLPQQFLWTGLNCSYMNMSTSPRIISLDLS 422

Query: 411 GFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTL 469
             +++G +   I NLT L+ L L  NKL G +PE +  + +L  ++L NN   G IPQ L
Sbjct: 423 SHKLTGKIVPDIQNLTQLQKLDLSNNKLTGGVPEFLANMKSLLFINLSNNNLVGSIPQAL 482

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O81069|Y2899_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1

 Score =  160 bits (404), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 194/409 (47%), Gaps = 23/409 (5%)

Query: 72  TLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTA 131
           TLR+F E   ++ CY  +V +G  YL+  ++ YG +DG  + P FD  +G  KW  +D  
Sbjct: 77  TLRYFPE--GKRNCYSLDVKRGTTYLIVVSFVYGNYDGLNRDPNFDIHLGPNKWKRIDLD 134

Query: 132 EDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFA 191
            +      +  E++  A  NSL +CL +  +T   P ISAIE+  L ++ Y T   +   
Sbjct: 135 GEKE---GTREEIIHKARSNSLDICLVKTGETL--PIISAIEIRPLRNNTYVTQSGSLMM 189

Query: 192 LSSIARSSFGDDARISFPDDLFNRKWNSFKDLNPVEENKN-KVNPEDFWNKPPAKAFLSS 250
              +  S+   DA I + DD+ +R W+ F   +      +  +N  + +  P      ++
Sbjct: 190 SFRVYLSN--SDASIRYADDVHDRIWSPFNGSSHTHITTDLNINNSNAYEIPKNILQTAA 247

Query: 251 ITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTT 310
           I      PL I W P P+ N+  Y+ ++F E +       R F+V + GN      + T 
Sbjct: 248 IPRNASAPLIITWDPLPI-NAEVYLYMHFAEIQTLEANETRQFDVILRGNFNHSGFSPTK 306

Query: 311 NGVAVYGNEWPLSGQT-----NITMTPRNDMPVGPIISAGEIFQLLPLAG-TTFPRDVVA 364
             V     E P+   +      +  TP + +P  P+I+A E + ++  +   T   DV A
Sbjct: 307 LKVFTLYTEEPMKCGSEGCYLQLVKTPNSTLP--PLINAIEAYSVIEFSQLETSLSDVDA 364

Query: 365 MEELAKHFKNPPIDWNGDPCLPWENSWTGVTC---NKSKHTRVVSIDLKGFEISGTLPES 421
           ++ +   +K   I W GDPCLP + SW  + C   + S    ++S+DL    ++G++P+ 
Sbjct: 365 IKNIKNTYKLNKITWQGDPCLPQDLSWESIRCTYVDGSTSPTIISLDLSKSGLNGSIPQI 424

Query: 422 IGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTL 469
           + N T L+ L L  N L G +P  +  +  L  ++L  N   G +PQ L
Sbjct: 425 LQNFTQLQELDLSNNSLTGPVPIFLANMKTLSLINLSGNNLSGSVPQAL 473

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	501
255555467	521	serine-threonine protein kinase, plant-t	0.978	0.940	0.601	1e-172
359475372	511	PREDICTED: probable LRR receptor-like se	0.986	0.966	0.590	1e-171
297741287	520	unnamed protein product [Vitis vinifera]	0.940	0.905	0.606	1e-168
224105543	476	predicted protein [Populus trichocarpa]	0.944	0.993	0.616	1e-168
15230320	519	leucine-rich repeat-containing protein [	0.966	0.932	0.551	1e-159
9294625	499	unnamed protein product [Arabidopsis tha	0.966	0.969	0.551	1e-158
357475401	558	Receptor-like protein kinase [Medicago t	0.950	0.853	0.566	1e-157
356519701	479	PREDICTED: probable LRR receptor-like se	0.940	0.983	0.562	1e-156
449519290	508	PREDICTED: probable LRR receptor-like se	0.958	0.944	0.586	1e-156
449438414	516	PREDICTED: probable LRR receptor-like se	0.958	0.930	0.586	1e-155

>gi|255555467|ref|XP_002518770.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223542151|gb|EEF43695.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 297/494 (60%), Positives = 368/494 (74%), Gaps = 4/494 (0%)

Query: 1   MSLVIIFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTT 60
           MSL I FL    + PF A S P  +P+ F L+CG +  +T G LK++PD+ F  +GN ++
Sbjct: 1   MSLSI-FLFCLVTIPFSAHSLP--APRGFPLNCGASHEITQGNLKYIPDEGFISVGNKSS 57

Query: 61  LKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQII 120
           +  PGLLP+LSTLR+F + +ARKYCY F   +G KYLVRTTYYYG FDGG +PPVFDQII
Sbjct: 58  INTPGLLPLLSTLRYFPDKKARKYCYEFPTVKGGKYLVRTTYYYGSFDGGKEPPVFDQII 117

Query: 121 GGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDS 180
            GTKWS V+T ED  NGLS+YYE++V +    LSVCLARN  TTS PFISA+EL  LDDS
Sbjct: 118 QGTKWSTVNTTEDHVNGLSTYYEIIVLSTSKILSVCLARNKHTTSSPFISALELEYLDDS 177

Query: 181 LYNTTDLNKFALSSIARSSFGDDARI-SFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFW 239
           +YN+TD +KFAL+++AR  FG    I  +PDD FNR W  F D N + E+ + V   DFW
Sbjct: 178 MYNSTDFSKFALTTLARHDFGSRGNIIGYPDDQFNRFWQPFMDKNVIVESHSSVTSLDFW 237

Query: 240 NKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNG 299
           N PP   F ++IT ++GK L++QWPP  LP S+YYIALYFQ+NR PSP SWRVF VS+NG
Sbjct: 238 NFPPEAVFKTAITASRGKTLKVQWPPISLPISKYYIALYFQDNRTPSPYSWRVFTVSLNG 297

Query: 300 NTFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFP 359
             F++DLNVT+ GV VY  EWPL+GQT IT+TP ++ PVGPII+AGEIFQ LPL+G T  
Sbjct: 298 KNFYEDLNVTSKGVTVYAREWPLAGQTAITLTPADNAPVGPIINAGEIFQFLPLSGRTLT 357

Query: 360 RDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLP 419
           RDV+AME+LA+ F NPP DW+GDPCLP +NSWTGV C++ K  RVVS+DL G  ISG++P
Sbjct: 358 RDVIAMEDLARSFDNPPPDWSGDPCLPPKNSWTGVACSRDKLARVVSLDLTGMGISGSIP 417

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
            SIGNL+A+ HL LG NKL+G IP+M  L  L+TLHL+NNQ EG IPQ+L QL  L EIF
Sbjct: 418 SSIGNLSAITHLWLGENKLYGSIPDMSALKDLQTLHLDNNQLEGTIPQSLGQLKGLHEIF 477

Query: 480 LQNNNLDGQIPDGL 493
           LQNNNL G+IP  L
Sbjct: 478 LQNNNLTGKIPSSL 491

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475372|ref|XP_002282141.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720-like [Vitis vinifera]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/498 (59%), Positives = 373/498 (74%), Gaps = 4/498 (0%)

Query: 6   IFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPG 65
           IFLL   + P    + P  +P+  LL+CG T  + T  LKF+ D+ F  +GN++TLK P 
Sbjct: 5   IFLLSLVTIPLSLHAIP--APRGVLLNCGSTKDIVTTNLKFITDEGFISVGNSSTLKTPD 62

Query: 66  LLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKW 125
           L PILSTLR+F +  A+KYCYV  V +G KYL+RTTYYYGGFDGG +PPVF+QII GTKW
Sbjct: 63  LFPILSTLRYFPDKSAKKYCYVIPVIKGGKYLIRTTYYYGGFDGGNEPPVFEQIIDGTKW 122

Query: 126 SIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTT 185
            IV+T ED+A GL+SYYE+VVAA+G +LSVCLARN  T S PFI+A+EL  ++ S+YN+T
Sbjct: 123 GIVNTTEDYAKGLTSYYEIVVAAMGKTLSVCLARNGKTVSSPFITALELENMEASVYNST 182

Query: 186 DLNKFALSSIARSSFG-DDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPA 244
           D  K+AL+ +AR SFG +D  + FPDD +NR W  F D NP+ E+ + +   DFWN PP 
Sbjct: 183 DFTKYALNVVARHSFGSNDDIVCFPDDPYNRFWQPFMDNNPIVESHSNITSSDFWNTPPL 242

Query: 245 KAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFK 304
           K F S+ITT++GK LQ+QWP  PLP+S+YYI+LYFQ+NR PSP SWRVF+VSVNG  FF 
Sbjct: 243 KVFKSAITTSRGKTLQLQWPTEPLPSSKYYISLYFQDNRTPSPFSWRVFSVSVNGKNFFT 302

Query: 305 DLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVA 364
           +LNVTT+GV VYG +WPLSG T I MTP  D+PVGP+I+AGEIFQ+LPL G T  RDV+ 
Sbjct: 303 NLNVTTDGVMVYGTQWPLSGLTEIVMTPGADIPVGPVINAGEIFQMLPLGGRTLTRDVMG 362

Query: 365 MEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGN 424
           ME+LA+ F NPP DW+GDPCLP  NSWTGVTC   K  RVV+++L  F+++G+L  SI N
Sbjct: 363 MEDLARGFNNPPSDWSGDPCLPQNNSWTGVTCTTGKLARVVTLNLTNFDLAGSLSPSIAN 422

Query: 425 LTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNN 484
           LT L HL LGGNKL G IPEM TL  L+TLHLE+N FEG  P++L Q+  L+EI++QNNN
Sbjct: 423 LTGLTHLWLGGNKLSGPIPEMSTLNELQTLHLEDNGFEGSFPRSLDQVTSLQEIYVQNNN 482

Query: 485 LDGQIPDGLWKP-GLNIQ 501
           L+G IP  L K  G+N++
Sbjct: 483 LNGTIPGTLQKRLGINLK 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741287|emb|CBI32418.3| unnamed protein product [Vitis vinifera]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 287/473 (60%), Positives = 361/473 (76%), Gaps = 2/473 (0%)

Query: 30  LLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFN 89
           LL+CG T  + T  LKF+ D+ F  +GN++TLK P L PILSTLR+F +  A+KYCYV  
Sbjct: 21  LLNCGSTKDIVTTNLKFITDEGFISVGNSSTLKTPDLFPILSTLRYFPDKSAKKYCYVIP 80

Query: 90  VTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAV 149
           V +G KYL+RTTYYYGGFDGG +PPVF+QII GTKW IV+T ED+A GL+SYYE+VVAA+
Sbjct: 81  VIKGGKYLIRTTYYYGGFDGGNEPPVFEQIIDGTKWGIVNTTEDYAKGLTSYYEIVVAAM 140

Query: 150 GNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFG-DDARISF 208
           G +LSVCLARN  T S PFI+A+EL  ++ S+YN+TD  K+AL+ +AR SFG +D  + F
Sbjct: 141 GKTLSVCLARNGKTVSSPFITALELENMEASVYNSTDFTKYALNVVARHSFGSNDDIVCF 200

Query: 209 PDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPL 268
           PDD +NR W  F D NP+ E+ + +   DFWN PP K F S+ITT++GK LQ+QWP  PL
Sbjct: 201 PDDPYNRFWQPFMDNNPIVESHSNITSSDFWNTPPLKVFKSAITTSRGKTLQLQWPTEPL 260

Query: 269 PNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTNI 328
           P+S+YYI+LYFQ+NR PSP SWRVF+VSVNG  FF +LNVTT+GV VYG +WPLSG T I
Sbjct: 261 PSSKYYISLYFQDNRTPSPFSWRVFSVSVNGKNFFTNLNVTTDGVMVYGTQWPLSGLTEI 320

Query: 329 TMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWE 388
            MTP  D+PVGP+I+AGEIFQ+LPL G T  RDV+ ME+LA+ F NPP DW+GDPCLP  
Sbjct: 321 VMTPGADIPVGPVINAGEIFQMLPLGGRTLTRDVMGMEDLARGFNNPPSDWSGDPCLPQN 380

Query: 389 NSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTL 448
           NSWTGVTC   K  RVV+++L  F+++G+L  SI NLT L HL LGGNKL G IPEM TL
Sbjct: 381 NSWTGVTCTTGKLARVVTLNLTNFDLAGSLSPSIANLTGLTHLWLGGNKLSGPIPEMSTL 440

Query: 449 TALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKP-GLNI 500
             L+TLHLE+N FEG  P++L Q+  L+EI++QNNNL+G IP  L K  G+N+
Sbjct: 441 NELQTLHLEDNGFEGSFPRSLDQVTSLQEIYVQNNNLNGTIPGTLQKRLGINL 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105543|ref|XP_002313850.1| predicted protein [Populus trichocarpa] gi|222850258|gb|EEE87805.1| predicted protein [Populus trichocarpa]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 293/475 (61%), Positives = 372/475 (78%), Gaps = 2/475 (0%)

Query: 29  FLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVF 88
           F L+CG +  +T G LK++PDK F  +GN + +K   +LP+LSTLRFF +  A+KYCYV 
Sbjct: 2   FQLNCGASEDITHGNLKYIPDKGFISVGNKSAIKTADVLPVLSTLRFFPDTSAKKYCYVL 61

Query: 89  NVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAA 148
            V +G KYLVRTTYYYGG+DGG +PPVFDQII GTKWS V+T ED+ANG+SSYYE++VA+
Sbjct: 62  PVIKGGKYLVRTTYYYGGYDGGKEPPVFDQIIQGTKWSTVNTTEDYANGMSSYYEIIVAS 121

Query: 149 VGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFG-DDARIS 207
           +  +LSVCLARN  TTS PFISA+E+  L +S+YN+TD +K+AL ++AR +FG D+  I 
Sbjct: 122 LAKTLSVCLARNVHTTSSPFISALEIEYLGNSVYNSTDFSKYALVTVARDNFGADEEIIG 181

Query: 208 FPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGP 267
           FPDD FNR W  + D NPV E +N ++  +FWN PP +AF S+ITT++GK ++IQWPP  
Sbjct: 182 FPDDQFNRLWQPYIDQNPVVECQNNISSSEFWNFPPQRAFASAITTSRGKTIKIQWPPVS 241

Query: 268 LPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTN 327
           LP+++YYIALYFQ+NR PSP SWRVF+VS+NG  F+KDLNVT NGV VYG+EWPLSGQT 
Sbjct: 242 LPSTKYYIALYFQDNRTPSPYSWRVFSVSINGQNFYKDLNVTANGVTVYGSEWPLSGQTE 301

Query: 328 ITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPW 387
           IT+TP N++PVGP+I+AGEI+ +LPL G T  RDV+AME LA+ F NPP DW+GDPCLP 
Sbjct: 302 ITLTPGNNIPVGPVINAGEIYHILPLGGRTLTRDVMAMENLARRFVNPPSDWSGDPCLPP 361

Query: 388 ENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKT 447
           ENSWTGV C++ K  RVV+++L    ISG+LP S+ NLTA+ H+ LGGNKL G IP + T
Sbjct: 362 ENSWTGVKCSQDKLARVVALNLTSMGISGSLPSSLANLTAVTHIWLGGNKLSGSIPNLST 421

Query: 448 LTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGLNIQ 501
           L  L+TLHLENN+ EG IPQ+L QL  L E+FLQNNNLDG++PD L  K GLNIQ
Sbjct: 422 LKELQTLHLENNKLEGTIPQSLGQLGQLHELFLQNNNLDGRVPDSLRNKKGLNIQ 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230320|ref|NP_188554.1| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|332642690|gb|AEE76211.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/488 (55%), Positives = 359/488 (73%), Gaps = 4/488 (0%)

Query: 18  ALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFT 77
           ++S     P+ F L+CG +       +++ PD+ F  +GNTTT+KQ  L+PILSTLR+F 
Sbjct: 12  SISHALPPPRGFFLNCGSSSSTNLNEIEYTPDEGFISVGNTTTIKQKDLVPILSTLRYFP 71

Query: 78  ELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANG 137
           +  +RK+CY F V +  KYL+RTTYYYG FDG   PPVFDQIIGGTKWS+V+T+ED+A G
Sbjct: 72  DKSSRKHCYNFPVAKTSKYLIRTTYYYGNFDGKNNPPVFDQIIGGTKWSVVNTSEDYAKG 131

Query: 138 LSSYYEVVVAAVGNSLSVCLARNNDT-TSHPFISAIELSKLDDSLYNTTDLNKFALSSIA 196
            SSYYE++V   GN LSVCLA+N  T +S PFIS++++  L+D++YN+TDL  + LS IA
Sbjct: 132 QSSYYEIIVGVPGNRLSVCLAKNAHTLSSSPFISSLDVQSLEDTMYNSTDLGSYKLSLIA 191

Query: 197 RSSFGDDARI-SFPDDLFNRKWNSFKDLNPVE-ENKNKVNPEDFWNKPPAKAFLSSITTT 254
           R+SFG D  I S+PDD +NR W  F D   +   +++++NP +FWN PPA+AF+   T +
Sbjct: 192 RNSFGGDGEIISYPDDKYNRLWQPFSDQKHLTVTSRSRINPSNFWNIPPAEAFVEGFTAS 251

Query: 255 KGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVA 314
           KGKPL++QWPP PLP ++YY+ALYFQ+NR+P P SWR F+VSVNG +F + LNV+TNGV 
Sbjct: 252 KGKPLELQWPPFPLPATKYYVALYFQDNRSPGPMSWRAFDVSVNGLSFLRKLNVSTNGVM 311

Query: 315 VYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKN 374
           VY  +WPLSGQT IT+TP  D PVGP I+AGE+FQ+LPL GTT  +D +AME+L +    
Sbjct: 312 VYSGQWPLSGQTQITLTPAKDAPVGPFINAGEVFQILPLGGTTNIKDAIAMEDLLESIMK 371

Query: 375 PPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLG 434
           PP+DW+GDPCLP  NSWTG+TC+K K  RV+S++L    +SG+LP SI  +TALK L LG
Sbjct: 372 PPVDWSGDPCLPRANSWTGLTCSKDKIARVISLNLTNLGLSGSLPPSINKMTALKDLWLG 431

Query: 435 GNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494
            NKL G IP++  +T LETLHLE+NQF G IP++L++LP LR + ++NN L G IP  L 
Sbjct: 432 KNKLTGPIPDLSPMTRLETLHLEDNQFTGAIPESLAKLPSLRTLSIKNNKLKGTIPSVLL 491

Query: 495 -KPGLNIQ 501
            + GL IQ
Sbjct: 492 QRKGLTIQ 499

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294625|dbj|BAB02964.1| unnamed protein product [Arabidopsis thaliana]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/488 (55%), Positives = 359/488 (73%), Gaps = 4/488 (0%)

Query: 18  ALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFT 77
           ++S     P+ F L+CG +       +++ PD+ F  +GNTTT+KQ  L+PILSTLR+F 
Sbjct: 12  SISHALPPPRGFFLNCGSSSSTNLNEIEYTPDEGFISVGNTTTIKQKDLVPILSTLRYFP 71

Query: 78  ELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANG 137
           +  +RK+CY F V +  KYL+RTTYYYG FDG   PPVFDQIIGGTKWS+V+T+ED+A G
Sbjct: 72  DKSSRKHCYNFPVAKTSKYLIRTTYYYGNFDGKNNPPVFDQIIGGTKWSVVNTSEDYAKG 131

Query: 138 LSSYYEVVVAAVGNSLSVCLARNNDT-TSHPFISAIELSKLDDSLYNTTDLNKFALSSIA 196
            SSYYE++V   GN LSVCLA+N  T +S PFIS++++  L+D++YN+TDL  + LS IA
Sbjct: 132 QSSYYEIIVGVPGNRLSVCLAKNAHTLSSSPFISSLDVQSLEDTMYNSTDLGSYKLSLIA 191

Query: 197 RSSFGDDARI-SFPDDLFNRKWNSFKDLNPVE-ENKNKVNPEDFWNKPPAKAFLSSITTT 254
           R+SFG D  I S+PDD +NR W  F D   +   +++++NP +FWN PPA+AF+   T +
Sbjct: 192 RNSFGGDGEIISYPDDKYNRLWQPFSDQKHLTVTSRSRINPSNFWNIPPAEAFVEGFTAS 251

Query: 255 KGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVA 314
           KGKPL++QWPP PLP ++YY+ALYFQ+NR+P P SWR F+VSVNG +F + LNV+TNGV 
Sbjct: 252 KGKPLELQWPPFPLPATKYYVALYFQDNRSPGPMSWRAFDVSVNGLSFLRKLNVSTNGVM 311

Query: 315 VYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKN 374
           VY  +WPLSGQT IT+TP  D PVGP I+AGE+FQ+LPL GTT  +D +AME+L +    
Sbjct: 312 VYSGQWPLSGQTQITLTPAKDAPVGPFINAGEVFQILPLGGTTNIKDAIAMEDLLESIMK 371

Query: 375 PPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLG 434
           PP+DW+GDPCLP  NSWTG+TC+K K  RV+S++L    +SG+LP SI  +TALK L LG
Sbjct: 372 PPVDWSGDPCLPRANSWTGLTCSKDKIARVISLNLTNLGLSGSLPPSINKMTALKDLWLG 431

Query: 435 GNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494
            NKL G IP++  +T LETLHLE+NQF G IP++L++LP LR + ++NN L G IP  L 
Sbjct: 432 KNKLTGPIPDLSPMTRLETLHLEDNQFTGAIPESLAKLPSLRTLSIKNNKLKGTIPSVLL 491

Query: 495 -KPGLNIQ 501
            + GL IQ
Sbjct: 492 QRKGLTIQ 499

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475401|ref|XP_003607986.1| Receptor-like protein kinase [Medicago truncatula] gi|355509041|gb|AES90183.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 271/478 (56%), Positives = 344/478 (71%), Gaps = 2/478 (0%)

Query: 6   IFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPG 65
           +FLL+  + P  A S P+ +P  + L+CG +  +T   LK+ PD  +  LG   T+ +  
Sbjct: 16  VFLLFLVTVPLLAHSAPS-NPLGYFLNCGGSNEVTVDSLKYTPDGSYTKLGTVATINKTD 74

Query: 66  LLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKW 125
           LLP LSTLR+F    ++K+CY F V +G+KYLV+T YYYG FDGG +PPVFDQI+ GT W
Sbjct: 75  LLPTLSTLRYFPNTASKKFCYSFPVIKGNKYLVKTIYYYGEFDGGKKPPVFDQIVEGTTW 134

Query: 126 SIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTS-HPFISAIELSKLDDSLYNT 184
           S VDT ED+A GLSSYYEVVV   G  LSVCL RN  T S  PFISA+E+  LD SLYN 
Sbjct: 135 STVDTTEDYAKGLSSYYEVVVMPHGKKLSVCLGRNEHTGSLSPFISALEVKSLDGSLYNP 194

Query: 185 TDLNKFALSSIARSSFGDDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPA 244
           TD NK+AL S++R +FG +  ISFPDD FNR W  FKD NPV  +++ +   DFWN PP 
Sbjct: 195 TDFNKYALVSVSRHTFGSEDAISFPDDKFNRMWQPFKDQNPVVASQSNITSSDFWNLPPV 254

Query: 245 KAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFK 304
           KAF S ITT+KGK L+IQWPP  LP++ YYI+LYFQ+NR PSP SWR F+VS+NG+TF+ 
Sbjct: 255 KAFSSGITTSKGKALEIQWPPLYLPSTYYYISLYFQDNRHPSPFSWRTFDVSINGHTFYS 314

Query: 305 DLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVA 364
           +LN T+ GV VY  +WPLSG T ITMTP   MPVGP+++AGE++Q+LPL G T  RD++ 
Sbjct: 315 NLNATSKGVTVYAAQWPLSGLTKITMTPSPGMPVGPMLNAGEVYQILPLGGRTQTRDIIT 374

Query: 365 MEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGN 424
           ME+LA+  +NPP DWNGDPC P ENSWTGVTC+     R+  ++L    + GTLP SIG+
Sbjct: 375 MEDLARSIQNPPRDWNGDPCRPKENSWTGVTCSSQFVARITVVNLTNAGLVGTLPPSIGH 434

Query: 425 LTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482
           LTAL HL LGGNKL G IP++  L  LETLHLENN+FEG +P +  +LP LRE++LQ+
Sbjct: 435 LTALSHLWLGGNKLTGTIPDLSGLKELETLHLENNKFEGKLPPSTEKLPKLREMWLQH 492

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519701|ref|XP_003528508.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51810-like [Glycine max]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/473 (56%), Positives = 344/473 (72%), Gaps = 2/473 (0%)

Query: 6   IFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPG 65
           +FLLW       A S   + P  + L CG T  +T   L ++PD+ +  +G TTT+ +P 
Sbjct: 5   VFLLWLVIISVLAHSALASIPLAYFLDCGGTKEVTVDNLTYIPDESYIKVGKTTTINKPD 64

Query: 66  LLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDG-GTQPPVFDQIIGGTK 124
           LLPILSTLR+F +  A+KYCY   V +G KYLV+T YYYGGFDG   QPPVFDQII GT+
Sbjct: 65  LLPILSTLRYFPDTSAKKYCYSLPVIKGSKYLVKTMYYYGGFDGRNKQPPVFDQIIEGTR 124

Query: 125 WSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTT-SHPFISAIELSKLDDSLYN 183
           WS+V+T ED+A GLSSY+++VV   G +LSVCLARN  T  + PFISA+E+ +LD S YN
Sbjct: 125 WSVVNTTEDYAKGLSSYFDIVVVPSGKTLSVCLARNAHTGGASPFISALEVKRLDASFYN 184

Query: 184 TTDLNKFALSSIARSSFGDDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPP 243
            TD NK+AL ++AR +FG +  ISFPDD  NR W  +KD N V E+ + V   DFWN+PP
Sbjct: 185 PTDFNKYALLTVARHAFGAEDIISFPDDKLNRMWQPYKDQNLVVESHSNVTSSDFWNQPP 244

Query: 244 AKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFF 303
            KAF S++TT++GK L+IQWPP  LP++ YYI+LYFQ+NR PSP SWR+F+VS+NG+TFF
Sbjct: 245 VKAFSSAMTTSRGKTLEIQWPPMSLPSTYYYISLYFQDNRNPSPYSWRIFDVSINGHTFF 304

Query: 304 KDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVV 363
             LN TT GV VY  +WPLSGQT IT+TP + +PVGP+I+AGEI+Q+LPL G T  RDV+
Sbjct: 305 SSLNATTKGVTVYAAKWPLSGQTKITLTPGSGIPVGPVINAGEIYQVLPLGGRTHTRDVI 364

Query: 364 AMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIG 423
           AME+LA+  +NPP DW+GDPCLP  NSWTGVTC+   H RV +++L    +SG+LP ++G
Sbjct: 365 AMEDLARSIQNPPADWHGDPCLPKGNSWTGVTCSNGFHARVTTLNLTNAGVSGSLPPTLG 424

Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            L+AL+HL LG NKL G IP++  L  LETLHLE N FEG +P +  +LP LR
Sbjct: 425 RLSALEHLWLGENKLSGTIPDLSGLKELETLHLEKNNFEGPLPPSTKKLPKLR 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519290|ref|XP_004166668.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51810-like [Cucumis sativus]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/488 (58%), Positives = 366/488 (75%), Gaps = 8/488 (1%)

Query: 20  SQPTTSPQDFLLSCG---DTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFF 76
           SQP   P+ +LL+CG    T  +T G L+++ D+ F  +GNTT L  P L+PILSTLR+F
Sbjct: 22  SQPL--PRGYLLNCGATESTAKVTVGSLQYITDEGFISVGNTTKLLDPNLVPILSTLRYF 79

Query: 77  TELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFAN 136
            +  ARKYCY   V +G KY+VRTTYYYGG+DGGT PPVFDQI+ GTKWSIV+T +D+AN
Sbjct: 80  PDKSARKYCYSIPVVKGGKYIVRTTYYYGGYDGGTVPPVFDQIVEGTKWSIVNTTDDYAN 139

Query: 137 GLSSYYEVVVAAVGNSLSVCLARNN--DTTSHPFISAIELSKLDDSLYNTTDLNKFALSS 194
           G+SSYYE VV A+G  +SVCLARN   D++S PFISA+EL  L+DS+YNTTD    ALS 
Sbjct: 140 GMSSYYEAVVVAMGKMMSVCLARNQHTDSSSSPFISALELEYLEDSVYNTTDFKNHALSL 199

Query: 195 IARSSFG-DDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITT 253
           +AR+SFG DD  I FPDD FNR+W+ F D NP+      V    FWN PPAKAF +++TT
Sbjct: 200 VARTSFGHDDDVIGFPDDAFNRQWHPFVDENPLVTCHANVTSSTFWNLPPAKAFNTALTT 259

Query: 254 TKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGV 313
           ++GK L++ WPP  LP + YY++LYFQ+NR+PSP SWRVF+V+VNG  FF +LNVT NGV
Sbjct: 260 SRGKSLKVNWPPFSLPAAYYYVSLYFQDNRSPSPYSWRVFSVAVNGKNFFTNLNVTANGV 319

Query: 314 AVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFK 373
           +VY  +WPLSGQT++ + P + +PVGP+I+A EI Q+  L+G T  RDV+AMEELA+ F 
Sbjct: 320 SVYSAKWPLSGQTHLELIPADGVPVGPVINAAEILQVFRLSGRTLTRDVMAMEELARSFN 379

Query: 374 NPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRL 433
           NPP DW+GDPCLP +NSWTGVTC+  K  RVV+++L  F +SG LP SI NLTAL HL L
Sbjct: 380 NPPHDWSGDPCLPKDNSWTGVTCSDGKLARVVNLNLTNFGLSGALPSSINNLTALTHLWL 439

Query: 434 GGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           G NKL G IPEM +L  L+TLHLE NQFEG IP++LS+LP +REIFLQNN+L  +  + L
Sbjct: 440 GSNKLSGFIPEMGSLKELQTLHLEKNQFEGPIPRSLSKLPHIREIFLQNNDLKSKALEVL 499

Query: 494 WKPGLNIQ 501
            K G++++
Sbjct: 500 QKRGIHVE 507

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438414|ref|XP_004136983.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51810-like [Cucumis sativus]

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/488 (58%), Positives = 366/488 (75%), Gaps = 8/488 (1%)

Query: 20  SQPTTSPQDFLLSCG---DTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFF 76
           SQP   P+ +LL+CG    T  +T G L+++ D+ F  +GNTT L  P L+PILSTLR+F
Sbjct: 30  SQPL--PRGYLLNCGATESTAKVTVGSLQYITDEGFISVGNTTKLLDPNLVPILSTLRYF 87

Query: 77  TELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFAN 136
            +  ARKYCY   V +G KY+VRTTYYYGG+DGGT PPVFDQI+ GTKWSIV+T +D+AN
Sbjct: 88  PDKSARKYCYSIPVVKGGKYIVRTTYYYGGYDGGTVPPVFDQIVEGTKWSIVNTTDDYAN 147

Query: 137 GLSSYYEVVVAAVGNSLSVCLARNN--DTTSHPFISAIELSKLDDSLYNTTDLNKFALSS 194
           G+SSYYE VV A+G  +SVCLARN   D++S PFISA+EL  L+DS+YNTTD    ALS 
Sbjct: 148 GMSSYYEAVVVAMGKMMSVCLARNQHTDSSSSPFISALELEYLEDSVYNTTDFKNHALSL 207

Query: 195 IARSSFG-DDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITT 253
           +AR+SFG DD  I FPDD FNR+W+ F D NP+      V    FWN PPAKAF +++TT
Sbjct: 208 VARTSFGHDDDVIGFPDDAFNRQWHPFVDENPLVTCHANVTSSTFWNLPPAKAFNTALTT 267

Query: 254 TKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGV 313
           ++GK L++ WPP  LP + YY++LYFQ+NR+PSP SWRVF+V+VNG  FF +LNVT NGV
Sbjct: 268 SRGKSLKVNWPPFSLPAAYYYVSLYFQDNRSPSPYSWRVFSVAVNGKNFFTNLNVTANGV 327

Query: 314 AVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFK 373
           +VY  +WPLSGQT++ + P + +PVGP+I+A EI Q+  L+G T  RDV+AMEELA+ F 
Sbjct: 328 SVYSAKWPLSGQTHLELIPADGVPVGPVINAAEILQVFRLSGRTLTRDVMAMEELARSFN 387

Query: 374 NPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRL 433
           NPP DW+GDPCLP +NSWTGVTC+  K  RVV+++L  F +SG LP SI NLTAL HL L
Sbjct: 388 NPPHDWSGDPCLPKDNSWTGVTCSDGKLARVVNLNLTNFGLSGALPSSINNLTALTHLWL 447

Query: 434 GGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           G NKL G IPEM +L  L+TLHLE NQFEG IP++LS+LP +REIFLQNN+L  +  + L
Sbjct: 448 GSNKLSGFIPEMGSLKELQTLHLEKNQFEGPIPRSLSKLPHIREIFLQNNDLKSKALEVL 507

Query: 494 WKPGLNIQ 501
            K G++++
Sbjct: 508 QKRGIHVE 515

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	501
TAIR|locus:2094103	519	AT3G19230 [Arabidopsis thalian	0.984	0.949	0.531	5e-147
TAIR|locus:2083023	517	AT3G05990 [Arabidopsis thalian	0.994	0.963	0.435	3.8e-110
TAIR|locus:2057991	934	AT2G37050 [Arabidopsis thalian	0.952	0.510	0.304	1.9e-45
TAIR|locus:2055160	886	AT2G14440 [Arabidopsis thalian	0.866	0.489	0.297	4.1e-44
TAIR|locus:2055165	868	AT2G14510 [Arabidopsis thalian	0.858	0.495	0.289	1.5e-41
TAIR|locus:2059804	892	AT2G04300 [Arabidopsis thalian	0.872	0.489	0.280	4.7e-38
TAIR|locus:2078196	871	AT3G46350 [Arabidopsis thalian	0.508	0.292	0.313	2.5e-37
TAIR|locus:2148151	866	AT5G16900 [Arabidopsis thalian	0.794	0.459	0.299	5.2e-37
TAIR|locus:2066158	884	AT2G28990 [Arabidopsis thalian	0.822	0.466	0.275	1.1e-36
TAIR|locus:2024987	864	AT1G07550 [Arabidopsis thalian	0.822	0.476	0.279	2.9e-36

TAIR|locus:2094103 AT3G19230 [Arabidopsis thaliana (taxid:3702)]

 Score = 1436 (510.6 bits), Expect = 5.0e-147, P = 5.0e-147
 Identities = 264/497 (53%), Positives = 355/497 (71%)

Query:     9 LWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLP 68
             L+FF    F++S     P+ F L+CG +       +++ PD+ F  +GNTTT+KQ  L+P
Sbjct:     3 LFFFLLLCFSISHALPPPRGFFLNCGSSSSTNLNEIEYTPDEGFISVGNTTTIKQKDLVP 62

Query:    69 ILSTLRFFTELQARKYCYVFNVTQGDKYLVRXXXXXXXXXXXXQPPVFDQIIGGTKWSIV 128
             ILSTLR+F +  +RK+CY F V +  KYL+R             PPVFDQIIGGTKWS+V
Sbjct:    63 ILSTLRYFPDKSSRKHCYNFPVAKTSKYLIRTTYYYGNFDGKNNPPVFDQIIGGTKWSVV 122

Query:   129 DTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDT-TSHPFISAIELSKLDDSLYNTTDL 187
             +T+ED+A G SSYYE++V   GN LSVCLA+N  T +S PFIS++++  L+D++YN+TDL
Sbjct:   123 NTSEDYAKGQSSYYEIIVGVPGNRLSVCLAKNAHTLSSSPFISSLDVQSLEDTMYNSTDL 182

Query:   188 NKFALSSIARSSFGDDARI-SFPDDLFNRKWNSFKDLNPVE-ENKNKVNPEDFWNKPPAK 245
               + LS IAR+SFG D  I S+PDD +NR W  F D   +   +++++NP +FWN PPA+
Sbjct:   183 GSYKLSLIARNSFGGDGEIISYPDDKYNRLWQPFSDQKHLTVTSRSRINPSNFWNIPPAE 242

Query:   246 AFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKD 305
             AF+   T +KGKPL++QWPP PLP ++YY+ALYFQ+NR+P P SWR F+VSVNG +F + 
Sbjct:   243 AFVEGFTASKGKPLELQWPPFPLPATKYYVALYFQDNRSPGPMSWRAFDVSVNGLSFLRK 302

Query:   306 LNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAM 365
             LNV+TNGV VY  +WPLSGQT IT+TP  D PVGP I+AGE+FQ+LPL GTT  +D +AM
Sbjct:   303 LNVSTNGVMVYSGQWPLSGQTQITLTPAKDAPVGPFINAGEVFQILPLGGTTNIKDAIAM 362

Query:   366 EELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNL 425
             E+L +    PP+DW+GDPCLP  NSWTG+TC+K K  RV+S++L    +SG+LP SI  +
Sbjct:   363 EDLLESIMKPPVDWSGDPCLPRANSWTGLTCSKDKIARVISLNLTNLGLSGSLPPSINKM 422

Query:   426 TALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
             TALK L LG NKL G IP++  +T LETLHLE+NQF G IP++L++LP LR + ++NN L
Sbjct:   423 TALKDLWLGKNKLTGPIPDLSPMTRLETLHLEDNQFTGAIPESLAKLPSLRTLSIKNNKL 482

Query:   486 DGQIPDGLW-KPGLNIQ 501
              G IP  L  + GL IQ
Sbjct:   483 KGTIPSVLLQRKGLTIQ 499

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083023 AT3G05990 [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 221/508 (43%), Positives = 312/508 (61%)

Query:     1 MSLVIIFLLWFFSSPFFALSQPTTSPQDFLLSCG-DTVGLTTGRLKFLPDKDFQFLGNTT 59
             MS +++ LL  FS    +LSQP+  P   L+ CG  +  +  GR ++ PD+ F   G   
Sbjct:     1 MSPLLLLLLTVFSLLSSSLSQPSP-PSAILIDCGASSSSVIDGR-QWQPDETFVSSGTPK 58

Query:    60 TLKQPGLLPILSTLRFFT-ELQA--RKYCYVFNVTQGDKYLVRXXXXXXXXXXX-XQPPV 115
              +    L  IL T+R F   L     K+CYV +V++G KY++R              PPV
Sbjct:    59 NVSDQVLDEILFTVRSFPLSLDGTHHKFCYVMSVSRGWKYMIRTTYYYGGVNGKGTPPPV 118

Query:   116 FDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELS 175
             FDQI+ GT W IV+T  D+A+GL+SYYE V  A G S+SVC+A N+ TTS PFISA+EL 
Sbjct:   119 FDQIVDGTLWGIVNTTADYADGLASYYEGVFLAQGKSISVCVASNSYTTSDPFISALELV 178

Query:   176 KLDDSLYNTTDLNKFALSSIARSSFGDDARI-SFPDDLFNRKWNSFKDLNPVEENKNKVN 234
             +LD +LYN+TD     +S +AR +FG    I  FPDD F+R W  +  LN    N  K+ 
Sbjct:   179 RLDGTLYNSTDFTTVGMSLVARHAFGYSGPIIRFPDDQFDRFWEPYS-LNSTVPNNRKLE 237

Query:   235 PEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFN 294
                FWN PP++ F + +  T+ +PL+  WPP PL  + YYIALYF  +     +  RVF+
Sbjct:   238 VSGFWNLPPSRIFNTDLRATQVQPLEFTWPPMPLKMATYYIALYFAHDSDSMGDGSRVFD 297

Query:   295 VSVNGNTFFKDLNVTTNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQLLPLA 354
             VSVNG T++K+L+VT  G  ++ + WPL G T + ++PR+   + P+I+ GE+F+LL L 
Sbjct:   298 VSVNGITYYKELSVTPAGAVIFASRWPLEGLTTLALSPRSGSNLPPLINGGEMFELLSLG 357

Query:   355 GTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEI 414
             G T  RDV A+  +   FKN P DW+GDPCLP   SW+G++C++    RVV+++L    +
Sbjct:   358 GKTLVRDVTALNAIKNSFKNAPADWSGDPCLPKNYSWSGISCSEGPRIRVVALNLTNMGV 417

Query:   415 SGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPI 474
             SG+L  ++  LTAL  + LG N L G +P+  +L  LE+LH E+N F G IP +L  +P 
Sbjct:   418 SGSLAPAVAKLTALSSIWLGNNSLSGSLPDFSSLKRLESLHFEDNLFSGSIPSSLGGVPH 477

Query:   475 LREIFLQNNNLDGQIPDGLW-KPGLNIQ 501
             LRE+FLQNNNL GQ+P  L  KPGLN++
Sbjct:   478 LRELFLQNNNLTGQVPSNLLQKPGLNLR 505

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2057991 AT2G37050 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 1.9e-45, P = 1.9e-45
 Identities = 159/522 (30%), Positives = 238/522 (45%)

Query:     1 MSLVIIFLLWFFSSPFFALSQPTTSPQDFLLSCGDTVGLTTGR-LKFLPDKDFQFLGNTT 59
             +SL+++ LL   S+  F  S    +P    L CG     T    LK+ PD    + G T 
Sbjct:     4 ISLLLLCLL--VSTCLFT-SSSAQAPGFVSLDCGGAEPFTDELGLKWSPDNHLIY-GETA 59

Query:    60 TLKQPGLLPI-LSTLRFFTELQARKYCYVFNVTQGDKYLVRXXXXXXXXXXXXQP-PVFD 117
              +          +TLR F    +RKYCY  NVT  ++YL+R               P FD
Sbjct:    60 NISSVNETRTQYTTLRHFPA-DSRKYCYTLNVTSRNRYLIRATFLYGNFDNSNNVYPKFD 118

Query:   118 QIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKL 177
               +G T W+ +  +E +   +    E+V  A   ++SVCL+  N TT  PFIS +EL +L
Sbjct:   119 ISLGATHWATIVISETY---IIETAELVFLASSPTVSVCLS--NATTGQPFISTLELRQL 173

Query:   178 DDSLYNTT-DLNKFALSSIARSSFG--DDARISFPDDLFNRKWNSFKDLNP-----VEEN 229
               S+Y +    ++F LS  AR +FG   +A + +PDD ++R W S     P     V   
Sbjct:   174 SGSMYGSMLSEDRFYLSVAARINFGAESEASVRYPDDPYDRIWESDLQKKPNYLVDVAAG 233

Query:   230 KNKVN---PEDFW--NKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRA 284
               +V+   P +    ++PP K   +++  T G  L  +      P   +    YF E   
Sbjct:   234 TVRVSTTLPIESRVDDRPPQKVMQTAVVGTNGS-LTYRMNLDGFPGFGWAFT-YFAEIED 291

Query:   285 PSPESWRVFNVSVNGNTFFKD--LNVTTNG---VAVYGNEWP---LSGQTNITMTPRNDM 336
              + +  R F + +     +    +N+  N      VY   +P   L    N       D 
Sbjct:   292 LAEDESRKFRLVLPEQPEYSKSVVNIKENTQRPYRVYAPGYPNITLPFVLNFRFAKTADS 351

Query:   337 PVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDW---NGDPCLPWENSWTG 393
               GPI++A EI + L  +  +   D   M  +A  + +   +W    GDPC P  + W+ 
Sbjct:   352 SRGPILNAMEISKYLRKSDGSV--DATVMANVASLYSST--EWAQEGGDPCSP--SPWSW 405

Query:   394 VTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALET 453
             V CN     RVV+I L    ++G +P  +  LT L  L L GN   G IP+      LE 
Sbjct:   406 VQCNSDPQPRVVAIKLSSMNLTGNIPSDLVKLTGLVELWLDGNSFTGPIPDFSRCPNLEI 465

Query:   454 LHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
             +HLENN+  G IP +L++LP L+E++LQNN L G IP  L K
Sbjct:   466 IHLENNRLTGKIPSSLTKLPNLKELYLQNNVLTGTIPSDLAK 507

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2055160 AT2G14440 [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 4.1e-44, P = 4.1e-44
 Identities = 140/471 (29%), Positives = 216/471 (45%)

Query:    44 LKFLPDKDFQFLGNTTTLKQPGLLPILS----TLRFFTELQARKYCYVFNVTQGDKYLVR 99
             L ++ D +F   G T  +K    +   S     LR+F E    + CY  +V QG KYL+R
Sbjct:    50 LTYISDVNFVRGGKTGNIKNNSDIDFTSRPYKVLRYFPE--GIRNCYSLSVKQGTKYLIR 107

Query:   100 XXXXXXXXXXXXQPPVFDQIIGGTKWSIVDTAE-DFANGLSSYYEVVVAAVGNSLSVCLA 158
                           P FD  +G   W+ VD  + D  +G+    E++     N L +CL 
Sbjct:   108 TLFFYGNYDGLNTSPRFDLFLGPNIWTSVDVQKVDGGDGVIE--EIIHVTRCNILDICLV 165

Query:   159 RNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDAR-ISFPDDLFNRKW 217
             +   TT  P ISAIEL  L    Y+T      +L  I    F +  + + +P+D+++R W
Sbjct:   166 KTGTTT--PMISAIELRPLR---YDTYTARTGSLKKILHFYFTNSGKEVRYPEDVYDRVW 220

Query:   218 --NSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYI 275
               +S  +   +   +N     D +N P      +SI T   +PL   W      +   Y 
Sbjct:   221 IPHSQPEWTQINTTRNVSGFSDGYNPPQDVIKTASIPTNVSEPLTFTWM-SESSDDETYA 279

Query:   276 ALYFQENRAPSPESWRVFNVSVNG--------NTFFKDLNVTTNGVAVYGNEWPLSGQTN 327
              LYF E +       R F + VNG          F  +  +T   +   G       +  
Sbjct:   280 YLYFAEIQQLKANETRQFKILVNGVYYIDYIPRKFEAETLITPAALKCGGGVC----RVQ 335

Query:   328 ITMTPRNDMPVGPIISAGEIFQLLPLAGT-TFPRDVVAMEELAKHFKNPPIDWNGDPCLP 386
             ++ TP++ +P  P ++A EIF ++    + T   +V+A++ +   +K   I W GDPC+P
Sbjct:   336 LSKTPKSTLP--PQMNAIEIFSVIQFPQSDTNTDEVIAIKNIQSTYKVSRISWQGDPCVP 393

Query:   387 WENSWTGVTCNK---SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP 443
              + SW GV+CN    S   R++S+DL    ++G +  SI NLT L+ L L  N L G IP
Sbjct:   394 IQFSWMGVSCNVIDISTPPRIISLDLSSSGLTGVITPSIQNLTMLRELDLSNNNLTGVIP 453

Query:   444 -EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
               ++ LT L  L L NN   G +P+ L+ +  L  I L+ NNL G +P  L
Sbjct:   454 PSLQNLTMLRELDLSNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSVPQAL 504

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2055165 AT2G14510 [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.5e-41, P = 1.5e-41
 Identities = 135/466 (28%), Positives = 212/466 (45%)

Query:    27 QDFL-LSCG----DTVGLTTGRLKFLPDKDFQFLGNTTTLKQPG----LLPILSTLRFFT 77
             Q F+ L CG    ++    +  L F+ D +F   G T  ++       +      LR+F 
Sbjct:    27 QGFISLDCGLPSKESYIEPSSNLTFISDVNFIRGGKTGNIQNNSRTNFIFKPFKVLRYFP 86

Query:    78 ELQARKYCYVFNVTQGDKYLVRXXXXXXXXXXXXQPPVFDQIIGGTKWSIVDTA-EDFAN 136
             +    + CY  +V QG KYL+R              P FD  +G   W+ VD    D  +
Sbjct:    87 D--GIRNCYSLSVKQGTKYLIRTLFYYGNYDGLNTSPRFDLFLGPNIWTSVDVLIADVGD 144

Query:   137 GLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIA 196
             G+    E+V     N L +CL +    TS P ISAIEL  L    Y+T      +L S+A
Sbjct:   145 GVVE--EIVHVTRSNILDICLVKTG--TSTPMISAIELRPLR---YDTYTARTGSLKSMA 197

Query:   197 RSSF-GDDARISFPDDLFNRKWNSFK--DLNPVEENKNKVNPEDFWNKPPAKAFLSSITT 253
                F   D  I +P+D+++R W  +   +   +   +N     D +N P      +SI T
Sbjct:   198 HFYFTNSDEAIRYPEDVYDRVWMPYSQPEWTQINTTRNVSGFSDGYNPPQGVIQTASIPT 257

Query:   254 TKGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGV 313
                +PL   W      +   Y  L+F E +       R F +  NG  +  D        
Sbjct:   258 NGSEPLTFTWNLES-SDDETYAYLFFAEIQQLKVNETREFKILANGVDYI-DYTPWKFEA 315

Query:   314 AVYGNEWPLS--G---QTNITMTPRNDMPVGPIISAGEIFQLLPLAGT-TFPRDVVAMEE 367
                 N  PL   G   +  ++ TP++ +P  P+++A EIF ++    + T   +V+A+++
Sbjct:   316 RTLSNPAPLKCEGGVCRVQLSKTPKSTLP--PLMNAIEIFSVIQFPQSDTNTDEVIAIKK 373

Query:   368 LAKHFKNPPIDWNGDPCLPWENSWTGVTCNK---SKHTRVVSIDLKGFEISGTLPESIGN 424
             +   ++   I W GDPC+P + SW GV+CN    S   R++S+DL    ++G +  SI N
Sbjct:   374 IQSTYQLSRISWQGDPCVPKQFSWMGVSCNVIDISTPPRIISLDLSLSGLTGVISPSIQN 433

Query:   425 LTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTL 469
             LT L+ L L  N L G++PE + T+  L  +HL  N   G +PQ L
Sbjct:   434 LTMLRELDLSNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSVPQAL 479

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2059804 AT2G04300 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.7e-38, P = 4.7e-38
 Identities = 130/464 (28%), Positives = 212/464 (45%)

Query:    44 LKFLPDKDFQFLGNTTT----LKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVR 99
             L +  D DF   G T T    L+     PIL  LR+F E    + CY  NVT G  YL+R
Sbjct:    53 LTYTTDNDFVQSGKTGTIDKELESTYNKPILQ-LRYFPE--GVRNCYTLNVTLGTNYLIR 109

Query:   100 XXXXXXXXXXXXQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLAR 159
                         +   FD  +G   W+ V+TA    NG+++  E++ +     L VCL +
Sbjct:   110 ASFVYGNYDGLNKELEFDLYLGPNLWANVNTAVYLMNGVTTE-EIIHSTKSKVLQVCLIK 168

Query:   160 NNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDARI-SFPDDLFNRKWN 218
               +  S P I+++EL  L +  YNT      +L  + R+ F    RI  +P+D+ +R W 
Sbjct:   169 TGE--SIPIINSLELRPLINDTYNT---QSGSLKYLFRNYFSTSRRIIRYPNDVNDRHWY 223

Query:   219 SFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSITT--TKGKPLQIQWPPGPLPNSRYYIA 276
              F D +   E    +N        P K  ++S +T  +K  P    W   P   +++Y  
Sbjct:   224 PFFDEDAWTELTTNLNVNSSNGYDPPKFVMASASTPISKNAPFNFTWSLIP-STAKFYSY 282

Query:   277 LYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVA-VYGNEWPL--SGQTNITMTPR 333
             ++F + +       R F++ +NGN   +     T     +Y  +  +   GQ  I +   
Sbjct:   283 MHFADIQTLQANETREFDMMLNGNLALERYRPKTFATGTIYFIKPQICEGGQCIIELLKT 342

Query:   334 NDMPVGPIISAGEIFQLLPLAGT-TFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWT 392
             +   + P+ SA E+F ++      T   DV+A++ +   +      W GDPC+P    W 
Sbjct:   343 SKSTLPPLCSALEVFTVIDFPELETNQDDVIAIKNIQNTYGVSKTSWQGDPCVPKRFMWD 402

Query:   393 GVTCNKSKHTR---VVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTL 448
             G+ CN S  +    +  ++L    ++G +  +I NLT L++L L  N L G +PE +  L
Sbjct:   403 GLNCNNSYISTPPTITFLNLSSSHLTGIIASAIQNLTHLQNLDLSNNNLTGGVPEFLAGL 462

Query:   449 TALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
              +L  ++L  N   G +PQTL Q   L+ + L+ N +    PDG
Sbjct:   463 KSLLVINLSGNNLSGSVPQTLLQKKGLK-LNLEGN-IYLNCPDG 504

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2078196 AT3G46350 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
 Identities = 85/271 (31%), Positives = 125/271 (46%)

Query:    36 TVGLTTGRLKFLPDKDF-QF--LGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQ 92
             T  +TT  L++  D +F Q   LG   T  Q   L   +TLR+F +    + CY   V Q
Sbjct:    46 TEPVTT--LQYSSDSNFIQSGKLGRIDTSLQTFFLKQQTTLRYFPD--GIRNCYNLTVKQ 101

Query:    93 GDKYLVRXXXXXXXXXXXXQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNS 152
             G  YL+R              P FD  +G   W  +D  +   N +S+  E+    + NS
Sbjct:   102 GTNYLIRARFTYGNYDGRNMSPTFDLYLGPNLWKRIDMTK-LQNKVSTLEEITYIPLSNS 160

Query:   153 LSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDAR-ISFPDD 211
             L VCL + N T   PFISA+EL  L  + Y TT     +L +  R  F +    I FP D
Sbjct:   161 LDVCLVKTNTTI--PFISALELRPLPSNSYITT---AGSLRTFVRFCFSNSVEDIRFPMD 215

Query:   212 LFNRKWNSFKDLNPVEENKN-KVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPN 270
             + +R W S+ D +  + + +  VN  D +  P A A +++ T  K  P  I         
Sbjct:   216 VHDRMWESYFDDDWTQISTSLTVNTSDSFRLPQA-ALITAATPAKDGPSYIGITFSTSSE 274

Query:   271 SRYYIALYFQENRAPSPESWRVFNVSVNGNT 301
              R++I L+F E +A      R FN+S+NG +
Sbjct:   275 ERFFIYLHFSEVQALRANETREFNISINGES 305

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2148151 AT5G16900 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.2e-37, P = 5.2e-37
 Identities = 131/437 (29%), Positives = 207/437 (47%)

Query:    73 LRFFTELQARKYCYVFNVTQGDKYLVRXXXXXXXXXXXXQPPVFDQIIGGTKWSIVDTAE 132
             LR+F +    + CY  +V Q  +Y+++              P FD  +G  KW  VD  E
Sbjct:    77 LRYFPD--GLRNCYTLDVLQNRRYMIKAVFVYGNYDGYNDYPSFDLYLGPNKWVRVDL-E 133

Query:   133 DFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLN-KFA 191
                NG  S  E++     NSL +CL +  +  S PFISA+EL  L +  Y   D++ K  
Sbjct:   134 GKVNG--SVEEIIHIPSSNSLQICLVKTGN--SLPFISALELRLLRNDTYVVQDVSLKHL 189

Query:   192 LSSIARSSFGDDARISFPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSI 251
                  R S   D  I +PDD+++R W+ F  L    +    ++  +  N  P KA L+S 
Sbjct:   190 FRRYYRQS---DRLIRYPDDVYDRVWSPFF-LPEWTQITTSLDVNNSNNYEPPKAALTSA 245

Query:   252 TTT--KGKPLQIQWPPGPLPNSRYYIALYFQENRAPSPESW---------RVFNVSVNGN 300
              T    G  L I W     P+ + ++ ++F E   P  E+          R F   VNG 
Sbjct:   246 ATPGDNGTRLTIIWTLDN-PDEQIHLYVHFAELE-PVGENTDEALRTLFTRTFYFVVNGK 303

Query:   301 TFFKDLNVTTNGVAVYGNEWPLS----GQTNITMTPRNDMPVG---PIISAGEIFQLLPL 353
               + D ++T   +AV   E  ++    G  ++ +  R++   G   P+++A E F  +  
Sbjct:   304 ISY-DESITPLDLAVSTVETVVNKCDGGNCSLQLV-RSEASPGVRVPLVNAMEAFTAIKF 361

Query:   354 AGT-TFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTC---NKSKHTRVVSIDL 409
               + T P DV++++ +   ++   +DW GDPCLP +  WTG+ C   N S   R++S+DL
Sbjct:   362 PHSETNPDDVISIKVIQATYELSRVDWQGDPCLPQQFLWTGLNCSYMNMSTSPRIISLDL 421

Query:   410 KGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQT 468
                +++G +   I NLT L+ L L  NKL G +PE +  + +L  ++L NN   G IPQ 
Sbjct:   422 SSHKLTGKIVPDIQNLTQLQKLDLSNNKLTGGVPEFLANMKSLLFINLSNNNLVGSIPQA 481

Query:   469 LSQLPILREIFLQNNNL 485
             L     L+  F  N  L
Sbjct:   482 LLDRKNLKLEFEGNPKL 498

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2066158 AT2G28990 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-36, P = 1.1e-36
 Identities = 123/446 (27%), Positives = 200/446 (44%)

Query:    35 DTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGD 94
             D+  + TG++  + DKD     N    KQ        TLR+F E   ++ CY  +V +G 
Sbjct:    51 DSTFIQTGKIDSV-DKDL----NINLSKQ------YLTLRYFPE--GKRNCYSLDVKRGT 97

Query:    95 KYLVRXXXXXXXXXXXXQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLS 154
              YL+             + P FD  +G  KW  +D   +   G     E++  A  NSL 
Sbjct:    98 TYLIVVSFVYGNYDGLNRDPNFDIHLGPNKWKRIDLDGE-KEGTRE--EIIHKARSNSLD 154

Query:   155 VCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDARISFPDDLFN 214
             +CL +  +T   P ISAIE+  L ++ Y  T      +S     S   DA I + DD+ +
Sbjct:   155 ICLVKTGETL--PIISAIEIRPLRNNTY-VTQSGSLMMSFRVYLS-NSDASIRYADDVHD 210

Query:   215 RKWNSFKDLNPVEENKN-KVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRY 273
             R W+ F   +      +  +N  + +  P      ++I      PL I W P P+ N+  
Sbjct:   211 RIWSPFNGSSHTHITTDLNINNSNAYEIPKNILQTAAIPRNASAPLIITWDPLPI-NAEV 269

Query:   274 YIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLS-GQTN----I 328
             Y+ ++F E +       R F+V + GN      + T   V     E P+  G       +
Sbjct:   270 YLYMHFAEIQTLEANETRQFDVILRGNFNHSGFSPTKLKVFTLYTEEPMKCGSEGCYLQL 329

Query:   329 TMTPRNDMPVGPIISAGEIFQLLPLAGT-TFPRDVVAMEELAKHFKNPPIDWNGDPCLPW 387
               TP + +P  P+I+A E + ++  +   T   DV A++ +   +K   I W GDPCLP 
Sbjct:   330 VKTPNSTLP--PLINAIEAYSVIEFSQLETSLSDVDAIKNIKNTYKLNKITWQGDPCLPQ 387

Query:   388 ENSWTGVTC---NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE 444
             + SW  + C   + S    ++S+DL    ++G++P+ + N T L+ L L  N L G +P 
Sbjct:   388 DLSWESIRCTYVDGSTSPTIISLDLSKSGLNGSIPQILQNFTQLQELDLSNNSLTGPVPI 447

Query:   445 -MKTLTALETLHLENNQFEGWIPQTL 469
              +  +  L  ++L  N   G +PQ L
Sbjct:   448 FLANMKTLSLINLSGNNLSGSVPQAL 473

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2024987 AT1G07550 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 2.9e-36, P = 2.9e-36
 Identities = 124/443 (27%), Positives = 199/443 (44%)

Query:    44 LKFLPDKDFQFLGNTTTLKQPGLLPI---LSTLRFFTELQARKYCYVFNVTQGDKYLVRX 100
             L ++ D DF   G T  +++  L+ +    + LR+F +    + CY  NV Q   YL+R 
Sbjct:    50 LTYISDADFIQGGKTGNVQKDLLMKLRKPYTVLRYFPD--GIRNCYSLNVKQDTNYLIRV 107

Query:   101 XXXXXXXXXXXQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARN 160
                          P FD  +G   W+ +D  +   +G+    E++     N L +CL + 
Sbjct:   108 MFRYGNYDGLNNSPRFDLYLGPNIWTTIDMGKS-GDGVLE--EIIHITRSNILDICLVKT 164

Query:   161 NDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIARSSFGDDAR-ISFPDDLFNRKWNS 219
                TS P IS+IEL  L   LY+T      +L +  R  F D    I +P D+ +R W  
Sbjct:   165 G--TSTPMISSIELRPL---LYDTYIAQTGSLRNYNRFYFTDSNNYIRYPQDVHDRIWVP 219

Query:   220 F--KDLNPVEENKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRY-YIA 276
                 +   +  + + ++  D ++ P       ++      P+ I W      +  Y YI 
Sbjct:   220 LILPEWTHINTSHHVIDSIDGYDPPQDVLRTGAMPANASDPMTITWNLKTATDQVYGYI- 278

Query:   277 LYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEWPLS--G---QTNITMT 331
              Y  E         R F V VN    F     T     V  N  PL+  G   +  +  T
Sbjct:   279 -YIAEIMEVQANETREFEVVVNNKVHFDPFRPTRFEAQVMFNNVPLTCEGGFCRLQLIKT 337

Query:   332 PRNDMPVGPIISAGEIFQLLPLAGT-TFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENS 390
             P++ +P  P+++A EIF  +    + T   DV+A++ +   +    I W GDPC+P +  
Sbjct:   338 PKSTLP--PLMNAFEIFTGIEFPQSETNQNDVIAVKNIQASYGLNRISWQGDPCVPKQFL 395

Query:   391 WTGVTCNK---SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MK 446
             WTG++CN    S   R+V +DL    ++G +P SI NLT L+ L L  N L G++PE + 
Sbjct:   396 WTGLSCNVIDVSTPPRIVKLDLSSSGLNGVIPPSIQNLTQLQELDLSQNNLTGKVPEFLA 455

Query:   447 TLTALETLHLENNQFEGWIPQTL 469
              +  L  ++L  N+  G +PQ L
Sbjct:   456 KMKYLLVINLSGNKLSGLVPQAL 478

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	501
pfam12819	335	pfam12819, Malectin_like, Carbohydrate-binding pro	1e-72
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-45
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	9e-04
pfam11721	164	pfam11721, Malectin, Di-glucose binding within end	0.004

>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER

 Score =  233 bits (596), Expect = 1e-72
 Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 37/346 (10%)

Query: 31  LSCG----DTVGLTTGRLKFLPDKDFQFLGNTTT----LKQPGLLPILSTLRFFTELQAR 82
           + CG    ++    +  + ++ D  F   G +           L     TLR F +   +
Sbjct: 1   IDCGLPSNESYTDPSTGITWVSDAGFIDTGKSGNISKENSSSFLSKPYKTLRSFPDG--K 58

Query: 83  KYCYVFNVT--QGDKYLVRTTYYYGGFDGGTQ---PPVFDQIIGGTKWSIVDTAEDFANG 137
           + CY   VT  +G KYL+R T+ YG +DG      PP FD  +G   W+ V+      +G
Sbjct: 59  RNCYTLPVTPGKGTKYLIRATFLYGNYDGLNSVSSPPSFDLYLGVNLWTTVNL--SNDSG 116

Query: 138 LSSYYE-VVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLYNTTDLNKFALSSIA 196
            S   E ++     ++LSVCL      T  PFISA+EL  L DSLY ++  +  AL  +A
Sbjct: 117 DSVVKEYIIHVTKSDTLSVCLVNTGTGT--PFISALELRPLPDSLYPSSGGS-QALKLVA 173

Query: 197 RSSFG-DDARISFPDDLFNRKWNSFKDLNPVEEN----KNKVNPEDFWNKPPAKAFLSSI 251
           R +FG  +  I +PDD+++R W  F       +        ++  +    PP+    +++
Sbjct: 174 RLNFGGSEGTIRYPDDVYDRIWEPFFSSPGWSQISTSLSVDISSNNAPYIPPSAVLQTAV 233

Query: 252 TTTKG-KPLQIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVT- 309
           T T    PL   W     PN  YY+ L+F E ++      R F++ +NG T + D++   
Sbjct: 234 TPTNASAPLNFTWDL-VDPNFEYYVYLHFAEIQSLET---REFDIYINGKTVYGDVSPKY 289

Query: 310 --TNGVAVYGN---EWPLSGQTNITMTPRNDMPVGPIISAGEIFQL 350
             T+  A+Y +        G  NI++ P +   + P+++A EIF++
Sbjct: 290 LGTDTGALYLDFPVNVSGGGLLNISLVPTSGSTLPPLLNALEIFKV 335

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. Length = 335

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score =  166 bits (423), Expect = 5e-45
 Identities = 146/529 (27%), Positives = 230/529 (43%), Gaps = 65/529 (12%)

Query: 9   LWFF-SSPFFALSQPTTSPQDFLL--SCGDTVGLTTGRLKFLPDKDFQFLGNT-TTLKQP 64
           LW   +S   A+     SP+ F +  SCG  V + T     L  KDF + G       +P
Sbjct: 3   LWLLAASALLAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRP 62

Query: 65  G-LLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGT 123
             + P L TLR+F      + CY  N      Y VR  +           P+FD  + GT
Sbjct: 63  SFIAPPLKTLRYFPLSDGPENCYNINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVEGT 122

Query: 124 KWSIVDTAEDFANGLSS-----YYEVVVAAVGNSLSVCLARNNDTTSH--PFISAIELSK 176
           + S         +G SS     + E +V     S S+C      +T H  P I +IE+ +
Sbjct: 123 QIS------SLKSGWSSHDEQVFAEALVFLTDGSASICF----HSTGHGDPAILSIEILQ 172

Query: 177 LDDSLYN-TTDLNKFALSSIAR--------SSFGDDAR-ISFPDDLFNRKWNSFKDLNP- 225
           +DD  YN      +  +   A+        S F +D     +  D F   WN  +     
Sbjct: 173 VDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRF---WNRMQTFGSG 229

Query: 226 ------VEEN-KNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLPNSRYYIALY 278
                  E   K   N  +F+   P   + S++ +T  +P  + +     PN  Y + L+
Sbjct: 230 SDQAISTENVIKKASNAPNFY---PESLYQSALVSTDTQP-DLSYTMDVDPNRNYSVWLH 285

Query: 279 FQE-NRAPSPESWRVFNVSVNGNTFFKDLNVTTNGVAVYGNEW-PLSGQTNITMTPRN-- 334
           F E + + + E  RVF+V +NG+T FKD+++    V + G  +  L     + ++ R   
Sbjct: 286 FAEIDNSITAEGKRVFDVLINGDTAFKDVDI----VKMSGERYTALVLNKTVAVSGRTLT 341

Query: 335 --DMPV-GP--IISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPP-IDWNGDPCLPWE 388
               P  G   II+A E+F+++     T   +V A++ L      P    WNGDPC+P +
Sbjct: 342 IVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ 401

Query: 389 NSWTGVTC---NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-E 444
           + W+G  C   +      +  + L    + G +P  I  L  L+ + L GN + G IP  
Sbjct: 402 HPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS 461

Query: 445 MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           + ++T+LE L L  N F G IP++L QL  LR + L  N+L G++P  L
Sbjct: 462 LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.8 bits (176), Expect = 4e-13
 Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGW 464
           ++DL    +SG +P  IG+ ++LK L LGGN L G+IP  +  LT+LE L L +NQ  G 
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203

Query: 465 IPQTLSQLPILREIFLQNNNLDGQIP 490
           IP+ L Q+  L+ I+L  NNL G+IP
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.0 bits (174), Expect = 6e-13
 Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 13/117 (11%)

Query: 378 DWN--GDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGG 435
           +WN   D CL     W G+TCN S  +RVVSIDL G  ISG +  +I  L  ++ + L  
Sbjct: 50  NWNSSADVCL-----WQGITCNNS--SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102

Query: 436 NKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIP 490
           N+L G IP+    T ++L  L+L NN F G IP+    +P L  + L NN L G+IP
Sbjct: 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.0 bits (174), Expect = 7e-13
 Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 1/106 (0%)

Query: 389 NSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKT 447
           N + G   +     R+ ++DL   + SG +P  +G+L+ L  L+L  NKL G+IP E+ +
Sbjct: 462 NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521

Query: 448 LTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
              L +L L +NQ  G IP + S++P+L ++ L  N L G+IP  L
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQL 472
           +SG +P SI +L  L  L L  N L G+IPE+   L  LE LHL +N F G IP  L+ L
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 473 PILREIFLQNNNLDGQIPDGLWK 495
           P L+ + L +N   G+IP  L K
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGK 354

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 407 IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWI 465
           +DL G  + G +P S+ NLT+L+ L L  N+L GQIP E+  + +L+ ++L  N   G I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 466 PQTLSQLPILREIFLQNNNLDGQIPDGL 493
           P  +  L  L  + L  NNL G IP  L
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 1/97 (1%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQ 460
            +++S+DL    +SG +PE +  L  L+ L L  N   G+IP  + +L  L+ L L +N+
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPG 497
           F G IP+ L +   L  + L  NNL G+IP+GL   G
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 7e-10
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 387 WENSWTG-VTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE- 444
           W N ++G +  N  KH  +  +DL    ++G +PE + +   L  L L  N L G+IP+ 
Sbjct: 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399

Query: 445 MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494
           +    +L  + L++N F G +P   ++LP++  + + NNNL G+I    W
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 9e-10
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 407 IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWI 465
           +DL    ++G +P S+GNL  L++L L  NKL G IP  + +L  L +L L +N   G I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 466 PQTLSQLPILREIFLQNNNLDGQIPDGL 493
           P+ + QL  L  + L +NN  G+IP  L
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVAL 328

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 6e-08
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQ 460
           T +  + L   ++ G +P  +G + +LK + LG N L G+IP E+  LT+L  L L  N 
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247

Query: 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIP 490
             G IP +L  L  L+ +FL  N L G IP
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 29/87 (33%), Positives = 45/87 (51%)

Query: 407 IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIP 466
           +D+    + G +     ++ +L+ L L  NK +G +P+      LE L L  NQF G +P
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492

Query: 467 QTLSQLPILREIFLQNNNLDGQIPDGL 493
           + L  L  L ++ L  N L G+IPD L
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDEL 519

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 8/108 (7%)

Query: 388 ENSWTGVTCNK-SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--- 443
            N ++G    K    + ++ + L   ++SG +P+ + +   L  L L  N+L GQIP   
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 444 -EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIP 490
            EM  L+ L+   L  NQ  G IP+ L  +  L ++ + +N+L G +P
Sbjct: 544 SEMPVLSQLD---LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTA---LETLHLENNQFEGWIPQTLS 470
            SG +P+++G    L  L L  N L G+IPE   L +   L  L L +N  EG IP++L 
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE--GLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 471 QLPILREIFLQNNNLDGQIPDGLWK 495
               LR + LQ+N+  G++P    K
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTK 426

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 428 LKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
           LK L L  N+L        K L  L+ L L  N      P+  S LP LR + L  NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.7 bits (86), Expect = 9e-04
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 426 TALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFE 462
           T L+ L L  N++   +P +  L  LETL L  N+  
Sbjct: 1   TNLETLDLSNNQI-TDLPPLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 268 LPNSRYYIALYFQE-NRAPSPESWRVFNVSVNGNTFFKDLNV 308
           L N  Y + L+F E          RVF+V V G    KD ++
Sbjct: 70  LENGNYTVILHFAEIYFGEDGLGRRVFDVYVQGKLVLKDFDI 111

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	501
PLN03150	623	hypothetical protein; Provisional	100.0
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	100.0
PLN03150	623	hypothetical protein; Provisional	99.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.32
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.07
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.99
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.54
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.38
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.33
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.28
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.23
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.16
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.06
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	98.04
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.97
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.77
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.66
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.61
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.3
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.99
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.47
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.96
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	95.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.17
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.47
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.09
PRK15386	426	type III secretion protein GogB; Provisional	94.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.74
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	91.94
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.82
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.76
smart00370	26	LRR Leucine-rich repeats, outliers.	91.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	90.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.19
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	88.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	87.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.39
PRK15386	426	type III secretion protein GogB; Provisional	87.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	86.94
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.41
smart00370	26	LRR Leucine-rich repeats, outliers.	83.23
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.23

>PLN03150 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-87  Score=734.67  Aligned_cols=464  Identities=27%  Similarity=0.439  Sum_probs=385.0

Q ss_pred             CCCceEEccCCCCCCc--ccceEEecCccccccCCcccccCCCCCCCcceEEeecCCCCCceeEEeeccCCCeEEEEEEe
Q 042915           25 SPQDFLLSCGDTVGLT--TGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTY  102 (501)
Q Consensus        25 ~~~~f~idCG~~~~~~--~~~~~~~~D~~~~~~g~~~~~~~~~~~~~y~t~R~F~~~~~~~~cY~~~~~~~~~ylvR~~F  102 (501)
                      .++.|+||||++++.+  .+||+|++|..|..+.......++...++|+|||+||..+|+++||+||++++|+||||+||
T Consensus        22 ~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g~ylVRl~F  101 (623)
T PLN03150         22 EPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRPSFIAPPLKTLRYFPLSDGPENCYNINRVPKGHYSVRVFF  101 (623)
T ss_pred             CCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCcccccchhhccccCCcccccccceEeeecCCCcEEEEEEe
Confidence            3456799999988764  68999999977743222222223344578999999997558899999999999999999999


Q ss_pred             eccCCCCCCCCCceEEEEcCeEEEEEEccccccCCcceEEEEEEEecCCceEEEEeecCCCCCCceeeeEEeeecCCCCc
Q 042915          103 YYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLY  182 (501)
Q Consensus       103 ~~~~yd~~~~~~~F~v~~~~~~~~~v~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~~~~~~~~pFIn~iEl~~l~~~~y  182 (501)
                      +||+||+.+.+|.|||++|++.|.++...-.. .+..++||++++++++.++|||+|++.+  +||||+|||||||+.+|
T Consensus       102 ~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~-~~~~v~~E~i~~~~~~~l~vcf~~~~~~--~pFIs~iEv~~l~~~~y  178 (623)
T PLN03150        102 GLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS-HDEQVFAEALVFLTDGSASICFHSTGHG--DPAILSIEILQVDDKAY  178 (623)
T ss_pred             ecCCcCCCCCCCceEEEECcEEEEEEecCccc-CCCcEEEEEEEEecCCcEEEEEecCCCC--CCceeEEEEEEcCcccc
Confidence            99999999988899999999999999753211 2346899999999999999999999876  99999999999999999


Q ss_pred             ccc--ccccceeEEEeeeecCCC---CCCCCCCCCC--CccccCCCCC---C-CceecccccCC-CCCCCCCcHHHHhhc
Q 042915          183 NTT--DLNKFALSSIARSSFGDD---ARISFPDDLF--NRKWNSFKDL---N-PVEENKNKVNP-EDFWNKPPAKAFLSS  250 (501)
Q Consensus       183 ~~~--~~~~~~l~~~~R~n~G~~---~~ir~~dD~~--dR~W~~~~~~---~-~~~~~~~~i~~-~~~~~~~P~~V~~TA  250 (501)
                      ...  ...+.+|+++||+||||+   ..+|||||+|  ||+|.+|...   . ..+++...|+. .+.++.||+.|||||
T Consensus       179 ~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA  258 (623)
T PLN03150        179 NFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSA  258 (623)
T ss_pred             cccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhh
Confidence            633  123568999999999995   2489999998  9999988552   1 12333444542 345788999999999


Q ss_pred             ccCCCCcceEEecCCCCCCCccEEEEEEeeecCC-CCCCCceEEEEEECCcccccccccccc----cceeeecccc--cC
Q 042915          251 ITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRA-PSPESWRVFNVSVNGNTFFKDLNVTTN----GVAVYGNEWP--LS  323 (501)
Q Consensus       251 ~~~~~~~~~~ltw~~~~~~~~~y~v~lhF~e~~~-~~~~~~R~F~I~in~~~~~~~~~~~~~----~~~~~~~~~~--~~  323 (501)
                      +++.++. .+++|.++++++..|+|||||||++. ....++|+|||||||+.+.+++|+...    ..+++.++..  ..
T Consensus       259 ~~~~~~~-~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~  337 (623)
T PLN03150        259 LVSTDTQ-PDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSG  337 (623)
T ss_pred             ccccCCC-CceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecC
Confidence            9887633 67899999999999999999999974 446678999999999998888886442    2344443321  23


Q ss_pred             cceEEEEccCCCCCCCcccccccceecccccCcCcchhHHHHHHHHHhcCCCCC-CCCCCCCCCCCCCcceeeecCCC--
Q 042915          324 GQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPI-DWNGDPCLPWENSWTGVTCNKSK--  400 (501)
Q Consensus       324 g~~~l~l~~~~~s~lpp~ln~lei~~~l~~~~~t~~~d~~al~~~~~~~~~~~~-~W~~d~C~~~~~~w~gv~c~~~~--  400 (501)
                      +.++|++++...+  +|+|||+|||++.+.+..+.+.|+.||+.+|..+..... +|+++||.|..+.|.|+.|....  
T Consensus       338 g~l~isl~p~~~s--~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~~~~~  415 (623)
T PLN03150        338 RTLTIVLQPKKGT--HAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTK  415 (623)
T ss_pred             CeEEEEEeeCCCC--cceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeeccCCC
Confidence            6688999986544  699999999999998788899999999999998875433 89999999888899999996422  


Q ss_pred             -CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          401 -HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       401 -l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                       ...++.|+|++|++.|.+|..++.|++|+.|+|++|++.|.+| .++.+++|+.|+|++|+++|.+|+.++.+++|+.|
T Consensus       416 ~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        416 GKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             CceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence             2469999999999999999999999999999999999999988 58999999999999999999999999999999999


Q ss_pred             EccCCcCcccCCccCC
Q 042915          479 FLQNNNLDGQIPDGLW  494 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~~~  494 (501)
                      +|++|+|+|.+|..+.
T Consensus       496 ~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        496 NLNGNSLSGRVPAALG  511 (623)
T ss_pred             ECcCCcccccCChHHh
Confidence            9999999999998875

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=100.00  E-value=1.3e-71  Score=568.42  Aligned_cols=314  Identities=30%  Similarity=0.552  Sum_probs=255.1

Q ss_pred             EccCCCCCCc-----ccceEEecCccccccCCcccccC------CCCCCCcceEEeecCCCCCceeEEeecc--CCCeEE
Q 042915           31 LSCGDTVGLT-----TGRLKFLPDKDFQFLGNTTTLKQ------PGLLPILSTLRFFTELQARKYCYVFNVT--QGDKYL   97 (501)
Q Consensus        31 idCG~~~~~~-----~~~~~~~~D~~~~~~g~~~~~~~------~~~~~~y~t~R~F~~~~~~~~cY~~~~~--~~~~yl   97 (501)
                      ||||++.+.+     .+||+|++|.+|+++|++..++.      +...++|+|||+||+  |+|+||+|++.  +|+|||
T Consensus         1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~--g~r~cY~l~~~~~~~~~yl   78 (347)
T PF12819_consen    1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFPE--GSRNCYTLPVTPPGGGKYL   78 (347)
T ss_pred             CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcCC--CCccEEEeeccCCCCceEE
Confidence            7999986644     46999999999999999887732      233569999999997  57899999998  466999


Q ss_pred             EEEEeeccCCCCCC-----CCCceEEEEcCeEEEEEEccccccCCcceEEEEEEEec-CCceEEEEeecCCCCCCceeee
Q 042915           98 VRTTYYYGGFDGGT-----QPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAV-GNSLSVCLARNNDTTSHPFISA  171 (501)
Q Consensus        98 vR~~F~~~~yd~~~-----~~~~F~v~~~~~~~~~v~~~~~~~~~~~~~~E~i~~~~-~~~l~vcf~~~~~~~~~pFIn~  171 (501)
                      |||||+|||||+++     .++.|||++|++.|.+|++.. . ...+++||+++.+. ++.+.|||+|++.| .+||||+
T Consensus        79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~-~~~~~~~E~ii~v~~~~~l~vclv~~~~g-~~pFIsa  155 (347)
T PF12819_consen   79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-S-PSSPVVKEFIINVTWSDTLSVCLVPTGSG-TFPFISA  155 (347)
T ss_pred             EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-C-CcceEEEEEEEEEcCCCcEEEEEEeCCCC-CCCceeE
Confidence            99999999999874     256799999999999999865 1 22468999888887 79999999999966 2599999


Q ss_pred             EEeeecCCCCccc-cccccceeEEEeeeecCCC-CCCCCCCCCCCccccCCCC-CCCc-eecccccC--CCCCCCCCcHH
Q 042915          172 IELSKLDDSLYNT-TDLNKFALSSIARSSFGDD-ARISFPDDLFNRKWNSFKD-LNPV-EENKNKVN--PEDFWNKPPAK  245 (501)
Q Consensus       172 iEl~~l~~~~y~~-~~~~~~~l~~~~R~n~G~~-~~ir~~dD~~dR~W~~~~~-~~~~-~~~~~~i~--~~~~~~~~P~~  245 (501)
                      |||||||+++|+. ....+.+|++++|+|||+. ..||||||+|||+|.++.. ..+. +.++.+|+  ..+..+.||.+
T Consensus       156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~  235 (347)
T PF12819_consen  156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSA  235 (347)
T ss_pred             EEEEECCccceeccccCCCceeEEEEeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHH
Confidence            9999999999952 3356789999999999995 2499999999999997632 2222 33334454  34668999999


Q ss_pred             HHhhcccCCCCc-ceEEecCCCCCCCccEEEEEEeeecCCCC-CCCceEEEEEECCcccccccccccc---cceeeeccc
Q 042915          246 AFLSSITTTKGK-PLQIQWPPGPLPNSRYYIALYFQENRAPS-PESWRVFNVSVNGNTFFKDLNVTTN---GVAVYGNEW  320 (501)
Q Consensus       246 V~~TA~~~~~~~-~~~ltw~~~~~~~~~y~v~lhF~e~~~~~-~~~~R~F~I~in~~~~~~~~~~~~~---~~~~~~~~~  320 (501)
                      ||+||++|.++. +++++|.+ +++++.||||||||||+... ..++|+|+|||||+.+.+++.+...   +.++|.+++
T Consensus       236 V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~  314 (347)
T PF12819_consen  236 VYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYV  314 (347)
T ss_pred             HHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceE
Confidence            999999998754 79999999 99999999999999999764 3447999999999998875555222   345566654


Q ss_pred             c---cCcceEEEEccCCCCCCCcccccccceec
Q 042915          321 P---LSGQTNITMTPRNDMPVGPIISAGEIFQL  350 (501)
Q Consensus       321 ~---~~g~~~l~l~~~~~s~lpp~ln~lei~~~  350 (501)
                      .   ..+.++|+|+++..+.+||+|||+|||++
T Consensus       315 ~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v  347 (347)
T PF12819_consen  315 VNVPDSGFLNISLGPTPDSTLPPILNALEIYKV  347 (347)
T ss_pred             EEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence            3   33468899999999999999999999974

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PLN03150 hypothetical protein; Provisional

Probab=99.75  E-value=2.6e-17  Score=181.03  Aligned_cols=92  Identities=34%  Similarity=0.491  Sum_probs=82.4

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCC-CCCCE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQL-PILRE  477 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l-~~L~~  477 (501)
                      .+++|+.|+|++|+|.|.+|..++.|++|+.|+|++|+++|.+|+ +++|++|+.|+|++|+++|.+|..++.+ .++..
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~  519 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS  519 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence            456899999999999999999999999999999999999999995 8999999999999999999999998864 46788


Q ss_pred             EEccCCcCcccCCc
Q 042915          478 IFLQNNNLDGQIPD  491 (501)
Q Consensus       478 L~Ls~N~l~g~lP~  491 (501)
                      +++.+|...+..|.
T Consensus       520 l~~~~N~~lc~~p~  533 (623)
T PLN03150        520 FNFTDNAGLCGIPG  533 (623)
T ss_pred             EEecCCccccCCCC
Confidence            99999986545553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.32  E-value=5.8e-12  Score=146.35  Aligned_cols=138  Identities=33%  Similarity=0.569  Sum_probs=95.2

Q ss_pred             CcCcchhHHHHHHHHHhcCCCC---CCCCC-CCCCCCCCCcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCe
Q 042915          355 GTTFPRDVVAMEELAKHFKNPP---IDWNG-DPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKH  430 (501)
Q Consensus       355 ~~t~~~d~~al~~~~~~~~~~~---~~W~~-d~C~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~  430 (501)
                      ....+.|..+|.++|+.+..+.   .+|+. +.|    |.|.|+.|..  ..+++.|+|++|++.|.++..+..+++|+.
T Consensus        24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~----c~w~gv~c~~--~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~   97 (968)
T PLN00113         24 SMLHAEELELLLSFKSSINDPLKYLSNWNSSADV----CLWQGITCNN--SSRVVSIDLSGKNISGKISSAIFRLPYIQT   97 (968)
T ss_pred             cCCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCC----CcCcceecCC--CCcEEEEEecCCCccccCChHHhCCCCCCE
Confidence            3446789999999999885332   36853 344    4899999974  247888888888888777777777888888


Q ss_pred             eecCCCcCCCCCcC--CCCCCCCCEEEccCC----------------------cCCccCccccCCCCCCCEEEccCCcCc
Q 042915          431 LRLGGNKLWGQIPE--MKTLTALETLHLENN----------------------QFEGWIPQTLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       431 L~Ls~N~l~~~~p~--~~~l~~L~~L~Ls~N----------------------~l~g~~P~~~~~l~~L~~L~Ls~N~l~  486 (501)
                      |+|++|++.+.+|.  +..+++|++|+|++|                      .+.+.+|..++.+++|++|+|++|.+.
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            88888877766663  335555555555555                      445556666667777777777777777


Q ss_pred             ccCCccCC-CCCC
Q 042915          487 GQIPDGLW-KPGL  498 (501)
Q Consensus       487 g~lP~~~~-~~~L  498 (501)
                      +.+|..+. +++|
T Consensus       178 ~~~p~~~~~l~~L  190 (968)
T PLN00113        178 GKIPNSLTNLTSL  190 (968)
T ss_pred             ccCChhhhhCcCC
Confidence            67776665 4443

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.07  E-value=4.6e-10  Score=103.88  Aligned_cols=140  Identities=17%  Similarity=0.214  Sum_probs=76.7

Q ss_pred             eEEccCCCCCCcccceEEecCccccccCCcc-----------cccCC----CCCCCcceEEeecCCCCCceeEEeeccCC
Q 042915           29 FLLSCGDTVGLTTGRLKFLPDKDFQFLGNTT-----------TLKQP----GLLPILSTLRFFTELQARKYCYVFNVTQG   93 (501)
Q Consensus        29 f~idCG~~~~~~~~~~~~~~D~~~~~~g~~~-----------~~~~~----~~~~~y~t~R~F~~~~~~~~cY~~~~~~~   93 (501)
                      +.||||++...+..|+.|.+|..|...+...           ....+    ....+|+|.|.=+.    ...|.+|+.+.
T Consensus         3 ~~IN~Gg~~~~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~~~~   78 (174)
T PF11721_consen    3 LRINAGGPAYTDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPVVPN   78 (174)
T ss_dssp             EEEEETSSSEEETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE--S-
T ss_pred             EEEECCCCcccCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEecCCC
Confidence            4799999876567899999998765333300           00010    11248999999654    38999997788


Q ss_pred             CeEEEEEEeeccCCCC---CCCC-C-ceEEEEcCe-EEEEEEccccccCC-cceEEEE-EEEecCCceEEEEeecCCC--
Q 042915           94 DKYLVRTTYYYGGFDG---GTQP-P-VFDQIIGGT-KWSIVDTAEDFANG-LSSYYEV-VVAAVGNSLSVCLARNNDT--  163 (501)
Q Consensus        94 ~~ylvR~~F~~~~yd~---~~~~-~-~F~v~~~~~-~~~~v~~~~~~~~~-~~~~~E~-i~~~~~~~l~vcf~~~~~~--  163 (501)
                      |.|-|||||-=..+..   ...+ . .|||.+++. ....+++....... ...++++ -+.++++.|.|+|...+++  
T Consensus        79 G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~~~~  158 (174)
T PF11721_consen   79 GTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGKGTL  158 (174)
T ss_dssp             EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--SEE
T ss_pred             cEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCCCcE
Confidence            8999999995332222   1111 2 499999984 35555553322111 2467777 4567889999999952221  


Q ss_pred             -------CCCceeeeE
Q 042915          164 -------TSHPFISAI  172 (501)
Q Consensus       164 -------~~~pFIn~i  172 (501)
                             .+-|.||||
T Consensus       159 ~i~~~~~~~~p~IsaI  174 (174)
T PF11721_consen  159 CIPFIGSYGNPLISAI  174 (174)
T ss_dssp             EEEEESSSSSSSEEEE
T ss_pred             EeeccccCCCcEEeeC
Confidence                   124777776

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.00  E-value=1.7e-10  Score=106.87  Aligned_cols=108  Identities=18%  Similarity=0.238  Sum_probs=62.0

Q ss_pred             EeeeecCCCCCCCCCCCCCCccccCCCCCC---C-ceec----ccccC-CCCCCCCCcHHHHhhcccCCCCcceEEecCC
Q 042915          195 IARSSFGDDARISFPDDLFNRKWNSFKDLN---P-VEEN----KNKVN-PEDFWNKPPAKAFLSSITTTKGKPLQIQWPP  265 (501)
Q Consensus       195 ~~R~n~G~~~~ir~~dD~~dR~W~~~~~~~---~-~~~~----~~~i~-~~~~~~~~P~~V~~TA~~~~~~~~~~ltw~~  265 (501)
                      ++|+|+||.   .+ .|...+.|.+|....   + ...+    ..... ........+..+|||+|....    +++|.+
T Consensus         2 ~~~IN~Gg~---~~-~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~i   73 (174)
T PF11721_consen    2 VLRINAGGP---AY-TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDI   73 (174)
T ss_dssp             EEEEEETSS---SE-EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEE
T ss_pred             EEEEECCCC---cc-cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEE
Confidence            689999995   24 778999999985432   2 1101    00011 112234557799999987333    255555


Q ss_pred             CCCCCccEEEEEEeeecCCCC-----CCCceEEEEEECCccccccccccc
Q 042915          266 GPLPNSRYYIALYFQENRAPS-----PESWRVFNVSVNGNTFFKDLNVTT  310 (501)
Q Consensus       266 ~~~~~~~y~v~lhF~e~~~~~-----~~~~R~F~I~in~~~~~~~~~~~~  310 (501)
                      ++.++-.|-|+|||||+....     ..++|+|||+|||+.+.+++|+..
T Consensus        74 p~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~  123 (174)
T PF11721_consen   74 PVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYA  123 (174)
T ss_dssp             E--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHH
T ss_pred             ecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHH
Confidence            656678899999999986443     356899999999999999999765

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.99  E-value=4.5e-10  Score=130.59  Aligned_cols=93  Identities=29%  Similarity=0.547  Sum_probs=64.4

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ++++|+.|+|++|++.+.+|..+.++++|+.|+|++|++++.+|. +..+++|+.|+|++|++.|.+|..+..+++|+.|
T Consensus       497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            345666677777777766777677777777777777777766663 5667777777777777777777777777777777


Q ss_pred             EccCCcCcccCCcc
Q 042915          479 FLQNNNLDGQIPDG  492 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~  492 (501)
                      ++++|+++|.+|..
T Consensus       577 ~ls~N~l~~~~p~~  590 (968)
T PLN00113        577 NISHNHLHGSLPST  590 (968)
T ss_pred             eccCCcceeeCCCc
Confidence            77777777767643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.85  E-value=7.7e-11  Score=105.73  Aligned_cols=153  Identities=24%  Similarity=0.330  Sum_probs=117.3

Q ss_pred             EEEEccCCCCCCCcccccccceecccccC---cCcchhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeecCCCCee
Q 042915          327 NITMTPRNDMPVGPIISAGEIFQLLPLAG---TTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTR  403 (501)
Q Consensus       327 ~l~l~~~~~s~lpp~ln~lei~~~l~~~~---~t~~~d~~al~~~~~~~~~~~~~W~~d~C~~~~~~w~gv~c~~~~l~~  403 (501)
                      .+.+..+....+||-+..+..++.+.+.+   ...+..+..|.+++-.-.+    .         +...-++...+.++.
T Consensus        37 rLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg----m---------nrl~~lprgfgs~p~  103 (264)
T KOG0617|consen   37 RLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG----M---------NRLNILPRGFGSFPA  103 (264)
T ss_pred             hhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc----h---------hhhhcCccccCCCch
Confidence            45566566666777775555566555532   3345556666666532111    1         122333444567889


Q ss_pred             EEEecCCCCccc-ccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915          404 VVSIDLKGFEIS-GTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN  482 (501)
Q Consensus       404 l~~L~Ls~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~  482 (501)
                      |+.|+|.+|++. ..+|..|..|+.|+.|+|+.|.+.-.+|++++|++|+.|.+..|.+. ++|..++.+++|++|++.+
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            999999999997 46899999999999999999999988889999999999999999998 8999999999999999999


Q ss_pred             CcCcccCCccCC
Q 042915          483 NNLDGQIPDGLW  494 (501)
Q Consensus       483 N~l~g~lP~~~~  494 (501)
                      |+++ .+|++++
T Consensus       183 nrl~-vlppel~  193 (264)
T KOG0617|consen  183 NRLT-VLPPELA  193 (264)
T ss_pred             ceee-ecChhhh
Confidence            9999 8999887

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.82  E-value=2e-10  Score=103.11  Aligned_cols=105  Identities=24%  Similarity=0.365  Sum_probs=83.9

Q ss_pred             CcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCC-Cc-CCCCCCCCCEEEccCCcCCccCcc
Q 042915          390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQ-IP-EMKTLTALETLHLENNQFEGWIPQ  467 (501)
Q Consensus       390 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~-~p-~~~~l~~L~~L~Ls~N~l~g~~P~  467 (501)
                      +.+.++.+.+.+++|+.|++.-|++. .+|..|+.++.|+.|||..|++... +| .|-.|+.|+.|.|+.|.++ .+|.
T Consensus        67 qie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~  144 (264)
T KOG0617|consen   67 QIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPP  144 (264)
T ss_pred             hhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCCh
Confidence            55666777777888888888888887 7788888888888888888888643 45 4667778888888888887 7888


Q ss_pred             ccCCCCCCCEEEccCCcCcccCCccCC-CCC
Q 042915          468 TLSQLPILREIFLQNNNLDGQIPDGLW-KPG  497 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~  497 (501)
                      .++.+++|+.|.+..|.+- ++|.+++ ++.
T Consensus       145 dvg~lt~lqil~lrdndll-~lpkeig~lt~  174 (264)
T KOG0617|consen  145 DVGKLTNLQILSLRDNDLL-SLPKEIGDLTR  174 (264)
T ss_pred             hhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence            8999999999999999888 7898887 443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.74  E-value=7.6e-10  Score=116.06  Aligned_cols=150  Identities=22%  Similarity=0.352  Sum_probs=113.5

Q ss_pred             CCCcccccccceecccccCcCcchhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeecCCCCeeEEEecCCCCcccc
Q 042915          337 PVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISG  416 (501)
Q Consensus       337 ~lpp~ln~lei~~~l~~~~~t~~~d~~al~~~~~~~~~~~~~W~~d~C~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g  416 (501)
                      .+|+.+..+..+..+++.-...+.-.+.+-++......   +.++       +..+.+.-..+...+|.+|+||.|+|+ 
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrL---NLS~-------N~iteL~~~~~~W~~lEtLNlSrNQLt-  281 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRL---NLSG-------NKITELNMTEGEWENLETLNLSRNQLT-  281 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhhee---ccCc-------CceeeeeccHHHHhhhhhhccccchhc-
Confidence            46777777777777766544455555555555443221   1111       233444433344568899999999999 


Q ss_pred             cCcccccCCCCCCeeecCCCcCC--CCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC
Q 042915          417 TLPESIGNLTALKHLRLGGNKLW--GQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       417 ~~p~~~~~L~~L~~L~Ls~N~l~--~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      .+|+.+++|+.|+.|.+.+|+++  |++..+++|.+|+.+.+++|.+. .+|+.+++|..|+.|.|++|+|- .+|+++.
T Consensus       282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH  359 (1255)
T KOG0444|consen  282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH  359 (1255)
T ss_pred             cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh
Confidence            89999999999999999999985  44446999999999999999998 99999999999999999999998 8999987


Q ss_pred             -CCCCc
Q 042915          495 -KPGLN  499 (501)
Q Consensus       495 -~~~L~  499 (501)
                       ++.|+
T Consensus       360 lL~~l~  365 (1255)
T KOG0444|consen  360 LLPDLK  365 (1255)
T ss_pred             hcCCcc
Confidence             66554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.66  E-value=1.6e-08  Score=76.67  Aligned_cols=60  Identities=43%  Similarity=0.575  Sum_probs=41.7

Q ss_pred             CCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcC
Q 042915          426 TALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL  485 (501)
Q Consensus       426 ~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l  485 (501)
                      ++|++|++++|+++...++ |.++++|++|+|++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566777777777766553 57777777777777777755566777777777777777764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=3.4e-08  Score=74.80  Aligned_cols=60  Identities=32%  Similarity=0.483  Sum_probs=54.8

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcC
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQF  461 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l  461 (501)
                      ++|+.|++++|+|+...+..|.++++|++|++++|+++...++ |.++++|+.|+|++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3688999999999977778999999999999999999988774 89999999999999985

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.54  E-value=1e-08  Score=107.70  Aligned_cols=151  Identities=19%  Similarity=0.229  Sum_probs=107.3

Q ss_pred             CcceEEEEccCCCCCCCcccccccceecccccC---cCcchhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeecCC
Q 042915          323 SGQTNITMTPRNDMPVGPIISAGEIFQLLPLAG---TTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKS  399 (501)
Q Consensus       323 ~g~~~l~l~~~~~s~lpp~ln~lei~~~l~~~~---~t~~~d~~al~~~~~~~~~~~~~W~~d~C~~~~~~w~gv~c~~~  399 (501)
                      +...++.|..+..-.+|..+..+..++-+.+.-   .+...+...|-.++....-       +    ..-.-.||+-+.-
T Consensus        32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R-------~----N~LKnsGiP~diF  100 (1255)
T KOG0444|consen   32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR-------D----NNLKNSGIPTDIF  100 (1255)
T ss_pred             hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh-------c----cccccCCCCchhc
Confidence            445678888777777887777766665555421   1112222222222221110       0    0113456777777


Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      .+..|+.|+||+|+|. ..|..+..-+++-.|+||+|+|..++.. +-+|+.|..||||+|++. .+|+.+.+|..|+.|
T Consensus       101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL  178 (1255)
T ss_pred             ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence            7888999999999998 7888888889999999999999855544 688999999999999998 788889999999999


Q ss_pred             EccCCcCc
Q 042915          479 FLQNNNLD  486 (501)
Q Consensus       479 ~Ls~N~l~  486 (501)
                      .|++|+|.
T Consensus       179 ~Ls~NPL~  186 (1255)
T KOG0444|consen  179 KLSNNPLN  186 (1255)
T ss_pred             hcCCChhh
Confidence            99999864

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.38  E-value=3.2e-08  Score=99.49  Aligned_cols=102  Identities=25%  Similarity=0.309  Sum_probs=87.3

Q ss_pred             CCcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccCcc
Q 042915          389 NSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQ  467 (501)
Q Consensus       389 ~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~P~  467 (501)
                      +-.+.++...+.+.+|.-|+|..|+|. .+| +|.++..|+.|+++.|++.-.+.+. .++.+|..|||..|++. ..|.
T Consensus       193 N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pd  269 (565)
T KOG0472|consen  193 NLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPD  269 (565)
T ss_pred             hhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCch
Confidence            346667777777888888999999997 677 6899999999999999998655564 68999999999999998 8999


Q ss_pred             ccCCCCCCCEEEccCCcCcccCCccCC
Q 042915          468 TLSQLPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      .+.-+++|+.||+++|.|+ .+|.+++
T Consensus       270 e~clLrsL~rLDlSNN~is-~Lp~sLg  295 (565)
T KOG0472|consen  270 EICLLRSLERLDLSNNDIS-SLPYSLG  295 (565)
T ss_pred             HHHHhhhhhhhcccCCccc-cCCcccc
Confidence            9999999999999999999 6898887

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.33  E-value=3e-07  Score=84.84  Aligned_cols=85  Identities=29%  Similarity=0.390  Sum_probs=37.4

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccC-ccccCCCCCCCE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWI-PQTLSQLPILRE  477 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~-P~~~~~l~~L~~  477 (501)
                      .+.+++.|+|++|+|+. +. .+..|+.|+.|++++|+++...+.+ ..+++|+.|+|++|++...- -..+..+++|+.
T Consensus        40 ~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             T-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            35678888888888874 33 3777888888888888888654444 45788888888888886311 134667788888


Q ss_pred             EEccCCcCc
Q 042915          478 IFLQNNNLD  486 (501)
Q Consensus       478 L~Ls~N~l~  486 (501)
                      |+|.+|+++
T Consensus       118 L~L~~NPv~  126 (175)
T PF14580_consen  118 LSLEGNPVC  126 (175)
T ss_dssp             EE-TT-GGG
T ss_pred             eeccCCccc
Confidence            888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.28  E-value=1.1e-07  Score=95.84  Aligned_cols=90  Identities=30%  Similarity=0.468  Sum_probs=68.6

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCC-----------------------CCCcC-CCCCCCCCEEEc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLW-----------------------GQIPE-MKTLTALETLHL  456 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~-----------------------~~~p~-~~~l~~L~~L~L  456 (501)
                      +++++-|+|++|-+. .+|..++.+..||.|++++|+|.                       ...|+ +.+|.+|..|||
T Consensus       434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             hhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence            456666666666665 56666666666777776666554                       33333 677899999999


Q ss_pred             cCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC
Q 042915          457 ENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       457 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      .+|.+. .+|..+|+|++|++|.|++|+|.  .|....
T Consensus       513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~i  547 (565)
T KOG0472|consen  513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQI  547 (565)
T ss_pred             CCCchh-hCChhhccccceeEEEecCCccC--CCHHHH
Confidence            999999 89999999999999999999998  776544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.28  E-value=9.7e-08  Score=100.05  Aligned_cols=94  Identities=22%  Similarity=0.288  Sum_probs=79.0

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC----CCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE----MKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~----~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      +..|++|+|++|.+...-...|..|++|+.|||.+|.|.+.+.+    |.+|++|+.|+|.+|++....-.+|.++..|+
T Consensus       340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE  419 (873)
T KOG4194|consen  340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALE  419 (873)
T ss_pred             HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccc
Confidence            55778889999998877777888999999999999999988874    67899999999999999854456899999999


Q ss_pred             EEEccCCcCcccCCccCC
Q 042915          477 EIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~~~~  494 (501)
                      +|||.+|.|...-|.+|-
T Consensus       420 ~LdL~~NaiaSIq~nAFe  437 (873)
T KOG4194|consen  420 HLDLGDNAIASIQPNAFE  437 (873)
T ss_pred             eecCCCCcceeecccccc
Confidence            999999999844466665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.23  E-value=5.6e-07  Score=83.10  Aligned_cols=82  Identities=32%  Similarity=0.555  Sum_probs=25.6

Q ss_pred             CeeEEEecCCCCcccccCccccc-CCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCcccc-CCCCCCCEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIG-NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTL-SQLPILREI  478 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~-~~l~~L~~L  478 (501)
                      ..++++|+|++|.|+. +. .++ .+.+|+.|+|++|.++. ++.+..++.|+.|+|++|+++ .+.+.+ ..+++|++|
T Consensus        18 ~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            3467888888888873 33 355 57788888888888874 456777888888888888887 454444 357888888


Q ss_pred             EccCCcCc
Q 042915          479 FLQNNNLD  486 (501)
Q Consensus       479 ~Ls~N~l~  486 (501)
                      +|++|+|.
T Consensus        94 ~L~~N~I~  101 (175)
T PF14580_consen   94 YLSNNKIS  101 (175)
T ss_dssp             E-TTS---
T ss_pred             ECcCCcCC
Confidence            88888886

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.16  E-value=1.8e-07  Score=94.07  Aligned_cols=104  Identities=28%  Similarity=0.378  Sum_probs=82.2

Q ss_pred             eeecCCCCe--------eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccC-CcCCc
Q 042915          394 VTCNKSKHT--------RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLEN-NQFEG  463 (501)
Q Consensus       394 v~c~~~~l~--------~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~-N~l~g  463 (501)
                      |.|+..++.        ..++|+|..|+|+.+.+..|+.+++|+.||||+|+|+.+-| .|.+|++|..|-+-+ |+|+.
T Consensus        51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            778765543        56899999999998888999999999999999999998877 489999888776655 88985


Q ss_pred             cCccccCCCCCCCEEEccCCcCcccCCcc-CC-CCCC
Q 042915          464 WIPQTLSQLPILREIFLQNNNLDGQIPDG-LW-KPGL  498 (501)
Q Consensus       464 ~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~-~~-~~~L  498 (501)
                      .....|++|.+|+.|.+.-|++. .++.. |. ++++
T Consensus       131 l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l  166 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSL  166 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhc
Confidence            44457888888888888888887 55543 33 4444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.15  E-value=1.1e-06  Score=92.32  Aligned_cols=86  Identities=24%  Similarity=0.294  Sum_probs=65.2

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      ++.|++||||.|.|+...-++|..-.+|++|+|++|+|+..-. .|..+.+|..|.|++|+++-..+..|.+|++|+.|+
T Consensus       148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld  227 (873)
T KOG4194|consen  148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD  227 (873)
T ss_pred             HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence            5567788888888875555666666778888888888876544 477788888888888888844445677788888888


Q ss_pred             ccCCcCc
Q 042915          480 LQNNNLD  486 (501)
Q Consensus       480 Ls~N~l~  486 (501)
                      |..|+|.
T Consensus       228 LnrN~ir  234 (873)
T KOG4194|consen  228 LNRNRIR  234 (873)
T ss_pred             cccccee
Confidence            8888886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.06  E-value=4.7e-07  Score=99.50  Aligned_cols=84  Identities=30%  Similarity=0.362  Sum_probs=65.4

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      ..+|+.|+|++|+|.......+.+|+.|+.|+||+|+|+.++..+..+..|++|...+|++. .+| .+..+++|+.+||
T Consensus       382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL  459 (1081)
T ss_pred             ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence            46889999999998855556688899999999999998866555677777777777777776 666 6777777777777


Q ss_pred             cCCcCc
Q 042915          481 QNNNLD  486 (501)
Q Consensus       481 s~N~l~  486 (501)
                      +.|+|+
T Consensus       460 S~N~L~  465 (1081)
T KOG0618|consen  460 SCNNLS  465 (1081)
T ss_pred             ccchhh
Confidence            777775

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=98.04  E-value=4.6e-05  Score=78.43  Aligned_cols=146  Identities=21%  Similarity=0.240  Sum_probs=83.3

Q ss_pred             EEccCCCCC-----CcccceEEecC---ccccccCCccccc-----CCCC--CCCcceEEeecCCC-CCceeEEeeccCC
Q 042915           30 LLSCGDTVG-----LTTGRLKFLPD---KDFQFLGNTTTLK-----QPGL--LPILSTLRFFTELQ-ARKYCYVFNVTQG   93 (501)
Q Consensus        30 ~idCG~~~~-----~~~~~~~~~~D---~~~~~~g~~~~~~-----~~~~--~~~y~t~R~F~~~~-~~~~cY~~~~~~~   93 (501)
                      .++||++.+     .+.-.|.|.+.   .....-.....+.     ..+.  ..-|+|||.=...+ .-.-.+.| +.++
T Consensus       182 R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~  260 (347)
T PF12819_consen  182 RLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPG  260 (347)
T ss_pred             eecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-CCCC
Confidence            799998651     12357899853   1111111111122     1111  12599999865431 01223344 5677


Q ss_pred             CeEEEEEEeeccCCCCCCC-CCceEEEEcCeEEEEEEcccc--ccCCcceEEEEEEEecC-CceEEEEeecCCCCCCcee
Q 042915           94 DKYLVRTTYYYGGFDGGTQ-PPVFDQIIGGTKWSIVDTAED--FANGLSSYYEVVVAAVG-NSLSVCLARNNDTTSHPFI  169 (501)
Q Consensus        94 ~~ylvR~~F~~~~yd~~~~-~~~F~v~~~~~~~~~v~~~~~--~~~~~~~~~E~i~~~~~-~~l~vcf~~~~~~~~~pFI  169 (501)
                      ..|+||+||.=-....... .=.|+|++++..|.. .+...  .....+.++.+++.+.+ +.+.|+|.++..++--|+|
T Consensus       261 ~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiL  339 (347)
T PF12819_consen  261 FSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPIL  339 (347)
T ss_pred             ccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcCcee
Confidence            7899999995222111111 125999999877653 33221  11112346677777654 5799999998766334999


Q ss_pred             eeEEeeec
Q 042915          170 SAIELSKL  177 (501)
Q Consensus       170 n~iEl~~l  177 (501)
                      ||+||..|
T Consensus       340 NalEIy~v  347 (347)
T PF12819_consen  340 NALEIYKV  347 (347)
T ss_pred             EeeeeEeC
Confidence            99999864

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PLN03210 Resistant to P

Probab=97.97  E-value=1.9e-05  Score=93.64  Aligned_cols=93  Identities=24%  Similarity=0.380  Sum_probs=69.0

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      +.+|+.|+|++|++. .++..+..+++|+.|+|+++...+.+|.+..+++|+.|+|++|.....+|..++.+++|+.|++
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            457778888888876 5667777788888888887765566777777888888888887766677888888888888888


Q ss_pred             cCCcCcccCCccCC
Q 042915          481 QNNNLDGQIPDGLW  494 (501)
Q Consensus       481 s~N~l~g~lP~~~~  494 (501)
                      ++|...+.+|..+.
T Consensus       689 ~~c~~L~~Lp~~i~  702 (1153)
T PLN03210        689 SRCENLEILPTGIN  702 (1153)
T ss_pred             CCCCCcCccCCcCC
Confidence            87644446776554

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.92  E-value=5.8e-06  Score=92.52  Aligned_cols=84  Identities=25%  Similarity=0.398  Sum_probs=64.9

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      .+|+.|+|++|+|++ +|..   .++|+.|++++|+|++ +|.+  +.+|+.|+|++|+|+ .+|..++.+++|+.|+|+
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            356777888887773 4543   3567888888888875 3432  346788999999998 789999999999999999


Q ss_pred             CCcCcccCCccC
Q 042915          482 NNNLDGQIPDGL  493 (501)
Q Consensus       482 ~N~l~g~lP~~~  493 (501)
                      +|+|+|.+|..+
T Consensus       454 ~N~Ls~~~~~~L  465 (788)
T PRK15387        454 GNPLSERTLQAL  465 (788)
T ss_pred             CCCCCchHHHHH
Confidence            999998877655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.91  E-value=9e-06  Score=57.25  Aligned_cols=36  Identities=44%  Similarity=0.610  Sum_probs=21.4

Q ss_pred             CCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCc
Q 042915          450 ALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       450 ~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  486 (501)
                      +|++|+|++|+++ .+|..+++|++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4666666666666 45555666666666666666665

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.88  E-value=3.7e-06  Score=84.76  Aligned_cols=89  Identities=24%  Similarity=0.230  Sum_probs=81.7

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ..++++|+.|+|++|+|+++-+..|.++..|+.|.|..|+|...-. .|.++..|+.|+|.+|+|+-..|.+|..+.+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            5678999999999999999999999999999999999999985544 379999999999999999988999999999999


Q ss_pred             EEEccCCcCc
Q 042915          477 EIFLQNNNLD  486 (501)
Q Consensus       477 ~L~Ls~N~l~  486 (501)
                      .|+|-.|++.
T Consensus       350 ~l~l~~Np~~  359 (498)
T KOG4237|consen  350 TLNLLSNPFN  359 (498)
T ss_pred             eeehccCccc
Confidence            9999998874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.85  E-value=1.5e-06  Score=91.09  Aligned_cols=96  Identities=25%  Similarity=0.388  Sum_probs=79.2

Q ss_pred             eecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCC
Q 042915          395 TCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPI  474 (501)
Q Consensus       395 ~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~  474 (501)
                      +-..+.+.+|..|+.+.|.+. .+|..+++|.+|+.|.+..|++...++++..| .|..||+|.|++. .+|-.|.+|+.
T Consensus       159 p~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~  235 (722)
T KOG0532|consen  159 PEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRH  235 (722)
T ss_pred             CcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-ecchhhhhhhh
Confidence            333445567888888888887 67777888888999999889888777777755 4889999999998 89999999999


Q ss_pred             CCEEEccCCcCcccCCccCC
Q 042915          475 LREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       475 L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      |++|-|.+|+|. +=|..++
T Consensus       236 Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  236 LQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             heeeeeccCCCC-CChHHHH
Confidence            999999999998 6677777

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.81  E-value=1.8e-06  Score=75.23  Aligned_cols=93  Identities=19%  Similarity=0.190  Sum_probs=77.6

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      ...+|+.++|++|.+....+..-.+.+.++.|+|++|.|...+.++..++.|+.|+++.|.+. ..|+-+..|.+|..|+
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            446889999999999854444445566899999999999977778999999999999999998 6788888899999999


Q ss_pred             ccCCcCcccCCccCC
Q 042915          480 LQNNNLDGQIPDGLW  494 (501)
Q Consensus       480 Ls~N~l~g~lP~~~~  494 (501)
                      ..+|.+. +||-.+.
T Consensus       130 s~~na~~-eid~dl~  143 (177)
T KOG4579|consen  130 SPENARA-EIDVDLF  143 (177)
T ss_pred             CCCCccc-cCcHHHh
Confidence            9999988 7886654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.77  E-value=8e-06  Score=79.74  Aligned_cols=82  Identities=26%  Similarity=0.312  Sum_probs=51.0

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      .++++.|++|+|.|. .+. .+..|++|+.||||+|.++....--.+|-+.+.|.|+.|.+. .+ ..++.+-+|..||+
T Consensus       306 ~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDL  381 (490)
T ss_pred             ccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccc
Confidence            456666677776665 222 256666677777777766533221145556666677777665 22 34666778888999


Q ss_pred             cCCcCc
Q 042915          481 QNNNLD  486 (501)
Q Consensus       481 s~N~l~  486 (501)
                      ++|+|.
T Consensus       382 ~~N~Ie  387 (490)
T KOG1259|consen  382 SSNQIE  387 (490)
T ss_pred             cccchh
Confidence            999886

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.76  E-value=2.6e-06  Score=89.44  Aligned_cols=93  Identities=25%  Similarity=0.386  Sum_probs=80.4

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN  482 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~  482 (501)
                      -|+.|-+++|+++ .+|+.++.+..|..||.+.|.+...++.++.+.+|+.|.+..|++. .+|+.+..| .|..||+++
T Consensus       144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc  220 (722)
T KOG0532|consen  144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC  220 (722)
T ss_pred             cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence            4678888999988 7888889888999999999999888888999999999999999998 788888855 488899999


Q ss_pred             CcCcccCCccCC-CCCCc
Q 042915          483 NNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       483 N~l~g~lP~~~~-~~~L~  499 (501)
                      |+++ .||-.|. |+.|+
T Consensus       221 Nkis-~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  221 NKIS-YLPVDFRKMRHLQ  237 (722)
T ss_pred             Ccee-ecchhhhhhhhhe
Confidence            9999 8999988 66654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.73  E-value=4.1e-05  Score=85.97  Aligned_cols=82  Identities=18%  Similarity=0.393  Sum_probs=46.1

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN  482 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~  482 (501)
                      +|+.|+|++|+|+ .+|..+.  .+|+.|+|++|++...+..+.  .+|+.|+|++|+|. .+|..+.  ++|+.|+|++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~  292 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD  292 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence            4455555555554 2333322  245555555555553222232  36777777777777 4666553  4677777777


Q ss_pred             CcCcccCCccC
Q 042915          483 NNLDGQIPDGL  493 (501)
Q Consensus       483 N~l~g~lP~~~  493 (501)
                      |+|+ .+|..+
T Consensus       293 N~Lt-~LP~~l  302 (754)
T PRK15370        293 NSIR-TLPAHL  302 (754)
T ss_pred             Cccc-cCcccc
Confidence            7777 566543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=2.7e-05  Score=54.81  Aligned_cols=37  Identities=38%  Similarity=0.549  Sum_probs=26.6

Q ss_pred             CCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCC
Q 042915          426 TALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFE  462 (501)
Q Consensus       426 ~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~  462 (501)
                      ++|++|++++|+|+...+++++|++|+.|+|++|+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            4677888888888765555788888888888888877

...

>PLN03210 Resistant to P

Probab=97.66  E-value=7.5e-05  Score=88.59  Aligned_cols=91  Identities=22%  Similarity=0.281  Sum_probs=58.0

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCC---------------------CCCEEEccCCc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLT---------------------ALETLHLENNQ  460 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~---------------------~L~~L~Ls~N~  460 (501)
                      ++|+.|+|++|...+.+|..+++|++|+.|+|++|...+.+|....++                     +|+.|+|++|.
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~  857 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG  857 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC
Confidence            467777777777666777777788888888887765433444322333                     45555555566


Q ss_pred             CCccCccccCCCCCCCEEEccC-CcCcccCCccCC
Q 042915          461 FEGWIPQTLSQLPILREIFLQN-NNLDGQIPDGLW  494 (501)
Q Consensus       461 l~g~~P~~~~~l~~L~~L~Ls~-N~l~g~lP~~~~  494 (501)
                      ++ .+|..+..+++|+.|+|++ |+|. .+|..+.
T Consensus       858 i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~  890 (1153)
T PLN03210        858 IE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNIS  890 (1153)
T ss_pred             Cc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccc
Confidence            65 5666677777777777776 4444 5665544

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.66  E-value=6.9e-05  Score=84.20  Aligned_cols=84  Identities=25%  Similarity=0.341  Sum_probs=64.5

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      .+|+.|+|++|++. .+|..+.  .+|+.|+|++|+|+..+..+.  ++|+.|+|++|+|+ .+|..+.  ++|+.|+|+
T Consensus       241 ~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        241 DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ  312 (754)
T ss_pred             ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence            46888999999988 6676654  579999999999986443453  57999999999998 5666543  478889999


Q ss_pred             CCcCcccCCccCC
Q 042915          482 NNNLDGQIPDGLW  494 (501)
Q Consensus       482 ~N~l~g~lP~~~~  494 (501)
                      +|+|+ .+|..+.
T Consensus       313 ~N~Lt-~LP~~l~  324 (754)
T PRK15370        313 SNSLT-ALPETLP  324 (754)
T ss_pred             CCccc-cCCcccc
Confidence            99998 5776544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.65  E-value=1e-05  Score=89.21  Aligned_cols=89  Identities=28%  Similarity=0.402  Sum_probs=75.7

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN  482 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~  482 (501)
                      +|++|+|++|++. ..|..+..+.+|+.|+++.|-+...+-+..++.+|++|.|.+|++. .+|.++..+++|+.|+++.
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~  123 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF  123 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence            5889999999887 6788888889999999999988765556788899999999999888 8899999999999999999


Q ss_pred             CcCcccCCccCC
Q 042915          483 NNLDGQIPDGLW  494 (501)
Q Consensus       483 N~l~g~lP~~~~  494 (501)
                      |.+. .+|.-+.
T Consensus       124 N~f~-~~Pl~i~  134 (1081)
T KOG0618|consen  124 NHFG-PIPLVIE  134 (1081)
T ss_pred             hccC-CCchhHH
Confidence            9987 7887554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.64  E-value=6e-06  Score=80.58  Aligned_cols=90  Identities=27%  Similarity=0.345  Sum_probs=73.9

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCcc-CccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGW-IPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~-~P~~~~~l~~L~~  477 (501)
                      ..+.+|+.||||+|.|+ .+-..-.+|-+++.|.|++|.+. .+..+++|.+|..||+++|+++.. --..+|++++|++
T Consensus       326 a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~  403 (490)
T KOG1259|consen  326 AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET  403 (490)
T ss_pred             hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence            45678999999999998 45555677889999999999986 344578899999999999999732 1247999999999


Q ss_pred             EEccCCcCcccCCc
Q 042915          478 IFLQNNNLDGQIPD  491 (501)
Q Consensus       478 L~Ls~N~l~g~lP~  491 (501)
                      |.|.+|+|.+ +|+
T Consensus       404 l~L~~NPl~~-~vd  416 (490)
T KOG1259|consen  404 LRLTGNPLAG-SVD  416 (490)
T ss_pred             HhhcCCCccc-cch
Confidence            9999999994 553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.61  E-value=5.6e-05  Score=84.80  Aligned_cols=65  Identities=23%  Similarity=0.325  Sum_probs=42.6

Q ss_pred             CCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915          426 TALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       426 ~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      .+|+.|+|++|+|++.+ ..  .++|+.|+|++|+|+ .+|...   .+|+.|+|++|+|+ .||..++ ++.+
T Consensus       382 ~~L~~LdLs~N~Lt~LP-~l--~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L  447 (788)
T PRK15387        382 SGLKELIVSGNRLTSLP-VL--PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSE  447 (788)
T ss_pred             cccceEEecCCcccCCC-Cc--ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCC
Confidence            35667777777776533 22  246777788888877 466532   45777888888887 7887766 4443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.42  E-value=7.6e-05  Score=78.00  Aligned_cols=88  Identities=30%  Similarity=0.422  Sum_probs=59.4

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN  482 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~  482 (501)
                      +|+.|++++|++. .+|..+..++.|+.|++++|++....+..+.++.|+.|++++|++. .+|..+..+..|+.|.+++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence            6777777777776 4555667777777777777777755555556777777777777777 6666665566677777777


Q ss_pred             CcCcccCCccC
Q 042915          483 NNLDGQIPDGL  493 (501)
Q Consensus       483 N~l~g~lP~~~  493 (501)
                      |++. .+|..+
T Consensus       219 N~~~-~~~~~~  228 (394)
T COG4886         219 NSII-ELLSSL  228 (394)
T ss_pred             Ccce-ecchhh
Confidence            7543 344433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.42  E-value=7.7e-06  Score=71.40  Aligned_cols=90  Identities=21%  Similarity=0.324  Sum_probs=74.0

Q ss_pred             eeEEEecCCCCcccccCccc---ccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          402 TRVVSIDLKGFEISGTLPES---IGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~---~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ..+..++|+++.|- .+++.   +.....|...+|++|.+...++.| ...+.++.|+|++|+++ .+|+.+..++.|+.
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            35667888998875 45544   455567778899999999888876 56678999999999999 89999999999999


Q ss_pred             EEccCCcCcccCCccCC
Q 042915          478 IFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       478 L~Ls~N~l~g~lP~~~~  494 (501)
                      |+++.|+|. ..|.-+.
T Consensus       105 lNl~~N~l~-~~p~vi~  120 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIA  120 (177)
T ss_pred             cccccCccc-cchHHHH
Confidence            999999998 6776554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.38  E-value=6.6e-05  Score=75.56  Aligned_cols=86  Identities=22%  Similarity=0.259  Sum_probs=58.4

Q ss_pred             CeeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCCCc-----CCCCCCCCCEEEccCCcCCccCccccC-
Q 042915          401 HTRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQIP-----EMKTLTALETLHLENNQFEGWIPQTLS-  470 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-----~~~~l~~L~~L~Ls~N~l~g~~P~~~~-  470 (501)
                      +.+|+.|+|++|.+++    .++..+..+++|+.|+|++|.+++...     .+..+++|+.|++++|.+.+.....+. 
T Consensus       164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~  243 (319)
T cd00116         164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS  243 (319)
T ss_pred             CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence            4568888888888874    234445566788888888888764322     246678888888888888752222222 


Q ss_pred             ----CCCCCCEEEccCCcCc
Q 042915          471 ----QLPILREIFLQNNNLD  486 (501)
Q Consensus       471 ----~l~~L~~L~Ls~N~l~  486 (501)
                          ..++|+.|++++|.++
T Consensus       244 ~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         244 ALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHhccCCCceEEEccCCCCC
Confidence                2368888888888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.30  E-value=6.7e-05  Score=78.41  Aligned_cols=85  Identities=36%  Similarity=0.501  Sum_probs=44.6

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      .++.|+.|++++|++. .+|...+.++.|+.|++++|++...++....+..|+.|.+++|.+. ..+..+..+.++..|.
T Consensus       161 ~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~  238 (394)
T COG4886         161 NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE  238 (394)
T ss_pred             ccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccc
Confidence            3455555555555555 4444444555555555555555544433344444555555555433 3444455555555555


Q ss_pred             ccCCcCc
Q 042915          480 LQNNNLD  486 (501)
Q Consensus       480 Ls~N~l~  486 (501)
                      +.+|++.
T Consensus       239 l~~n~~~  245 (394)
T COG4886         239 LSNNKLE  245 (394)
T ss_pred             cCCceee
Confidence            5555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.21  E-value=9.2e-05  Score=74.51  Aligned_cols=86  Identities=26%  Similarity=0.336  Sum_probs=65.3

Q ss_pred             eeEEEecCCCCcccc----cCcccccCC-CCCCeeecCCCcCCCCCc-----CCCCCCCCCEEEccCCcCCc----cCcc
Q 042915          402 TRVVSIDLKGFEISG----TLPESIGNL-TALKHLRLGGNKLWGQIP-----EMKTLTALETLHLENNQFEG----WIPQ  467 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g----~~p~~~~~L-~~L~~L~Ls~N~l~~~~p-----~~~~l~~L~~L~Ls~N~l~g----~~P~  467 (501)
                      ++|++|++++|++.+    .+...+..+ ++|+.|+|++|.+++...     .+..+++|+.|+|++|.+++    .++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            459999999998873    334456667 889999999999885322     25677889999999999884    2444


Q ss_pred             ccCCCCCCCEEEccCCcCcc
Q 042915          468 TLSQLPILREIFLQNNNLDG  487 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~l~g  487 (501)
                      .+..+++|++|+|++|.+++
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             HHHhCCCCCEEeccCCccCh
Confidence            56667799999999998863

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.17  E-value=0.00012  Score=83.55  Aligned_cols=97  Identities=23%  Similarity=0.278  Sum_probs=67.5

Q ss_pred             eeEEEecCCCCc--ccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          402 TRVVSIDLKGFE--ISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       402 ~~l~~L~Ls~n~--l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      +++++|-+..|.  +.......|..|+.|+.|||++|.=-+.+| .++.|-+|++|+|+...+. .+|..+++|+.|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            467777777775  443444457778888888888776656666 4678888888888888887 788888888888888


Q ss_pred             EccCCcCcccCCccCC-CCCCc
Q 042915          479 FLQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                      ++..+.-...+|..+. +++|+
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             ccccccccccccchhhhccccc
Confidence            8887665444544444 44443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.99  E-value=6.7e-05  Score=81.05  Aligned_cols=81  Identities=26%  Similarity=0.263  Sum_probs=59.0

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      ++.++.|+|++|+++..-  .+..|+.|++|||+.|.+...+. ....++ |+.|.|++|.++. + ..+.+|++|+.||
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhhccc
Confidence            457899999999998432  68889999999999999984333 223444 7777777777762 2 2466677777777


Q ss_pred             ccCCcCc
Q 042915          480 LQNNNLD  486 (501)
Q Consensus       480 Ls~N~l~  486 (501)
                      |+.|-|+
T Consensus       261 lsyNll~  267 (1096)
T KOG1859|consen  261 LSYNLLS  267 (1096)
T ss_pred             hhHhhhh
Confidence            7777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.93  E-value=0.00043  Score=73.02  Aligned_cols=87  Identities=28%  Similarity=0.304  Sum_probs=58.4

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      .+.++..|++..|+|.+ +...+..+.+|++|+|++|+|+.. ..+..++.|+.|++++|.+. .+ ..+..+.+|+.++
T Consensus        93 ~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD  168 (414)
T ss_pred             cccceeeeeccccchhh-cccchhhhhcchheeccccccccc-cchhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence            35677778888888773 333366777888888888887643 34555666778888888776 22 2355577777778


Q ss_pred             ccCCcCcccCCc
Q 042915          480 LQNNNLDGQIPD  491 (501)
Q Consensus       480 Ls~N~l~g~lP~  491 (501)
                      +++|.+. .+..
T Consensus       169 l~~n~i~-~ie~  179 (414)
T KOG0531|consen  169 LSYNRIV-DIEN  179 (414)
T ss_pred             CCcchhh-hhhh
Confidence            8887776 4544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.92  E-value=0.00036  Score=79.76  Aligned_cols=86  Identities=28%  Similarity=0.284  Sum_probs=75.5

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ..++.|+.|||++|.=-+.+|..+++|-+|++|+|++..+...+..+++|+.|.+|++..+.-...+|.....|++|++|
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            35789999999998776799999999999999999999999777789999999999999998776777777889999999


Q ss_pred             EccCCc
Q 042915          479 FLQNNN  484 (501)
Q Consensus       479 ~Ls~N~  484 (501)
                      .+-.-.
T Consensus       648 ~l~~s~  653 (889)
T KOG4658|consen  648 RLPRSA  653 (889)
T ss_pred             Eeeccc
Confidence            886543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.00044  Score=71.00  Aligned_cols=97  Identities=24%  Similarity=0.265  Sum_probs=55.1

Q ss_pred             CcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCC--cCCCCCCCCCEEEccCCcCCcc-Cc
Q 042915          390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQI--PEMKTLTALETLHLENNQFEGW-IP  466 (501)
Q Consensus       390 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~--p~~~~l~~L~~L~Ls~N~l~g~-~P  466 (501)
                      +|..|.......+.+..|+|..|...+.-......+..|+.|||++|++....  +..+.++.|+.|+++.+.+... .|
T Consensus       210 s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~  289 (505)
T KOG3207|consen  210 SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP  289 (505)
T ss_pred             CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCC
Confidence            35544433334456667777777433333334455666777777777765443  2356677777777777766531 12


Q ss_pred             cc-----cCCCCCCCEEEccCCcCc
Q 042915          467 QT-----LSQLPILREIFLQNNNLD  486 (501)
Q Consensus       467 ~~-----~~~l~~L~~L~Ls~N~l~  486 (501)
                      +.     ...+++|++|+++.|++.
T Consensus       290 d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  290 DVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             CccchhhhcccccceeeecccCccc
Confidence            22     234566777777777764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.48  E-value=0.0033  Score=58.60  Aligned_cols=81  Identities=26%  Similarity=0.369  Sum_probs=59.3

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccCc--cccCCCCCCCEEE
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIP--QTLSQLPILREIF  479 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~P--~~~~~l~~L~~L~  479 (501)
                      ....++|++|.+..  -+.|..++.|.+|.|++|+|+.+-|.+ ..+++|..|.|.+|.|. .+-  +-+..|++|++|-
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            45678888888752  234677888888888888888877776 44677888888888876 221  2356677888888


Q ss_pred             ccCCcCc
Q 042915          480 LQNNNLD  486 (501)
Q Consensus       480 Ls~N~l~  486 (501)
                      +-+|+.+
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            8888776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.00023  Score=72.93  Aligned_cols=86  Identities=20%  Similarity=0.208  Sum_probs=62.0

Q ss_pred             CCeeEEEecCCCCcccc-cCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCc--cccCCCCCC
Q 042915          400 KHTRVVSIDLKGFEISG-TLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIP--QTLSQLPIL  475 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P--~~~~~l~~L  475 (501)
                      .+++++.|.|+.|+|+- .+-..+..+++|+.|+|..|...+.-. +..-++.|+.|||++|++- ..+  ...+.++.|
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGL  273 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccch
Confidence            45678888888888862 233445667888888998886222211 3456788999999999887 455  357788899


Q ss_pred             CEEEccCCcCc
Q 042915          476 REIFLQNNNLD  486 (501)
Q Consensus       476 ~~L~Ls~N~l~  486 (501)
                      +.|+++.+.+.
T Consensus       274 ~~Lnls~tgi~  284 (505)
T KOG3207|consen  274 NQLNLSSTGIA  284 (505)
T ss_pred             hhhhccccCcc
Confidence            99999988886

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.34  E-value=0.0011  Score=69.85  Aligned_cols=87  Identities=25%  Similarity=0.313  Sum_probs=69.9

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      +..+..+++..|.+.. +-..+..+++|..|++..|+|......+..+++|++|+|++|.|+...  .+..++.|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence            3456667788888773 445588899999999999999866555888999999999999998443  3667778999999


Q ss_pred             cCCcCcccCCc
Q 042915          481 QNNNLDGQIPD  491 (501)
Q Consensus       481 s~N~l~g~lP~  491 (501)
                      ++|.|+ .++.
T Consensus       148 ~~N~i~-~~~~  157 (414)
T KOG0531|consen  148 SGNLIS-DISG  157 (414)
T ss_pred             ccCcch-hccC
Confidence            999998 5553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.0011  Score=65.03  Aligned_cols=97  Identities=18%  Similarity=0.231  Sum_probs=64.2

Q ss_pred             chhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcC
Q 042915          359 PRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL  438 (501)
Q Consensus       359 ~~d~~al~~~~~~~~~~~~~W~~d~C~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l  438 (501)
                      ..|++.+...........-.||.-      ..|..|.|-..++++|+.|+|+.|.|...|...-..+.+|+.|-|.+..+
T Consensus        60 ~gd~~~~~~~~~~v~elDL~~N~i------SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   60 EGDVMLFGSSVTDVKELDLTGNLI------SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             chhHHHHHHHhhhhhhhhcccchh------ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            456655555444333222245432      25888888878899999999999998754443224567888888888777


Q ss_pred             CCCCc-C-CCCCCCCCEEEccCCcC
Q 042915          439 WGQIP-E-MKTLTALETLHLENNQF  461 (501)
Q Consensus       439 ~~~~p-~-~~~l~~L~~L~Ls~N~l  461 (501)
                      ...-- + +..++.++.|++|.|.+
T Consensus       134 ~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  134 SWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             Chhhhhhhhhcchhhhhhhhccchh
Confidence            65433 2 47777888888887744

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.15  E-value=0.00035  Score=75.72  Aligned_cols=80  Identities=26%  Similarity=0.347  Sum_probs=65.9

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccc-cCCCCCCCEEEcc
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQT-LSQLPILREIFLQ  481 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~-~~~l~~L~~L~Ls  481 (501)
                      +|...+.+.|.|. .+-.++.-++.|+.|||++|+++.. ..+..|+.|++|||+.|.|. .+|.. ...+ .|+.|.|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            5666778888887 6777788899999999999999843 36788999999999999998 67763 3344 49999999


Q ss_pred             CCcCc
Q 042915          482 NNNLD  486 (501)
Q Consensus       482 ~N~l~  486 (501)
                      +|.++
T Consensus       241 nN~l~  245 (1096)
T KOG1859|consen  241 NNALT  245 (1096)
T ss_pred             ccHHH
Confidence            99987

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.96  E-value=0.005  Score=59.53  Aligned_cols=80  Identities=21%  Similarity=0.299  Sum_probs=39.6

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCC--cCCCCCcC-CCCCCCCCEEEccCCcCCccCccc---cCCCCCCC
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGN--KLWGQIPE-MKTLTALETLHLENNQFEGWIPQT---LSQLPILR  476 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N--~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~---~~~l~~L~  476 (501)
                      .++.|.+.+..++..  ..+..|++|+.|.+|.|  ++.+.++- ...+++|++|+|+.|++.  +++.   +..+.+|.
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLK  119 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchh
Confidence            344444444444411  12445556666666666  44444332 234466666666666664  1222   23344555


Q ss_pred             EEEccCCcCc
Q 042915          477 EIFLQNNNLD  486 (501)
Q Consensus       477 ~L~Ls~N~l~  486 (501)
                      .|++.+|..+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            6666655544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.012  Score=40.97  Aligned_cols=34  Identities=47%  Similarity=1.031  Sum_probs=23.5

Q ss_pred             chhHHHHHHHHHhcCCCC----CCCCC----CCCCCCCCCcceeeec
Q 042915          359 PRDVVAMEELAKHFKNPP----IDWNG----DPCLPWENSWTGVTCN  397 (501)
Q Consensus       359 ~~d~~al~~~~~~~~~~~----~~W~~----d~C~~~~~~w~gv~c~  397 (501)
                      ++|+.+|++||+.+...+    .+|+.    +||     .|.||.|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence            578999999999987532    38974    455     79999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.25  E-value=0.012  Score=56.85  Aligned_cols=74  Identities=20%  Similarity=0.241  Sum_probs=54.8

Q ss_pred             CcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCC--cCCccCccccCCCCCCCEEEccCCcCcccCCccCC
Q 042915          418 LPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENN--QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       418 ~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N--~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      +....-.+..|+.|.+.+..++ ..-.+..|++|+.|.+|.|  +..+.++.....+++|++|+|++|++.  ++..+.
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhcccee-ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccc
Confidence            4444455566777777776665 2335678899999999999  777777777777799999999999997  344443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.17  E-value=0.019  Score=53.68  Aligned_cols=82  Identities=27%  Similarity=0.277  Sum_probs=65.1

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCC--CcCCCCCCCCCEEEccCCcCCccCcc----ccCCCC
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQ--IPEMKTLTALETLHLENNQFEGWIPQ----TLSQLP  473 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~--~p~~~~l~~L~~L~Ls~N~l~g~~P~----~~~~l~  473 (501)
                      .+.+|..|.|++|.|+.+-|..-.-+++|+.|.|.+|+|...  +..+..++.|++|.+-+|..+. -+.    -+..++
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp  140 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLP  140 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc-ccCceeEEEEecC
Confidence            457899999999999966666556678899999999999754  3357889999999999998872 222    366788


Q ss_pred             CCCEEEccC
Q 042915          474 ILREIFLQN  482 (501)
Q Consensus       474 ~L~~L~Ls~  482 (501)
                      +|+.||.++
T Consensus       141 ~l~~LDF~k  149 (233)
T KOG1644|consen  141 SLRTLDFQK  149 (233)
T ss_pred             cceEeehhh
Confidence            999998764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.47  E-value=0.016  Score=34.18  Aligned_cols=18  Identities=39%  Similarity=0.613  Sum_probs=7.6

Q ss_pred             CCEEEccCCcCCccCcccc
Q 042915          451 LETLHLENNQFEGWIPQTL  469 (501)
Q Consensus       451 L~~L~Ls~N~l~g~~P~~~  469 (501)
                      |++|||++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.09  E-value=0.0017  Score=61.69  Aligned_cols=86  Identities=17%  Similarity=0.153  Sum_probs=75.7

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ....+++.||++.|++. .+...|..++.|..|+++.|++.-.+.+++.+..++.+++..|.++ ..|-+++.++.++.+
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            34568999999999987 5667788899999999999999866668899999999999999998 889999999999999


Q ss_pred             EccCCcCc
Q 042915          479 FLQNNNLD  486 (501)
Q Consensus       479 ~Ls~N~l~  486 (501)
                      ++-+|.|.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99999875

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.05  E-value=0.085  Score=55.12  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=15.1

Q ss_pred             CCCEEEccCCcCCccCccccCCCCCCCEEEccCC
Q 042915          450 ALETLHLENNQFEGWIPQTLSQLPILREIFLQNN  483 (501)
Q Consensus       450 ~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N  483 (501)
                      +|+.|++++|... .+|+.+.  .+|+.|.++.|
T Consensus       157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            4555555555543 2333222  35555665554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.00  E-value=0.037  Score=32.62  Aligned_cols=20  Identities=35%  Similarity=0.414  Sum_probs=17.8

Q ss_pred             CCCEEEccCCcCcccCCccCC
Q 042915          474 ILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       474 ~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      +|++|+|++|+|+ .||++|.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            5899999999999 8998854

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.74  E-value=0.037  Score=61.98  Aligned_cols=88  Identities=19%  Similarity=0.234  Sum_probs=61.5

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCC--cCCCCCCCCCEEEccCCcCCccC--c----cccCC
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQI--PEMKTLTALETLHLENNQFEGWI--P----QTLSQ  471 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~--p~~~~l~~L~~L~Ls~N~l~g~~--P----~~~~~  471 (501)
                      ++++|..||+|+.+++..  ..++.|++|+.|-+.+=.+....  -++-+|++|+.||+|..+.....  .    +.-..
T Consensus       171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            567888888888888733  55778888888877776654322  24678899999999987765321  1    12345


Q ss_pred             CCCCCEEEccCCcCcccC
Q 042915          472 LPILREIFLQNNNLDGQI  489 (501)
Q Consensus       472 l~~L~~L~Ls~N~l~g~l  489 (501)
                      |+.|+.||.|++.+.+.+
T Consensus       249 LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINEEI  266 (699)
T ss_pred             CccccEEecCCcchhHHH
Confidence            789999999988776443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=91.94  E-value=0.031  Score=56.21  Aligned_cols=85  Identities=21%  Similarity=0.335  Sum_probs=65.8

Q ss_pred             CeeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCCCc-----CC-CCCCCCCEEEccCCcCCc----cCc
Q 042915          401 HTRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQIP-----EM-KTLTALETLHLENNQFEG----WIP  466 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-----~~-~~l~~L~~L~Ls~N~l~g----~~P  466 (501)
                      +++|+.|||..|-++.    .+...++.+++|+.|+++.+.+...=.     .+ ...++|+.|.|.+|.++.    .+-
T Consensus       212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la  291 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA  291 (382)
T ss_pred             CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence            4689999999999873    345678888999999999998864322     13 457899999999999863    223


Q ss_pred             cccCCCCCCCEEEccCCcC
Q 042915          467 QTLSQLPILREIFLQNNNL  485 (501)
Q Consensus       467 ~~~~~l~~L~~L~Ls~N~l  485 (501)
                      ..+...+.|..|+|++|++
T Consensus       292 ~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  292 ACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhcchhhHHhcCCcccc
Confidence            3456678999999999998

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.82  E-value=0.094  Score=28.84  Aligned_cols=13  Identities=46%  Similarity=0.519  Sum_probs=5.5

Q ss_pred             CCCEEEccCCcCc
Q 042915          474 ILREIFLQNNNLD  486 (501)
Q Consensus       474 ~L~~L~Ls~N~l~  486 (501)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.76  E-value=0.13  Score=31.43  Aligned_cols=22  Identities=50%  Similarity=0.837  Sum_probs=16.0

Q ss_pred             CCCCCEEEccCCcCcccCCccCC
Q 042915          472 LPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       472 l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      +++|+.|+|++|+|+ .||.+.+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            456788888888887 7776644

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.76  E-value=0.13  Score=31.43  Aligned_cols=22  Identities=50%  Similarity=0.837  Sum_probs=16.0

Q ss_pred             CCCCCEEEccCCcCcccCCccCC
Q 042915          472 LPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       472 l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      +++|+.|+|++|+|+ .||.+.+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            456788888888887 7776644

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.41  E-value=0.086  Score=52.18  Aligned_cols=84  Identities=30%  Similarity=0.392  Sum_probs=52.5

Q ss_pred             eeEEEecCCCCccc--ccCcccccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccC-ccccCCCCCCCE
Q 042915          402 TRVVSIDLKGFEIS--GTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWI-PQTLSQLPILRE  477 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~--g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~-P~~~~~l~~L~~  477 (501)
                      .++++|+|.+|.|+  ..+...+.+|+.|+.|+|+.|++...|..+ ..+.+|+.|-|.+..+...- ...+..++.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            46677777777776  234444566777777777777776666555 46667777777776665432 223455666666


Q ss_pred             EEccCCcC
Q 042915          478 IFLQNNNL  485 (501)
Q Consensus       478 L~Ls~N~l  485 (501)
                      |+++.|.+
T Consensus       151 lHmS~N~~  158 (418)
T KOG2982|consen  151 LHMSDNSL  158 (418)
T ss_pred             hhhccchh
Confidence            66666643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.24  E-value=0.011  Score=57.88  Aligned_cols=78  Identities=29%  Similarity=0.260  Sum_probs=56.7

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc--CCCCCCCCCEEEccCCcCCccCccc-----cCCC
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTALETLHLENNQFEGWIPQT-----LSQL  472 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~Ls~N~l~g~~P~~-----~~~l  472 (501)
                      +++-|+.|.||-|+|+..-  .+..++.|+.|+|..|.|..+-.  -+.++++|+.|+|..|.-.|.-+..     +.-|
T Consensus        39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L  116 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL  116 (388)
T ss_pred             hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence            4677888899999887432  26778889999999888864332  1588888999999888877766653     3456


Q ss_pred             CCCCEEE
Q 042915          473 PILREIF  479 (501)
Q Consensus       473 ~~L~~L~  479 (501)
                      ++|+.||
T Consensus       117 PnLkKLD  123 (388)
T KOG2123|consen  117 PNLKKLD  123 (388)
T ss_pred             ccchhcc
Confidence            6776664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=90.20  E-value=0.11  Score=58.31  Aligned_cols=87  Identities=17%  Similarity=0.265  Sum_probs=65.5

Q ss_pred             CCCeeEEEecCCCCcccc-cCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCc-cCccccCCCCCCC
Q 042915          399 SKHTRVVSIDLKGFEISG-TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEG-WIPQTLSQLPILR  476 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g-~~P~~~~~l~~L~  476 (501)
                      ..++.|++|.+++-.+.. .......++++|..||+|+.+++.. -.++.|++|+.|.+.+=.+.. ..=..+.+|++|+
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            357899999999987742 2334457889999999999988744 457889999999887766652 1122577899999


Q ss_pred             EEEccCCcCc
Q 042915          477 EIFLQNNNLD  486 (501)
Q Consensus       477 ~L~Ls~N~l~  486 (501)
                      .||+|..+..
T Consensus       224 vLDIS~~~~~  233 (699)
T KOG3665|consen  224 VLDISRDKNN  233 (699)
T ss_pred             eeeccccccc
Confidence            9999977654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.19  E-value=0.7  Score=39.53  Aligned_cols=76  Identities=16%  Similarity=0.203  Sum_probs=26.9

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      +|+.+.+.++ +...-...|.++.+|+.+.+.+ .+..... .|..+++|+.+++..+ +...-...|.++ .|+.+.+.
T Consensus        36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            3444444443 3323333444444555555543 2221111 2444555555555443 332222334444 55555554


Q ss_pred             C
Q 042915          482 N  482 (501)
Q Consensus       482 ~  482 (501)
                      .
T Consensus       112 ~  112 (129)
T PF13306_consen  112 S  112 (129)
T ss_dssp             T
T ss_pred             C
Confidence            3

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.18  E-value=0.25  Score=27.12  Aligned_cols=13  Identities=46%  Similarity=0.672  Sum_probs=5.2

Q ss_pred             CCCEEEccCCcCC
Q 042915          450 ALETLHLENNQFE  462 (501)
Q Consensus       450 ~L~~L~Ls~N~l~  462 (501)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555544

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.21  E-value=0.031  Score=54.69  Aligned_cols=87  Identities=24%  Similarity=0.323  Sum_probs=64.7

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCcc--ccCCCCCCCEEE
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ--TLSQLPILREIF  479 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~--~~~~l~~L~~L~  479 (501)
                      .+++.|+.=+++|..+  ....+|+.|+.|.||=|+|+.. ..+..+++|+.|.|..|.|. .+-+  .+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence            3444555555555421  2256799999999999999854 34778899999999999997 4443  478999999999


Q ss_pred             ccCCcCcccCCcc
Q 042915          480 LQNNNLDGQIPDG  492 (501)
Q Consensus       480 Ls~N~l~g~lP~~  492 (501)
                      |..|+-.|.-+..
T Consensus        95 L~ENPCc~~ag~n  107 (388)
T KOG2123|consen   95 LDENPCCGEAGQN  107 (388)
T ss_pred             hccCCcccccchh
Confidence            9999988766543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=87.55  E-value=0.1  Score=51.02  Aligned_cols=65  Identities=26%  Similarity=0.394  Sum_probs=42.4

Q ss_pred             cccCCCCCCeeecCCCcCCCCCcC-----CCCCCCCCEEEccCCcCCccCcc-ccC----CC---------CCCCEEEcc
Q 042915          421 SIGNLTALKHLRLGGNKLWGQIPE-----MKTLTALETLHLENNQFEGWIPQ-TLS----QL---------PILREIFLQ  481 (501)
Q Consensus       421 ~~~~L~~L~~L~Ls~N~l~~~~p~-----~~~l~~L~~L~Ls~N~l~g~~P~-~~~----~l---------~~L~~L~Ls  481 (501)
                      .+.++++|+..+||.|.+....|+     +++-+.|.+|.|++|.+. .+.. .++    .+         +.|+.....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            456678888888888887655553     466777888888888775 2221 122    11         357777777


Q ss_pred             CCcCc
Q 042915          482 NNNLD  486 (501)
Q Consensus       482 ~N~l~  486 (501)
                      .|+|.
T Consensus       166 rNRle  170 (388)
T COG5238         166 RNRLE  170 (388)
T ss_pred             cchhc
Confidence            78775

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.39  E-value=0.65  Score=39.70  Aligned_cols=88  Identities=19%  Similarity=0.254  Sum_probs=52.6

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      .+|+.+.+.. .+...-...|.++++|+.+.+.++ +..... .|.++++|+.+.+.+ .+...-...|..+++|+.+.+
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            4677777774 566566677888889999999886 554433 378888899999976 444334456777899999999


Q ss_pred             cCCcCcccCCccCC
Q 042915          481 QNNNLDGQIPDGLW  494 (501)
Q Consensus       481 s~N~l~g~lP~~~~  494 (501)
                      ..| +. .++...+
T Consensus        89 ~~~-~~-~i~~~~f  100 (129)
T PF13306_consen   89 PSN-IT-EIGSSSF  100 (129)
T ss_dssp             TTT--B-EEHTTTT
T ss_pred             Ccc-cc-EEchhhh
Confidence            766 54 4554433

>PRK15386 type III secretion protein GogB; Provisional

Probab=87.26  E-value=0.76  Score=48.17  Aligned_cols=80  Identities=18%  Similarity=0.323  Sum_probs=54.5

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC-cCCccCccccCCCCCCCEEE
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN-QFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N-~l~g~~P~~~~~l~~L~~L~  479 (501)
                      .+++.|++++|.|+ .+|. +  -.+|+.|.++++.--..+|+ +  ..+|+.|++++| .+. .+|.      +|+.|+
T Consensus        52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence            56889999999887 4552 1  23699999988443334553 3  358999999998 554 5664      466677


Q ss_pred             ccCCcC--cccCCccCC
Q 042915          480 LQNNNL--DGQIPDGLW  494 (501)
Q Consensus       480 Ls~N~l--~g~lP~~~~  494 (501)
                      ++.|.+  -+.+|.++.
T Consensus       119 L~~n~~~~L~~LPssLk  135 (426)
T PRK15386        119 IKGSATDSIKNVPNGLT  135 (426)
T ss_pred             eCCCCCcccccCcchHh
Confidence            776653  236887765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=86.94  E-value=0.27  Score=49.66  Aligned_cols=85  Identities=20%  Similarity=0.211  Sum_probs=52.1

Q ss_pred             eeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCCCc-----CCCCCCCCCEEEccCCcCCccCcc----c
Q 042915          402 TRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQIP-----EMKTLTALETLHLENNQFEGWIPQ----T  468 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-----~~~~l~~L~~L~Ls~N~l~g~~P~----~  468 (501)
                      +.|..+.++.|.|..    .+-..+..+++|+.|||..|-++..-.     .+..+++|+.|+++.|.++..=..    .
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            356667777776641    123345667777888888777753322     246667777777777777632211    1


Q ss_pred             c-CCCCCCCEEEccCCcCc
Q 042915          469 L-SQLPILREIFLQNNNLD  486 (501)
Q Consensus       469 ~-~~l~~L~~L~Ls~N~l~  486 (501)
                      + ...++|+.|.|.+|.++
T Consensus       265 l~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HhccCCCCceeccCcchhH
Confidence            2 23467778888877775

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.41  E-value=0.016  Score=55.30  Aligned_cols=76  Identities=25%  Similarity=0.295  Sum_probs=65.3

Q ss_pred             cccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915          421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       421 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      .+......+.||++.|++...-..+..++.|..|+++.|.+. .+|..++.+..+..+++.+|+++ ..|.+++ .+.+
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            456677889999999998766666888899999999999998 88999999999999999999998 8998887 5443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.23  E-value=0.97  Score=27.41  Aligned_cols=19  Identities=42%  Similarity=0.634  Sum_probs=12.8

Q ss_pred             CCCCCEEEccCCcCCccCcc
Q 042915          448 LTALETLHLENNQFEGWIPQ  467 (501)
Q Consensus       448 l~~L~~L~Ls~N~l~g~~P~  467 (501)
                      |++|+.|+|++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            456777777777777 4454

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.23  E-value=0.97  Score=27.41  Aligned_cols=19  Identities=42%  Similarity=0.634  Sum_probs=12.8

Q ss_pred             CCCCCEEEccCCcCCccCcc
Q 042915          448 LTALETLHLENNQFEGWIPQ  467 (501)
Q Consensus       448 l~~L~~L~Ls~N~l~g~~P~  467 (501)
                      |++|+.|+|++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            456777777777777 4454

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	501
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-10
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-09

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 396 CNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETL 454
           C   K+T +  + L+    +G +P ++ N + L  L L  N L G IP  + +L+ L  L
Sbjct: 389 CQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 455 HLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
            L  N  EG IPQ L  +  L  + L  N+L G+IP GL
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 396 CNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETL 454
           C   K+T +  + L+    +G +P ++ N + L  L L  N L G IP  + +L+ L  L
Sbjct: 386 CQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 455 HLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
            L  N  EG IPQ L  +  L  + L  N+L G+IP GL
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 359 PRDVVAMEELAKHFKNPPI--DW--NGDPCLPWENSWTGVTCNKSKHT-RVVSIDLKGFE 413
           P+D  A+ ++ K   NP     W    D C     +W GV C+    T RV ++DL G  
Sbjct: 5   PQDKQALLQIKKDLGNPTTLSSWLPTTDCC---NRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 414 ISGT--LPESIGNLTALKHLRLGG-NKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTL 469
           +     +P S+ NL  L  L +GG N L G IP  +  LT L  L++ +    G IP  L
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 470 SQLPILREIFLQNNNLDGQIP 490
           SQ+  L  +    N L G +P
Sbjct: 122 SQIKTLVTLDFSYNALSGTLP 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	501
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  109 bits (276), Expect = 6e-27
 Identities = 40/159 (25%), Positives = 57/159 (35%), Gaps = 36/159 (22%)

Query: 370 KHFKNPPI--DWNG--DPCLPWENSWTGVTCN-KSKHTRVVSIDLKGFEISGTL------ 418
           K   NP     W    D C     +W GV C+  ++  RV ++DL G  +          
Sbjct: 16  KDLGNPTTLSSWLPTTDCC---NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 419 ---------------------PESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHL 456
                                P +I  LT L +L +    + G IP  +  +  L TL  
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 457 ENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
             N   G +P ++S LP L  I    N + G IPD    
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 89.1 bits (222), Expect = 8e-20
 Identities = 26/88 (29%), Positives = 40/88 (45%)

Query: 405 VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGW 464
             +DL    + G      G+    + + L  N L   + ++     L  L L NN+  G 
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259

Query: 465 IPQTLSQLPILREIFLQNNNLDGQIPDG 492
           +PQ L+QL  L  + +  NNL G+IP G
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.0 bits (201), Expect = 5e-17
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALET-LHLENN 459
             +V++D     +SGTLP SI +L  L  +   GN++ G IP    + + L T + +  N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
           +  G IP T + L  L  + L  N L+G        
Sbjct: 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.3 bits (199), Expect = 8e-17
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQL 472
           ++G +P +  NL  L  + L  N L G       +    + +HL  N     + + +   
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243

Query: 473 PILREIFLQNNNLDGQIPDGL 493
             L  + L+NN + G +P GL
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTAL-KHLRLGGNKLWGQIP-EMKTLTALETLHLENN 459
             +V I   G  ISG +P+S G+ + L   + +  N+L G+IP     L  L  + L  N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIP 490
             EG            ++I L  N+L   + 
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENN 459
           I GTLP+ +  L  L  L +  N L G+IP+   L   +     NN
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (252), Expect = 1e-22
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 17/130 (13%)

Query: 370 KHFKNPPI--DWNG--DPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEIS---GTLPESI 422
               +  +  DW+   +PC     ++ GVTC      +V SIDL    ++     +  S+
Sbjct: 22  DVLPDKNLLPDWSSNKNPC-----TFDGVTCR---DDKVTSIDLSSKPLNVGFSAVSSSL 73

Query: 423 GNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIP--QTLSQLPILREIFL 480
            +LT L+ L L  + + G +   K   +L +L L  N   G +    +L     L+ + +
Sbjct: 74  LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133

Query: 481 QNNNLDGQIP 490
            +N LD    
Sbjct: 134 SSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.5 bits (228), Expect = 1e-19
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQL 472
           ++G +P  + N T L  + L  N+L G+IP  +  L  L  L L NN F G IP  L   
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 473 PILREIFLQNNNLDGQIPDGLWK 495
             L  + L  N  +G IP  ++K
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFK 560

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.6 bits (223), Expect = 5e-19
 Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQ 460
           + +VS+ L    +SGT+P S+G+L+ L+ L+L  N L G+IP E+  +  LETL L+ N 
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
             G IP  LS    L  I L NN L G+IP  + +
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.2 bits (222), Expect = 6e-19
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQL 472
            +G +P ++ N + L  L L  N L G IP  + +L+ L  L L  N  EG IPQ L  +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 473 PILREIFLQNNNLDGQIPDGLWK 495
             L  + L  N+L G+IP GL  
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSN 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.2 bits (222), Expect = 7e-19
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
             +  + + G +ISG +   +     L+ L +  N     IP +   +AL+ L +  N+ 
Sbjct: 178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235

Query: 462 EGWIPQTLSQLPILREIFLQNNNLDGQIPD 491
            G   + +S    L+ + + +N   G IP 
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPP 265

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 1e-18
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENN 459
             +  +DL G    G +P   G+ + L+ L L  N   G++P   +  +  L+ L L  N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 460 QFEGWIPQTLSQLPI-LREIFLQNNNLDGQIPDGLWKPGLN 499
           +F G +P++L+ L   L  + L +NN  G I   L +   N
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 5e-18
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQ 460
             +  +D+     S  +P  +G+ +AL+HL + GNKL G     + T T L+ L++ +NQ
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494
           F G IP     L  L+ + L  N   G+IPD L 
Sbjct: 259 FVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 290

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 3e-17
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQ 460
           +     ++      G    +  N  ++  L +  N L G IP E+ ++  L  L+L +N 
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

Query: 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
             G IP  +  L  L  + L +N LDG+IP  +
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 4e-17
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 406 SIDLKGFEISGTLPESI-GNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEG 463
            + L   + +G +P+ + G    L  L L GN  +G +P    + + LE+L L +N F G
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

Query: 464 WIP-QTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ 501
            +P  TL ++  L+ + L  N   G++P+ L     ++ 
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 3e-16
 Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQ 460
             ++ +D+    +SG +P+ IG++  L  L LG N + G IP E+  L  L  L L +N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

Query: 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
            +G IPQ +S L +L EI L NNNL G IP+ 
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 3e-16
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 414 ISGTLPESIGN--LTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLS 470
            SG +  ++       L+ L L  N   G+IP  +   + L +LHL  N   G IP +L 
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 471 QLPILREIFLQNNNLDGQIPDGLWK 495
            L  LR++ L  N L+G+IP  L  
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMY 464

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 1e-15
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESI---GNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLEN 458
             +  +DL    ISG              LKHL + GNK+ G +   +    LE L + +
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR-CVNLEFLDVSS 209

Query: 459 NQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
           N F   IP  L     L+ + +  N L G     +  
Sbjct: 210 NNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST 245

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 4e-15
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQF 461
           +         E  G   E +  L+      +      G          ++  L +  N  
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 462 EGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
            G+IP+ +  +P L  + L +N++ G IPD +
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 5e-15
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENN 459
           T +  +++   +  G +P     L +L++L L  NK  G+IP+        L  L L  N
Sbjct: 247 TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIP 490
            F G +P       +L  + L +NN  G++P
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 3e-14
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQL 472
           ++G +P+ IG L  L  L+L  N   G IP E+    +L  L L  N F G IP  + + 
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 473 PILREIFLQNNNLDGQIPDGL 493
                  +  N + G+    +
Sbjct: 562 SGK----IAANFIAGKRYVYI 578

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 3e-12
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGN--KLWGQIP-EMKTLTALETLHLENNQFE 462
           S  +    I+G     I N    K     GN  +  G    ++  L+     ++ +  + 
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 463 GWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           G    T      +  + +  N L G IP  +
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 415 SGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENN 459
            G +P+++  LT L  + L  N L G IPEM            NN
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 374 NPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRL 433
            P  +WN +  L    +  GV+ N +   RV  + L+GF  SG +P++IG LT L+ L L
Sbjct: 55  QPGANWNFNKELDMWGAQPGVSLNSN--GRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112

Query: 434 GGNKLWGQI-----PEMKTLTALETLHLENNQFEGWIPQTLS--QLPILREIFLQNNNLD 486
           G +             +    + E        ++              L +  + ++   
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172

Query: 487 GQIPDGL 493
             I    
Sbjct: 173 KSIKKSS 179

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.2 bits (180), Expect = 7e-14
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 415 SGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPI 474
           +  +  S+  +  L  L    N+L G++P   +   L +L+L  NQ              
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQ 378

Query: 475 LREIFLQNNNLDGQIPDGL 493
           +  +   +N L   IP+  
Sbjct: 379 VENLSFAHNKL-KYIPNIF 396

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 12/99 (12%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL---------WGQIPEMKTLTALE 452
             +  +++        LP  +  L  ++ + +  N+          W  + +      ++
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 453 TLHLENNQF-EGWIPQTLSQLPILREIFLQNNNLDGQIP 490
            +++  N      +  +L ++  L  +    N L+G++P
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 408 DLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQF----- 461
           + +  +   T      NL  L  + +       ++P  +K L  ++ +++  N+      
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 462 ---EGWIPQTLSQLPILREIFLQNNNL-DGQIPDGL 493
              +            ++ I++  NNL    +   L
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 413 EISGTLPESIGNLTALKHLRLGGNKLWGQIPE---MKTLTALETLHLENNQFEGWIPQTL 469
                  E+  N   L  + L  NKL  ++ +     TL  L  + L  N F    P   
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

Query: 470 SQLPILREIFLQN------NNLDGQIPDGLWK 495
                L+   ++N      N    + P+G+  
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 408 DLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ 467
           D +G       PE I    +L  L++G N +  ++ E K    +  L +++N        
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE-KITPNISVLDIKDNPNISIDLS 605

Query: 468 TLSQLPILREIFLQNNNL 485
            +          L  +  
Sbjct: 606 YVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 9/86 (10%)

Query: 416 GTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEG-------WIPQ 467
             L  +      +  + L  N++     E+  T + L +++L  N              +
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 468 TLSQLPILREIFLQNNNLDGQIPDGL 493
                 +L  I L+ N L   + D  
Sbjct: 483 NFKNTYLLTSIDLRFNKLTK-LSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 21/106 (19%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP------------------ 443
            +   I      I+  + +++  LT L+   +G +    +                    
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 444 --EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDG 487
             +   L  L  + + N      +P  L  LP ++ I +  N    
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 389 NSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL--------WG 440
            ++  +     K   V SI+L   +IS    E     + L  + L GN L          
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 441 QIPEMKTLTALETLHLENNQFEGWIPQTL--SQLPILREIFLQNNNLDGQIPDGLWK 495
           +    K    L ++ L  N+    +      + LP L  I L  N+     P     
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 11/92 (11%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIP---EMKTLTALETLHLENNQFEGWIPQTLS 470
           I+       G    +++L    NKL   IP   + K+++ +  +    N+      +   
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 471 QLPI-------LREIFLQNNNLDGQIPDGLWK 495
            L         +  I L NN +     +    
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFST 455

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 12/117 (10%), Positives = 31/117 (26%), Gaps = 19/117 (16%)

Query: 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLE 457
           +   + ++   +       ++ +S         +    N +      +  LT L   ++ 
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMG 214

Query: 458 NNQFEG-------------------WIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
           N+ F                             L  L ++ + N     ++P  L  
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 417 TLPE--SIGNLTALKHLRLGGNKLWGQI--------PEMKTLTALETLHLENNQFEGWIP 466
            +P      +++ +  +    N++            P       + +++L NNQ   +  
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 467 QTLSQLPILREIFLQNNNLDGQIPDGLWKP 496
           +  S    L  I L  N L   IP    K 
Sbjct: 451 ELFSTGSPLSSINLMGNMLTE-IPKNSLKD 479

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 417 TLPESI--GNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLEN------NQFEGWIPQ 467
            L +      L  L  + L  N    + P +    + L+   + N      N+     P+
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 468 TLSQLPILREIFLQNNNLDGQIPDGL 493
            ++  P L ++ + +N++   + + +
Sbjct: 561 GITLCPSLTQLQIGSNDIRK-VNEKI 585

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 382 DPCLPWENSWTGVTCNKSKHTRV--------VSIDLKGFEISGTLPESIGNLTALKHLRL 433
           +PC+    + T   C +    ++         ++DL    +      S  +   L+ L L
Sbjct: 1   EPCVEVVPNIT-YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 434 GGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
              ++        ++L+ L TL L  N  +       S L  L+++     NL       
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 493 L 493
           +
Sbjct: 120 I 120

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 5e-14
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTALETLHLENNQFEGWIPQTLSQ 471
                      L++L+ L++ GN             L  L  L L   Q E   P   + 
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 472 LPILREIFLQNNNLDGQIPD 491
           L  L+ + + +NN       
Sbjct: 493 LSSLQVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPI 474
           T+  +   L  L+HL    + L          +L  L  L + +           + L  
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 475 LREIFLQNNNLDGQIPDGLWKPGLNIQ 501
           L  + +  N+        ++    N+ 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLT 473

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 6e-12
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLE 457
                +  +DL   EI      +  +L+ L  L L GN +          L++L+ L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 458 NNQFEGWIPQTLSQLPILREIFLQNNNLDG-QIPDGL 493
                      +  L  L+E+ + +N +   ++P+  
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 412 FEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ-TLS 470
               G   +S    T+LK+L L  N +         L  LE L  +++  +         
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 471 QLPILREIFLQNNNLDGQIPD 491
            L  L  + + + +       
Sbjct: 419 SLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 407 IDLKGFEISGTL-PESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGW 464
           + + G        P+    L  L  L L   +L    P    +L++L+ L++ +N F   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 465 IPQTLSQLPILREIFLQNNNLDGQIPDGL 493
                  L  L+ +    N++       L
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 415 SGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALE----TLHLENNQFEGWIPQTL 469
           S  LPE   NLT L+HL L  NK+        + L  +     +L L  N      P   
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 470 SQLPILREIFLQNNNLDGQIPDGL 493
            ++  L ++ L+NN     +    
Sbjct: 198 KEIR-LHKLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 10/102 (9%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHL 456
           +  + +  +++               L +L+ L    N +     +      ++L  L+L
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 457 ENNQFEG-----WIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
             N F          Q +     L    ++   ++   P   
Sbjct: 551 TQNDFACTCEHQSFLQWIKDQRQL---LVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 5/94 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALK----HLRLGGNKLWGQIPEMKTLTALETLHLE 457
           T +  +DL   +I       +  L  +      L L  N +    P       L  L L 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 458 NNQFEGWIPQT-LSQLPILREIFLQNNNLDGQIP 490
           NN     + +T +  L  L    L       +  
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 397 NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHL 456
           + S +     ++L   +        + +L  L      G   + ++     L +LE L L
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD----LPSLEFLDL 354

Query: 457 ENNQ--FEGWIPQTLSQLPILREIFLQNNNLDGQIPD 491
             N   F+G   Q+      L+ + L  N +     +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 1/72 (1%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLP 473
               + +    LT +    L    +  ++ +       + L L N +F  +    L  L 
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 474 ILREIFLQNNNL 485
            L     +  N 
Sbjct: 329 RLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLH 455
                  +S+DL    ++   P +   +  L  L L  N     + +  ++ L  LE   
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 456 LENNQFEG------WIPQTLSQLPILREIFLQNNNLDGQIPD 491
           L   +F        +    L  L  L     +   LD  + D
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQ 460
           T +  ++L   ++      +    + L  L +G N +    PE+ + L  L+ L+L++N+
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
                 +T +    L E+ L +N++     +  
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM---KTLTALETLHLENNQFE 462
           ++DL    +S T   +   L  L+ L L  NK+     E       ++L+ L L +NQ +
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 463 GWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
            + P     +  L  +FL N  L   + + L
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 389 NSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--K 446
            + T  T     H+ +  ++L   +IS    ++   L  L+ L LG N++  ++     +
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 447 TLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDG 487
            L  +  ++L  N++      + + +P L+ + L+   L  
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLE 457
           ++++++ S+D+    IS   PE    L  LK L L  N+L     +     T L  LHL 
Sbjct: 46  TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 458 NNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           +N  +        +   L  + L +N L        
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQL 472
           +S    ++    T L  L L  N +             L TL L +N        T  QL
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 473 PILREIFLQNNNLDGQIPDGL 493
             L+E+ L NN +     + L
Sbjct: 145 ENLQELLLSNNKIQALKSEEL 165

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTL-----TALETLHL 456
             +  ++++  +I G        L  LK+L L  +    +    +T      + L  L+L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 457 ENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKP 496
             N+         S L  L  + L  N +  ++    W+ 
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 415 SGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLP 473
            G     +  L+ L  L L  N       E+ K L  L+ + L  N          +   
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 474 ILREIFLQNNNLDGQIPD 491
            L+ + LQ N +      
Sbjct: 585 SLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQI---PEMKTLTALETLHLEN 458
             +  I L   +       S   + +L+ L L    L          + L  L  L L N
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 459 NQFEGWIPQTLSQLPILREIFLQNNNL 485
           N         L  L  L  + LQ+NNL
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKL---------WGQIPEMKTLTALETLHLENNQFEGW 464
           I+    + +  L  L+ L L  N L          G I  +K L+ L  L+LE+N F+  
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 465 IPQTLSQLPILREIFLQNNNLDGQIPD 491
             +    L  L+ I L  NNL+     
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 402 TRVVSIDLKGFEISGTLPESIG---NLTALKHLRLGGNKLWGQIPEMKT---LTALETLH 455
            R+  + L   ++  +L E +      T++++L L  ++L             T L  L 
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 456 LENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPD 491
           L  N        + + LP L   FL+ NN+      
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQ 460
           + +  ++L+         E   +L  LK + LG N L      +     +L++L+L+ N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 461 FEGWIPQTLS-QLPILREIFLQNNNLDGQIPDGLW 494
                 +        L E+ ++ N  D       W
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 389 NSWTGV----TCNKSKHTRVVSIDLKGFEISGTLPESIGNL--TALKHLRLGGNKLWGQI 442
                      C +  +T + ++ L   ++S T   +   L  T L  L L  N L    
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 443 PEM-KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPD 491
            +    L  LE   LE N  +     +L  L  +R + L+ +     I  
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 406 SIDLKGFEISGTLP-ESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEG 463
            +DL   EI   L  +    L  +  + L  NK           + +L+ L L     + 
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 464 --WIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
               P     L  L  + L NNN+     D L
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM----KTLTALETLH 455
            ++ +  ++L   +I    P     +  L  L L   +L   + E        T++  L 
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 456 LENNQFEGWIPQTLSQLPI--LREIFLQNNNLDGQIPDGLWK 495
           L N+Q       T   L    L  + L  NNL+    D    
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPIL 475
            +P+ +   T +  L L  N+L           + L +L +  N      P+   +LP+L
Sbjct: 18  QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 476 REIFLQNNNLDGQIPDGLWKP 496
           + + LQ+N L           
Sbjct: 76  KVLNLQHNELSQLSDKTFAFC 96

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP----------EMKTLTAL 451
            ++    L+   I      S+  L  +++L L  +     I             + L  L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 452 ETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
           E L++E+N   G      + L  L+ + L N+  
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 409 LKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIP- 466
                ++     S+ + + L  L L  NK+     +    L  LE L L  N+    +  
Sbjct: 365 TSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 467 QTLSQLPILREIFLQNNNLDGQIPD 491
           Q    L  + EI+L  N       +
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRN 448

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLEN 458
               V SI+L+          +    + L+ L L    L  ++P  +  L+ L+ L L  
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSA 310

Query: 459 NQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
           N+FE     + S  P L  + ++ N    ++  G
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM----KTLTALETLHLENNQF 461
            ++L    +  +  +    L AL+HL L GN       +     +TL  LE L L     
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 462 EGWIPQTLSQLPILREIFLQNNNLDGQIPD 491
                   + L ++  + L +N L     +
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 1/91 (1%)

Query: 404 VVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFE 462
              ++     +      +   L  L  L L   +++    +  ++   L+TL L  N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 463 GWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
                 LS    L+ +F     +       L
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPL 125

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 402 TRVVSIDLKGFEISGTL-PESIGNLTALKHLRLGGNKLWGQIP---EMKTLTALETLHLE 457
             +  + +KG      L    + NL  L+ L L  + +        +++ L+ L++L+L 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 458 NNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKP 496
            N+      +   + P L  + L    L  +     ++ 
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 408 DLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIP 466
           DL   +I     ++  +   L  L L  N L            AL+ L            
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 467 QTLSQLPILREIFLQNNNLDGQIPD 491
             L     L  ++L +N++      
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQL 472
           +      ++    ALKHL      +             LE+L+L +N             
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 473 PILREIFLQNNNLDGQIPDGL 493
             L+ +  QNN +     + +
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDM 173

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQL 472
           IS      + N   L+ L LG N +             L+ L  +NN       + +S L
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 473 PILREIFLQ-NNNLDGQIPDGLWK 495
                + L  N N    I  G + 
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFD 200

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 21/86 (24%), Positives = 35/86 (40%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
            R+  + L   ++S     +  +L  + H+ L  N+L     E  +      L+L +N  
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHI 535

Query: 462 EGWIPQTLSQLPILREIFLQNNNLDG 487
              +P  L  L   R I L+ N LD 
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQ 460
           + +  +DL    +S  LP  +  L+ LK L L  NK             +L  L ++ N 
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 461 FEGWI-PQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLN 499
               +    L  L  LRE+ L +++++      L    L+
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEG 463
           S++L   E      E+      L+ L L   +L  +  +   + L  L+ L+L ++  + 
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 464 WIPQTLSQLPILREIFLQNNNLDGQIPD 491
              Q    LP L+ + LQ N+       
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 6/112 (5%)

Query: 389 NSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGN--LTALKHLRLGGNKLWGQIPEMK 446
           N   G+           S++  G +    + + + N  + +L              P + 
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 447 ---TLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
                 ++E+++L+ + F      T      L+E+ L   +L  ++P GL  
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVG 299

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 21/83 (25%), Positives = 23/83 (27%), Gaps = 7/83 (8%)

Query: 413 EISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQ 471
           EI GTLP S       + L    N L          L  L  L L   Q       T   
Sbjct: 26  EIPGTLPNS------TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79

Query: 472 LPILREIFLQNNNLDGQIPDGLW 494
              L  + L  N L       L 
Sbjct: 80  QHRLDTLVLTANPLIFMAETALS 102

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALE--TLHLEN 458
             + S+ L    IS            LK L    N +     E M +L      +L+L  
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 459 NQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           N   G I        + + +          I  GL
Sbjct: 189 NDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKH--LRLGGNKLWGQIPEMKTLTALETLHLENN 459
            ++  +D +   I     E + +L    +  L L GN + G  P        ++L+    
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 460 QFEGWIPQTLSQLPI--LREIFLQNNNLDGQIPD 491
           Q    I + L    I  L     ++ + +   P 
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGW 464
             +    +       S  NL  L  + L       Q+P  +  L  L++L++  N+    
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 465 ---------IPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGL 498
                    +       P ++  ++  NNL+   P       +
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKM 572

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 18/142 (12%)

Query: 360 RDVVAMEELAKHFKNPPIDWNGDPCLP------WE--------NSWTGVTCNKSKHTRVV 405
           +D  A++ + +        +             W             GV  + +   RV 
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN--GRVT 326

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEG 463
            + L GF   G +P++IG LT LK L  G +           + LT   +   ++     
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 464 WIPQTLSQLPILREIFLQNNNL 485
           +    L     L    L  + +
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAI 408

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 416 GTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPIL 475
             + ++I  LT L+ +    +               E  + +  +       + S L  L
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIA----VDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 476 REIFLQNNNLDGQIPDGLWK 495
            ++ L N     Q+PD L+ 
Sbjct: 494 TDVELYNCPNMTQLPDFLYD 513

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478
             S+  +  L  L    NK+   +    T   L  L L+ NQ E       +    +  +
Sbjct: 566 SASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 479 FLQNNNLDGQIPDGLWKPGL 498
              +N L   IP+      +
Sbjct: 625 GFSHNKLKY-IPNIFNAKSV 643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 13/96 (13%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL---------WGQIP-EMKTLTAL 451
             +  ++L        LP+ + +L  L+ L +  N+          W ++  +  T   +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 452 ETLHLENNQFEGWIPQ--TLSQLPILREIFLQNNNL 485
           +  ++  N  E   P   +L ++  L  +   +N +
Sbjct: 551 QIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV 585

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 11/92 (11%)

Query: 413 EISGTLPESIGNLTALKHLRLGGNKLWGQIPE---MKTLTALETLHLENNQFEGWIPQTL 469
                   +  N   L  + L  NKL   + +     TL  L  + +  N F    P   
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772

Query: 470 SQLPILREI------FLQNNNLDGQIPDGLWK 495
                L+          + N +  Q P G+  
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 7e-10
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 12/114 (10%)

Query: 392 TGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL--------WGQIP 443
              + +  K     ++ L   EI     E     + +  + L  N +          +  
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 444 EMKTLTALETLHLENNQFEGWIPQTL--SQLPILREIFLQNNNLDGQIPDGLWK 495
             K    L T+ L  N+    +      + LP L  + +  N      P     
Sbjct: 723 NYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN 774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 417 TLPE--SIGNLTALKHLRLGGNKLWGQIPE------MKTLTALETLHLENNQFEGWIPQT 468
            +P   +  ++  +  +    NK+  +                 T+ L  N+ + +  + 
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 469 LSQLPILREIFLQNNNLDGQIPDGLWKP 496
            +    +  I L NN +   IP+   KP
Sbjct: 693 FATGSPISTIILSNNLM-TSIPENSLKP 719

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 408 DLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF-EGWIP 466
           D +G  I    P  I    +L  L++G N +  ++ E K    L  L + +N      + 
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE-KLTPQLYILDIADNPNISIDVT 845

Query: 467 QTLSQLPILREIFLQNNN 484
                +     + L +  
Sbjct: 846 SVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQT--LSQL 472
              E+ G    L  L+L  N++  +IPE        +E L   +N+ +  IP       +
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSV 643

Query: 473 PILREIFLQNNNLDGQIPDGLWKPGL 498
            ++  +    N +  +  +       
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDD 669

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 417 TLPESI--GNLTALKHLRLGGNKL------WGQIPEMKTLTALETLHLENNQFEGWIPQT 468
           +L +      L  L ++ +  N             ++K          E N+     P  
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 469 LSQLPILREIFLQNNNLDGQIPDGL 493
           ++  P L ++ + +N++   + + L
Sbjct: 802 ITTCPSLIQLQIGSNDIRK-VDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 9/98 (9%)

Query: 409 LKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFE----- 462
           +     + +             + L  N++     E+  T + + T+ L NN        
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 463 --GWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGL 498
                        +L  I L+ N L   + D      L
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL 752

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHL 456
            +     V+++L+   +    P+    L+ L+H+ +    L  ++P  M+    LETL L
Sbjct: 77  DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTL 134

Query: 457 ENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
             N     +P +++ L  LRE+ ++      ++P+ L
Sbjct: 135 ARNPLRA-LPASIASLNRLRELSIRACPELTELPEPL 170

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPIL 475
           +LP SI NL  LK L++  + L   +   +  L  LE L L         P        L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 476 REIFLQNNNLDGQIPDGLWK 495
           + + L++ +    +P  + +
Sbjct: 256 KRLILKDCSNLLTLPLDIHR 275

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 408 DLKGFEISGTLPESIGNLTALKHLRL-GGNKLWGQIP-EMKTLTALETLHLENNQFEGWI 465
           DL+G       P   G    LK L L   + L   +P ++  LT LE L L        +
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 466 PQTLSQLPILREIFLQNNNLDGQIP 490
           P  ++QLP    I +  +       
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLEN-NQFEGWIPQTLSQLPI 474
            L  +I +L  L+ L L G       P        L+ L L++ +     +P  + +L  
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQ 278

Query: 475 LREIFLQNNNLDGQIPDGL 493
           L ++ L+      ++P  +
Sbjct: 279 LEKLDLRGCVNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 408 DLKGFEISGTLPESIGN---------LTALKHLRLGGNKLWGQIP-EMKTLTALETLHLE 457
            ++       LPE + +         L  L+ LRL    +   +P  +  L  L++L + 
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214

Query: 458 NNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           N+     +   +  LP L E+ L+        P   
Sbjct: 215 NSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLP 473
           TLP  I  LT L+ L L G     ++P  +  L A   + +  +             P
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 9/112 (8%), Positives = 25/112 (22%), Gaps = 24/112 (21%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLT---------------- 449
           ++  +G        + +       +          +                        
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLL 75

Query: 450 ------ALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
                     L L +       P    +L  L+ + +    L  ++PD + +
Sbjct: 76  EDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           +    + N+T L +L +  +K+   +  +  LT L +L L  NQ E   P  L+ L  L 
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLH 202

Query: 477 EIFLQNNNLDGQIP 490
                 N +    P
Sbjct: 203 YFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           +   ++ +LT LK L +G N++   I  +  L+ L +L L NNQ      + +  L  L 
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQI-SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 477 EIFLQNNNL 485
            +FL  N++
Sbjct: 315 TLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             + NL+ L  L +G N++   I  +K LT L+ L++ +NQ        L+ L  L  +F
Sbjct: 237 SPLANLSQLTWLEIGTNQI-SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 480 LQNNNLDGQIPDGLWK 495
           L NN L  +  + +  
Sbjct: 294 LNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILRE 477
              + NL+ L  L L  N+L  +  E+   LT L TL L  N      P  L+ L  +  
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337

Query: 478 IFLQNNNL 485
               N  +
Sbjct: 338 ADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 9e-09
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           T   ++ NLT L+ L L  + +   I  +  LT + +L+L  N         LS +  L 
Sbjct: 101 TDISALQNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLN 158

Query: 477 EIFLQNNNL 485
            + +  + +
Sbjct: 159 YLTVTESKV 167

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             + +LT+L +     N++   I  +  +T L +L + NN+     P  L+ L  L  + 
Sbjct: 193 SPLASLTSLHYFTAYVNQI-TDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249

Query: 480 LQNNNL 485
           +  N +
Sbjct: 250 IGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             + NLT +  L LG N     +  +  +T L  L +  ++ +   P  ++ L  L  + 
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 480 LQNNNLDGQIP 490
           L  N ++   P
Sbjct: 184 LNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
             +  + + G +++    + I  LT L++L L GN++   I  +  L  L  L++  N+ 
Sbjct: 44  ESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNKI 100

Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
                  L  L  LRE++L  +N+
Sbjct: 101 T--DISALQNLTNLRELYLNEDNI 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 7e-08
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
              +   L+   ++     +   L ++  L + G K+   I  ++ LT LE L+L  NQ 
Sbjct: 22  AEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV-ASIQGIEYLTNLEYLNLNGNQI 78

Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
               P  LS L  L  +++  N +
Sbjct: 79  TDISP--LSNLVKLTNLYIGTNKI 100

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 8e-08
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             + N+T L  L++G NK+   +  +  L+ L  L +  NQ        +  L  L+ + 
Sbjct: 215 TPVANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLN 271

Query: 480 LQNNNL 485
           + +N +
Sbjct: 272 VGSNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQ 460
           S+ L   ++     E IG LT L  L L  N +   I  + +L+ +++    N  
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWI 465
           ++      I+   P    +L       L    +   +   + L ++  L +   +     
Sbjct: 4   TLATLPAPINQIFP--DADLAEGIRAVLQKASV-TDVVTQEELESITKLVVAGEKVAS-- 58

Query: 466 PQTLSQLPILREIFLQNNNLDGQIP 490
            Q +  L  L  + L  N +    P
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDISP 83

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEG 463
            +D+               LT+L  L++ GN              T L  L L   Q E 
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 464 WIPQTLSQLPILREIFLQNNNLDGQIPD 491
                   L  L+ + + +NNL      
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLE 457
           S  + +  +DL   EI     ++   L  L +L L GN +    P     LT+LE L   
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 458 NNQFEGWIPQTLSQLPILREIFLQNNNL 485
             +        + QL  L+++ + +N +
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 2/87 (2%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPI 474
            +  +   L  L+HL    + L          +L  L  L +     +         L  
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 475 LREIFLQNNNLDGQIPDGLWKPGLNIQ 501
           L  + +  N+        ++    N+ 
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLT 476

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 1/91 (1%)

Query: 404 VVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFE 462
             +IDL    +      S  N + L+ L L   ++     +    L  L  L L  N  +
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 463 GWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
            + P + S L  L  +      L       +
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPI 124

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEG-WIPQTLSQ 471
           I    P S   LT+L++L     KL          L  L+ L++ +N      +P   S 
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 472 LPILREIFLQNNNLDGQIPDGL 493
           L  L  + L  N +     + L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDL 173

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQ 460
           T +  +DL   ++          L  L+ L +  N L          L +L TL    N+
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 461 FEGWIPQTLSQLPILREIFLQNNNLD 486
            E            L    L NN++ 
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQL 472
              TL     N T L  L L   +L      +  TL  L+ L++ +N          +QL
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 473 PILREIFLQNNNLDGQIPD 491
             L  +    N ++     
Sbjct: 521 YSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIP-QTLSQLPILREIF 479
           S     +L+HL L  N           L  L+ L  +++  +          L  L  + 
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 480 LQNNNLDGQIPD 491
           +   N       
Sbjct: 431 ISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 415 SGTLPESIGNLTALKHLRLGGNKLWGQIP---EMKTLTALETLHLENNQFEGWIPQTLSQ 471
            G++      L +L +L L  N L              +L  L L  N     +      
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMG 397

Query: 472 LPILREIFLQNNNLDGQIPDGLWK 495
           L  L+ +  Q++ L        + 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFL 421

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 415 SGTLPESIGNLTALKHLRLGGNKLWGQIPEM-----KTLTALETLHLENNQFEGWIPQTL 469
           S  LP    NLT L H+ L  N +            +      +L +  N  + +I    
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA 200

Query: 470 SQLPILREIFLQNNNLDGQIPDGLWK 495
            Q   L E+ L+ N     I     +
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQ 226

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPIL 475
            +P+ I   ++ K++ L  N L           + L+ L L   + E    +    L  L
Sbjct: 25  KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82

Query: 476 REIFLQNNNLDGQIPDGLW 494
             + L  N +    P    
Sbjct: 83  SNLILTGNPIQSFSPGSFS 101

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 10/87 (11%), Positives = 24/87 (27%), Gaps = 4/87 (4%)

Query: 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENN 459
               +    L               L  +  + L G  +   + ++      ++L +   
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRC 317

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLD 486
           Q + +    L     L+ + L  N   
Sbjct: 318 QLKQFPTLDLPF---LKSLTLTMNKGS 341

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
              E   +   L+HL L  N ++  +        L+TL L +N+   ++         + 
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 477 EIFLQNNNLDGQIPDGL 493
            I L+NN L   I   L
Sbjct: 218 WISLRNNKLV-LIEKAL 233

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWI 465
            +DL G  +S      +   T L+ L L  N L  +  ++++L+ L TL L NN      
Sbjct: 38  ELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNYV---- 92

Query: 466 PQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
            Q L   P +  +   NNN+  ++     +
Sbjct: 93  -QELLVGPSIETLHAANNNI-SRVSCSRGQ 120

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            +   +     LK L L  NKL    PE ++   +  + L NN+    I + L     L 
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 477 EIFLQNNNLDGQIPDGLWKPGLNIQ 501
              L+ N          +     +Q
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQ 265

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 418 LPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           + E   N    K  ++  + L   +  + ++   ++ L L  N         L+    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 477 EIFLQNNNL 485
            + L +N L
Sbjct: 62  LLNLSSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 7/66 (10%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
           + +    +++ L    N +  ++         + ++L NN+              ++ + 
Sbjct: 93  QELLVGPSIETLHAANNNI-SRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 480 LQNNNL 485
           L+ N +
Sbjct: 151 LKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTALETLHLENN 459
            R     +    +   L     +   +K L L GN L  QI   ++   T LE L+L +N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSN 68

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNL 485
                    L  L  LR + L NN +
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
            + +L+ L+ L L  N     + E+    ++ETLH  NN     +    S+    + I+L
Sbjct: 75  DLESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNISR-VS--CSRGQGKKNIYL 127

Query: 481 QNNNLDGQIPDG 492
            NN +   + D 
Sbjct: 128 ANNKIT-MLRDL 138

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFE-GWIPQTLSQLPI 474
            +     +   +  + L  NKL   I   ++    LE   L  N F  G +    S+   
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 475 LREIFLQNNN 484
           ++ +  Q   
Sbjct: 264 VQTVAKQTVK 273

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 420 ESIGNLTALKHLRLGGNKL-WGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478
             I  L+ L+ LR+ G  +   +IP +  LT+L  L + ++  +  I   ++ LP +  I
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 479 FLQNNNL 485
            L  N  
Sbjct: 142 DLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
             +  I L    ++      I     +K L +           +  L+ LE L +     
Sbjct: 44  NSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHA-TNYNPISGLSNLERLRIMGKDV 100

Query: 462 EGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
                  LS L  L  + + ++  D  I   +
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWI 465
            +D+       ++   I  L  +  + L  N     I  +KTL  L++L+++ +    + 
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR 175

Query: 466 PQTLSQLPILREIFLQNNNL 485
              +   P L +++  +  +
Sbjct: 176 G--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWG-QIPEMKTLTALETLHLE 457
           S  + +  + + G +++     ++  LT+L  L +  +      + ++ TL  + ++ L 
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 458 NNQFEGWIPQTLSQLPILREIFLQNNNLD 486
            N     I   L  LP L+ + +Q + + 
Sbjct: 145 YNGAITDI-MPLKTLPELKSLNIQFDGVH 172

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 382 DPCLPWENSWTGVTCNKSKHTRV--------VSIDLKGFEISGTLPESIGNLTALKHLRL 433
           +PC+    + T   C +    ++         ++DL    +      S  +   L+ L L
Sbjct: 1   EPCVEVVPNIT-YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 434 GGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPD 491
              ++   I +   ++L+ L TL L  N  +       S L  L+++     NL      
Sbjct: 60  SRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 492 GLWK 495
            +  
Sbjct: 119 PIGH 122

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKT---LTALETLHLENNQFEGWIPQTLSQLP 473
           T+  +   L  L+HL    + L  Q+ E      L  L  L + +           + L 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 474 ILREIFLQNNNLDGQIPDGL 493
            L  + +  N+        +
Sbjct: 446 SLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 415 SGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQL 472
              LP+    L  L  L L   +L  Q+      +L++L+ L++ +NQ +        +L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 473 PILREIFLQNNNLDGQIPDGLW 494
             L++I+L  N  D   P   +
Sbjct: 518 TSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQ 460
             +  +DL   EI      +  +L+ L  L L GN +          L++L+ L      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 461 FEGWIPQTLSQLPILREIFLQNNNL 485
                   +  L  L+E+ + +N +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 415 SGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ--TLSQL 472
            G   +S    T+LK+L L  N +         L  LE L  +++  +  + +      L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSL 420

Query: 473 PILREIFLQNNNLDGQIPDGLWK 495
             L  + + + +      +G++ 
Sbjct: 421 RNLIYLDISHTHTRV-AFNGIFN 442

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKL--WGQIPEMKTLTALETLHLENNQFEGWIPQTLSQ 471
           ++      IG+L  LK L +  N +  +        LT LE L L +N+ +      L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 472 LPILREIF----LQNNNLDGQIPDG 492
           L  +  +     L  N ++  I  G
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPG 195

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 415 SGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALE----TLHLENNQFEGWIPQTL 469
           S  LPE   NLT L+HL L  NK+        + L  +     +L L  N     I    
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA 196

Query: 470 SQLPILREIFLQNNNLDGQIPDGL 493
            +   L ++ L+NN     +    
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTC 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 10/112 (8%)

Query: 383 PCLPWENSWTGVTCNKSKHTRVVSIDLKGFE---ISGTLPESIG---NLTALKHLRLGGN 436
               +   W  +     K  +  ++ LK  +    +     +     +L +L+ L L  N
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 437 KLWGQ---IPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
            L  +          T+L+ L L  N     +      L  L  +  Q++NL
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWI 465
            +DL G  +S      +   T L+ L L  N L  +  ++++L+ L TL L NN      
Sbjct: 38  ELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNYV---- 92

Query: 466 PQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
            Q L   P +  +   NNN+  ++     +
Sbjct: 93  -QELLVGPSIETLHAANNNI-SRVSCSRGQ 120

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            +   +     LK L L  NKL    PE ++   +  + L NN+    I + L     L 
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 477 EIFLQNNNLDGQIPDGLWKPGLNIQ 501
              L+ N          +     +Q
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQ 265

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 418 LPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           + E   N    K  ++  + L   +  + ++   ++ L L  N         L+    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 477 EIFLQNNNL 485
            + L +N L
Sbjct: 62  LLNLSSNVL 70

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQ 460
            R     +    +   L     +   +K L L GN L           T LE L+L +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 461 FEGWIPQTLSQLPILREIFLQNNNL 485
                   L  L  LR + L NN +
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYV 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 7/66 (10%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
           + +    +++ L    N +  ++         + ++L NN+              ++ + 
Sbjct: 93  QELLVGPSIETLHAANNNI-SRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 480 LQNNNL 485
           L+ N +
Sbjct: 151 LKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
            + +L+ L+ L L  N     + E+    ++ETLH  NN                + I+L
Sbjct: 75  DLESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNISRVSCSRGQG---KKNIYL 127

Query: 481 QNNNLDGQIPDG 492
            NN +   + D 
Sbjct: 128 ANNKIT-MLRDL 138

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 26/112 (23%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKL--------WGQIPEMKTL--------- 448
           +I L   +I+       G  + +++L L  N++              ++ L         
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 449 -------TALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
                    L+TL L +N+   ++         +  I L+NN L   I   L
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFE-GWIPQTLSQLPI 474
            +     +   +  + L  NKL   I   ++    LE   L  N F  G +    S+   
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 475 LREIFL-QNNNLDGQIPDGLWKPGL 498
           ++ +       L GQ  +    P L
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTL 288

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 6e-09
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
             V  +DL    +   LP ++  L  L+ L+   N L   +  +  L  L+ L L NN+ 
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVDGVANLPRLQELLLCNNRL 520

Query: 462 EGW-IPQTLSQLPILREIFLQNNNL 485
           +     Q L   P L  + LQ N+L
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 5e-08
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 377 IDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGN 436
                             +  K ++  V  + L   ++  T+   +  L  + HL L  N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHN 473

Query: 437 KLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLD 486
           +L    P +  L  LE L   +N  E      ++ LP L+E+ L NN L 
Sbjct: 474 RLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQ 521

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             +  LT L  L+LG N++   I  +  LTAL  L L  NQ E   P  +S L  L  + 
Sbjct: 259 APLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315

Query: 480 LQNNNLDGQIP 490
           L  NN+    P
Sbjct: 316 LYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
            +V ++      I     + +  L  L  +    N+L   I  +K LT L  + + NNQ 
Sbjct: 46  DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQI 102

Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
               P  L+ L  L  + L NN +
Sbjct: 103 ADITP--LANLTNLTGLTLFNNQI 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478
            + + NLT L+ L +  NK+   I  +  LT LE+L   NNQ     P  L  L  L E+
Sbjct: 170 LKPLANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 479 FLQNNNLDG 487
            L  N L  
Sbjct: 227 SLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             +G LT L  L L GN+L   I  + +LT L  L L NNQ     P  LS L  L E+ 
Sbjct: 215 TPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271

Query: 480 LQNNNLDG 487
           L  N +  
Sbjct: 272 LGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
               ++ +LT L  L L  N++   +  +  LT L  L L  NQ     P  L+ L  L 
Sbjct: 234 KDIGTLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALT 290

Query: 477 EIFLQNNNLDGQIP 490
            + L  N L+   P
Sbjct: 291 NLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           +    +  LT L+ L    N++   I  +  LT L+ L L  NQ +     TL+ L  L 
Sbjct: 190 SDISVLAKLTNLESLIATNNQI-SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLT 246

Query: 477 EIFLQNNNLDGQIP 490
           ++ L NN +    P
Sbjct: 247 DLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWI 465
            + L    IS   P  + +LT L+ L    NK+   +  +  LT +  L   +NQ     
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQISDLT 369

Query: 466 PQTLSQLPILREIFLQNNNLDGQIPDGL 493
           P  L+ L  + ++ L +        +  
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYK 395

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           +   S+ NLT +  L  G N++   +  +  LT +  L L +  +        + + I  
Sbjct: 344 SDVSSLANLTNINWLSAGHNQI-SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 477 EIFLQNNNL 485
            +      L
Sbjct: 403 TVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             I NL  L +L L  N +   I  + +LT L+ L   NN+       +L+ L  +  + 
Sbjct: 303 SPISNLKNLTYLTLYFNNI-SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLS 359

Query: 480 LQNNNLDGQIP 490
             +N +    P
Sbjct: 360 AGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             + NLT L  + +  N++   I  +  LT L  L L NNQ     P  L  L  L  + 
Sbjct: 84  TPLKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140

Query: 480 LQNNNL 485
           L +N +
Sbjct: 141 LSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           +   ++  LT+L+ L  G       +  +  LT LE L + +N+        L++L  L 
Sbjct: 147 SDISALSGLTSLQQLSFGNQVT--DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLE 202

Query: 477 EIFLQNNNLDGQIPDG 492
            +   NN +    P G
Sbjct: 203 SLIATNNQISDITPLG 218

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
              +   L    ++ T+     +L  +  L+     +   I  ++ L  L  ++  NNQ 
Sbjct: 24  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNNQL 80

Query: 462 EGWIPQTLSQLPILREIFLQNNNLDGQIP 490
               P  L  L  L +I + NN +    P
Sbjct: 81  TDITP--LKNLTKLVDILMNNNQIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWI 465
            + L   +I+    + + NLT L  L L  N +   I  +  LT+L+ L   N   +   
Sbjct: 116 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQVTD--- 169

Query: 466 PQTLSQLPILREIFLQNNNL 485
            + L+ L  L  + + +N +
Sbjct: 170 LKPLANLTTLERLDISSNKV 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 3/71 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
            +   L       LG   +         L  + TL  +    +      +  L  L +I 
Sbjct: 18  FTDTALAEKMKTVLGKTNV-TDTVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQIN 74

Query: 480 LQNNNLDGQIP 490
             NN L    P
Sbjct: 75  FSNNQLTDITP 85

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 8e-09
 Identities = 71/504 (14%), Positives = 146/504 (28%), Gaps = 133/504 (26%)

Query: 27  QDFL--LSCGDTVGLTTGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTEL---QA 81
             F+    C D   +    L     ++   +     +       +  TLR F  L   Q 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILS---KEEIDHI-----IMSKD--AVSGTLRLFWTLLSKQE 76

Query: 82  RKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSY 141
                 F        ++R  Y                     K+ ++   +      S  
Sbjct: 77  EMV-QKFVEE-----VLRINY---------------------KF-LMSPIKTEQRQPSMM 108

Query: 142 YEVVVAAVGNSLSVCLARNNDTTSHPFISAIEL-SKLDDSLYNTTDLNKFAL-------- 192
             + +          L  +N   +   +S ++   KL  +L          +        
Sbjct: 109 TRMYIEQRDR-----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 193 SSIARSSFGDDARIS-FPDDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFLSSI 251
           + +A                +F   W + K+ N  E     +       +     + S  
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQ--KLLYQI-DPNWTSRS 217

Query: 252 TTTKGKPLQIQWPPGPLPNSRYYIALYFQENRAP----------SPESWRVFNVSVNGNT 301
             +    L+I          +  +    +               + ++W  FN+S     
Sbjct: 218 DHSSNIKLRIHS-------IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---- 266

Query: 302 FFKDLNVTT------NGVAVYGNEWPLSGQTNITMTPRNDMPVGPIIS--AGEIFQLLP- 352
             K L +TT      + ++            ++T+TP        ++        Q LP 
Sbjct: 267 --KIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPR 320

Query: 353 LAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDL--- 409
              TT PR  +++  +A+  ++    W+      W++    V C+K       S+++   
Sbjct: 321 EVLTTNPR-RLSI--IAESIRDGLATWD-----NWKH----VNCDKLTTIIESSLNVLEP 368

Query: 410 ----KGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLH----LENNQF 461
               K F+     P S  ++     L L    +W  + +   +  +  LH    +E    
Sbjct: 369 AEYRKMFDRLSVFPPSA-HIPT-ILLSL----IWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
           E     T+S   I  E+ ++  N 
Sbjct: 423 ES----TISIPSIYLELKVKLENE 442

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 4/82 (4%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKT---LTALETLHLENNQFEGWIPQTLSQLP 473
           T+  +   L  L+HL    + L  Q+ E      L  L  L + +           + L 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150

Query: 474 ILREIFLQNNNLDGQIPDGLWK 495
            L  + +  N+        ++ 
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFT 172

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQF-EGWIPQTLSQLPILREIFL 480
           +L  L +L +                L++LE L +  N F E ++P   ++L  L  + L
Sbjct: 124 SLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 481 QNNNLDGQIPDGL 493
               L+ Q+    
Sbjct: 183 SQCQLE-QLSPTA 194

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQ 471
               LP+    L  L  L L   +L  Q+      +L++L+ L++ +N F          
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 472 LPILREIFLQNNNLDGQIPDGLWKP 496
           L  L+ +    N++         + 
Sbjct: 222 LNSLQVLDYSLNHIM-TSKKQELQH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKT---LTALETLHLEN 458
           +    ++L+  ++          LT L  L L  N L  +    ++    T+L+ L L  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 459 NQFEGWIPQTLSQLPILREIFLQNNNL 485
           N     +      L  L  +  Q++NL
Sbjct: 88  NGVIT-MSSNFLGLEQLEHLDFQHSNL 113

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPI-L 475
           P +  +L++L+ L +  N     +     K L +L+ L    N       Q L   P  L
Sbjct: 192 PTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250

Query: 476 REIFLQNNNLD 486
             + L  N+  
Sbjct: 251 AFLNLTQNDFA 261

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478
             +   L  LK+L LG   +   +P +  L  LE L +  N F    P +   L  L+++
Sbjct: 189 EGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 479 FLQNNNLDGQIPDG 492
           ++ N+ +   I   
Sbjct: 248 WVMNSQVS-LIERN 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 12/113 (10%)

Query: 394 VTCNKSKHTRV--------VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE- 444
           V C +   + V          ++L    I     ++  +L  L+ L+LG N +  QI   
Sbjct: 59  VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVG 117

Query: 445 -MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKP 496
               L +L TL L +N            L  LRE++L+NN +   IP   +  
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNR 169

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 424 NLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
            L  L+ L + GN    +I       L++L+ L + N+Q           L  L E+ L 
Sbjct: 216 PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 482 NNNLDGQIPDGLWKPGLNIQ 501
           +NNL   +P  L+ P   + 
Sbjct: 275 HNNLS-SLPHDLFTPLRYLV 293

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENN 459
             +  +++ G       P S   L++LK L +  +++   I       L +L  L+L +N
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHN 276

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLD 486
                     + L  L E+ L +N  +
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENN 459
             +  + L    I      +   L +L  L L  N L   IP    + L+ L  L L NN
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNN 157

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
             E       +++P L  + L        I +G
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHL-ENNQFEGWIPQTLSQLPIL 475
             +   L+ L+ L L  N +   IP      + +L  L L E  + E         L  L
Sbjct: 140 SGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 476 REIFLQNNNL 485
           + + L   N+
Sbjct: 199 KYLNLGMCNI 208

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
           +L  L HL L GN++   +PE   + L +L+ L L  N+     P     L  L  ++L 
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 482 NNNLDGQIPDGLWKPGLNIQ 501
            NNL   +P     P   +Q
Sbjct: 210 ANNLS-ALPTEALAPLRALQ 228

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLP 473
            L   +   L AL++L L  N L   +P+   + L  L  L L  N+      +    L 
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 474 ILREIFLQNNNLDGQIPDG 492
            L  + L  N +   +   
Sbjct: 178 SLDRLLLHQNRVA-HVHPH 195

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 27/111 (24%), Positives = 35/111 (31%), Gaps = 13/111 (11%)

Query: 394 VTCNKSKHTRV--------VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM 445
            +C +     V          I L G  IS     S      L  L L  N L  +I   
Sbjct: 16  TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAA 74

Query: 446 --KTLTALETLHLENNQFEGWIP-QTLSQLPILREIFLQNNNLDGQIPDGL 493
               L  LE L L +N     +   T   L  L  + L    L  ++  GL
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGL 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPI 474
            +P  I    A + + L GN++   +P    +    L  L L +N          + L +
Sbjct: 25  AVPVGI--PAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 475 LREIFLQNNNLDGQIPDGLWKP 496
           L ++ L +N     +    +  
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHG 103

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 13/132 (9%)

Query: 382 DPCLPWE--NSWTGVTCNKSKHTRV-------VSIDLKGFEISGTLPESIGNLTALKHLR 432
           DP    E         C      +V         +DL    I+     S   L  L+ L+
Sbjct: 2   DPG-TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLK 60

Query: 433 LGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL-DGQI 489
           +        I     + L++L  L L+ NQF        + L  L  + L   NL    +
Sbjct: 61  VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120

Query: 490 PDGLWKPGLNIQ 501
               +KP  +++
Sbjct: 121 SGNFFKPLTSLE 132

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 407 IDLKGFEISGTLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEG 463
           + ++       +  +    L++L  L+L  N+   Q+       L  LE L L     +G
Sbjct: 59  LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDG 117

Query: 464 WI--PQTLSQLPILREIFLQNNNLDGQIPDGL 493
            +        L  L  + L++NN+    P   
Sbjct: 118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 417 TLPESI-GNLTALKHLRLGGNKL-WGQIPEM--KTLTALETLHLENNQFEGWIPQTL-SQ 471
            L       L  L+ L L    L    +     K LT+LE L L +N  +   P +    
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 472 LPILREIFLQNNNLDGQIPDGLWKP 496
           +     + L  N +   I +     
Sbjct: 153 MRRFHVLDLTFNKVK-SICEEDLLN 176

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 416 GTLPESI-GNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQL 472
           G++   +  NL  L+ L L  N +   + +     L  L+ L L+ NQ +        +L
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394

Query: 473 PILREIFLQNNNLD 486
             L++I+L  N  D
Sbjct: 395 TSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 395 TCNKSKHTRVVSIDLKGFEISGTLPESI-GNLTALKHLRLGGNKLWGQIPEM--KTLTAL 451
           T    + + V + DL   +I   L +S+  + T L+ L L  N++  +I +     LT L
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHL 325

Query: 452 ETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
             L+L  N       +    L  L  + L  N++   + D  
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQS 366

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
            LT L  L L  N L G I     + L  LE L L  N       Q+   LP L+E+ L 
Sbjct: 321 GLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379

Query: 482 NNNLDGQIPDG 492
            N L   +PDG
Sbjct: 380 TNQLKS-VPDG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 11/126 (8%)

Query: 377 IDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLT-------ALK 429
           +  NG      +  +  +   K +   + +    G     T  +   N T        +K
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278

Query: 430 HLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDG 487
              L  +K+   + +      T LE L L  N+           L  L ++ L  N L G
Sbjct: 279 TCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-G 336

Query: 488 QIPDGL 493
            I   +
Sbjct: 337 SIDSRM 342

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478
             +   L+ L++L L    L  +IP +  L  L+ L L  N      P +   L  L+++
Sbjct: 178 EGAFEGLSNLRYLNLAMCNL-REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 479 FLQNNNLDGQIPDG 492
           ++  + +   I   
Sbjct: 237 WMIQSQIQ-VIERN 249

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENN 459
            ++  +DL G  +S   P S   L  L+ L +  +++   I       L +L  ++L +N
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHN 265

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLD 486
                     + L  L  I L +N  +
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 424 NLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
            L  L  L L GN L   I     + L  L+ L +  +Q +         L  L EI L 
Sbjct: 205 PLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263

Query: 482 NNNLDGQIPDGLWKPGLNIQ 501
           +NNL   +P  L+ P  +++
Sbjct: 264 HNNLT-LLPHDLFTPLHHLE 282

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENN 459
             +  + L    I      +   L  L  L L  N+L   IP      L+ L+ L L NN
Sbjct: 88  RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNN 146

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
             E       +++P LR + L        I +G
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHL-ENNQFEGWIPQTLSQLPIL 475
             +   L+ LK L L  N +   IP      + +L  L L E  +           L  L
Sbjct: 129 NGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 476 REIFLQNNNLDGQIPD 491
           R + L   NL  +IP+
Sbjct: 188 RYLNLAMCNLR-EIPN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPI 474
            +P+ I   T  + L L  N++   I     K L  LE L L  N          + L  
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113

Query: 475 LREIFLQNNNLDGQIPDG 492
           L  + L +N L   IP+G
Sbjct: 114 LNTLELFDNRLT-TIPNG 130

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            E +   + L  L LG N++   I    +  L  L  LHL+NN+    +P  L  L +L+
Sbjct: 210 LEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267

Query: 477 EIFLQNNNLDGQIPDGLWKP 496
            ++L  NN+  ++    + P
Sbjct: 268 VVYLHTNNIT-KVGVNDFCP 286

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
             + ++ L   +IS    ++   L  L+ L +  N L  +IP     ++L  L + +N+ 
Sbjct: 78  QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPP-NLPSSLVELRIHDNRI 135

Query: 462 EGWIPQTLSQLPILREIFLQNNNL-DGQIPDGLWKPGLNIQ 501
                   S L  +  I +  N L +     G +  GL + 
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-GLKLN 175

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENN 459
                +DL+  +IS    +    L  L  L L  NK+  +I E     L  L+ L++  N
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKN 112

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
                IP  L     L E+ + +N +  ++P G+
Sbjct: 113 HLVE-IPPNL--PSSLVELRIHDNRI-RKVPKGV 142

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 428 LKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ-TLSQLPILREIFLQNNNLD 486
           L +LR+   KL   IP+      L  LHL++N+ +  I    L +   L  + L +N + 
Sbjct: 174 LNYLRISEAKL-TGIPK-DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR 230

Query: 487 GQIPDGLWK 495
             I +G   
Sbjct: 231 -MIENGSLS 238

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 423 GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
                L  L L  NK+   I    +   + L  L L +NQ       +LS LP LRE+ L
Sbjct: 190 DLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 481 QNNNLDGQIPDGL 493
            NN L  ++P GL
Sbjct: 249 DNNKLS-RVPAGL 260

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQT-------LS 470
             S+  L  L+ L L  NKL  ++P  +  L  L+ ++L  N     +            
Sbjct: 234 NGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGV 291

Query: 471 QLPILREIFLQNNNLD-GQIPDG 492
           +      I L NN +   ++   
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPA 314

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 9/76 (11%)

Query: 417 TLPESIGNLTALKHLRLGGNKL-------WGQIPEMKTLTALETLHLENNQFEGWI--PQ 467
            +P  + +L  L+ + L  N +       +  +           + L NN    W   P 
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 468 TLSQLPILREIFLQNN 483
           T   +     I   N 
Sbjct: 315 TFRCVTDRLAIQFGNY 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 15/120 (12%)

Query: 384 CLPWENSWTGVTCNKSKHTRV--------VSIDLKGFEISGTLPESIGNLTALKHLRLGG 435
           C   + +   V C++ +   V          +DL    I     +   +   L+ L L  
Sbjct: 9   CSAQDRA---VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 436 NKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           N +   +       L  L TL L +N+ +       + L  L ++ +  N +   + D +
Sbjct: 66  NIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDYM 123

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENN 459
             +  ++L    +S   P +  NL  L+ L L  N+L   IP      L+ L  L +  N
Sbjct: 56  PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISEN 114

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
           +    +      L  L+ + + +N+L   I   
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDL-VYISHR 146

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 424 NLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
            L +L+ L L    L   IP   +  L  L  L L +         +  +L  L+ + + 
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 482 NNNLDGQIPDGLWKPGLNIQ 501
           +      +       GLN+ 
Sbjct: 209 HWPYLDTMTPNCLY-GLNLT 227

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
             ++ +L  L+ L L  N +   I    +  L  L+ + L   Q     P     L  LR
Sbjct: 241 YLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 477 EIFLQNNNLDGQIPDGLWKPGLNIQ 501
            + +  N L   + + ++    N++
Sbjct: 300 VLNVSGNQLT-TLEESVFHSVGNLE 323

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEG 463
            +++  +    T+  +      L  L +    L   +P +  + L  L  L+L  N    
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 464 WIPQTLSQLPILREIFLQNNNL 485
                L +L  L+EI L    L
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLP 473
            +P  +   L+ L  L +  NK+   + +   + L  L++L + +N       +  S L 
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 474 ILREIFLQNNNLDGQIPDG 492
            L ++ L+  NL   IP  
Sbjct: 153 SLEQLTLEKCNLT-SIPTE 170

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            E++ +L  L  LRL    +   I +   K L  L+ L + +  +   +         L 
Sbjct: 169 TEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 477 EIFLQNNNLDGQIPDGLWKP 496
            + + + NL   +P    + 
Sbjct: 228 SLSITHCNLT-AVPYLAVRH 246

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQI-PEMKTLTALETLHLENNQFEGW 464
            + L+   I+     S   L  LK L +        + P       L +L + +      
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 465 IPQTLSQLPILREIFLQNNNLDGQIPDG 492
               +  L  LR + L  N +   I   
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIS-TIEGS 266

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEG 463
            ++L    IS      +  L  L+ ++L G +L   +     + L  L  L++  NQ   
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLTT 310

Query: 464 WIPQTLSQLPILREIFLQNNNL 485
                   +  L  + L +N L
Sbjct: 311 LEESVFHSVGNLETLILDSNPL 332

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
            +  L ++R+    +   IP+     +L  LHL+ N+       +L  L  L ++ L  N
Sbjct: 169 GMKKLSYIRIADTNI-TTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 484 NLDGQIPDGLWK 495
           ++   + +G   
Sbjct: 227 SIS-AVDNGSLA 237

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
             S+  L  L  L L  N +   +    +     L  LHL NN+    +P  L+    ++
Sbjct: 209 AASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQ 266

Query: 477 EIFLQNNNL 485
            ++L NNN+
Sbjct: 267 VVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
             + ++ L   +IS   P +   L  L+ L L  N+L  ++PE K    L+ L +  N+ 
Sbjct: 76  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPE-KMPKTLQELRVHENEI 133

Query: 462 EGWIPQTLSQLPILREIFLQNNNL-DGQIPDG 492
                   + L  +  + L  N L    I +G
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEG- 463
            + L    IS     S+ N   L+ L L  NKL  ++P  +     ++ ++L NN     
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAI 278

Query: 464 -----WIPQTLSQLPILREIFLQNNNL-DGQIPDGLWK 495
                  P   ++      + L +N +   +I    ++
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 423 GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
           G   +L  L L GNK+  ++    +K L  L  L L  N        +L+  P LRE+ L
Sbjct: 189 GLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 481 QNNNLDGQIPDGLW 494
            NN L  ++P GL 
Sbjct: 248 NNNKLV-KVPGGLA 260

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENN 459
                +DL+  +I+        NL  L  L L  NK+  +I       L  LE L+L  N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKN 110

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ 501
           Q +  +P+ +     L+E+ +  N +  ++   ++     + 
Sbjct: 111 QLKE-LPEKM--PKTLQELRVHENEI-TKVRKSVFNGLNQMI 148

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 417 TLPESIGNLTALKHLRLGGNKL-------WGQIPEMKTLTALETLHLENNQFEGWI--PQ 467
            +P  + +   ++ + L  N +       +          +   + L +N  + W   P 
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 468 TLSQLPILREIFLQNN 483
           T   + +   + L N 
Sbjct: 314 TFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPI 474
            +P+ +        L L  NK+  +I +   K L  L TL L NN+     P   + L  
Sbjct: 45  KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101

Query: 475 LREIFLQNNNLDGQIPDGL 493
           L  ++L  N L  ++P+ +
Sbjct: 102 LERLYLSKNQLK-ELPEKM 119

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478
            + N   L  + L  N+L  +I       +  LE L++ NN+    +      +P L+ +
Sbjct: 243 WLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 300

Query: 479 FLQNNNLDGQIPDGL 493
            L +N+L   +    
Sbjct: 301 DLSHNHLL-HVERNQ 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLEN 458
           +    V  +D     I+  +   +     L  L+L  N L      +     L  + L  
Sbjct: 202 AIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSY 257

Query: 459 NQFEGWIPQTLSQLPILREIFLQNNNL 485
           N+ E  +     ++  L  +++ NN L
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 13/91 (14%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 405 VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFE 462
           V ID++  ++     +    L   K +    + +  ++P   + +   +E L+L + Q E
Sbjct: 26  VHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIE 82

Query: 463 GWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
                  +    ++++++  N +   +P  +
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 112

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHL 456
               +V  ++L   +I      +      ++ L +G N +   +P    + +  L  L L
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVL 124

Query: 457 ENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           E N             P L  + + NNNL+ +I D  
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPIL 475
            L      +  LK L L  N L   +         LE L+L++N     +   LS    L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 341

Query: 476 REIFLQNNNLD 486
           + + L +N+ D
Sbjct: 342 KNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLP 473
           +LP  I  N   L  L +  N L  +I +   +  T+L+ L L +N+    +   LS +P
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIP 186

Query: 474 ILREIFLQNNNL 485
            L    +  N L
Sbjct: 187 SLFHANVSYNLL 198

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 409 LKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQT 468
           L    +S  L  ++    A++ L    N +   +        L  L L++N         
Sbjct: 188 LFHANVSYNLLSTLAIPIAVEELDASHNSI-NVVRG-PVNVELTILKLQHNNLTD--TAW 243

Query: 469 LSQLPILREIFLQNNNLDGQIPDGLWK 495
           L   P L E+ L  N L+ +I    + 
Sbjct: 244 LLNYPGLVEVDLSYNELE-KIMYHPFV 269

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
            +  + +L H  +  N     +  +    A+E L   +N           +L IL+   L
Sbjct: 181 DLSLIPSLFHANVSYN----LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---L 233

Query: 481 QNNNL 485
           Q+NNL
Sbjct: 234 QHNNL 238

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 423 GNLTALKHLRLGGNKLWGQIPEM------KTLTALETLHLENNQFEGWIPQTLSQLPILR 476
               +L+ L LG N L             + L+ L+ L+L +N      P   S L  LR
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 477 EIFLQNNNLDGQIPDGLWKPGLNI 500
            + L +N L   +        L I
Sbjct: 508 GLSLNSNRL-TVLSHNDLPANLEI 530

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLE 457
             + V  +DL    +          L  LK L L  NK+  +I +     L  L+ L+L 
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLS 322

Query: 458 NNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ 501
            N            LP +  I LQ N++   I D  +K    +Q
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQ 365

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENN 459
                + L    I      S   L  L+ L LG       I +   + L  L  L L ++
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNL-DGQIPDGLWKPGLNIQ 501
           +     P     L  L E+ L    L D  + DG ++    + 
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHL 456
                +  ++L   +I+    E+   L  L+ L L  N L G++       L  +  + L
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDL 345

Query: 457 ENNQFEGWIPQTLSQLPILREIFLQNNNL 485
           + N       QT   L  L+ + L++N L
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQL--PI 474
                NL AL  L L  N++           L +L+++   +NQ        L  L    
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 475 LREIFLQNNNLDGQIPDGL 493
           L    L  N+L  ++    
Sbjct: 176 LSFFSLAANSLYSRVSVDW 194

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENN 459
             +  ++L    +      +   L  + ++ L  N +   I +   K L  L+TL L +N
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDN 372

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNL 485
                   T+  +P + +IFL  N L
Sbjct: 373 AL-----TTIHFIPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWI-PQTLSQLPILREIFL 480
            L   + L L  N +   +       L  L+ L L +      I  +    LP LR + L
Sbjct: 22  VLNTTERLLLSFNYI-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 481 QNNNLDGQIPDGL 493
            ++ +   +    
Sbjct: 81  GSSKIY-FLHPDA 92

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 9/104 (8%)

Query: 406 SIDLKGFEISGTLPESI-GNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFE 462
            I L    +           +  L+ L L  N+      +       +LE L L  N  +
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 463 GWI-----PQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ 501
                         L  L+ ++L +N L+  +P G++     ++
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALR 507

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
           + +  + L    ++   P    +LTAL+ L L  N+L   +        LE L +  NQ 
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL-TVLSHNDLPANLEILDISRNQL 538

Query: 462 EGWIPQTLSQLPILREIFLQNNNLD 486
               P        L  + + +N   
Sbjct: 539 LAPNPDV---FVSLSVLDITHNKFI 560

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 16/96 (16%)

Query: 392 TGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLT 449
           +G+ C +                       +     L  L +   +    +    ++ L 
Sbjct: 11  SGLRCTRDGALDS--------------LHHLPGAENLTELYIENQQHLQHLELRDLRGLG 56

Query: 450 ALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
            L  L +  +      P      P L  + L  N L
Sbjct: 57  ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHL 456
               +V  ++L   +I      +      ++ L +G N +   +P    + +  L  L L
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVL 130

Query: 457 ENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           E N             P L  + + NNNL+ +I D  
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            L      +  LK L L  N L            LE L+L++N     +   LS    L+
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLK 348

Query: 477 EIFLQNNNLD 486
            + L +N+ D
Sbjct: 349 NLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 13/91 (14%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 405 VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFE 462
           V ID++  ++     +    L   K +    + +  ++P   + +   +E L+L + Q E
Sbjct: 32  VHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIE 88

Query: 463 GWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
                  +    ++++++  N +   +P  +
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 118

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLEN 458
           +    V  +D     I+  +   +     L  L+L  N L      +     L  + L  
Sbjct: 208 AIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSY 263

Query: 459 NQFEGWIPQTLSQLPILREIFLQNNNL 485
           N+ E  +     ++  L  +++ NN L
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEG 463
            +  K   +       + +   ++ L L   ++  +I          ++ L++  N    
Sbjct: 55  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRY 113

Query: 464 WIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
             P     +P+L  + L+ N+L   +P G+
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLS-SLPRGI 142

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLP 473
           +LP  I  N   L  L +  N L  +I +   +  T+L+ L L +N+    +   LS +P
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIP 192

Query: 474 ILREIFLQNNNL 485
            L    +  N L
Sbjct: 193 SLFHANVSYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.7 bits (95), Expect = 9e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
            +  + +L H  +  N     +  +    A+E L   +N           +L IL+   L
Sbjct: 187 DLSLIPSLFHANVSYN----LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---L 239

Query: 481 QNNNL 485
           Q+NNL
Sbjct: 240 QHNNL 244

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENN 459
             + S+DL   +I+      +     L+ L L  +++   I      +L +LE L L +N
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDN 84

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
                       L  L+ + L  N         L
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
            L  L+ L +  NKL   +P+      L  + +  NQ +        +L  L++I+L  N
Sbjct: 449 FLPRLQELYISRNKL-KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 484 NLD 486
             D
Sbjct: 508 PWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPI 474
            +     NLT L+ LR+G  + + +I  +    LT+L  L ++      +  Q+L  +  
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173

Query: 475 LREIFLQNNNLDGQIPDGL 493
           +  + L  +     + +  
Sbjct: 174 IHHLTLHLSES-AFLLEIF 191

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 413 EISGTLPESIGNLTALKHLRLGGNKL---WGQIPEMKTLTALETLHLENNQFEGWIPQTL 469
           E         G   +L+ L L  N L         + TL  L +L +  N F   +P + 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406

Query: 470 SQLPILREIFLQNNNLDGQIPDGL 493
                +R + L +  +   +   +
Sbjct: 407 QWPEKMRFLNLSSTGIR-VVKTCI 429

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 402 TRVVSIDLKGFEISGTLPE-SIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENN 459
           T + ++ +   E    +       LT+L  L +    L     +  K++  +  L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNL 485
           +    +      L  +R + L++ NL
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            +P+S      ++ L L    +   +        LE L + NN  +      L +   L+
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGI-RVVKT-CIPQTLEVLDVSNNNLDS-FSLFLPR---LQ 454

Query: 477 EIFLQNNNLDGQIPDG 492
           E+++  N L   +PD 
Sbjct: 455 ELYISRNKLK-TLPDA 469

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482
               ++ L +    L+  +  +   L  ++ + +EN++           L  L  + L  
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 483 NNL 485
           N +
Sbjct: 344 NLM 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           TLP+ +     +  L +  N L   +P       L TL +  NQ    +P     L  L 
Sbjct: 54  TLPDCLP--AHITTLVIPDNNL-TSLPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELS 107

Query: 477 EIFLQNNNLDGQIPDGL 493
                  +L   +P GL
Sbjct: 108 IFSNPLTHLP-ALPSGL 123

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 9e-07
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 25/94 (26%)

Query: 417 TLPESIGNLT-----------------ALKHLRLGGNKLWGQIPEMKTLTALETLHLENN 459
           +LP     L                   LK L + GN+L   +P     + L+ L +  N
Sbjct: 195 SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-TSLPV--LPSELKELMVSGN 251

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           +    +P   S    L  + +  N L  ++P+ L
Sbjct: 252 RLT-SLPMLPSG---LLSLSVYRNQLT-RLPESL 280

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 11/79 (13%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           +LP     L  L             +P +   + L  L +  NQ    +P        L+
Sbjct: 95  SLPVLPPGLLELSIFSNPLT----HLPAL--PSGLCKLWIFGNQLTS-LPVLPPG---LQ 144

Query: 477 EIFLQNNNLDGQIPDGLWK 495
           E+ + +N L   +P    +
Sbjct: 145 ELSVSDNQLA-SLPALPSE 162

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           +LP     L     L +  N+L   +P +   + L  L   NNQ    +P   S    L+
Sbjct: 135 SLPVLPPGLQ---ELSVSDNQL-ASLPAL--PSELCKLWAYNNQLTS-LPMLPSG---LQ 184

Query: 477 EIFLQNNNLDGQIPDGL 493
           E+ + +N L   +P   
Sbjct: 185 ELSVSDNQL-ASLPTLP 200

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPIL 475
           +LP     L     L +  N+L  ++P  +  L++  T++LE N       Q L ++   
Sbjct: 255 SLPMLPSGLL---SLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 476 REIFLQNNNLDGQIPDGLW 494
                     D        
Sbjct: 311 PGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWI---PQTLSQL 472
            LPES+ +L++   + L GN L  +  + ++ +T+         +F+      P+    L
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

Query: 473 PILREIFLQNNNLDGQIPDGLW 494
            +    +L         P   W
Sbjct: 335 HLAAADWLVPAREGEPAPADRW 356

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            LP+   +L   + +  G N L  ++PE++ L  L T++ +NN  +  +P        L 
Sbjct: 209 KLPDLPLSL---ESIVAGNNIL-EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LE 260

Query: 477 EIFLQNNNLDGQIPDGL 493
            + +++N L   +P+  
Sbjct: 261 ALNVRDNYLT-DLPELP 276

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            LP+   +L     +  G N+L  ++PE++ L  L  ++ +NN  +  +P        L 
Sbjct: 167 KLPDLPPSLE---FIAAGNNQL-EELPELQNLPFLTAIYADNNSLKK-LPDLPLS---LE 218

Query: 477 EIFLQNNNLDGQIPD 491
            I   NN L+ ++P+
Sbjct: 219 SIVAGNNILE-ELPE 232

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 21/91 (23%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWG----------------QIPEMKTLTALETLHLENNQ 460
            LPE   +L +L         L                  ++PE++  + L+ + ++NN 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164

Query: 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPD 491
            +  +P        L  I   NN L+ ++P+
Sbjct: 165 LKK-LPDLPPS---LEFIAAGNNQLE-ELPE 190

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            LP     L   + L    N L  ++PE      L+ LH+E N      P     +  LR
Sbjct: 331 ELPALPPRL---ERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLR-EFPDIPESVEDLR 383

Query: 477 EIFLQNNNLDGQIPDGL 493
                N++L  ++P+  
Sbjct: 384 ----MNSHL-AEVPELP 395

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            +PE   NL   K L +  N L  + P+     ++E L + + +              L 
Sbjct: 390 EVPELPQNL---KQLHVETNPL-REFPD--IPESVEDLRMNSERVVDPYEFAHETTDKLE 443

Query: 477 EIFLQNNNL 485
           +   ++++ 
Sbjct: 444 DDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 18/105 (17%), Positives = 23/105 (21%), Gaps = 18/105 (17%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTA-------------LKHLRLGGNKLWGQIPEMKTL 448
                      E     P   G                    L L    L   +PE    
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPE--LP 90

Query: 449 TALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
             LE+L    N     +P+    L  L         L   +P  L
Sbjct: 91  PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALS-DLPPLL 133

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 11/93 (11%), Positives = 23/93 (24%), Gaps = 19/93 (20%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKT--------------LTALETLHLENNQFE 462
            +P    N+ +        ++     P                        L L N    
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 463 GWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
             +P+       L  +    N+L  ++P+    
Sbjct: 85  S-LPELPPH---LESLVASCNSLT-ELPELPQS 112

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTL--------------TALETLHLENNQFE 462
            LPE   +LT L       + L    P +  L               +LE L++ NN+  
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330

Query: 463 GWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
             +P    +   L  +    N+L  ++P+    
Sbjct: 331 E-LPALPPR---LERLIASFNHL-AEVPELPQN 358

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             + NLT +  L L GN L   +  +  L +++TL L + Q     P  L+ L  L+ ++
Sbjct: 79  APLKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135

Query: 480 LQNNNL 485
           L  N +
Sbjct: 136 LDLNQI 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             +  L+ L+ L L  N++   I  +  LT L+ L + N Q     P  L+ L  L  + 
Sbjct: 123 TPLAGLSNLQVLYLDLNQI-TNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 480 LQNNNL 485
             +N +
Sbjct: 180 ADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             +  LT L++L +G  ++   +  +  L+ L TL  ++N+     P  L+ LP L E+ 
Sbjct: 145 SPLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201

Query: 480 LQNNNL 485
           L+NN +
Sbjct: 202 LKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
              + I      ++     +  +L  +  L   G  +   I  ++ L  L  L L++NQ 
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQI 75

Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
               P  L  L  + E+ L  N L
Sbjct: 76  TDLAP--LKNLTKITELELSGNPL 97

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
           E +  L  L  L L  N++   +  +K LT +  L L  N  +      ++ L  ++ + 
Sbjct: 57  EGVQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLD 113

Query: 480 LQNNNL 485
           L +  +
Sbjct: 114 LTSTQI 119

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 6e-07
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
            LPE   +L   + L +  N+L   +PE+    +LE L +  N  E   P    +     
Sbjct: 154 MLPELPTSL---EVLSVRNNQL-TFLPEL--PESLEALDVSTNLLESL-PAVPVRNHHSE 206

Query: 477 E----IFLQNNNLDGQIPDGL 493
           E       + N +   IP+ +
Sbjct: 207 ETEIFFRCRENRI-THIPENI 226

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 25/94 (26%)

Query: 417 TLPESIGNLTAL-----------------KHLRLGGNKLWGQIPEMKTLTALETLHLENN 459
           +LPE   +L  L                 KHL +  N+L   +PE      LE ++ +NN
Sbjct: 94  SLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQL-TMLPE--LPALLEYINADNN 150

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           Q    +P+  +    L  + ++NN L   +P+  
Sbjct: 151 QLTM-LPELPTS---LEVLSVRNNQL-TFLPELP 179

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 416 GTLPESIGNLTALKHLRLGGNKLWGQIPE-----MKTLTALETLHLENNQFEGWIPQTLS 470
             LPE   +L     L +  N L   +P        +           N+    IP+ + 
Sbjct: 173 TFLPELPESLE---ALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRITH-IPENIL 227

Query: 471 QLPILREIFLQNNNL 485
            L     I L++N L
Sbjct: 228 SLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 3/78 (3%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQI-PEMKTLTALETLHLENNQFEGWIPQTLSQLPIL 475
            +PE+I +L     + L  N L  +I   +   TA    H     F     Q        
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHR 278

Query: 476 REIFLQNNNLDGQIPDGL 493
                            +
Sbjct: 279 PLADAVTAWFPENKQSDV 296

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 413 EISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQL 472
           E    L E +  +     L+L    L   +P+      +  L +  N     +P+  + L
Sbjct: 48  EAVSLLKECL--INQFSELQLNRLNL-SSLPDN-LPPQITVLEITQNALIS-LPELPASL 102

Query: 473 PILREIFLQNNNLDGQIPDGL 493
             L      +N L   +P+  
Sbjct: 103 EYLD---ACDNRLS-TLPELP 119

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 424 NLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIP----QTLSQLPILRE 477
           +L AL+ L L  N +   +     + +  L+ L+L  NQ     P    +  ++LP L  
Sbjct: 110 DLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLML 167

Query: 478 IFLQNNNL 485
           + L +N L
Sbjct: 168 LDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
            +  L++L L  N L   + E     L ALE L L NN            +  L++++L 
Sbjct: 86  PVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 482 NNNLDGQIPDGL 493
            N +  + P  L
Sbjct: 145 QNQIS-RFPVEL 155

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 424 NLTALKHLRLGGNKL----WGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE-- 477
           ++  L+ L L  N++       I +   L  L  L L +N+ +      L +LP   +  
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 478 IFLQNNNLD 486
           ++L NN L+
Sbjct: 194 LYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPI 474
            +P+S+ + T    L L  N L     E     LT L +L L +N       +    +P 
Sbjct: 32  NVPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 475 LREIFLQNNNLDGQIPDG 492
           LR + L +N+L   + + 
Sbjct: 90  LRYLDLSSNHLH-TLDEF 106

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 409 LKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQT 468
              FE+  T   S   L  L  L    + +   +  ++ LT L  L   +N     +   
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSI-TDMTGIEKLTGLTKLICTSNNITT-LD-- 80

Query: 469 LSQLPILREIFLQNNNL 485
           LSQ   L  +   +N L
Sbjct: 81  LSQNTNLTYLACDSNKL 97

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 5/65 (7%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
            +     L  L    N +     ++     L  L   +N+    I   ++ L  L     
Sbjct: 186 DVSQNKLLNRLNCDTNNI--TKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240

Query: 481 QNNNL 485
             N L
Sbjct: 241 SVNPL 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
            +     L +L L   +L  ++  +   T L++L   N   +     ++ ++P L   F 
Sbjct: 313 DLSQNPKLVYLYLNNTELT-ELD-VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFE 368

Query: 481 QNNNL 485
                
Sbjct: 369 AEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
            + + T L  L      +     ++     L  L+L N +    +   +S    L+ +  
Sbjct: 292 DVTHNTQLYLLDCQAAGI--TELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSC 346

Query: 481 QNNNL 485
            N ++
Sbjct: 347 VNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
            +     L  L    NKL     ++  LT L       N     +   +S L  L  +  
Sbjct: 207 DLNQNIQLTFLDCSSNKL--TEIDVTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHC 261

Query: 481 QNNNL 485
              +L
Sbjct: 262 IQTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLEN 458
           S +T++  +D    +    L   +   T L  L    NK+  ++   +    L  L+ + 
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI-TELDVSQ-NKLLNRLNCDT 200

Query: 459 NQFEGWIPQTLSQLPILREIFLQNNNL 485
           N     +   L+Q   L  +   +N L
Sbjct: 201 NNITK-LD--LNQNIQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLEN 458
           S++T +  +     +++  L   +  LT L +L    NKL  ++   +    L  L+   
Sbjct: 82  SQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL-TKLDVSQ-NPLLTYLNCAR 136

Query: 459 NQFEGWIPQTLSQLPILREIFLQNNNL 485
           N         +S    L E+    N  
Sbjct: 137 NTLTEI---DVSHNTQLTELDCHLNKK 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 1/67 (1%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
            + + T LK L      +      +  + AL        Q      +TL+   +   +  
Sbjct: 334 DVSHNTKLKSLSCVNAHI-QDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

Query: 481 QNNNLDG 487
              +  G
Sbjct: 393 DLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
            +  LT L +     N L  ++    TL+ L TLH             L+    L     
Sbjct: 228 DVTPLTQLTYFDCSVNPL-TELDV-STLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQA 282

Query: 481 QNNNL 485
           +    
Sbjct: 283 EGCRK 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 413 EISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ-TLSQ 471
           E+S     S+      +++++    L+  +  +  ++ L  L    NQ +  +P     +
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDR 299

Query: 472 LPILREIFLQNNNLD 486
           L  L++I+L  N  D
Sbjct: 300 LTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 4/78 (5%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
               L+ L L  N +   I E    +L +LE L L  N            L  L  + L 
Sbjct: 74  RCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132

Query: 482 NNNLDGQIPDGLWKPGLN 499
            N     + +      L 
Sbjct: 133 GNPYK-TLGETSLFSHLT 149

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
           +LT L+ LR+G    + +I       LT LE L ++ +  + + P++L  +  +  + L 
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 482 NNNLDGQIPDGL 493
                  + +  
Sbjct: 207 MKQHI-LLLEIF 217

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 424 NLTALKHLRLGGNKL----WGQIPE-----MKTLTALETLHLENNQFEGWIPQTLSQLPI 474
             ++++ L L    L    + ++       +        + + +      + + L+Q+  
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISG 278

Query: 475 LREIFLQNNNLDGQIPDGL 493
           L E+    N L   +PDG+
Sbjct: 279 LLELEFSRNQLKS-VPDGI 296

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPI 474
           +LP     L AL  L +  N+L   +P    + L  L+ L+L+ N+ +   P  L+  P 
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 475 LREIFLQNNNLDGQIPDGL 493
           L ++ L NNNL  ++P GL
Sbjct: 150 LEKLSLANNNLT-ELPAGL 167

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 408 DLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ 467
            L    +      ++   T L  L L   +L  ++    TL  L TL L +NQ +  +P 
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQLQS-LPL 94

Query: 468 TLSQLPILREIFLQNNNLDGQIPDGL 493
               LP L  + +  N L   +P G 
Sbjct: 95  LGQTLPALTVLDVSFNRLT-SLPLGA 119

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLP 473
           TLP  +      L+ L L  N L  ++P   +  L  L+TL L+ N     IP+      
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSH 195

Query: 474 ILREIFLQNN 483
           +L   FL  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 423 GNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
           G L  L  L L  N+L   +P + +TL AL  L +  N+        L  L  L+E++L+
Sbjct: 74  GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 482 NNNLDGQIPDGL 493
            N L   +P GL
Sbjct: 133 GNELK-TLPPGL 143

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLP 473
           +LP      L  L+ L L GN+L   +P   +     LE L L NN         L+ L 
Sbjct: 114 SLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 474 ILREIFLQNNNLDGQIPDGLW 494
            L  + LQ N+L   IP G +
Sbjct: 173 NLDTLLLQENSLYT-IPKGFF 192

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
            S+ +L  LK L L  N +   I  +  L  LE+L+L NN+        LS+L  L  + 
Sbjct: 106 SSLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLS 162

Query: 480 LQNNNL 485
           L++N +
Sbjct: 163 LEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             + +L  L+ L LG NK+   I  +  LT L+TL LE+NQ    +P  L+ L  L+ ++
Sbjct: 128 NGLVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184

Query: 480 LQNNNL 485
           L  N++
Sbjct: 185 LSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
              +  +LK   ++     +   L ++  +    + +   +  ++ L  +  L L  N+ 
Sbjct: 24  AETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKL 80

Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
               P  L+ L  L  +FL  N +
Sbjct: 81  TDIKP--LANLKNLGWLFLDENKV 102

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
           + I  L  +  L L GNKL   I  +  L  L  L L+ N+ +      L  L  L+ + 
Sbjct: 62  QGIQYLPNVTKLFLNGNKL-TDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLS 118

Query: 480 LQNNNL 485
           L++N +
Sbjct: 119 LEHNGI 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             +  LT L++L L  N +   +  +  L  L+ L L + +         S L +   + 
Sbjct: 172 VPLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 480 LQNNNL 485
             + +L
Sbjct: 231 NTDGSL 236

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLP 473
            +   +   L +LK L L  N++   +       L+++  L L +NQ     P     L 
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 474 ILREIFLQNNNLD 486
            L  + L  N  +
Sbjct: 154 SLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 389 NSWTGVTCNKSKHTRV--------VSIDLKGFEISGTLPESI-GNLTALKHLRLGGNKLW 439
              T V C+  K  ++          + L   E +      I   L  L+ +    NK+ 
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI- 69

Query: 440 GQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
             I E   +  + +  + L +N+ E    +    L  L+ + L++N +   + + 
Sbjct: 70  TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGND 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLP 473
            LP+S+   L +L+ L L  NK+   +     + L  L  L L +N+ +     T S L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 474 ILREIFLQNNNLD 486
            ++ + L  N   
Sbjct: 153 AIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
               L+ + L  N++  ++     + L +L +L L  N+           L  L+ + L 
Sbjct: 54  PYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112

Query: 482 NNNLDGQIPDG 492
            N +   +   
Sbjct: 113 ANKI-NCLRVD 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 416 GTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPIL 475
           G L         L+ L      L   I  +  L  L+ L L +N+  G +     + P L
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGL-TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 476 REIFLQNNNLD 486
             + L  N + 
Sbjct: 91  THLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL--WGQIPEMKTLTALETLHL 456
            K  ++  ++L    +SG L         L HL L GNK+     I  +K L  L++L L
Sbjct: 61  PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 457 ENN---QFEGWIPQTLSQLPILREIFLQNNNLDG 487
            N        +       LP L         LDG
Sbjct: 121 FNCEVTNLNDYRENVFKLLPQLTY-------LDG 147

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 21/100 (21%)

Query: 268 LPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLN------------------VT 309
                Y + L F E         +VF+V VNG+T  KDL+                  + 
Sbjct: 74  KEEGEYVLVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIK 132

Query: 310 TNGVAVYGNEWPLSGQTNITMTPRNDMPVGPIISAGEIFQ 349
              ++V G     +G+ ++           P + A  I +
Sbjct: 133 KGKLSVQGEVSTFTGKLSVEFVKGYY--DNPKVCALFIMK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLP 473
           +LP  +  +LT L +L LG N+L   +P+     LT+L+ L L NNQ +        +L 
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 474 ILREIFLQNNNLDGQIPDG 492
            L+ + L NN L  ++P+G
Sbjct: 182 ELKTLKLDNNQLK-RVPEG 199

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 424 NLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
            LT+LK LRL  N+L  ++PE     LT L+TL L+NNQ +         L  L+ + LQ
Sbjct: 155 KLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 482 NNNLD 486
            N  D
Sbjct: 214 ENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLP 473
           TLP  I   L  L+ L +  NKL   +P      L  L  L L+ NQ +   P+    L 
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133

Query: 474 ILREIFLQNNNLDGQIPDG 492
            L  + L  N L   +P G
Sbjct: 134 KLTYLSLGYNELQ-SLPKG 151

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 416 GTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPIL 475
           G +         L+ L L    L   +  +  L  L+ L L  N+  G +     +LP L
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGL-ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 476 REIFLQNNNLD 486
             + L  N L 
Sbjct: 98  THLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 12/97 (12%)

Query: 397 NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL--WGQIPEMKTLTALETL 454
           N  K  ++  ++L    I G L      L  L HL L GNKL     +  +K L  L++L
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 455 HLENN---QFEGWIPQTLSQLPILREIFLQNNNLDGQ 488
            L N        +       LP L         LDG 
Sbjct: 126 DLFNCEVTNLNDYRESVFKLLPQLTY-------LDGY 155

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
            S+ +L  LK L L  N +   I  +  L  LE+L+L NN+        LS+L  L  + 
Sbjct: 103 SSLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLS 159

Query: 480 LQNNNL 485
           L++N +
Sbjct: 160 LEDNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
              +  +LK   ++     +   L ++  +    + +   +  ++ L  +  L L  N+ 
Sbjct: 21  AETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKL 77

Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
               P  L+ L  L  +FL  N +
Sbjct: 78  TDIKP--LTNLKNLGWLFLDENKI 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
           + I  L  +  L L GNKL   I  +  L  L  L L+ N+ +      L  L  L+ + 
Sbjct: 59  QGIQYLPNVTKLFLNGNKL-TDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLS 115

Query: 480 LQNNNL 485
           L++N +
Sbjct: 116 LEHNGI 121

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             +  LT L  L L  N++   I  +  LT L+ L+L  N         L+ L  L  + 
Sbjct: 147 TVLSRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLE 203

Query: 480 LQNNNL 485
           L +   
Sbjct: 204 LFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             +  LT L++L L  N +   +  +  L  L+ L L + +         S L +   + 
Sbjct: 169 VPLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 480 LQNNNLD 486
             + +L 
Sbjct: 228 NTDGSLV 234

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 8/101 (7%)

Query: 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKT-----LTALETLH 455
              +  + +          E +    AL  L L  N   G+   +          L+ L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 456 LENNQFE---GWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
           L N   E   G      +    L+ + L +N+L        
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 401 HTRVVSIDLKGFEISGTLPESIGNLT--ALKHLRLGGNKLWGQIPEMKTL-----TALET 453
            + +  + L+  E++GT P  +   T   L  L L       +   +  L       L+ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 454 LHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIP 490
           L +       +  + +   P L  + L +N   G+  
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 21/93 (22%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKT--LTALETLHLENNQFE---GWIPQT 468
            SG           L+ L L  N L            + L +L+L     +     +P  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK 275

Query: 469 L----------------SQLPILREIFLQNNNL 485
           L                 +LP +  + L+ N  
Sbjct: 276 LSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
           +S+ +L  L+ L +  NKL   I  +  L+ LE L L  N+        L++L  +  I 
Sbjct: 122 DSLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWID 178

Query: 480 LQNNNL 485
           L     
Sbjct: 179 LTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             + +LT L+ L +  N+L   +  + +   L  L L+NN+       +L  L  L  + 
Sbjct: 79  SPLKDLTKLEELSVNRNRL-KNLNGIPSAC-LSRLFLDNNELRD--TDSLIHLKNLEILS 134

Query: 480 LQNNNL 485
           ++NN L
Sbjct: 135 IRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
              V  +L    ++     S   L+ +++     + +   +  M+  T L+ LHL +NQ 
Sbjct: 19  ANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQI 75

Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
               P  L  L  L E+ +  N L
Sbjct: 76  SDLSP--LKDLTKLEELSVNRNRL 97

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQL--PILRE 477
             +   T LK L L  N++   +  +K LT LE L +  N+ +      L+ +    L  
Sbjct: 57  AGMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSR 110

Query: 478 IFLQNNNL 485
           +FL NN L
Sbjct: 111 LFLDNNEL 118

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
             +G L+ L+ L L GN++      +  L  +  + L   +           +    E++
Sbjct: 144 VMLGFLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQKC------VNEPVKYQPELY 196

Query: 480 LQNN--NLDGQI 489
           + N   + DG+ 
Sbjct: 197 ITNTVKDPDGRW 208

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKT---LTALETLHLENNQFEGWIPQTLSQLPILRE 477
           S      LKHL L  N     +P  K    ++ L+ L L     E      ++ L I + 
Sbjct: 85  SCHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 478 IFLQNNNL 485
           + +     
Sbjct: 144 LLVLGETY 151

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478
                   +L  L +  N L            ++ L L +N+ +  IP+ + +L  L+E+
Sbjct: 392 KGDCSWTKSLLSLNMSSNIL-TDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQEL 449

Query: 479 FLQNNNLDGQIPDG 492
            + +N L   +PDG
Sbjct: 450 NVASNQL-KSVPDG 462

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM----KTLTALETL 454
           SK +  + +D     ++ T+ E+ G+LT L+ L L  N+L  ++ ++      + +L+ L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQL 379

Query: 455 HLENNQFEGWIPQ-TLSQLPILREIFLQNNNLDGQIPDGL 493
            +  N       +   S    L  + + +N L   I   L
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 414 ISGTLPESIGNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQ 471
           IS      I +L+ L+ L +  N++   +     K    LE L L +N+           
Sbjct: 33  ISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVN 91

Query: 472 LPILREIFLQNNNLDGQIPDG 492
              L+ + L  N  D  +P  
Sbjct: 92  ---LKHLDLSFNAFD-ALPIC 108

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQT--LSQLP 473
            L  S+      L++L L  NKL   I        L+ L L  N F+  +P       + 
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVK-ISC-HPTVNLKHLDLSFNAFDA-LPICKEFGNMS 115

Query: 474 ILREIFLQNNNLDGQIPDGL 493
            L+ + L   +L+      +
Sbjct: 116 QLKFLGLSTTHLEKSSVLPI 135

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 397 NKSKHTRVVSIDLKGFEISGTLPESIGNLTA----LKHLRLGGNKLWGQIPEMKTLTALE 452
             +   R   +DL+G++I       I NL A       +    N++  ++     L  L+
Sbjct: 14  QYTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEI-RKLDGFPLLRRLK 67

Query: 453 TLHLENNQFEGWIPQTLSQLPILREIFLQNNNLD 486
           TL + NN+           LP L E+ L NN+L 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQT--LSQLPILREIF 479
           NL+ + H+ +   +    I     K L  L+ L + N   +   P    +    I   + 
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILE 136

Query: 480 LQNNNLDGQIPDGL 493
           + +N     IP   
Sbjct: 137 ITDNPYMTSIPVNA 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 12/107 (11%), Positives = 28/107 (26%), Gaps = 21/107 (19%)

Query: 389 NSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM--K 446
           +             R+ S+                   + + L+L    L   IP     
Sbjct: 11  HQEEDFRVTCKDIQRIPSL-----------------PPSTQTLKLIETHL-RTIPSHAFS 52

Query: 447 TLTALETLHL-ENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
            L  +  +++  +   +     +   L  +  I ++N      I   
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 12/119 (10%)

Query: 394 VTCNKSKHTRV--------VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM 445
             C +SK T +        + +     ++      +      L+ + +  N +   I   
Sbjct: 14  FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73

Query: 446 --KTLTALETLHLEN-NQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ 501
               L  L  + +E  N      P+    LP L+ + + N  +   +PD      L   
Sbjct: 74  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKV 131

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 425 LTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482
           LT LK LRL  N+L   IP      LT L+TL L  NQ +        +L  L+ I L  
Sbjct: 130 LTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188

Query: 483 NNLDGQIPDGLW 494
           N  D    + L+
Sbjct: 189 NQFDCSRCEILY 200

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 31/117 (26%), Positives = 41/117 (35%), Gaps = 18/117 (15%)

Query: 389 NSWTGVTCNKSKHTRVVS--------IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWG 440
                V C       V S        +DL+   ++     +   LT L  L L  N+L  
Sbjct: 14  EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-Q 72

Query: 441 QIPE--MKTLTALETLHLENNQ---FEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
            +       LT L TL L NNQ       +   L+QL  L    L  N L   +P G
Sbjct: 73  TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY---LGGNQLKS-LPSG 125

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQ----TL 469
           +LP  +  +LT L  L LGGN+L   +P      LT L+ L L  NQ +  IP      L
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKL 154

Query: 470 SQLPILREIFLQNNNLDGQIPDG 492
           + L  L    L  N L   +P G
Sbjct: 155 TNLQTL---SLSTNQLQS-VPHG 173

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLT-ALETLHLENNQ---FEGWIPQTLSQLPIL 475
            S+  +  L+ L LG N +  +I  +  +   LE L +  NQ     G     + +L  L
Sbjct: 64  SSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIASLSG-----IEKLVNL 117

Query: 476 REIFLQNNNLD 486
           R +++ NN + 
Sbjct: 118 RVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLE 457
            +     V +      I   +  ++  L A KHL L  N +  +I  +  +  L  L L 
Sbjct: 21  VATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLG 78

Query: 458 NNQFEGWIPQTLSQLPILREIFLQNNNL 485
            N  +  I    +    L E+++  N +
Sbjct: 79  RNLIKK-IENLDAVADTLEELWISYNQI 105

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 420 ESIGNL----TALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIP-QTLSQLPI 474
           + I NL      L+ L +  N++   +  ++ L  L  L++ NN+   W     L+ L  
Sbjct: 83  KKIENLDAVADTLEELWISYNQI-ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 475 LREIFLQNN 483
           L ++ L  N
Sbjct: 142 LEDLLLAGN 150

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 389 NSWTGVTCNKSKHTRV--------VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWG 440
                  C +    ++         ++DL    +      S  +   L+ L L   ++  
Sbjct: 7   VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-Q 65

Query: 441 QIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
            I +   ++L+ L TL L  N  +       S L  L+++     NL
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 424 NLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
           +L+ L  L L GN +   +       L++L+ L              +  L  L+E+ + 
Sbjct: 74  SLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 482 NNNL 485
           +N +
Sbjct: 133 HNLI 136

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWI-PQTLSQL 472
           +L       L++L+ L      L   +       L  L+ L++ +N  + +  P+  S L
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 473 PILREIFLQNNNL 485
             L  + L +N +
Sbjct: 149 TNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 424 NLTALKHLRLGGNKLWGQIPE--MKTLTALE----TLHLENNQFEGWIPQTLSQLPILRE 477
           NLT L+HL L  NK+   I    ++ L  +     +L L  N    +I     +   L+E
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 478 IFLQNNNLDGQIPDGL 493
           + L  N L   +PDG+
Sbjct: 205 LALDTNQL-KSVPDGI 219

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 22/124 (17%)

Query: 398 KSKHTRVVSIDLKGFEISGT----LPESIGNLTALKHLRLGGNKLWGQIPEMKTL----- 448
           ++   ++  + L+   ++G     L  ++  L  L+ L L  N L      ++ L     
Sbjct: 81  QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA--GLQLLCEGLL 138

Query: 449 ---TALETLHLENNQF--EGW--IPQTLSQLPILREIFLQNNNLDGQ----IPDGLWKPG 497
                LE L LE           +   L   P  +E+ + NN+++      +  GL    
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198

Query: 498 LNIQ 501
             ++
Sbjct: 199 CQLE 202

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 419 PESIGNLTALKHLRLGGNKLWGQIPEM--KTLTALETLHLENNQFEGWIPQTLS--QLPI 474
              I  L+ L+ LRL  N++   +          LE L + +N+      Q +S   +  
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-----QNISCCPMAS 122

Query: 475 LREIFLQNNNLDGQIPDG 492
           LR + L  N+ D  +P  
Sbjct: 123 LRHLDLSFNDFD-VLPVC 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	501
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.82
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.36
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.32
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.32
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.31
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.3
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.2
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.2
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.18
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.18
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.14
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.12
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.05
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.03
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.02
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.01
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.01
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.99
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.99
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.99
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.99
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.98
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.97
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.89
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.79
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.74
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.57
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.56
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.55
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.55
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.52
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.4
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.24
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.24
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.0
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.73
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.63
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.47
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.34
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.63
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.81
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	92.8
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.12
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.43
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	82.08

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.82  E-value=4.4e-21  Score=176.42  Aligned_cols=146  Identities=16%  Similarity=0.107  Sum_probs=102.4

Q ss_pred             EEEeeeecCCCCCCCCCCCCCCccccCCCCCC--Ccee-cccccCCCCCCCCCcHHHHhhcccCCCCcceEEecCCCCCC
Q 042915          193 SSIARSSFGDDARISFPDDLFNRKWNSFKDLN--PVEE-NKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLP  269 (501)
Q Consensus       193 ~~~~R~n~G~~~~ir~~dD~~dR~W~~~~~~~--~~~~-~~~~i~~~~~~~~~P~~V~~TA~~~~~~~~~~ltw~~~~~~  269 (501)
                      +++||+||||+. +.   |..+|+|.+|....  .... ....+.. ...+.+|..||+|||.+..    +++|.|++++
T Consensus         5 ~~~~~INcGg~~-~~---d~~gr~w~~D~~~~~~g~~~~~~~~~~~-~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~   75 (174)
T 2jwp_A            5 KVIWAVNAGGES-HV---DVHGIHYRKDPLEGRVGRASDYGMKLPI-LRSNPEDQVLYQTERYNED----SFGYDIPIKE   75 (174)
T ss_dssp             HEEEEEEETSSS-EE---ETTTEEECSSCSSTTCCCCCCCCTTSCC-SSSCHHHHHTTTCCCCCCS----CEEEEEECCS
T ss_pred             cEEEEEECCCCC-cc---CCCCCEEcCCcCcccCCcccccccceEe-cccCCCCchhhhhhccCCC----CeEEEEEeCC
Confidence            589999999963 32   67899999985421  1100 0111111 1235678999999987542    6899999998


Q ss_pred             CccEEEEEEeeecCCCCCCCceEEEEEECCcccccccccccc---cceeeeccc---------------ccCcceEEEEc
Q 042915          270 NSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTN---GVAVYGNEW---------------PLSGQTNITMT  331 (501)
Q Consensus       270 ~~~y~v~lhF~e~~~~~~~~~R~F~I~in~~~~~~~~~~~~~---~~~~~~~~~---------------~~~g~~~l~l~  331 (501)
                      +..|+|||||||+.... .++|+|||||||+++.+++|+...   +.++++++.               ..+|.++|.+.
T Consensus        76 ~G~Y~VrLhF~ei~~~~-~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~  154 (174)
T 2jwp_A           76 EGEYVLVLKFAEVYFAQ-SQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFV  154 (174)
T ss_dssp             CEEEEEEEEEECCSCCC-SSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEE
T ss_pred             CeEEEEEEEEeccccCC-CCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEe
Confidence            89999999999997553 578999999999999998987543   224433321               23456788887


Q ss_pred             cCCCCCCCcccccccceec
Q 042915          332 PRNDMPVGPIISAGEIFQL  350 (501)
Q Consensus       332 ~~~~s~lpp~ln~lei~~~  350 (501)
                      +..  .-.|+|||+||++-
T Consensus       155 p~~--~~~a~inaIEI~~~  171 (174)
T 2jwp_A          155 KGY--YDNPKVCALFIMKG  171 (174)
T ss_dssp             CSS--SCSSSEEEEEEESS
T ss_pred             ccC--CCCcEEEEEEEEeC
Confidence            642  34699999999963

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.82  E-value=1.6e-19  Score=166.06  Aligned_cols=144  Identities=14%  Similarity=0.180  Sum_probs=101.5

Q ss_pred             ceEEccCCCCCCcccceEEecCccccccCCcc----cc--cCCC--CCCCcceEEeecCCCCCceeEEeeccCCCeEEEE
Q 042915           28 DFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTT----TL--KQPG--LLPILSTLRFFTELQARKYCYVFNVTQGDKYLVR   99 (501)
Q Consensus        28 ~f~idCG~~~~~~~~~~~~~~D~~~~~~g~~~----~~--~~~~--~~~~y~t~R~F~~~~~~~~cY~~~~~~~~~ylvR   99 (501)
                      .|.||||++...+.+||+|.+|..|...|...    .+  ....  ...+|+|||+|+..    .+|.||+.++|+|+||
T Consensus         7 ~~~INcGg~~~~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~~----~tY~f~v~~~G~Y~Vr   82 (174)
T 2jwp_A            7 IWAVNAGGESHVDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNEDS----FGYDIPIKEEGEYVLV   82 (174)
T ss_dssp             EEEEEETSSSEEETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCSC----EEEEEECCSCEEEEEE
T ss_pred             EEEEECCCCCccCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCCC----eEEEEEeCCCeEEEEE
Confidence            57999999775557899999998765333211    11  1111  12389999999863    8999999988999999


Q ss_pred             EEeeccCCCCCCCCCceEEEEcCeE-EEEEEccccccCCcceEEEEEEEe-------------cCCceEEEEeecCCCCC
Q 042915          100 TTYYYGGFDGGTQPPVFDQIIGGTK-WSIVDTAEDFANGLSSYYEVVVAA-------------VGNSLSVCLARNNDTTS  165 (501)
Q Consensus       100 ~~F~~~~yd~~~~~~~F~v~~~~~~-~~~v~~~~~~~~~~~~~~E~i~~~-------------~~~~l~vcf~~~~~~~~  165 (501)
                      |||....|.... ...|||++++.. ...+++........++.||+.+.+             .+++|.|+|.|....  
T Consensus        83 LhF~ei~~~~~~-~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~--  159 (174)
T 2jwp_A           83 LKFAEVYFAQSQ-QKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD--  159 (174)
T ss_dssp             EEEECCSCCCSS-SSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC--
T ss_pred             EEEeccccCCCC-CeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC--
Confidence            999988776432 356999998743 333444222112236788887763             567899999985444  


Q ss_pred             CceeeeEEeeecC
Q 042915          166 HPFISAIELSKLD  178 (501)
Q Consensus       166 ~pFIn~iEl~~l~  178 (501)
                      .||||||||++-+
T Consensus       160 ~a~inaIEI~~~~  172 (174)
T 2jwp_A          160 NPKVCALFIMKGT  172 (174)
T ss_dssp             SSSEEEEEEESSC
T ss_pred             CcEEEEEEEEeCc
Confidence            7999999999743

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.64  E-value=3e-16  Score=157.28  Aligned_cols=139  Identities=35%  Similarity=0.622  Sum_probs=108.5

Q ss_pred             CcchhHHHHHHHHHhcCCCC--CCCCC--CCCCCCCCCcceeeecCCC-CeeEEEecCCCCcccc--cCcccccCCCCCC
Q 042915          357 TFPRDVVAMEELAKHFKNPP--IDWNG--DPCLPWENSWTGVTCNKSK-HTRVVSIDLKGFEISG--TLPESIGNLTALK  429 (501)
Q Consensus       357 t~~~d~~al~~~~~~~~~~~--~~W~~--d~C~~~~~~w~gv~c~~~~-l~~l~~L~Ls~n~l~g--~~p~~~~~L~~L~  429 (501)
                      +.++|..||+++|+.+..+.  .+|..  ++|.   +.|.||.|.... ..+|+.|+|++|++.+  .+|..+.++++|+
T Consensus         3 c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~   79 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence            67789999999999986532  37863  4552   359999997432 2589999999999998  8888888899999


Q ss_pred             eeecCC-CcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915          430 HLRLGG-NKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       430 ~L~Ls~-N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      +|+|++ |.+.+.+| .++++++|++|+|++|++++.+|..++.+++|++|+|++|.+++.+|..+. +++|
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence            999984 88887777 478888888888888888777787787788888888888887777777665 5544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=3.7e-15  Score=168.50  Aligned_cols=139  Identities=27%  Similarity=0.443  Sum_probs=116.2

Q ss_pred             CcchhHHHHHHHHHhcCCCCCCCCCCC----CCCCCCCc------------ceeeecCCCCeeEEEecCCCCcccccCcc
Q 042915          357 TFPRDVVAMEELAKHFKNPPIDWNGDP----CLPWENSW------------TGVTCNKSKHTRVVSIDLKGFEISGTLPE  420 (501)
Q Consensus       357 t~~~d~~al~~~~~~~~~~~~~W~~d~----C~~~~~~w------------~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~  420 (501)
                      +...|+.||++||+.+..+  +|+.+.    +.|..|.|            .||.|+.  ..+|+.|+|++|+|.|.+|+
T Consensus       266 ~~~~d~~ALl~~k~~l~~~--~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~--~~~V~~L~Ls~~~L~G~ip~  341 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK--NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN--NGRVTGLSLAGFGAKGRVPD  341 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG--GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT--TSCEEEEECTTTCCEEEECG
T ss_pred             cchHHHHHHHHHHHHcCCC--CCCcCCCcccccCCccccccccccccccCcCceEecC--CCCEEEEECccCCCCCcCch
Confidence            4467999999999998654  786432    22334789            9999975  36899999999999999999


Q ss_pred             cccCCCCCCeeec-CCCcCCCC----------------------------------------------------------
Q 042915          421 SIGNLTALKHLRL-GGNKLWGQ----------------------------------------------------------  441 (501)
Q Consensus       421 ~~~~L~~L~~L~L-s~N~l~~~----------------------------------------------------------  441 (501)
                      .+++|++|+.|+| ++|.+.|.                                                          
T Consensus       342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~  421 (876)
T 4ecn_A          342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS  421 (876)
T ss_dssp             GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred             HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence            9999999999999 77755443                                                          


Q ss_pred             ------------------Cc-CCCCCCCCCEEEccCCcCCc-----------------cCccccC--CCCCCCEEEccCC
Q 042915          442 ------------------IP-EMKTLTALETLHLENNQFEG-----------------WIPQTLS--QLPILREIFLQNN  483 (501)
Q Consensus       442 ------------------~p-~~~~l~~L~~L~Ls~N~l~g-----------------~~P~~~~--~l~~L~~L~Ls~N  483 (501)
                                        +| .+++|++|+.|+|++|+++|                 .+|..++  ++++|+.|+|++|
T Consensus       422 ~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N  501 (876)
T 4ecn_A          422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC  501 (876)
T ss_dssp             CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred             ccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence                              45 57889999999999999998                 4999988  9999999999999


Q ss_pred             cCcccCCccCC-CCCCc
Q 042915          484 NLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       484 ~l~g~lP~~~~-~~~L~  499 (501)
                      ++.|.+|..+. +++|+
T Consensus       502 ~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          502 PNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             TTCCSCCGGGGGCSSCC
T ss_pred             CCCccChHHHhCCCCCC
Confidence            99999998887 66654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.54  E-value=9.6e-15  Score=160.39  Aligned_cols=137  Identities=27%  Similarity=0.416  Sum_probs=114.4

Q ss_pred             cchhHHHHHHHHHhcCCCCC-----------CCCCCCCCCCCCCc---ceeeecCCCCeeEEEecCCCCcccccCccccc
Q 042915          358 FPRDVVAMEELAKHFKNPPI-----------DWNGDPCLPWENSW---TGVTCNKSKHTRVVSIDLKGFEISGTLPESIG  423 (501)
Q Consensus       358 ~~~d~~al~~~~~~~~~~~~-----------~W~~d~C~~~~~~w---~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~  423 (501)
                      ...|+.||.+++..+..+.|           +|+.+.   ..|.|   .||.|+..  .+|+.|+|++|++.|.+|+.++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~---~~c~w~~~~GV~C~~~--~~V~~L~L~~~~l~g~lp~~l~  102 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNK---ELDMWGAQPGVSLNSN--GRVTGLSLEGFGASGRVPDAIG  102 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSS---CGGGTTCCTTEEECTT--CCEEEEECTTSCCEEEECGGGG
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCC---CcccccCCCCeEEcCC--CCEEEEEecCcccCCcCChHHh
Confidence            45799999999998876543           354221   12579   99999754  6999999999999999999999


Q ss_pred             CCCCCCeeecCCCc------------------------------------------------------------------
Q 042915          424 NLTALKHLRLGGNK------------------------------------------------------------------  437 (501)
Q Consensus       424 ~L~~L~~L~Ls~N~------------------------------------------------------------------  437 (501)
                      +|++|+.|+|++|.                                                                  
T Consensus       103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  182 (636)
T 4eco_A          103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT  182 (636)
T ss_dssp             GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred             cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence            99999999999984                                                                  


Q ss_pred             ------------CCCCCcCCCCCCCCCEEEccCCcCCcc-----------------CccccC--CCCCCCEEEccCCcCc
Q 042915          438 ------------LWGQIPEMKTLTALETLHLENNQFEGW-----------------IPQTLS--QLPILREIFLQNNNLD  486 (501)
Q Consensus       438 ------------l~~~~p~~~~l~~L~~L~Ls~N~l~g~-----------------~P~~~~--~l~~L~~L~Ls~N~l~  486 (501)
                                  ++|+++.++++++|+.|+|++|+++|.                 +|..++  ++++|++|+|++|++.
T Consensus       183 l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~  262 (636)
T 4eco_A          183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL  262 (636)
T ss_dssp             CCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred             hhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence                        345333588999999999999999986                 999999  9999999999999999


Q ss_pred             ccCCccCC-CCCCc
Q 042915          487 GQIPDGLW-KPGLN  499 (501)
Q Consensus       487 g~lP~~~~-~~~L~  499 (501)
                      |.+|..++ +++|+
T Consensus       263 ~~~p~~l~~l~~L~  276 (636)
T 4eco_A          263 TKLPTFLKALPEMQ  276 (636)
T ss_dssp             SSCCTTTTTCSSCC
T ss_pred             ccChHHHhcCCCCC
Confidence            99999888 66654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.43  E-value=3.7e-13  Score=128.53  Aligned_cols=109  Identities=29%  Similarity=0.373  Sum_probs=87.3

Q ss_pred             CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC
Q 042915          389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN  459 (501)
Q Consensus       389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N  459 (501)
                      |.|++|.|....        .++|+.|+|++|+|++..|..|.++++|+.|+|++|+++..++. +..+++|+.|+|++|
T Consensus        19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            479999997543        24678899999999988888888999999999999998776664 688888888888888


Q ss_pred             cCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915          460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      ++++..+..|..+++|+.|+|++|+|+ .+|..+. +++|
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  137 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL  137 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC
Confidence            888666666788888888888888888 7887665 4444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=5.3e-13  Score=123.91  Aligned_cols=111  Identities=21%  Similarity=0.272  Sum_probs=91.4

Q ss_pred             CCcceeeecCCCC--------eeEEEecCCCCcccccCcc-cccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccC
Q 042915          389 NSWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPE-SIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLEN  458 (501)
Q Consensus       389 ~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~-~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~  458 (501)
                      |.|+.+.|....+        .+++.|+|++|+|++..+. .+..+++|++|+|++|++++..| .+.++++|+.|+|++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            5688888865432        2678899999999876664 48899999999999999998877 488999999999999


Q ss_pred             CcCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCCc
Q 042915          459 NQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       459 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                      |++++..|..|..+++|+.|+|++|+|++.+|..+. +++|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            999988888899999999999999999977787776 55553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.38  E-value=4.8e-13  Score=149.94  Aligned_cols=129  Identities=23%  Similarity=0.355  Sum_probs=76.0

Q ss_pred             cCcchhHHHHHHHHHhcCCCC--CCCC-CCCCCCCCCCcceeeecCCCCeeEEEecCCCCccccc---CcccccCCCCCC
Q 042915          356 TTFPRDVVAMEELAKHFKNPP--IDWN-GDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGT---LPESIGNLTALK  429 (501)
Q Consensus       356 ~t~~~d~~al~~~~~~~~~~~--~~W~-~d~C~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~---~p~~~~~L~~L~  429 (501)
                      ...++|.+||+++|+.+.++.  .+|+ +..|    |.|.||.|+   ..+|+.|+|+++.+.|.   +|+.+.+|+.|+
T Consensus         8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~----C~w~gv~C~---~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNP----CTFDGVTCR---DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG----GGSTTEEEE---TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred             cCCHHHHHHHHHHHhhCCCcccccCCCCCCCC----cCCcceEEC---CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence            345789999999999886432  3796 3344    489999998   26999999999999987   665444444444


Q ss_pred             eeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCcc--ccCCCCCCCEEEccCCcCcccCCc
Q 042915          430 HLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ--TLSQLPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       430 ~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~--~~~~l~~L~~L~Ls~N~l~g~lP~  491 (501)
                      .++++.|.+...++.++.+++|++|+|++|.+.|.+|.  .++.+++|++|+|++|.+.+.+|.
T Consensus        81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  144 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV  144 (768)
T ss_dssp             EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred             ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH
Confidence            44444444332222344444444444444444444444  444444444444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.37  E-value=7.4e-14  Score=140.82  Aligned_cols=136  Identities=20%  Similarity=0.356  Sum_probs=95.4

Q ss_pred             cCcchhHHHHHHHHHhcCCCCC----CCC-CCCCCCCCCCcceeeecC-------CCCeeEEEecCCCCcccccCccccc
Q 042915          356 TTFPRDVVAMEELAKHFKNPPI----DWN-GDPCLPWENSWTGVTCNK-------SKHTRVVSIDLKGFEISGTLPESIG  423 (501)
Q Consensus       356 ~t~~~d~~al~~~~~~~~~~~~----~W~-~d~C~~~~~~w~gv~c~~-------~~l~~l~~L~Ls~n~l~g~~p~~~~  423 (501)
                      .....|..||+++|..+.....    .|. ...|.+..|.|.|+.|..       ....+++.|+|++|+++ .+|..+.
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~  101 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF  101 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence            4457889999999987743333    452 112223346899999852       23456778888888877 6677777


Q ss_pred             CCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccC
Q 042915          424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL  493 (501)
Q Consensus       424 ~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~  493 (501)
                      ++++|++|+|++|.++..+..++.+++|+.|+|++|+++ .+|..++.+++|++|+|++|++.+.+|..+
T Consensus       102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred             hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence            788888888888887733335777778888888888777 677777777777777777777777777655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.36  E-value=2.4e-12  Score=117.49  Aligned_cols=109  Identities=25%  Similarity=0.363  Sum_probs=92.9

Q ss_pred             CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC
Q 042915          389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN  459 (501)
Q Consensus       389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N  459 (501)
                      |.|.++.|...+        .++|+.|+|++|++++..+..+..+++|++|+|++|++++.++. +..+++|+.|+|++|
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            679999987543        34789999999999977777789999999999999999988775 699999999999999


Q ss_pred             cCCccCccccCCCCCCCEEEccCCcCcccCCccC-C-CCCC
Q 042915          460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL-W-KPGL  498 (501)
Q Consensus       460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~-~-~~~L  498 (501)
                      ++++..+..+..+++|+.|+|++|+|+ .+|... . +++|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L  126 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSL  126 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCccc
Confidence            999777777899999999999999999 677664 3 4544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=2.9e-12  Score=119.12  Aligned_cols=108  Identities=25%  Similarity=0.370  Sum_probs=92.8

Q ss_pred             CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC
Q 042915          389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN  459 (501)
Q Consensus       389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N  459 (501)
                      |.|..+.|....        ..+++.|+|++|+|+ .+|..|.++++|+.|+|++|++++..+. |.++++|+.|+|++|
T Consensus        10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            567778886433        236899999999998 7788999999999999999999988874 899999999999999


Q ss_pred             cCCccCccccCCCCCCCEEEccCCcCcccCCcc-CC-CCCC
Q 042915          460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG-LW-KPGL  498 (501)
Q Consensus       460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~-~~-~~~L  498 (501)
                      ++++..|..|..+++|+.|+|++|+|+ .+|.. +. +++|
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L  128 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSAL  128 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccc
Confidence            999888889999999999999999999 67765 44 5544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=2.2e-12  Score=117.43  Aligned_cols=100  Identities=29%  Similarity=0.305  Sum_probs=88.4

Q ss_pred             CCcceeeecCCCC--------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC
Q 042915          389 NSWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN  459 (501)
Q Consensus       389 ~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N  459 (501)
                      |.|+.+.|....+        .+++.|+|++|+|++..|..|.++++|++|+|++|+|++.++. |..+++|+.|+|++|
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            5688888865432        4688999999999998899999999999999999999988886 699999999999999


Q ss_pred             cCCccCccccCCCCCCCEEEccCCcCccc
Q 042915          460 QFEGWIPQTLSQLPILREIFLQNNNLDGQ  488 (501)
Q Consensus       460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~  488 (501)
                      +|++..+..|..+++|+.|+|++|++.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            99977777899999999999999999843

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.33  E-value=1.1e-12  Score=147.10  Aligned_cols=95  Identities=39%  Similarity=0.615  Sum_probs=90.6

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ...+.+|+.|+|++|+++|.+|..+++|++|+.|+|++|+++|.+| .++++++|+.|||++|+++|.+|..++.+++|+
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            4457789999999999999999999999999999999999999999 589999999999999999999999999999999


Q ss_pred             EEEccCCcCcccCCcc
Q 042915          477 EIFLQNNNLDGQIPDG  492 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~~  492 (501)
                      +|+|++|+|+|.||..
T Consensus       708 ~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          708 EIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             EEECCSSEEEEECCSS
T ss_pred             EEECcCCcccccCCCc
Confidence            9999999999999975

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.32  E-value=3.7e-12  Score=120.86  Aligned_cols=93  Identities=18%  Similarity=0.231  Sum_probs=46.0

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      ++|+.|+|++|+|++..+..|.++++|+.|+|++|++++.++. +..+++|+.|+|++|++++..|..|..+++|+.|+|
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence            3445555555555544444455555555555555555544443 445555555555555555444445555555555555


Q ss_pred             cCCcCcccCCccCC
Q 042915          481 QNNNLDGQIPDGLW  494 (501)
Q Consensus       481 s~N~l~g~lP~~~~  494 (501)
                      ++|+|++..|..+.
T Consensus       137 ~~N~l~~~~~~~~~  150 (220)
T 2v70_A          137 YDNQITTVAPGAFD  150 (220)
T ss_dssp             TTSCCCCBCTTTTT
T ss_pred             CCCcCCEECHHHhc
Confidence            55555533343433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.32  E-value=4.4e-12  Score=120.33  Aligned_cols=86  Identities=27%  Similarity=0.319  Sum_probs=54.8

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      +++|+.|+|++|+|++..|..|.++++|++|+|++|+|+..++. |.++++|+.|+|++|++++..|..|..+++|+.|+
T Consensus        55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  134 (220)
T 2v9t_B           55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS  134 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence            44556666666666655566666666666666666666655443 46666666666666666666666666666677777


Q ss_pred             ccCCcCc
Q 042915          480 LQNNNLD  486 (501)
Q Consensus       480 Ls~N~l~  486 (501)
                      |++|+|+
T Consensus       135 L~~N~l~  141 (220)
T 2v9t_B          135 LYDNKLQ  141 (220)
T ss_dssp             CCSSCCS
T ss_pred             CCCCcCC
Confidence            7777766

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.31  E-value=7.7e-12  Score=118.65  Aligned_cols=89  Identities=22%  Similarity=0.217  Sum_probs=60.0

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ...+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++..|. +..+++|+.|+|++|++++..+..+..+++|+
T Consensus        76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  155 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ  155 (220)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence            34556677777777777755555566677777777777777766553 66677777777777777765555666777777


Q ss_pred             EEEccCCcCc
Q 042915          477 EIFLQNNNLD  486 (501)
Q Consensus       477 ~L~Ls~N~l~  486 (501)
                      .|+|++|++.
T Consensus       156 ~L~L~~N~~~  165 (220)
T 2v9t_B          156 TMHLAQNPFI  165 (220)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEeCCCCcC
Confidence            7777777664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.31  E-value=6.7e-12  Score=117.48  Aligned_cols=102  Identities=30%  Similarity=0.415  Sum_probs=64.9

Q ss_pred             CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC
Q 042915          389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN  459 (501)
Q Consensus       389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N  459 (501)
                      |.|.++.|....        ..+++.|+|++|++++..+..+.++++|++|+|++|++++.++. +..+++|++|+|++|
T Consensus         7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            567777775432        23567777777777755555566777777777777777655553 466666777777666


Q ss_pred             cCCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915          460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~  491 (501)
                      ++++..+..+..+++|++|+|++|+|+ .+|.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~  117 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPD  117 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCc-ccCH
Confidence            666544445566666666666666666 3443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.30  E-value=3e-12  Score=118.83  Aligned_cols=92  Identities=24%  Similarity=0.384  Sum_probs=85.8

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++.++. +.++++|+.|+|++|++++..|..+..+++|+.
T Consensus        51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            3567899999999999999999999999999999999999999886 899999999999999999999999999999999


Q ss_pred             EEccCCcCcccCC
Q 042915          478 IFLQNNNLDGQIP  490 (501)
Q Consensus       478 L~Ls~N~l~g~lP  490 (501)
                      |+|++|++.+..+
T Consensus       131 L~L~~N~l~c~c~  143 (192)
T 1w8a_A          131 LNLASNPFNCNCH  143 (192)
T ss_dssp             EECTTCCBCCSGG
T ss_pred             EEeCCCCccCcCc
Confidence            9999999986654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.28  E-value=9.5e-12  Score=118.02  Aligned_cols=111  Identities=16%  Similarity=0.225  Sum_probs=95.1

Q ss_pred             CCcceeeecCCCC--------eeEEEecCCCCcccccCc-ccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccC
Q 042915          389 NSWTGVTCNKSKH--------TRVVSIDLKGFEISGTLP-ESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLEN  458 (501)
Q Consensus       389 ~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p-~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~  458 (501)
                      |.|..+.|....+        ..++.|+|++|+|++..+ ..|..+++|+.|+|++|++++..+ .|.++++|+.|+|++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            5788888875433        246799999999998755 458999999999999999999888 589999999999999


Q ss_pred             CcCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCCc
Q 042915          459 NQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       459 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                      |++++..|..|..+++|+.|+|++|+|++..|..+. +++|+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  132 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR  132 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence            999988888899999999999999999976677776 55553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.27  E-value=1.1e-11  Score=113.37  Aligned_cols=101  Identities=26%  Similarity=0.295  Sum_probs=86.0

Q ss_pred             CcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCc
Q 042915          390 SWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQ  460 (501)
Q Consensus       390 ~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~  460 (501)
                      ....+.|....        ..+|+.|+|++|+|++..|..|.++++|+.|+|++|+|++.++. |..+++|+.|+|++|+
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            44556665432        24688999999999998899999999999999999999988776 6899999999999999


Q ss_pred             CCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915          461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       461 l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~  491 (501)
                      |++..+..|..+++|+.|+|++|++. ..|.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~  122 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD-CECR  122 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence            99666666999999999999999998 4554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.24  E-value=2e-12  Score=129.23  Aligned_cols=96  Identities=28%  Similarity=0.469  Sum_probs=78.8

Q ss_pred             CCCeeEEEecCCC-CcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          399 SKHTRVVSIDLKG-FEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       399 ~~l~~l~~L~Ls~-n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ..+++|+.|+|++ |.+.+.+|..+.++++|++|+|++|++++.+| .+.++++|++|+|++|.+++.+|..++.+++|+
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  152 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence            3456788888884 88888888888888888888888888887777 478888888888888888888888888888888


Q ss_pred             EEEccCCcCcccCCccCC
Q 042915          477 EIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~~~~  494 (501)
                      +|+|++|+++|.+|..++
T Consensus       153 ~L~L~~N~l~~~~p~~l~  170 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSYG  170 (313)
T ss_dssp             EEECCSSCCEEECCGGGG
T ss_pred             eEECcCCcccCcCCHHHh
Confidence            888888888888887776

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.23  E-value=9.9e-12  Score=125.15  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=90.9

Q ss_pred             cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCC
Q 042915          397 NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPIL  475 (501)
Q Consensus       397 ~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L  475 (501)
                      ....+++|+.|+|++|++++ +|+.+..+++|+.|+|++|++.+.+|. ++.+++|+.|+|++|++.+.+|..++.+++|
T Consensus       201 ~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L  279 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL  279 (328)
T ss_dssp             GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred             hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence            34456789999999999995 666799999999999999999998884 8999999999999999999999999999999


Q ss_pred             CEEEccCCcCcccCCccCC-CCCCc
Q 042915          476 REIFLQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       476 ~~L~Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                      +.|+|++|++.|.+|+.++ +++++
T Consensus       280 ~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          280 EKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             CEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             CEEeCCCCCchhhccHHHhhccCce
Confidence            9999999999999999988 66654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.20  E-value=5.9e-11  Score=114.47  Aligned_cols=87  Identities=30%  Similarity=0.352  Sum_probs=44.7

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      .+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++.++ .+..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus       105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            34455555555555554444444555555555555555554444 24555555555555555554444445555555555


Q ss_pred             EccCCcCc
Q 042915          479 FLQNNNLD  486 (501)
Q Consensus       479 ~Ls~N~l~  486 (501)
                      +|++|++.
T Consensus       185 ~l~~N~~~  192 (251)
T 3m19_A          185 TLFGNQFD  192 (251)
T ss_dssp             ECCSCCBC
T ss_pred             EeeCCcee
Confidence            55555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.20  E-value=4.8e-11  Score=113.80  Aligned_cols=84  Identities=23%  Similarity=0.288  Sum_probs=43.4

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      ++|+.|+|++|+|.+..+..|..+++|+.|+|++|+|++.++. +..+++|+.|+|++|+++ .+|..+..+++|+.|+|
T Consensus        64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  142 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL  142 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred             cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence            4455555555555433334445555555555555555544443 345555555555555555 44555555555555555


Q ss_pred             cCCcCc
Q 042915          481 QNNNLD  486 (501)
Q Consensus       481 s~N~l~  486 (501)
                      ++|+|+
T Consensus       143 ~~N~l~  148 (229)
T 3e6j_A          143 DQNQLK  148 (229)
T ss_dssp             CSSCCC
T ss_pred             CCCcCC
Confidence            555555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.19  E-value=6.2e-11  Score=117.25  Aligned_cols=104  Identities=25%  Similarity=0.308  Sum_probs=86.7

Q ss_pred             eeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCC
Q 042915          394 VTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQL  472 (501)
Q Consensus       394 v~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l  472 (501)
                      ++.....+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++.++. +..+++|+.|+|++|++++..+..+..+
T Consensus        92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  171 (290)
T 1p9a_G           92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (290)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence            333345567889999999999987778899999999999999999987775 6889999999999999996555667889


Q ss_pred             CCCCEEEccCCcCcccCCccCC-CCCC
Q 042915          473 PILREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       473 ~~L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      ++|+.|+|++|+|+ .+|..++ ...|
T Consensus       172 ~~L~~L~L~~N~l~-~ip~~~~~~~~L  197 (290)
T 1p9a_G          172 ENLDTLLLQENSLY-TIPKGFFGSHLL  197 (290)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             CCCCEEECCCCcCC-ccChhhcccccC
Confidence            99999999999999 7998877 4443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.19  E-value=6.9e-11  Score=113.99  Aligned_cols=100  Identities=25%  Similarity=0.327  Sum_probs=86.5

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ...+++|+.|+|++|++++..+..|..+++|++|+|++|++++.++. +..+++|+.|+|++|++++..+..++.+++|+
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence            35678999999999999988888899999999999999999988775 68999999999999999977777899999999


Q ss_pred             EEEccCCcCcccCCc-cCC-CCCC
Q 042915          477 EIFLQNNNLDGQIPD-GLW-KPGL  498 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~-~~~-~~~L  498 (501)
                      .|+|++|+|++ +|. .+. +++|
T Consensus       159 ~L~L~~N~l~~-~~~~~~~~l~~L  181 (251)
T 3m19_A          159 TLSLSTNQLQS-VPHGAFDRLGKL  181 (251)
T ss_dssp             EEECCSSCCSC-CCTTTTTTCTTC
T ss_pred             EEECCCCcCCc-cCHHHHhCCCCC
Confidence            99999999994 554 454 5554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.18  E-value=7.8e-11  Score=115.13  Aligned_cols=91  Identities=26%  Similarity=0.311  Sum_probs=51.7

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      .+++|+.|+|++|++++..+..+..+++|+.|++++|++++.++. +..+++|+.|+|++|++++..|..++.+++|+.|
T Consensus       131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  210 (272)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence            345555666666665554444455566666666666666555443 4555666666666666655555555555666666


Q ss_pred             EccCCcCcccCC
Q 042915          479 FLQNNNLDGQIP  490 (501)
Q Consensus       479 ~Ls~N~l~g~lP  490 (501)
                      +|++|++.+..|
T Consensus       211 ~l~~N~~~~~~~  222 (272)
T 3rfs_A          211 WLHDNPWDCTCP  222 (272)
T ss_dssp             ECCSSCBCCCTT
T ss_pred             EccCCCccccCc
Confidence            666666555444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.18  E-value=2.1e-11  Score=127.49  Aligned_cols=109  Identities=27%  Similarity=0.279  Sum_probs=70.8

Q ss_pred             CCCCCCCCCcce--eeecCCCC-------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc--CCCCCCC
Q 042915          382 DPCLPWENSWTG--VTCNKSKH-------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTA  450 (501)
Q Consensus       382 d~C~~~~~~w~g--v~c~~~~l-------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~l~~  450 (501)
                      +||. ..|.|.+  +.|...++       ++|+.|+|++|.+++..|..|.++++|++|+|++|.+.+.++  .+.++++
T Consensus         2 ~p~~-~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~   80 (455)
T 3v47_A            2 DPGT-SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS   80 (455)
T ss_dssp             ------CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTT
T ss_pred             CCcc-ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccccc
Confidence            4452 3344444  66654332       357778888888877777777777777777777777765543  3677777


Q ss_pred             CCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915          451 LETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       451 L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~  491 (501)
                      |++|+|++|++.+..|..++++++|++|+|++|++++.+|.
T Consensus        81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  121 (455)
T 3v47_A           81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS  121 (455)
T ss_dssp             CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH
T ss_pred             CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC
Confidence            77777777777766677777777777777777777654444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.18  E-value=8.8e-11  Score=109.76  Aligned_cols=92  Identities=27%  Similarity=0.331  Sum_probs=66.4

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ..+++|+.|+|++|++++..+..+.++++|++|+|++|++++.++. +..+++|+.|+|++|++++..+..+..+++|+.
T Consensus        73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  152 (208)
T 2o6s_A           73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  152 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence            4556777777777777766556667777777777777777766664 577777777777777777555555777777777


Q ss_pred             EEccCCcCcccCC
Q 042915          478 IFLQNNNLDGQIP  490 (501)
Q Consensus       478 L~Ls~N~l~g~lP  490 (501)
                      |+|++|++.+..|
T Consensus       153 L~l~~N~~~~~~~  165 (208)
T 2o6s_A          153 IWLHDNPWDCTCP  165 (208)
T ss_dssp             EECCSCCBCCCTT
T ss_pred             EEecCCCeecCCC
Confidence            7777777776555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.18  E-value=3.8e-11  Score=130.10  Aligned_cols=95  Identities=19%  Similarity=0.161  Sum_probs=77.1

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      .++.|+|++|+|++..+..|.+|++|++|+|++|+|+++.+. |.+|++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            678899999999877778888899999999999998887774 7888889999999988886666778888888888888


Q ss_pred             CCcCcccCCc-cCC-CCCC
Q 042915          482 NNNLDGQIPD-GLW-KPGL  498 (501)
Q Consensus       482 ~N~l~g~lP~-~~~-~~~L  498 (501)
                      +|+|+ .+|. .|. +++|
T Consensus       133 ~N~l~-~l~~~~~~~L~~L  150 (635)
T 4g8a_A          133 ETNLA-SLENFPIGHLKTL  150 (635)
T ss_dssp             TSCCC-CSTTCCCTTCTTC
T ss_pred             CCcCC-CCChhhhhcCccc
Confidence            88888 4554 354 5544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.17  E-value=2.4e-11  Score=107.41  Aligned_cols=104  Identities=18%  Similarity=0.258  Sum_probs=84.6

Q ss_pred             eeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCcc-CccccC
Q 042915          393 GVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGW-IPQTLS  470 (501)
Q Consensus       393 gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~-~P~~~~  470 (501)
                      .++.....+++|+.|++++|.+++.  ..+..+++|++|+|++|++++.+|. +..+++|+.|+|++|++++. .|..++
T Consensus        33 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~  110 (149)
T 2je0_A           33 KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK  110 (149)
T ss_dssp             BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred             HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHh
Confidence            4444446678999999999999866  7789999999999999999987775 56799999999999999863 447899


Q ss_pred             CCCCCCEEEccCCcCcccCCc----cCC-CCCCc
Q 042915          471 QLPILREIFLQNNNLDGQIPD----GLW-KPGLN  499 (501)
Q Consensus       471 ~l~~L~~L~Ls~N~l~g~lP~----~~~-~~~L~  499 (501)
                      .+++|++|++++|+++ .+|.    .+. +++|+
T Consensus       111 ~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A          111 KLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             GCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCC
T ss_pred             hCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcc
Confidence            9999999999999999 4554    344 55543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.15  E-value=5.9e-11  Score=110.25  Aligned_cols=89  Identities=27%  Similarity=0.266  Sum_probs=81.1

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ...+.+|+.|+|++|.|++..+..|.+|++|+.|+|++|+|++..+. |..+++|+.|+|++|++++..+..|..+++|+
T Consensus        50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (193)
T 2wfh_A           50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS  129 (193)
T ss_dssp             GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence            34567899999999999988888999999999999999999998884 89999999999999999966666799999999


Q ss_pred             EEEccCCcCc
Q 042915          477 EIFLQNNNLD  486 (501)
Q Consensus       477 ~L~Ls~N~l~  486 (501)
                      .|+|++|++.
T Consensus       130 ~L~L~~N~~~  139 (193)
T 2wfh_A          130 HLAIGANPLY  139 (193)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEeCCCCee
Confidence            9999999985

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.14  E-value=7.2e-11  Score=107.54  Aligned_cols=92  Identities=28%  Similarity=0.336  Sum_probs=81.7

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ..+++|+.|+|++|+|++..+..+..+++|+.|+|++|++++.++. +..+++|+.|+|++|++++..+..+..+++|+.
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  128 (177)
T 2o6r_A           49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK  128 (177)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence            3567899999999999977777789999999999999999988875 689999999999999999666666789999999


Q ss_pred             EEccCCcCcccCC
Q 042915          478 IFLQNNNLDGQIP  490 (501)
Q Consensus       478 L~Ls~N~l~g~lP  490 (501)
                      |+|++|++.+..|
T Consensus       129 L~l~~N~~~~~~~  141 (177)
T 2o6r_A          129 IWLHTNPWDCSCP  141 (177)
T ss_dssp             EECCSSCBCCCHH
T ss_pred             EEecCCCeeccCc
Confidence            9999999987554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.14  E-value=3.7e-11  Score=108.47  Aligned_cols=104  Identities=20%  Similarity=0.313  Sum_probs=84.4

Q ss_pred             eeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccC-ccccC
Q 042915          393 GVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWI-PQTLS  470 (501)
Q Consensus       393 gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~-P~~~~  470 (501)
                      .++.....+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++.+|. +..+++|+.|+|++|++++.. +..+.
T Consensus        40 ~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~  117 (168)
T 2ell_A           40 KIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK  117 (168)
T ss_dssp             BCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred             hHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence            3443345678999999999999865  7789999999999999999987775 467999999999999998532 27899


Q ss_pred             CCCCCCEEEccCCcCcccCCc----cCC-CCCCc
Q 042915          471 QLPILREIFLQNNNLDGQIPD----GLW-KPGLN  499 (501)
Q Consensus       471 ~l~~L~~L~Ls~N~l~g~lP~----~~~-~~~L~  499 (501)
                      .+++|+.|+|++|+++ .+|.    .+. +++|+
T Consensus       118 ~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A          118 KLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             SCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCC
T ss_pred             cCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCc
Confidence            9999999999999999 5665    454 55543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.14  E-value=1.3e-10  Score=105.60  Aligned_cols=93  Identities=28%  Similarity=0.387  Sum_probs=79.3

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      ..+.|++++|+|+ .+|..+.  ++|+.|+|++|+|++..|. |.++++|+.|+|++|+|++..|..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4468999999998 5776653  8999999999999999885 8999999999999999997777778999999999999


Q ss_pred             CCcCcccCCcc-CC-CCCCc
Q 042915          482 NNNLDGQIPDG-LW-KPGLN  499 (501)
Q Consensus       482 ~N~l~g~lP~~-~~-~~~L~  499 (501)
                      +|+|+ .+|.. +. +++|+
T Consensus        87 ~N~l~-~~~~~~~~~l~~L~  105 (170)
T 3g39_A           87 DNQLK-SIPRGAFDNLKSLT  105 (170)
T ss_dssp             SSCCC-CCCTTTTTTCTTCC
T ss_pred             CCccC-EeCHHHhcCCCCCC
Confidence            99999 57664 54 55553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.14  E-value=1.3e-10  Score=113.35  Aligned_cols=108  Identities=29%  Similarity=0.369  Sum_probs=62.4

Q ss_pred             CCCCCCCCCCCCCcceeeecCCCC--------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCC
Q 042915          378 DWNGDPCLPWENSWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTL  448 (501)
Q Consensus       378 ~W~~d~C~~~~~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l  448 (501)
                      .|.+..|.. ...+..+.|....+        .+++.|+|++|++++..+..|.++++|++|+|++|+++...+. +..+
T Consensus         6 ~~~~~~C~c-~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l   84 (270)
T 2o6q_A            6 KKDGGVCSC-NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL   84 (270)
T ss_dssp             GGGTCSBEE-ETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred             CCCCCCCEe-CCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence            466666632 12455666653322        2466677777777655555666666666666666666655443 3556


Q ss_pred             CCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCc
Q 042915          449 TALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       449 ~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  486 (501)
                      ++|+.|+|++|++.+..+..+..+++|++|+|++|+++
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  122 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK  122 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC
Confidence            66666666666665444444555555555555555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.14  E-value=1.5e-10  Score=113.16  Aligned_cols=110  Identities=21%  Similarity=0.192  Sum_probs=91.5

Q ss_pred             Ccceeeec-CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCcc
Q 042915          390 SWTGVTCN-KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQ  467 (501)
Q Consensus       390 ~w~gv~c~-~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~  467 (501)
                      ...++... ...+++|+.|+|++|++++..+..+.++++|++|+|++|++++.++. +..+++|+.|+|++|++++..+.
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            34444443 35678999999999999988888899999999999999999988875 68999999999999999987777


Q ss_pred             ccCCCCCCCEEEccCCcCcccCCccCC-CCCCc
Q 042915          468 TLSQLPILREIFLQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                      .++.+++|+.|+|++|++++..|..+. +++|+
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             HhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            889999999999999999964444454 55543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=1.1e-10  Score=117.92  Aligned_cols=97  Identities=20%  Similarity=0.297  Sum_probs=77.4

Q ss_pred             CCcceeeecCC----------CCeeEEEecCCC-CcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEc
Q 042915          389 NSWTGVTCNKS----------KHTRVVSIDLKG-FEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHL  456 (501)
Q Consensus       389 ~~w~gv~c~~~----------~l~~l~~L~Ls~-n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~L  456 (501)
                      |.|..+.|...          .+.+|+.|+|++ |+|++..+..|.+|++|+.|+|++|+|++.+|. |.+|++|+.|+|
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            46777777643          345688899986 888888778888999999999999999888884 688999999999


Q ss_pred             cCCcCCccCccccCCCCCCCEEEccCCcCc
Q 042915          457 ENNQFEGWIPQTLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       457 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  486 (501)
                      ++|+|++..+..+..++ |+.|+|.+|+|.
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            99999865555565555 899999998886

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.12  E-value=1e-10  Score=119.17  Aligned_cols=91  Identities=23%  Similarity=0.245  Sum_probs=49.2

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      +.+|+.|+|++|+|++..+..|.++++|+.|+|++|+|++..+. |..+++|+.|+|++|++.+..|..|..+++|+.|+
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            34445555555555544444455555555555555555544442 45555555555555555555555555556666666


Q ss_pred             ccCCcCcccCCcc
Q 042915          480 LQNNNLDGQIPDG  492 (501)
Q Consensus       480 Ls~N~l~g~lP~~  492 (501)
                      |++|+|+ .+|..
T Consensus       143 L~~N~l~-~l~~~  154 (361)
T 2xot_A          143 LSQNQIS-RFPVE  154 (361)
T ss_dssp             CCSSCCC-SCCGG
T ss_pred             CCCCcCC-eeCHH
Confidence            6666665 45544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.12  E-value=2.4e-10  Score=112.98  Aligned_cols=99  Identities=28%  Similarity=0.375  Sum_probs=87.6

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ..+++|+.|+|++|+|+ .+|..+..+++|++|+|++|++++.++. |.++++|+.|+|++|++++..+..|..+++|+.
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence            45778999999999998 7888899999999999999999988874 899999999999999999777777899999999


Q ss_pred             EEccCCcCcccCCccCC--CCCCc
Q 042915          478 IFLQNNNLDGQIPDGLW--KPGLN  499 (501)
Q Consensus       478 L~Ls~N~l~g~lP~~~~--~~~L~  499 (501)
                      |+|++|+|+ .+|.+++  +++|+
T Consensus       153 L~L~~N~l~-~l~~~~~~~l~~L~  175 (290)
T 1p9a_G          153 LSLANNNLT-ELPAGLLNGLENLD  175 (290)
T ss_dssp             EECTTSCCS-CCCTTTTTTCTTCC
T ss_pred             EECCCCcCC-ccCHHHhcCcCCCC
Confidence            999999999 7887654  55543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.12  E-value=3.3e-11  Score=106.53  Aligned_cols=96  Identities=20%  Similarity=0.247  Sum_probs=81.7

Q ss_pred             CeeEEEecCCCCccc-ccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEIS-GTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      .++++.|++++|.++ +.+|..+..+++|+.|++++|++++. +.+..+++|+.|+|++|++++.+|..++.+++|+.|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            467889999999998 78888889999999999999999877 7788899999999999999977888888899999999


Q ss_pred             ccCCcCcccCC--ccCC-CCCC
Q 042915          480 LQNNNLDGQIP--DGLW-KPGL  498 (501)
Q Consensus       480 Ls~N~l~g~lP--~~~~-~~~L  498 (501)
                      +++|++++ +|  ..+. +++|
T Consensus        95 ls~N~i~~-~~~~~~~~~l~~L  115 (149)
T 2je0_A           95 LSGNKIKD-LSTIEPLKKLENL  115 (149)
T ss_dssp             CTTSCCCS-HHHHGGGGGCTTC
T ss_pred             CCCCcCCC-hHHHHHHhhCCCC
Confidence            99999984 43  5555 5544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.12  E-value=1.4e-10  Score=118.29  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=84.0

Q ss_pred             Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCcc
Q 042915          390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQ  467 (501)
Q Consensus       390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~  467 (501)
                      ...++.. ....+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++..+ .|.++++|+.|+|++|+|++..+.
T Consensus        75 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            4555553 35677899999999999998888889999999999999999998877 589999999999999999954444


Q ss_pred             cc---CCCCCCCEEEccCCcCcccCCc
Q 042915          468 TL---SQLPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       468 ~~---~~l~~L~~L~Ls~N~l~g~lP~  491 (501)
                      .+   ..+++|+.|+|++|+|+ .+|.
T Consensus       155 ~~~~~~~l~~L~~L~L~~N~l~-~l~~  180 (361)
T 2xot_A          155 LIKDGNKLPKLMLLDLSSNKLK-KLPL  180 (361)
T ss_dssp             GTC----CTTCCEEECCSSCCC-CCCH
T ss_pred             HhcCcccCCcCCEEECCCCCCC-ccCH
Confidence            44   67899999999999999 6774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.11  E-value=1.2e-10  Score=126.23  Aligned_cols=104  Identities=17%  Similarity=0.198  Sum_probs=71.0

Q ss_pred             Ccceeeec-CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCc-cCc
Q 042915          390 SWTGVTCN-KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEG-WIP  466 (501)
Q Consensus       390 ~w~gv~c~-~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g-~~P  466 (501)
                      ...++.-. ..++++|+.|+|++|+|++..+..|.+|++|++|+|++|++++.++. |+++++|+.|+|++|.+++ .+|
T Consensus        87 ~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~  166 (635)
T 4g8a_A           87 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP  166 (635)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCc
Confidence            44455432 45567777777777777766666677777777777777777766653 6777777777777777764 356


Q ss_pred             cccCCCCCCCEEEccCCcCcccCCccC
Q 042915          467 QTLSQLPILREIFLQNNNLDGQIPDGL  493 (501)
Q Consensus       467 ~~~~~l~~L~~L~Ls~N~l~g~lP~~~  493 (501)
                      ..++.+++|++|+|++|+|++..|..+
T Consensus       167 ~~~~~l~~L~~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          167 EYFSNLTNLEHLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             GGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             hhhccchhhhhhcccCccccccccccc
Confidence            667777777777777777775444444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.10  E-value=2.3e-10  Score=104.41  Aligned_cols=91  Identities=22%  Similarity=0.366  Sum_probs=78.2

Q ss_pred             EEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCC
Q 042915          405 VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN  483 (501)
Q Consensus       405 ~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N  483 (501)
                      +.+++++|+|. .+|..+.  ++|+.|+|++|+|++.+| .+.++++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57999999997 6777664  899999999999999988 4899999999999999999766666899999999999999


Q ss_pred             cCcccCCcc-CC-CCCCc
Q 042915          484 NLDGQIPDG-LW-KPGLN  499 (501)
Q Consensus       484 ~l~g~lP~~-~~-~~~L~  499 (501)
                      +|+ .+|.. +. +++|+
T Consensus        92 ~l~-~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           92 HLK-SIPRGAFDNLKSLT  108 (174)
T ss_dssp             CCC-CCCTTTTTTCTTCS
T ss_pred             ccc-eeCHHHhccccCCC
Confidence            999 67765 54 55553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=1e-10  Score=126.62  Aligned_cols=100  Identities=25%  Similarity=0.234  Sum_probs=88.0

Q ss_pred             CcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccC-ccc
Q 042915          390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWI-PQT  468 (501)
Q Consensus       390 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~-P~~  468 (501)
                      ...+++. ...+++|+.|+|++|+|+ .+|..+++|++|+.|+|++|+|++ +|.++.+++|+.|+|++|+|++.. |..
T Consensus       452 ~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~  528 (567)
T 1dce_A          452 DLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQP  528 (567)
T ss_dssp             CCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred             CCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHH
Confidence            4455543 556789999999999999 889999999999999999999998 568999999999999999999876 999


Q ss_pred             cCCCCCCCEEEccCCcCcccCCccC
Q 042915          469 LSQLPILREIFLQNNNLDGQIPDGL  493 (501)
Q Consensus       469 ~~~l~~L~~L~Ls~N~l~g~lP~~~  493 (501)
                      ++.+++|+.|+|++|+|++ +|+.+
T Consensus       529 l~~l~~L~~L~L~~N~l~~-~~~~~  552 (567)
T 1dce_A          529 LVSCPRLVLLNLQGNSLCQ-EEGIQ  552 (567)
T ss_dssp             GGGCTTCCEEECTTSGGGG-SSSCT
T ss_pred             HhcCCCCCEEEecCCcCCC-CccHH
Confidence            9999999999999999995 55443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.08  E-value=2.9e-10  Score=110.93  Aligned_cols=105  Identities=17%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCc-cCc
Q 042915          390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEG-WIP  466 (501)
Q Consensus       390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g-~~P  466 (501)
                      ...++.. ....+++|+.|+|++|.+++..+..+.++++|++|++++|++.+..+ .+..+++|+.|+|++|++.+ .+|
T Consensus        63 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~  142 (276)
T 2z62_A           63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP  142 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCc
Confidence            3444443 24567889999999999998888889999999999999999998877 58999999999999999986 368


Q ss_pred             cccCCCCCCCEEEccCCcCcccCCccCC
Q 042915          467 QTLSQLPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       467 ~~~~~l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      ..++.+++|+.|+|++|++++..+..+.
T Consensus       143 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A          143 EYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             GGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             hhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence            9999999999999999999954444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.08  E-value=3e-10  Score=123.14  Aligned_cols=105  Identities=21%  Similarity=0.196  Sum_probs=86.8

Q ss_pred             Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCc-cCc
Q 042915          390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEG-WIP  466 (501)
Q Consensus       390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g-~~P  466 (501)
                      ...++.. ...++++|+.|+|++|.+++..|..|+++++|++|+|++|++++..+ .++++++|+.|+|++|.+.+ .+|
T Consensus        67 ~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp  146 (606)
T 3vq2_A           67 EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP  146 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech
Confidence            4455543 34667889999999999998888889999999999999999988775 58899999999999999886 678


Q ss_pred             cccCCCCCCCEEEccCCcCcccCCccCC
Q 042915          467 QTLSQLPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       467 ~~~~~l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      ..++++++|++|+|++|++++..|..+.
T Consensus       147 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  174 (606)
T 3vq2_A          147 AYFSNLTNLVHVDLSYNYIQTITVNDLQ  174 (606)
T ss_dssp             GGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred             HhHhhcCCCCEEEccCCcceecChhhhh
Confidence            8999999999999999999865565554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.07  E-value=3.5e-10  Score=119.15  Aligned_cols=91  Identities=19%  Similarity=0.181  Sum_probs=48.9

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      +++.|+|++|++++..+..|.++++|++|+|++|++++..| .|.++++|+.|+|++|++++..+..|.++++|+.|+|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            45556666666655555555555555555555555555544 35555555555555555553333345555555555555


Q ss_pred             CCcCcccCCccC
Q 042915          482 NNNLDGQIPDGL  493 (501)
Q Consensus       482 ~N~l~g~lP~~~  493 (501)
                      +|++.+..|..+
T Consensus       113 ~n~i~~~~~~~~  124 (477)
T 2id5_A          113 ENKIVILLDYMF  124 (477)
T ss_dssp             TSCCCEECTTTT
T ss_pred             CCccccCChhHc
Confidence            555554333333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.07  E-value=1.9e-10  Score=123.11  Aligned_cols=97  Identities=19%  Similarity=0.152  Sum_probs=70.2

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      ++|+.|+|++|++++..|..|.++++|++|+|++|++++.+| .+.++++|++|+|++|++++..|..++.+++|++|+|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            367778888888777777777778888888888888777766 4677777888888888777666666777777788888


Q ss_pred             cCCcCcc-cCCccCC-CCCC
Q 042915          481 QNNNLDG-QIPDGLW-KPGL  498 (501)
Q Consensus       481 s~N~l~g-~lP~~~~-~~~L  498 (501)
                      ++|++++ .+|..+. +++|
T Consensus       106 s~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTC
T ss_pred             CCCcccccchhhhhhccCCc
Confidence            7777764 2455554 4443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.06  E-value=3.5e-10  Score=110.87  Aligned_cols=100  Identities=23%  Similarity=0.316  Sum_probs=84.2

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ...+++|+.|+|++|++++..+..+..+++|+.|+|++|++++.++. +..+++|+.|+|++|++.+..|..+..+++|+
T Consensus       125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence            34577899999999999877777789999999999999999887774 78899999999999999988899999999999


Q ss_pred             EEEccCCcCcccCCc-cCC-CCCC
Q 042915          477 EIFLQNNNLDGQIPD-GLW-KPGL  498 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~-~~~-~~~L  498 (501)
                      .|+|++|++++ +|. .+. ++.|
T Consensus       205 ~L~l~~n~l~~-~~~~~~~~l~~L  227 (285)
T 1ozn_A          205 TLYLFANNLSA-LPTEALAPLRAL  227 (285)
T ss_dssp             EEECCSSCCSC-CCHHHHTTCTTC
T ss_pred             EeeCCCCcCCc-CCHHHcccCccc
Confidence            99999999994 654 354 4444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.06  E-value=1.1e-10  Score=105.42  Aligned_cols=95  Identities=26%  Similarity=0.286  Sum_probs=83.7

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCC--cCCCCCCCCCEEEccCCcCCccCc---cccCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQI--PEMKTLTALETLHLENNQFEGWIP---QTLSQL  472 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~--p~~~~l~~L~~L~Ls~N~l~g~~P---~~~~~l  472 (501)
                      ...+++|+.|+|++|++++.+|..+..+++|+.|+|++|++++..  +.+..+++|+.|+|++|.+++..+   ..+..+
T Consensus        67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l  146 (168)
T 2ell_A           67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL  146 (168)
T ss_dssp             CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred             hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence            345678999999999999888888888999999999999999865  468999999999999999996554   489999


Q ss_pred             CCCCEEEccCCcCcccCCccC
Q 042915          473 PILREIFLQNNNLDGQIPDGL  493 (501)
Q Consensus       473 ~~L~~L~Ls~N~l~g~lP~~~  493 (501)
                      ++|+.|++++|.+. ++|.+.
T Consensus       147 ~~L~~L~l~~n~~~-~~~~~~  166 (168)
T 2ell_A          147 PQLTYLDGYDREDQ-EAPDSD  166 (168)
T ss_dssp             SSCCEETTEETTSC-BCCSSS
T ss_pred             ccCcEecCCCCChh-hccccc
Confidence            99999999999998 788753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.06  E-value=4.8e-10  Score=117.52  Aligned_cols=102  Identities=25%  Similarity=0.356  Sum_probs=86.7

Q ss_pred             CcceeeecCCCC--------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCc
Q 042915          390 SWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQ  460 (501)
Q Consensus       390 ~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~  460 (501)
                      .|..+.|...++        .+++.|+|++|+|++..+..|.++++|+.|+|++|++++..+ .|.++++|+.|+|++|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            356788865432        368899999999998889999999999999999999998877 48999999999999999


Q ss_pred             CCccCccccCCCCCCCEEEccCCcCcccCCcc
Q 042915          461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPDG  492 (501)
Q Consensus       461 l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~  492 (501)
                      +++..+..|..+++|++|+|++|+|+ .+|..
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~  165 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSY  165 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCC-EECTT
T ss_pred             CCccChhhhcccCCCCEEECCCCCcc-eeCHh
Confidence            99776777999999999999999998 56653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.05  E-value=4.9e-10  Score=109.82  Aligned_cols=99  Identities=24%  Similarity=0.332  Sum_probs=71.0

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCc-CCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNK-LWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ..+++|+.|+|++|.+++..|..+.++++|++|+|++|+ +....+ .+..+++|+.|+|++|++.+..|..+..+++|+
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  132 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ  132 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence            445677777777777777667777777778888888776 665545 467778888888888888776677777788888


Q ss_pred             EEEccCCcCcccCCcc-CC-CCCC
Q 042915          477 EIFLQNNNLDGQIPDG-LW-KPGL  498 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~~-~~-~~~L  498 (501)
                      +|+|++|+++ .+|.. +. +++|
T Consensus       133 ~L~l~~n~l~-~~~~~~~~~l~~L  155 (285)
T 1ozn_A          133 YLYLQDNALQ-ALPDDTFRDLGNL  155 (285)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             EEECCCCccc-ccCHhHhccCCCc
Confidence            8888888887 45543 43 4444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.05  E-value=6.5e-10  Score=108.30  Aligned_cols=99  Identities=27%  Similarity=0.373  Sum_probs=86.6

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++.++. +..+++|+.|+|++|++++..+..|..+++|+.
T Consensus       106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence            4678999999999999988888899999999999999999987775 799999999999999999777778999999999


Q ss_pred             EEccCCcCcccCCcc-CC-CCCC
Q 042915          478 IFLQNNNLDGQIPDG-LW-KPGL  498 (501)
Q Consensus       478 L~Ls~N~l~g~lP~~-~~-~~~L  498 (501)
                      |+|++|+|+ .+|.. +. ++.|
T Consensus       186 L~L~~N~l~-~~~~~~~~~l~~L  207 (270)
T 2o6q_A          186 LKLDNNQLK-RVPEGAFDSLEKL  207 (270)
T ss_dssp             EECCSSCCS-CCCTTTTTTCTTC
T ss_pred             EECCCCcCC-cCCHHHhccccCC
Confidence            999999999 57765 43 4544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.04  E-value=7e-11  Score=131.60  Aligned_cols=93  Identities=25%  Similarity=0.271  Sum_probs=73.6

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ..+++|+.|+|++|.|+ .+|..|++|++|+.|+|++|+|+.++..++.|++|+.|+|++|.|+ .+|..|+.|++|+.|
T Consensus       244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL  321 (727)
T ss_dssp             GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred             cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence            35667888888888888 7788888888888888888888844446788888888888888886 778788888888888


Q ss_pred             EccCCcCcccCCccC
Q 042915          479 FLQNNNLDGQIPDGL  493 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~~  493 (501)
                      +|++|+|+|.+|..+
T Consensus       322 ~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          322 GVEGNPLEKQFLKIL  336 (727)
T ss_dssp             ECTTSCCCSHHHHHH
T ss_pred             eCCCCccCCCChHHH
Confidence            888888887666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.04  E-value=1.2e-10  Score=106.07  Aligned_cols=86  Identities=22%  Similarity=0.237  Sum_probs=71.7

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccCcc--ccCCCCCCCEEE
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQ--TLSQLPILREIF  479 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~P~--~~~~l~~L~~L~  479 (501)
                      +|+.|+|++|+|++.  +.+..+++|+.|+|++|++++.++.+ ..+++|+.|+|++|++. .+|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            788899999998865  57888889999999999988776664 88889999999999886 5666  788888999999


Q ss_pred             ccCCcCcccCCcc
Q 042915          480 LQNNNLDGQIPDG  492 (501)
Q Consensus       480 Ls~N~l~g~lP~~  492 (501)
                      |++|+++ .+|..
T Consensus       120 l~~N~i~-~~~~~  131 (176)
T 1a9n_A          120 ILRNPVT-NKKHY  131 (176)
T ss_dssp             CCSSGGG-GSTTH
T ss_pred             ecCCCCC-CcHhH
Confidence            9999988 67764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.04  E-value=4.6e-10  Score=109.53  Aligned_cols=101  Identities=19%  Similarity=0.234  Sum_probs=71.6

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ...+++|+.|+|++|++++..+..+.++++|++|+|++|++++..+ .+.++++|+.|+|++|++.+..+..++.+++|+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            3445677777777777776666677777777777777777777665 367777777777777777765555677778888


Q ss_pred             EEEccCCcCcc-cCCccCC-CCCC
Q 042915          477 EIFLQNNNLDG-QIPDGLW-KPGL  498 (501)
Q Consensus       477 ~L~Ls~N~l~g-~lP~~~~-~~~L  498 (501)
                      +|+|++|.+++ .+|..+. +++|
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L  151 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNL  151 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             EEECcCCccceecCchhhccCCCC
Confidence            88888888764 3566665 5544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.03  E-value=4.6e-10  Score=117.19  Aligned_cols=91  Identities=23%  Similarity=0.280  Sum_probs=51.2

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      .+++|+.|+|++|.+++..|..+.++++|+.|+|++|++++..| .+..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus       321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  400 (455)
T 3v47_A          321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI  400 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence            34555555555555555555555555556666666665555544 35555556666666665554444445555556666


Q ss_pred             EccCCcCcccCC
Q 042915          479 FLQNNNLDGQIP  490 (501)
Q Consensus       479 ~Ls~N~l~g~lP  490 (501)
                      +|++|++++..|
T Consensus       401 ~l~~N~l~~~~~  412 (455)
T 3v47_A          401 WLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCBCCCTT
T ss_pred             EccCCCcccCCC
Confidence            666666555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.02  E-value=5e-10  Score=121.39  Aligned_cols=100  Identities=23%  Similarity=0.286  Sum_probs=65.6

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      .++++|+.|+|++|++++..|..|.++++|++|+|++|++++..| .++++++|++|+|++|++.+..|..++.+++|++
T Consensus        53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  132 (606)
T 3vq2_A           53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK  132 (606)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred             cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence            345566666666666666666666667777777777777666655 3666777777777777776555566777777777


Q ss_pred             EEccCCcCcc-cCCccCC-CCCC
Q 042915          478 IFLQNNNLDG-QIPDGLW-KPGL  498 (501)
Q Consensus       478 L~Ls~N~l~g-~lP~~~~-~~~L  498 (501)
                      |+|++|.+++ .+|..+. +++|
T Consensus       133 L~L~~n~l~~~~lp~~~~~l~~L  155 (606)
T 3vq2_A          133 LNVAHNFIHSCKLPAYFSNLTNL  155 (606)
T ss_dssp             EECCSSCCCCCCCCGGGGTCTTC
T ss_pred             EeCCCCcccceechHhHhhcCCC
Confidence            7777777764 4566665 5444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.01  E-value=8.6e-11  Score=128.88  Aligned_cols=109  Identities=19%  Similarity=0.256  Sum_probs=89.0

Q ss_pred             CCcceeeecCCCCeeEEEecCCCCccccc-----------------Cccccc--CCCCCCeeecCCCcCCCCCc-CCCCC
Q 042915          389 NSWTGVTCNKSKHTRVVSIDLKGFEISGT-----------------LPESIG--NLTALKHLRLGGNKLWGQIP-EMKTL  448 (501)
Q Consensus       389 ~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~-----------------~p~~~~--~L~~L~~L~Ls~N~l~~~~p-~~~~l  448 (501)
                      +...+++-..+++++|+.|+|++|.++|.                 +|+.++  +|++|++|+|++|++.+.+| .++++
T Consensus       193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            35667776677788899999999999885                 888888  99999999999999988888 47889


Q ss_pred             CCCCEEEccCCc-CCc-cCccccCCC------CCCCEEEccCCcCcccCCc--cCC-CCCC
Q 042915          449 TALETLHLENNQ-FEG-WIPQTLSQL------PILREIFLQNNNLDGQIPD--GLW-KPGL  498 (501)
Q Consensus       449 ~~L~~L~Ls~N~-l~g-~~P~~~~~l------~~L~~L~Ls~N~l~g~lP~--~~~-~~~L  498 (501)
                      ++|+.|+|++|+ ++| .+|..++.+      ++|++|+|++|+++ .+|.  .+. +++|
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L  332 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL  332 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCC
Confidence            999999999998 888 788877765      78888888888888 7887  665 5544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.01  E-value=3.2e-10  Score=126.22  Aligned_cols=99  Identities=24%  Similarity=0.308  Sum_probs=88.0

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ...+.+|+.|+|++|.+. .+|..+.+|++|++|+|++|+|+.+++.++.|++|+.|+|++|+|+ .+|..|+.|++|++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY  297 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred             hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence            445778999999999998 7888888999999999999999954446999999999999999999 88999999999999


Q ss_pred             EEccCCcCcccCCccCC-CCCCc
Q 042915          478 IFLQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       478 L~Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                      |+|++|.|+ .||.+|+ +++|+
T Consensus       298 L~L~~N~l~-~lp~~~~~l~~L~  319 (727)
T 4b8c_D          298 FYFFDNMVT-TLPWEFGNLCNLQ  319 (727)
T ss_dssp             EECCSSCCC-CCCSSTTSCTTCC
T ss_pred             EECCCCCCC-ccChhhhcCCCcc
Confidence            999999998 8999887 66654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.00  E-value=7.1e-10  Score=109.76  Aligned_cols=90  Identities=20%  Similarity=0.284  Sum_probs=55.9

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCC-CC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLP-IL  475 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~-~L  475 (501)
                      ...+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+ .+..+++|+.|+|++|++.+..|..+..++ +|
T Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  250 (306)
T 2z66_A          171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL  250 (306)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred             HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence            3445566666666666666556666666666666666666665554 356666666666666666666666666653 66


Q ss_pred             CEEEccCCcCcc
Q 042915          476 REIFLQNNNLDG  487 (501)
Q Consensus       476 ~~L~Ls~N~l~g  487 (501)
                      +.|+|++|++++
T Consensus       251 ~~L~L~~N~~~~  262 (306)
T 2z66_A          251 AFLNLTQNDFAC  262 (306)
T ss_dssp             CEEECTTCCEEC
T ss_pred             CEEEccCCCeec
Confidence            666666666653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.99  E-value=6.8e-10  Score=112.36  Aligned_cols=96  Identities=21%  Similarity=0.176  Sum_probs=75.2

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      ++|+.|+|++|++++..+..+.++++|+.|+|++|++++..+. +.++++|+.|+|++|++++..+..++.+++|++|+|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            3678888888888876666788888888888888888887764 788888888888888888554555888888888888


Q ss_pred             cCCcCcccCCc--cCC-CCCC
Q 042915          481 QNNNLDGQIPD--GLW-KPGL  498 (501)
Q Consensus       481 s~N~l~g~lP~--~~~-~~~L  498 (501)
                      ++|+++ .+|.  .+. +++|
T Consensus       132 ~~n~l~-~l~~~~~~~~l~~L  151 (353)
T 2z80_A          132 LGNPYK-TLGETSLFSHLTKL  151 (353)
T ss_dssp             TTCCCS-SSCSSCSCTTCTTC
T ss_pred             CCCCCc-ccCchhhhccCCCC
Confidence            888888 6776  343 4444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.99  E-value=3.7e-10  Score=107.83  Aligned_cols=88  Identities=17%  Similarity=0.277  Sum_probs=69.1

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCc-CCCCCc-CCCCCCCCCEEEccC-CcCCccCccccCCCCCCCEEE
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNK-LWGQIP-EMKTLTALETLHLEN-NQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~~~~p-~~~~l~~L~~L~Ls~-N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      +++.|+|++|++++..+..|.++++|+.|++++|+ ++...+ .+.++++|+.|+|++ |++++..+..|..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67788888888887777678888888888888886 776666 467888888888887 888866666777888888888


Q ss_pred             ccCCcCcccCCc
Q 042915          480 LQNNNLDGQIPD  491 (501)
Q Consensus       480 Ls~N~l~g~lP~  491 (501)
                      |++|+++ .+|.
T Consensus       112 l~~n~l~-~lp~  122 (239)
T 2xwt_C          112 IFNTGLK-MFPD  122 (239)
T ss_dssp             EEEECCC-SCCC
T ss_pred             CCCCCCc-cccc
Confidence            8888887 4775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.99  E-value=5.8e-10  Score=120.90  Aligned_cols=84  Identities=15%  Similarity=0.178  Sum_probs=47.3

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      +++.|+|++|.+++..|..|.++++|++|+|++|++.+..| .|.++++|+.|+|++|++.+..|..|+.+++|++|+|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            45555666666555555555555555555555555555544 25555555555555555555555555555555555555


Q ss_pred             CCcCc
Q 042915          482 NNNLD  486 (501)
Q Consensus       482 ~N~l~  486 (501)
                      +|.++
T Consensus       114 ~n~i~  118 (606)
T 3t6q_A          114 QTGIS  118 (606)
T ss_dssp             TSCCS
T ss_pred             ccCcc
Confidence            55555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.99  E-value=9.4e-10  Score=115.81  Aligned_cols=93  Identities=19%  Similarity=0.235  Sum_probs=68.7

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ..++++|+.|+|++|++++..+..|.++++|++|+|++|++.+.++ .+..+++|+.|+|++|.+.+..|..|..+++|+
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  155 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE  155 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred             hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence            4456677777777777776555567777778888888777777766 367777788888888877777777777777888


Q ss_pred             EEEccCCcCcccCCc
Q 042915          477 EIFLQNNNLDGQIPD  491 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~  491 (501)
                      .|+|++|+++ .+|.
T Consensus       156 ~L~l~~n~l~-~~~~  169 (477)
T 2id5_A          156 QLTLEKCNLT-SIPT  169 (477)
T ss_dssp             EEEEESCCCS-SCCH
T ss_pred             EEECCCCcCc-ccCh
Confidence            8888888777 4554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.98  E-value=9.9e-10  Score=110.79  Aligned_cols=86  Identities=15%  Similarity=0.166  Sum_probs=77.8

Q ss_pred             EecCCCC-cccccCcccccCCCCCCeeecCC-CcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915          406 SIDLKGF-EISGTLPESIGNLTALKHLRLGG-NKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN  482 (501)
Q Consensus       406 ~L~Ls~n-~l~g~~p~~~~~L~~L~~L~Ls~-N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~  482 (501)
                      .++++++ +|+ .+|. +..+++|+.|+|++ |+|++.++ .|.+|++|+.|+|++|+|++..|..|++|++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4688888 898 5788 99999999999996 99999887 489999999999999999999999999999999999999


Q ss_pred             CcCcccCCccCC
Q 042915          483 NNLDGQIPDGLW  494 (501)
Q Consensus       483 N~l~g~lP~~~~  494 (501)
                      |+|+ .+|..++
T Consensus        90 N~l~-~~~~~~~  100 (347)
T 2ifg_A           90 NALE-SLSWKTV  100 (347)
T ss_dssp             SCCS-CCCSTTT
T ss_pred             Cccc-eeCHHHc
Confidence            9999 6777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.97  E-value=4.6e-10  Score=104.12  Aligned_cols=88  Identities=18%  Similarity=0.247  Sum_probs=53.6

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      +++|+.|++++|++++..+..+..+++|+.|+|++|++++..+ .+..+++|+.|+|++|++.+.+| .+..+++|+.|+
T Consensus        87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~  165 (197)
T 4ezg_A           87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN  165 (197)
T ss_dssp             CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred             CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence            4556666666666665556666666666666666666665444 35666666666666666222444 466666666666


Q ss_pred             ccCCcCcccCC
Q 042915          480 LQNNNLDGQIP  490 (501)
Q Consensus       480 Ls~N~l~g~lP  490 (501)
                      +++|+++ .+|
T Consensus       166 l~~n~i~-~~~  175 (197)
T 4ezg_A          166 IQFDGVH-DYR  175 (197)
T ss_dssp             CTTBCCC-CCT
T ss_pred             CCCCCCc-ChH
Confidence            6666666 344

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.97  E-value=5.9e-10  Score=101.49  Aligned_cols=94  Identities=26%  Similarity=0.337  Sum_probs=78.6

Q ss_pred             CeeEEEecCCCCcccccCcccccCCC-CCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLT-ALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~-~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      +.+|+.|++++|+++. +|. +..+. +|+.|+|++|++++. +.+..+++|+.|+|++|++++..|..++.+++|+.|+
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            4578999999999994 555 55555 999999999999987 7899999999999999999965445568999999999


Q ss_pred             ccCCcCcccCCc--cCC-CCCC
Q 042915          480 LQNNNLDGQIPD--GLW-KPGL  498 (501)
Q Consensus       480 Ls~N~l~g~lP~--~~~-~~~L  498 (501)
                      |++|+|+ .+|.  .+. +++|
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L  115 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSL  115 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTC
T ss_pred             CCCCcCC-cchhhHhhhcCCCC
Confidence            9999997 7887  555 5544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.97  E-value=7.1e-10  Score=109.77  Aligned_cols=101  Identities=19%  Similarity=0.221  Sum_probs=83.2

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCC-CCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWG-QIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPIL  475 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~-~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L  475 (501)
                      ...+++|+.|++++|.+.+..+..+.++++|+.|+|++|++++ .+| .+..+++|+.|+|++|++++..|..+..+++|
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  201 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  201 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence            3456788999999999998888889999999999999999987 344 57889999999999999998888899999999


Q ss_pred             CEEEccCCcCcccCCccCC-CCCC
Q 042915          476 REIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       476 ~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      +.|+|++|++++..+..+. +++|
T Consensus       202 ~~L~L~~N~l~~~~~~~~~~l~~L  225 (306)
T 2z66_A          202 QVLNMSHNNFFSLDTFPYKCLNSL  225 (306)
T ss_dssp             CEEECTTSCCSBCCSGGGTTCTTC
T ss_pred             CEEECCCCccCccChhhccCcccC
Confidence            9999999999843333444 4444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.97  E-value=6.8e-10  Score=120.09  Aligned_cols=93  Identities=29%  Similarity=0.410  Sum_probs=82.3

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN  482 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~  482 (501)
                      .|+.|+|++|+|++ +|. ++.|++|+.|+|++|+|+..++.++.+++|+.|+|++|+|++ +| .++.+++|+.|+|++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            47789999999996 676 999999999999999999555579999999999999999996 77 899999999999999


Q ss_pred             CcCcccC-CccCC-CCCCc
Q 042915          483 NNLDGQI-PDGLW-KPGLN  499 (501)
Q Consensus       483 N~l~g~l-P~~~~-~~~L~  499 (501)
                      |+|++.. |..+. +++|+
T Consensus       518 N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCC
T ss_pred             CCCCCCCCcHHHhcCCCCC
Confidence            9999654 88887 66654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.95  E-value=7e-10  Score=125.56  Aligned_cols=88  Identities=22%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             CCeeEEEecCCCCcccccC-cccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccc--cCCCCCC
Q 042915          400 KHTRVVSIDLKGFEISGTL-PESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQT--LSQLPIL  475 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~-p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~--~~~l~~L  475 (501)
                      ++++|+.|+|++|.+.+.+ |..|.+|++|++|+|++|++++..| .|.++++|+.|+|++|.+.+.+|..  ++.+++|
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            3444455555555333333 4445555555555555555555544 3455555555555555555544443  5555555


Q ss_pred             CEEEccCCcCcc
Q 042915          476 REIFLQNNNLDG  487 (501)
Q Consensus       476 ~~L~Ls~N~l~g  487 (501)
                      ++|+|++|.+++
T Consensus       126 ~~L~Ls~N~l~~  137 (844)
T 3j0a_A          126 TRLDLSKNQIRS  137 (844)
T ss_dssp             CEEEEESCCCCC
T ss_pred             CEEECCCCcccc
Confidence            555555555553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.95  E-value=1.5e-09  Score=113.36  Aligned_cols=101  Identities=25%  Similarity=0.345  Sum_probs=75.5

Q ss_pred             CcceeeecCCCC--------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCc
Q 042915          390 SWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQ  460 (501)
Q Consensus       390 ~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~  460 (501)
                      .+..+.|...++        .+++.|+|++|++++..+..|.++++|+.|+|++|++++..+ .|.++++|+.|+|++|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            356677765332        356778888888887777788888888888888888877766 47778888888888888


Q ss_pred             CCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915          461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       461 l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~  491 (501)
                      +++..+..|..+++|++|+|++|+|+ .+|.
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~  153 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPS  153 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCC-EECT
T ss_pred             CCeeCHhHhhccccCceeeCCCCccc-ccCH
Confidence            88555557788888888888888887 4554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.95  E-value=1.8e-09  Score=115.82  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=86.2

Q ss_pred             Ccceeeec-CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCc-cCc
Q 042915          390 SWTGVTCN-KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEG-WIP  466 (501)
Q Consensus       390 ~w~gv~c~-~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g-~~P  466 (501)
                      ...++... ..++++|+.|+|++|.+++..|..|.++++|++|++++|++++..+ .++++++|++|+|++|.+.+ .+|
T Consensus        63 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp  142 (570)
T 2z63_A           63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP  142 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh
Confidence            34555432 4567889999999999988888889999999999999999987766 58899999999999999986 578


Q ss_pred             cccCCCCCCCEEEccCCcCcccCCccCC
Q 042915          467 QTLSQLPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       467 ~~~~~l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      ..++++++|++|++++|++++..|..+.
T Consensus       143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~  170 (570)
T 2z63_A          143 EYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (570)
T ss_dssp             GGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred             hhhcccCCCCEEeCcCCccceecHHHcc
Confidence            9999999999999999999855455554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.94  E-value=1.7e-09  Score=117.17  Aligned_cols=97  Identities=16%  Similarity=0.076  Sum_probs=64.2

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ..++++|+.|+|++|++++..|..|.++++|++|+|++|++++..+ .++++++|++|+|++|++.+..+..+..+++|+
T Consensus        77 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  156 (606)
T 3t6q_A           77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK  156 (606)
T ss_dssp             TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred             ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC
Confidence            3456677777777777776667777777777777777777776544 467777777777777777753323344477777


Q ss_pred             EEEccCCcCcccCCccCC
Q 042915          477 EIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~~~~  494 (501)
                      .|+|++|++++..|..+.
T Consensus       157 ~L~L~~n~l~~~~~~~~~  174 (606)
T 3t6q_A          157 VLDFQNNAIHYLSKEDMS  174 (606)
T ss_dssp             EEECCSSCCCEECHHHHH
T ss_pred             EEEcccCcccccChhhhh
Confidence            777777777744444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.94  E-value=1.8e-09  Score=117.30  Aligned_cols=101  Identities=19%  Similarity=0.147  Sum_probs=88.4

Q ss_pred             Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCcc
Q 042915          390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQ  467 (501)
Q Consensus       390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~  467 (501)
                      ...++.. ....+++|+.|+|++|.+++..|..|+++++|++|+|++|.+++.++. |+.+++|+.|+|++|.+.+..|.
T Consensus        86 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  165 (597)
T 3oja_B           86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD  165 (597)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence            3455543 456788999999999999998888899999999999999999987776 69999999999999999988888


Q ss_pred             ccCCCCCCCEEEccCCcCcccCCc
Q 042915          468 TLSQLPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~l~g~lP~  491 (501)
                      .|+.+++|+.|+|++|.|++ +|.
T Consensus       166 ~~~~l~~L~~L~L~~N~l~~-~~~  188 (597)
T 3oja_B          166 TFQATTSLQNLQLSSNRLTH-VDL  188 (597)
T ss_dssp             TTTTCTTCCEEECTTSCCSB-CCG
T ss_pred             hhhcCCcCcEEECcCCCCCC-cCh
Confidence            99999999999999999984 553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.94  E-value=1.3e-09  Score=117.52  Aligned_cols=94  Identities=23%  Similarity=0.219  Sum_probs=62.1

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      ++++.|+|++|++++..+..|.++++|++|+|++|++++..|+ |.++++|++|+|++|+++ .+|..  .+++|++|+|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            4567777777777766666777777777777777777766553 677777777777777776 55554  6677777777


Q ss_pred             cCCcCcc-cCCccCC-CCCC
Q 042915          481 QNNNLDG-QIPDGLW-KPGL  498 (501)
Q Consensus       481 s~N~l~g-~lP~~~~-~~~L  498 (501)
                      ++|++++ .+|..+. +++|
T Consensus       129 s~N~l~~l~~p~~~~~l~~L  148 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKL  148 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTC
T ss_pred             CCCCccccCchHhhcccCcc
Confidence            7777763 2334554 4444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.93  E-value=7e-10  Score=118.03  Aligned_cols=85  Identities=20%  Similarity=0.153  Sum_probs=45.9

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCc-cCccccCCCCCCCEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEG-WIPQTLSQLPILREI  478 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g-~~P~~~~~l~~L~~L  478 (501)
                      .+++|+.|+|++|++++..|..|.++++|++|+|++|+++. +|.. .+++|++|+|++|++++ .+|..++.+++|++|
T Consensus        43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L  120 (520)
T 2z7x_B           43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL  120 (520)
T ss_dssp             TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred             ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc-ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence            34455555555555555555555555555555555555553 2222 45555555555555554 345555555555555


Q ss_pred             EccCCcCc
Q 042915          479 FLQNNNLD  486 (501)
Q Consensus       479 ~Ls~N~l~  486 (501)
                      +|++|+++
T Consensus       121 ~L~~n~l~  128 (520)
T 2z7x_B          121 GLSTTHLE  128 (520)
T ss_dssp             EEEESSCC
T ss_pred             EecCcccc
Confidence            55555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.93  E-value=2.2e-09  Score=109.97  Aligned_cols=100  Identities=19%  Similarity=0.171  Sum_probs=87.2

Q ss_pred             Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCcc
Q 042915          390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQ  467 (501)
Q Consensus       390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~  467 (501)
                      ...++.. ....+++|+.|+|++|++++..|..+.++++|++|+|++|+++..++. +..+++|+.|+|++|++.+..|.
T Consensus        80 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~  159 (390)
T 3o6n_A           80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD  159 (390)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh
Confidence            3444543 356778999999999999988888899999999999999999977766 58999999999999999988888


Q ss_pred             ccCCCCCCCEEEccCCcCcccCC
Q 042915          468 TLSQLPILREIFLQNNNLDGQIP  490 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~l~g~lP  490 (501)
                      .++.+++|+.|+|++|+++ .++
T Consensus       160 ~~~~l~~L~~L~l~~n~l~-~~~  181 (390)
T 3o6n_A          160 TFQATTSLQNLQLSSNRLT-HVD  181 (390)
T ss_dssp             TTSSCTTCCEEECCSSCCS-BCC
T ss_pred             hccCCCCCCEEECCCCcCC-ccc
Confidence            8999999999999999998 455

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=1.7e-10  Score=130.45  Aligned_cols=109  Identities=20%  Similarity=0.253  Sum_probs=86.6

Q ss_pred             CCcceeeecCCCCeeEEEecCCCCcccc-----------------cCccccc--CCCCCCeeecCCCcCCCCCc-CCCCC
Q 042915          389 NSWTGVTCNKSKHTRVVSIDLKGFEISG-----------------TLPESIG--NLTALKHLRLGGNKLWGQIP-EMKTL  448 (501)
Q Consensus       389 ~~w~gv~c~~~~l~~l~~L~Ls~n~l~g-----------------~~p~~~~--~L~~L~~L~Ls~N~l~~~~p-~~~~l  448 (501)
                      +.+.+++....++++|+.|+|++|+|+|                 .+|+.++  +|++|+.|+|++|++.+.+| .++++
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence            4566677667778889999999999988                 3888877  89999999999999888888 47888


Q ss_pred             CCCCEEEccCCc-CCc-cCccccCCCC-------CCCEEEccCCcCcccCCc--cCC-CCCC
Q 042915          449 TALETLHLENNQ-FEG-WIPQTLSQLP-------ILREIFLQNNNLDGQIPD--GLW-KPGL  498 (501)
Q Consensus       449 ~~L~~L~Ls~N~-l~g-~~P~~~~~l~-------~L~~L~Ls~N~l~g~lP~--~~~-~~~L  498 (501)
                      ++|+.|+|++|+ ++| .+|..++.++       +|+.|+|++|.|+ .+|.  .+. +++|
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L  575 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKL  575 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCC
Confidence            889999999887 887 7777655544       8888888888888 7887  665 5544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.93  E-value=2.3e-09  Score=107.52  Aligned_cols=99  Identities=23%  Similarity=0.316  Sum_probs=71.6

Q ss_pred             CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCC
Q 042915          389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENN  459 (501)
Q Consensus       389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N  459 (501)
                      |.|..+.|....        .++++.|+|++|++++..|..+.++++|++|+|++|++++..| .+.++++|+.|+|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            567778776432        2367888888888887777788888888888888888887766 4788888888888888


Q ss_pred             cCCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915          460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~  491 (501)
                      ++. .+|..+.  ++|++|++++|+++ .+|.
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~  140 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIR-KVPK  140 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCC-CCCS
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccC-ccCH
Confidence            777 5555443  56666666666666 3443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.93  E-value=2.5e-10  Score=113.78  Aligned_cols=87  Identities=20%  Similarity=0.285  Sum_probs=68.7

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCC-----CCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCcc--Ccccc-
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNL-----TALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGW--IPQTL-  469 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~--~P~~~-  469 (501)
                      ..+++|+.|+|++|++++. |..+..+     ++|++|+|++|++++.++ .++.+++|+.|+|++|++.+.  +|..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            4567888888888888866 7777776     888888888888888775 478888888888888887765  34444 


Q ss_pred             -CCCCCCCEEEccCCcCc
Q 042915          470 -SQLPILREIFLQNNNLD  486 (501)
Q Consensus       470 -~~l~~L~~L~Ls~N~l~  486 (501)
                       +.+++|++|+|++|+|+
T Consensus       197 ~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             TTSCTTCCEEECTTSCCC
T ss_pred             hccCCCCCEEECCCCcCc
Confidence             78888888888888887

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.92  E-value=1.5e-09  Score=119.39  Aligned_cols=93  Identities=24%  Similarity=0.212  Sum_probs=75.1

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ++++|+.|+|++|++++..+..|.++++|++|+|++|++++.+| .++++++|++|+|++|.+++..|..++.+++|++|
T Consensus        71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            45678888888888886555678888888888888888887776 47888888888888888888888888888888888


Q ss_pred             EccCCcCcccCCcc
Q 042915          479 FLQNNNLDGQIPDG  492 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~  492 (501)
                      +|++|.+++..|..
T Consensus       151 ~L~~n~l~~~~~~~  164 (680)
T 1ziw_A          151 LLSNNKIQALKSEE  164 (680)
T ss_dssp             ECCSSCCCCBCHHH
T ss_pred             EccCCcccccCHHH
Confidence            88888888544443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.91  E-value=1.2e-09  Score=116.88  Aligned_cols=101  Identities=23%  Similarity=0.202  Sum_probs=76.7

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCC-C-cCCCCCCCCCEEEccCCcCCccCc-cccCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQ-I-PEMKTLTALETLHLENNQFEGWIP-QTLSQLPI  474 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~-~-p~~~~l~~L~~L~Ls~N~l~g~~P-~~~~~l~~  474 (501)
                      ...+++|+.|+|++|++++..|..++++++|++|+|++|++++. . +.++++++|+.|+|++|.+.+.+| ..+..+++
T Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  149 (549)
T 2z81_A           70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS  149 (549)
T ss_dssp             TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence            45667888888888888877777788888888888888888753 3 357888888888888888544555 57888888


Q ss_pred             CCEEEccCCcCcccCCccCC-CCCC
Q 042915          475 LREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       475 L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      |++|+|++|.+++.+|..+. +++|
T Consensus       150 L~~L~L~~n~l~~~~~~~l~~l~~L  174 (549)
T 2z81_A          150 LNELEIKALSLRNYQSQSLKSIRDI  174 (549)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             cCeeeccCCcccccChhhhhccccC
Confidence            88888888888877777776 4433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.91  E-value=1.4e-09  Score=115.36  Aligned_cols=96  Identities=26%  Similarity=0.255  Sum_probs=69.7

Q ss_pred             CCeeEEEecCCCCcccccCccccc-CCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIG-NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      .+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. +....+++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L  219 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI  219 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence            456788888888888877777665 678888888888887766 444457788888888888875 44447777888888


Q ss_pred             EccCCcCcccCCccCC-CCCC
Q 042915          479 FLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      +|++|.|+ .+|..+. ++.|
T Consensus       220 ~Ls~N~l~-~lp~~l~~l~~L  239 (487)
T 3oja_A          220 SLRNNKLV-LIEKALRFSQNL  239 (487)
T ss_dssp             ECTTSCCC-EECTTCCCCTTC
T ss_pred             EecCCcCc-ccchhhccCCCC
Confidence            88888887 4777665 4443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.90  E-value=2.9e-09  Score=106.58  Aligned_cols=95  Identities=25%  Similarity=0.344  Sum_probs=70.4

Q ss_pred             CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCC
Q 042915          389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENN  459 (501)
Q Consensus       389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N  459 (501)
                      |.|+.+.|....        .++++.|+|++|++++..+..|.++++|++|+|++|++++..| .+..+++|+.|+|++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            568888886432        2367889999999987777788889999999999999988866 4788888888888888


Q ss_pred             cCCccCccccCCCCCCCEEEccCCcCc
Q 042915          460 QFEGWIPQTLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~  486 (501)
                      +++ .+|..+.  ++|+.|++++|+++
T Consensus       111 ~l~-~l~~~~~--~~L~~L~l~~n~l~  134 (330)
T 1xku_A          111 QLK-ELPEKMP--KTLQELRVHENEIT  134 (330)
T ss_dssp             CCS-BCCSSCC--TTCCEEECCSSCCC
T ss_pred             cCC-ccChhhc--ccccEEECCCCccc
Confidence            877 5555433  45555555555555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.90  E-value=2e-09  Score=118.32  Aligned_cols=100  Identities=24%  Similarity=0.188  Sum_probs=78.2

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      .++++|+.|+|++|.+++..|..+.++++|++|+|++|++++.++. |+++++|++|+|++|++.+..|..|+.+++|++
T Consensus        46 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  125 (680)
T 1ziw_A           46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT  125 (680)
T ss_dssp             GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCE
T ss_pred             hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCE
Confidence            3456778888888888877777788888888888888888876663 788888888888888888766678888888888


Q ss_pred             EEccCCcCcccCCccCC-CCCC
Q 042915          478 IFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       478 L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      |+|++|.+++..|..+. +++|
T Consensus       126 L~Ls~n~l~~~~~~~~~~l~~L  147 (680)
T 1ziw_A          126 LDLSHNGLSSTKLGTQVQLENL  147 (680)
T ss_dssp             EECCSSCCSCCCCCSSSCCTTC
T ss_pred             EECCCCcccccCchhhcccccC
Confidence            88888888866666665 5544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.90  E-value=1.9e-09  Score=109.11  Aligned_cols=109  Identities=20%  Similarity=0.178  Sum_probs=85.0

Q ss_pred             Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc--CCCCCCCCCEEEccCC-cCCccC
Q 042915          390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTALETLHLENN-QFEGWI  465 (501)
Q Consensus       390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~Ls~N-~l~g~~  465 (501)
                      ...++.. ....+++|+.|+|++|++++..+..+.++++|++|+|++|++++..+  .+..+++|+.|+|++| .+.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~  166 (353)
T 2z80_A           87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ  166 (353)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence            3444443 24567788999999999986555558889999999999999987665  4788999999999998 466566


Q ss_pred             ccccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915          466 PQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       466 P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      |..++.+++|+.|++++|.+++..|..+. +++|
T Consensus       167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV  200 (353)
T ss_dssp             TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             HHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence            77888899999999999999877677776 5444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.89  E-value=2.1e-09  Score=107.33  Aligned_cols=91  Identities=26%  Similarity=0.263  Sum_probs=51.0

Q ss_pred             CeeEEEecCCCCcccccCcccc-cCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESI-GNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~-~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++. +....+++|+.|+|++|++++ +|..+..+++|+.|+
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~  220 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS  220 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred             cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence            4456666666666665544444 3456666666666666544 333345666666666666653 333455566666666


Q ss_pred             ccCCcCcccCCccCC
Q 042915          480 LQNNNLDGQIPDGLW  494 (501)
Q Consensus       480 Ls~N~l~g~lP~~~~  494 (501)
                      |++|+|+ .+|..+.
T Consensus       221 L~~N~l~-~l~~~~~  234 (317)
T 3o53_A          221 LRNNKLV-LIEKALR  234 (317)
T ss_dssp             CTTSCCC-EECTTCC
T ss_pred             CcCCccc-chhhHhh
Confidence            6666665 4555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.88  E-value=1.1e-09  Score=101.69  Aligned_cols=96  Identities=21%  Similarity=0.308  Sum_probs=80.5

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ..+++|+.|++++|.++  .++.+..+++|++|++++|++++..+ .+..+++|+.|+|++|++++..|..++.+++|++
T Consensus        63 ~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  140 (197)
T 4ezg_A           63 EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS  140 (197)
T ss_dssp             GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred             hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence            34568999999999775  33478999999999999999998544 6899999999999999999888999999999999


Q ss_pred             EEccCCc-CcccCCccCC-CCCC
Q 042915          478 IFLQNNN-LDGQIPDGLW-KPGL  498 (501)
Q Consensus       478 L~Ls~N~-l~g~lP~~~~-~~~L  498 (501)
                      |+|++|+ ++ .+| .+. +++|
T Consensus       141 L~L~~n~~i~-~~~-~l~~l~~L  161 (197)
T 4ezg_A          141 IDLSYNGAIT-DIM-PLKTLPEL  161 (197)
T ss_dssp             EECCSCTBCC-CCG-GGGGCSSC
T ss_pred             EEccCCCCcc-ccH-hhcCCCCC
Confidence            9999998 65 777 344 5544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.88  E-value=3.9e-09  Score=114.71  Aligned_cols=94  Identities=19%  Similarity=0.156  Sum_probs=74.5

Q ss_pred             Ccceeeec-CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCcc
Q 042915          390 SWTGVTCN-KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQ  467 (501)
Q Consensus       390 ~w~gv~c~-~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~  467 (501)
                      ...++... .+.+++|+.|+|++|.|++..+..|.++++|+.|+|++|.+++.+|. +..+++|+.|+|++|.+.+..  
T Consensus       110 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--  187 (597)
T 3oja_B          110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--  187 (597)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred             cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--
Confidence            34444433 36778999999999999966666679999999999999999998884 899999999999999998643  


Q ss_pred             ccCCCCCCCEEEccCCcCc
Q 042915          468 TLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~l~  486 (501)
                       ++.+++|+.|++++|.++
T Consensus       188 -~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          188 -LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             -GGGCTTCSEEECCSSCCS
T ss_pred             -hhhhhhhhhhhcccCccc
Confidence             445566777777666665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.88  E-value=4.4e-09  Score=110.16  Aligned_cols=93  Identities=16%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCcc-ccCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQ-TLSQLPIL  475 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~-~~~~l~~L  475 (501)
                      ..++++|+.|+|++|+|++..+..|.++++|++|+|++|+++...+ .+.++++|+.|+|++|+..+.+|. .|..+++|
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  198 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL  198 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence            4456777888888888876666667778888888888888876665 367788888888887443334443 57788888


Q ss_pred             CEEEccCCcCcccCCc
Q 042915          476 REIFLQNNNLDGQIPD  491 (501)
Q Consensus       476 ~~L~Ls~N~l~g~lP~  491 (501)
                      +.|+|++|+|+ .+|.
T Consensus       199 ~~L~L~~n~l~-~~~~  213 (452)
T 3zyi_A          199 KYLNLGMCNIK-DMPN  213 (452)
T ss_dssp             CEEECTTSCCS-SCCC
T ss_pred             CEEECCCCccc-cccc
Confidence            88888888888 5664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.87  E-value=4.9e-09  Score=109.46  Aligned_cols=93  Identities=20%  Similarity=0.231  Sum_probs=66.5

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCc-cccCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIP-QTLSQLPIL  475 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P-~~~~~l~~L  475 (501)
                      ..++++|+.|+|++|+|++..+..|..+++|+.|+|++|+++...+ .+..+++|+.|+|++|+..+.++ ..|.++++|
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  187 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL  187 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence            3456677777777777776656667777777788887777776665 36777778888887744333444 367788888


Q ss_pred             CEEEccCCcCcccCCc
Q 042915          476 REIFLQNNNLDGQIPD  491 (501)
Q Consensus       476 ~~L~Ls~N~l~g~lP~  491 (501)
                      +.|+|++|+|+ .+|.
T Consensus       188 ~~L~L~~n~l~-~~~~  202 (440)
T 3zyj_A          188 RYLNLAMCNLR-EIPN  202 (440)
T ss_dssp             CEEECTTSCCS-SCCC
T ss_pred             CeecCCCCcCc-cccc
Confidence            88888888887 6774

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.87  E-value=1.6e-09  Score=109.85  Aligned_cols=105  Identities=16%  Similarity=0.242  Sum_probs=87.9

Q ss_pred             CCCcceeeecCCCC--------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc--CCCCCCCCCE-EEc
Q 042915          388 ENSWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTALET-LHL  456 (501)
Q Consensus       388 ~~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~-L~L  456 (501)
                      .|.+..|.|...++        .++++|+|++|+|+...+..|.+|++|++|+|++|++.+.+|  .|.++++|+. +.+
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            36788899975433        368999999999997666789999999999999999987766  3789988875 667


Q ss_pred             cCCcCCccCccccCCCCCCCEEEccCCcCcccCCccC
Q 042915          457 ENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL  493 (501)
Q Consensus       457 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~  493 (501)
                      +.|++.+..|..|..+++|+.|++++|+|+ .+|...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~  123 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVH  123 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCT
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchh
Confidence            789999888889999999999999999998 566543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.87  E-value=5.7e-09  Score=106.92  Aligned_cols=93  Identities=19%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             cceeeec-CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccc
Q 042915          391 WTGVTCN-KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQT  468 (501)
Q Consensus       391 w~gv~c~-~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~  468 (501)
                      ..++... ...+++|+.|+|++|+++...+..+.++++|++|++++|++++..+. +..+++|+.|+|++|++++.   .
T Consensus       105 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~  181 (390)
T 3o6n_A          105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D  181 (390)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---C
T ss_pred             CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---c
Confidence            4444332 45678999999999999955555579999999999999999988775 89999999999999999854   2


Q ss_pred             cCCCCCCCEEEccCCcCc
Q 042915          469 LSQLPILREIFLQNNNLD  486 (501)
Q Consensus       469 ~~~l~~L~~L~Ls~N~l~  486 (501)
                      ++.+++|+.|++++|.++
T Consensus       182 ~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          182 LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             GGGCTTCSEEECCSSCCS
T ss_pred             cccccccceeeccccccc
Confidence            455677777777777776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.85  E-value=3.3e-09  Score=113.82  Aligned_cols=93  Identities=23%  Similarity=0.369  Sum_probs=63.0

Q ss_pred             CCCeeEEEecCCCCccc-ccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          399 SKHTRVVSIDLKGFEIS-GTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ..+++|+.|+|++|.+. +.+|..+..+++|+.|+|++|++++..| .+..+++|+.|+|++|++++..|..+..+++|+
T Consensus       442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            34556677777777765 4566667777777777777777776655 366677777777777777766666667777777


Q ss_pred             EEEccCCcCcccCCc
Q 042915          477 EIFLQNNNLDGQIPD  491 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~  491 (501)
                      .|++++|++++..|.
T Consensus       522 ~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          522 KIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EEECCSSCBCCCTTT
T ss_pred             EEEecCCcccCCCcc
Confidence            777777777666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.85  E-value=4.6e-09  Score=105.12  Aligned_cols=88  Identities=25%  Similarity=0.373  Sum_probs=54.3

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      ++|+.|+|++|++++..+..+.++++|+.|+|++|++++..+ .+..+++|+.|+|++|+++ .+|..+..+++|+.|+|
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  270 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence            355566666666665556666666666666666666665555 3566666666666666666 55666666666666666


Q ss_pred             cCCcCcccCCc
Q 042915          481 QNNNLDGQIPD  491 (501)
Q Consensus       481 s~N~l~g~lP~  491 (501)
                      ++|+|+ .+|.
T Consensus       271 ~~N~i~-~~~~  280 (330)
T 1xku_A          271 HNNNIS-AIGS  280 (330)
T ss_dssp             CSSCCC-CCCT
T ss_pred             CCCcCC-ccCh
Confidence            666666 3443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.84  E-value=2.5e-09  Score=101.98  Aligned_cols=102  Identities=15%  Similarity=0.210  Sum_probs=83.1

Q ss_pred             cceeee-cCCCCeeEEEecCCC-CcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCC---EEEccCC-cCCcc
Q 042915          391 WTGVTC-NKSKHTRVVSIDLKG-FEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALE---TLHLENN-QFEGW  464 (501)
Q Consensus       391 w~gv~c-~~~~l~~l~~L~Ls~-n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~---~L~Ls~N-~l~g~  464 (501)
                      ...+.. ....+++|+.|+|++ |++++..+..|.++++|+.|++++|++++ +|.+..+++|+   .|+|++| ++++.
T Consensus        68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i  146 (239)
T 2xwt_C           68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSI  146 (239)
T ss_dssp             CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred             cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhc
Confidence            344443 234567889999998 99987777888999999999999999987 55588888888   9999999 88866


Q ss_pred             CccccCCCCCCC-EEEccCCcCcccCCccCC
Q 042915          465 IPQTLSQLPILR-EIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       465 ~P~~~~~l~~L~-~L~Ls~N~l~g~lP~~~~  494 (501)
                      .+..|..+++|+ .|+|++|+++ .+|...+
T Consensus       147 ~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~  176 (239)
T 2xwt_C          147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAF  176 (239)
T ss_dssp             CTTTTTTTBSSEEEEECCSCCCC-EECTTTT
T ss_pred             CcccccchhcceeEEEcCCCCCc-ccCHhhc
Confidence            666789999999 9999999998 7887655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.82  E-value=3.4e-09  Score=112.47  Aligned_cols=105  Identities=20%  Similarity=0.158  Sum_probs=88.3

Q ss_pred             CCcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCC-CCCCCCEEEccCCcCCccCc
Q 042915          389 NSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMK-TLTALETLHLENNQFEGWIP  466 (501)
Q Consensus       389 ~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~-~l~~L~~L~Ls~N~l~g~~P  466 (501)
                      |.+.++.|.  .+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++.+| .+. .+++|+.|+|++|.+++. |
T Consensus       109 N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~  185 (487)
T 3oja_A          109 NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K  185 (487)
T ss_dssp             SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred             CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence            356677775  35789999999999999989999999999999999999999877 454 899999999999999965 3


Q ss_pred             cccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915          467 QTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       467 ~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      . +..+++|+.|+|++|.|++ +|+.+. ++.|
T Consensus       186 ~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L  216 (487)
T 3oja_A          186 G-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV  216 (487)
T ss_dssp             C-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred             c-cccCCCCCEEECCCCCCCC-CCHhHcCCCCc
Confidence            3 4468999999999999995 776665 5544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.82  E-value=6.7e-09  Score=102.55  Aligned_cols=86  Identities=24%  Similarity=0.300  Sum_probs=59.8

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      .+++|+.|+|++|++++.  +.+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.+++ +|. +..+++|+.|+
T Consensus       132 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~  206 (291)
T 1h6t_A          132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLE  206 (291)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEE
T ss_pred             CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEE
Confidence            455677777777777654  457777777777777777776555 7777777777777777763 443 67777777777


Q ss_pred             ccCCcCcccCCc
Q 042915          480 LQNNNLDGQIPD  491 (501)
Q Consensus       480 Ls~N~l~g~lP~  491 (501)
                      |++|+++ ..|.
T Consensus       207 l~~n~i~-~~~~  217 (291)
T 1h6t_A          207 LFSQECL-NKPI  217 (291)
T ss_dssp             EEEEEEE-CCCE
T ss_pred             CcCCccc-CCcc
Confidence            7777776 3443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.79  E-value=6.7e-09  Score=111.82  Aligned_cols=87  Identities=17%  Similarity=0.080  Sum_probs=63.7

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCc-cCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEG-WIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g-~~P~~~~~l~~L~~  477 (501)
                      ..+++|+.|+|++|++++..|..|.++++|++|+|++|+++..++.  .+++|+.|+|++|++++ .+|..++++++|++
T Consensus        73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~  150 (562)
T 3a79_B           73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF  150 (562)
T ss_dssp             TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred             ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence            4556777788888887777777777778888888888877744333  67778888888887775 34567777777888


Q ss_pred             EEccCCcCcc
Q 042915          478 IFLQNNNLDG  487 (501)
Q Consensus       478 L~Ls~N~l~g  487 (501)
                      |+|++|++++
T Consensus       151 L~L~~n~l~~  160 (562)
T 3a79_B          151 LGLSAAKFRQ  160 (562)
T ss_dssp             EEEECSBCCT
T ss_pred             EecCCCcccc
Confidence            8877777763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.79  E-value=5.8e-09  Score=118.00  Aligned_cols=94  Identities=23%  Similarity=0.224  Sum_probs=58.7

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-C--CCCCCCCCEEEccCCcCCccCc-cccCCCCCC
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-E--MKTLTALETLHLENNQFEGWIP-QTLSQLPIL  475 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~--~~~l~~L~~L~Ls~N~l~g~~P-~~~~~l~~L  475 (501)
                      ++++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++.++ .  +.++++|+.|+|++|.+.+..| ..|+++++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            44566666666666666666666666666666666666666443 2  5666666666666666665443 356666666


Q ss_pred             CEEEccCCcCcccCCccC
Q 042915          476 REIFLQNNNLDGQIPDGL  493 (501)
Q Consensus       476 ~~L~Ls~N~l~g~lP~~~  493 (501)
                      ++|+|++|.+++..|..+
T Consensus       151 ~~L~Ls~N~i~~~~~~~l  168 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHEL  168 (844)
T ss_dssp             CEEEEESSCCCCCCSGGG
T ss_pred             CEEECCCCcCCeeCHHHc
Confidence            666666666665444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.79  E-value=1.9e-09  Score=107.16  Aligned_cols=87  Identities=22%  Similarity=0.282  Sum_probs=61.1

Q ss_pred             CCeeEEEecCCCCcccccCcc----cccCCCCCCeeecCCCcCCCCCc-CCCCC---CCCCEEEccCCcCCccCccccCC
Q 042915          400 KHTRVVSIDLKGFEISGTLPE----SIGNLTALKHLRLGGNKLWGQIP-EMKTL---TALETLHLENNQFEGWIPQTLSQ  471 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~----~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l---~~L~~L~Ls~N~l~g~~P~~~~~  471 (501)
                      .+++|+.|+|++|+++. ++.    .+..+++|++|+|++|++++..| .+..+   ++|+.|+|++|+++ .+|..+. 
T Consensus       195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-  271 (310)
T 4glp_A          195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-  271 (310)
T ss_dssp             SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred             cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence            45677777888877752 222    24677888888888888887754 44444   68888888888887 6677664 


Q ss_pred             CCCCCEEEccCCcCcccCCc
Q 042915          472 LPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       472 l~~L~~L~Ls~N~l~g~lP~  491 (501)
                       ++|+.|+|++|+|++ +|.
T Consensus       272 -~~L~~L~Ls~N~l~~-~~~  289 (310)
T 4glp_A          272 -AKLRVLDLSSNRLNR-APQ  289 (310)
T ss_dssp             -SCCSCEECCSCCCCS-CCC
T ss_pred             -CCCCEEECCCCcCCC-Cch
Confidence             678888888888874 443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.78  E-value=2e-08  Score=100.54  Aligned_cols=83  Identities=20%  Similarity=0.232  Sum_probs=39.7

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      +++|+.|+|++|++++..|..+.++++|++|+|++|+++..++.+.  ++|+.|+|++|++.+..+..+..+++|+.|++
T Consensus        77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  154 (332)
T 2ft3_A           77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM  154 (332)
T ss_dssp             CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred             CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence            3445555555555554445555555555555555555543322222  44455555555544333334444444555555


Q ss_pred             cCCcC
Q 042915          481 QNNNL  485 (501)
Q Consensus       481 s~N~l  485 (501)
                      ++|.+
T Consensus       155 ~~n~l  159 (332)
T 2ft3_A          155 GGNPL  159 (332)
T ss_dssp             CSCCC
T ss_pred             CCCcc
Confidence            44444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.78  E-value=1.1e-08  Score=101.69  Aligned_cols=88  Identities=23%  Similarity=0.352  Sum_probs=73.6

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ...+++|+.|+|++|++++ ++. +..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++ ++. +..+++|+.
T Consensus       103 ~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~  177 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT  177 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred             hcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence            4457789999999999986 343 8899999999999999987654 8889999999999999985 444 889999999


Q ss_pred             EEccCCcCcccCCc
Q 042915          478 IFLQNNNLDGQIPD  491 (501)
Q Consensus       478 L~Ls~N~l~g~lP~  491 (501)
                      |+|++|+++ .+|.
T Consensus       178 L~l~~n~l~-~~~~  190 (308)
T 1h6u_A          178 LKADDNKIS-DISP  190 (308)
T ss_dssp             EECCSSCCC-CCGG
T ss_pred             EECCCCccC-cChh
Confidence            999999998 5664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.77  E-value=5.2e-09  Score=111.29  Aligned_cols=97  Identities=18%  Similarity=0.236  Sum_probs=69.1

Q ss_pred             CCCeeEEEecCCCCcccc--cCcccccCCCCCCeeecCCCcCCCCCc-C-CCCCCCCCEEEccCCcCCccCccccCCCCC
Q 042915          399 SKHTRVVSIDLKGFEISG--TLPESIGNLTALKHLRLGGNKLWGQIP-E-MKTLTALETLHLENNQFEGWIPQTLSQLPI  474 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~  474 (501)
                      ..+++|+.|+|++|++++  .+|..+..+++|+.|++++|++++.+| . +..+++|+.|+|++|++++.+|..+.  ++
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~  422 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR  422 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred             ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence            445677777777777775  455667777777777777777777444 2 57777777888887777777766654  67


Q ss_pred             CCEEEccCCcCcccCCccCC-CCCC
Q 042915          475 LREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       475 L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      |+.|+|++|+|+ .+|..++ +++|
T Consensus       423 L~~L~Ls~N~l~-~ip~~~~~l~~L  446 (520)
T 2z7x_B          423 IKVLDLHSNKIK-SIPKQVVKLEAL  446 (520)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred             CCEEECCCCccc-ccchhhhcCCCC
Confidence            888888888887 7887665 4444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.77  E-value=1.1e-08  Score=100.93  Aligned_cols=95  Identities=29%  Similarity=0.444  Sum_probs=79.9

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ...+++|+.|+|++|++++.  +.+..+++|+.|++++|++++. +.+..+++|+.|+|++|++++..|  +..+++|+.
T Consensus       108 l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  182 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  182 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence            45678899999999999864  4688999999999999999876 778999999999999999996544  899999999


Q ss_pred             EEccCCcCcccCCccCC-CCCCc
Q 042915          478 IFLQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       478 L~Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                      |+|++|+|+ .+|. +. +++|+
T Consensus       183 L~L~~N~i~-~l~~-l~~l~~L~  203 (291)
T 1h6t_A          183 LYLSKNHIS-DLRA-LAGLKNLD  203 (291)
T ss_dssp             EECCSSCCC-BCGG-GTTCTTCS
T ss_pred             EECCCCcCC-CChh-hccCCCCC
Confidence            999999998 5765 44 55543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.76  E-value=1.1e-08  Score=101.78  Aligned_cols=88  Identities=24%  Similarity=0.302  Sum_probs=60.8

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      .+++|+.|+|++|++++. +. +..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++..  .+..+++|+.|+
T Consensus       149 ~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~  223 (308)
T 1h6u_A          149 GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVT  223 (308)
T ss_dssp             GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEE
T ss_pred             CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEE
Confidence            456677777777777743 33 7777777777777777775443 677777777777777777443  267777777777


Q ss_pred             ccCCcCcccCCccC
Q 042915          480 LQNNNLDGQIPDGL  493 (501)
Q Consensus       480 Ls~N~l~g~lP~~~  493 (501)
                      |++|+++ ..|..+
T Consensus       224 l~~N~i~-~~~~~~  236 (308)
T 1h6u_A          224 LTNQTIT-NQPVFY  236 (308)
T ss_dssp             EEEEEEE-CCCEEC
T ss_pred             ccCCeee-cCCeee
Confidence            7777776 455433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.75  E-value=1.5e-08  Score=98.61  Aligned_cols=93  Identities=23%  Similarity=0.291  Sum_probs=65.6

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ...+++|+.|+|++|++++ +|.. .. ++|+.|+|++|++++. +.+..+++|+.|+|++|++++ +| .++.+++|+.
T Consensus        81 l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~  154 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEV  154 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCE
T ss_pred             hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCE
Confidence            4456777788888887774 3332 22 7788888888887763 567788888888888888875 44 5778888888


Q ss_pred             EEccCCcCcccCCccCC-CCCC
Q 042915          478 IFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       478 L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      |+|++|++++ + ..+. +++|
T Consensus       155 L~L~~N~i~~-~-~~l~~l~~L  174 (263)
T 1xeu_A          155 LDLHGNEITN-T-GGLTRLKKV  174 (263)
T ss_dssp             EECTTSCCCB-C-TTSTTCCCC
T ss_pred             EECCCCcCcc-h-HHhccCCCC
Confidence            8888888884 4 3444 4444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.74  E-value=3.9e-09  Score=105.10  Aligned_cols=104  Identities=18%  Similarity=0.191  Sum_probs=83.6

Q ss_pred             Ccceeee-cCCCCeeEEEecCCCCccccc--Ccccc--cCCCCCCeeecCCCcCCCCC--c-C-CCCCCCCCEEEccCCc
Q 042915          390 SWTGVTC-NKSKHTRVVSIDLKGFEISGT--LPESI--GNLTALKHLRLGGNKLWGQI--P-E-MKTLTALETLHLENNQ  460 (501)
Q Consensus       390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~--~p~~~--~~L~~L~~L~Ls~N~l~~~~--p-~-~~~l~~L~~L~Ls~N~  460 (501)
                      ...++.+ ....+++|+.|+|++|++.+.  ++..+  .++++|++|+|++|++++..  + . +..+++|+.|+|++|+
T Consensus       160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            3444553 345678999999999998765  34444  89999999999999998532  2 2 3688999999999999


Q ss_pred             CCccCc-cccCCCCCCCEEEccCCcCcccCCccCC
Q 042915          461 FEGWIP-QTLSQLPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       461 l~g~~P-~~~~~l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      +++..| ..+..+++|+.|+|++|+|+ .+|..+.
T Consensus       240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             CCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             CCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence            998775 45677899999999999999 8998776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.74  E-value=7.6e-09  Score=102.79  Aligned_cols=92  Identities=15%  Similarity=0.150  Sum_probs=69.2

Q ss_pred             CCCeeEEEecCCCCcccccCc----ccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCcc--Cc--ccc
Q 042915          399 SKHTRVVSIDLKGFEISGTLP----ESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGW--IP--QTL  469 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p----~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~--~P--~~~  469 (501)
                      ..+++|+.|+|++|.+.+..+    ..+..+++|++|+|++|++.+.++ .++.+++|++|+|++|++.+.  ++  ..+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            456788888888888886554    334578888888888888887776 478888888888888887652  22  234


Q ss_pred             CCCCCCCEEEccCCcCcccCCc
Q 042915          470 SQLPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       470 ~~l~~L~~L~Ls~N~l~g~lP~  491 (501)
                      +.+++|++|+|++|+++ .+|.
T Consensus       194 ~~l~~L~~L~Ls~N~l~-~l~~  214 (310)
T 4glp_A          194 HKFPAIQNLALRNTGME-TPTG  214 (310)
T ss_dssp             TSSCCCCSCBCCSSCCC-CHHH
T ss_pred             hcCCCCCEEECCCCCCC-chHH
Confidence            67888888888888887 4443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.73  E-value=1.1e-08  Score=102.15  Aligned_cols=104  Identities=18%  Similarity=0.144  Sum_probs=85.6

Q ss_pred             CcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-C-CCCCCCCEEEccCCcCCccCcc
Q 042915          390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-M-KTLTALETLHLENNQFEGWIPQ  467 (501)
Q Consensus       390 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~-~~l~~L~~L~Ls~N~l~g~~P~  467 (501)
                      ...++.+..  +++|+.|++++|++++..+..+..+++|+.|+|++|++++..+. + ..+++|+.|+|++|++++. |.
T Consensus       110 ~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~  186 (317)
T 3o53_A          110 NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG  186 (317)
T ss_dssp             CCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred             ccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc
Confidence            445555542  56899999999999988888999999999999999999987664 5 5799999999999999854 43


Q ss_pred             ccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915          468 TLSQLPILREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                       ...+++|+.|+|++|+|+ .+|..+. +++|
T Consensus       187 -~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L  216 (317)
T 3o53_A          187 -QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGV  216 (317)
T ss_dssp             -CCCCTTCCEEECCSSCCC-EECGGGGGGTTC
T ss_pred             -ccccccCCEEECCCCcCC-cchhhhcccCcc
Confidence             445899999999999999 5777765 5544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.73  E-value=9.9e-09  Score=103.15  Aligned_cols=90  Identities=24%  Similarity=0.384  Sum_probs=74.0

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ...+++|+.|++++|.+++.  +.+..+++|+.|++++|++++. +.+..+++|+.|+|++|++.+..|..++.+++|+.
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            34567888899999988753  4588889999999999988865 66788899999999999998888888888999999


Q ss_pred             EEccCCcCcccCC
Q 042915          478 IFLQNNNLDGQIP  490 (501)
Q Consensus       478 L~Ls~N~l~g~lP  490 (501)
                      |+|++|++++..|
T Consensus       316 L~L~~n~l~~~~~  328 (347)
T 4fmz_A          316 LFLSQNHITDIRP  328 (347)
T ss_dssp             EECCSSSCCCCGG
T ss_pred             EEccCCccccccC
Confidence            9999999985434

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.72  E-value=2.5e-08  Score=96.98  Aligned_cols=85  Identities=25%  Similarity=0.218  Sum_probs=75.0

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      .+|+.|+|++|++++. + .+..+++|+.|+|++|++++. +.+..+++|+.|+|++|++++.  ..+..+++|+.|+|+
T Consensus       106 ~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          106 ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred             CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence            6899999999999863 4 589999999999999999875 5788999999999999999965  678999999999999


Q ss_pred             CCcCcccCCcc
Q 042915          482 NNNLDGQIPDG  492 (501)
Q Consensus       482 ~N~l~g~lP~~  492 (501)
                      +|+++ ..|..
T Consensus       181 ~N~~~-~~~~~  190 (263)
T 1xeu_A          181 GQKCV-NEPVK  190 (263)
T ss_dssp             EEEEE-CCCEE
T ss_pred             CCccc-CCccc
Confidence            99998 45644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.72  E-value=2e-08  Score=109.34  Aligned_cols=86  Identities=24%  Similarity=0.312  Sum_probs=67.3

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ..+++|+.|+|++|.|++.  ..+..|++|+.|+|++|++.+.+| +..+++|+.|+|++|+|++ +| .+..+++|+.|
T Consensus       128 ~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L  202 (605)
T 1m9s_A          128 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVL  202 (605)
T ss_dssp             GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEE
T ss_pred             cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEE
Confidence            3456788888888888754  567888888888888888887766 7888888888888888875 33 57888888888


Q ss_pred             EccCCcCcccCC
Q 042915          479 FLQNNNLDGQIP  490 (501)
Q Consensus       479 ~Ls~N~l~g~lP  490 (501)
                      +|++|++++ .|
T Consensus       203 ~L~~N~l~~-~p  213 (605)
T 1m9s_A          203 ELFSQECLN-KP  213 (605)
T ss_dssp             ECCSEEEEC-CC
T ss_pred             EccCCcCcC-Cc
Confidence            888888873 44

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.69  E-value=2e-08  Score=109.45  Aligned_cols=95  Identities=29%  Similarity=0.456  Sum_probs=80.8

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ...+++|+.|+|++|.|.+ + +.+..|++|+.|+|++|++++. +.+..|++|+.|+|++|++.+..|  +..+++|+.
T Consensus       105 l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~  179 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  179 (605)
T ss_dssp             STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence            4567889999999999986 3 4589999999999999999976 778999999999999999997666  999999999


Q ss_pred             EEccCCcCcccCCccCC-CCCCc
Q 042915          478 IFLQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       478 L~Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                      |+|++|+|+ .+|. +. +++|+
T Consensus       180 L~Ls~N~i~-~l~~-l~~l~~L~  200 (605)
T 1m9s_A          180 LYLSKNHIS-DLRA-LAGLKNLD  200 (605)
T ss_dssp             EECCSSCCC-BCGG-GTTCTTCS
T ss_pred             EECcCCCCC-CChH-HccCCCCC
Confidence            999999999 4653 44 55543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.61  E-value=4.9e-08  Score=102.61  Aligned_cols=88  Identities=24%  Similarity=0.295  Sum_probs=71.2

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ..+++|+.|+|++|++++..|  +..+++|+.|++++|++++. +.+..+++|+.|+|++|++++..|  +..+++|+.|
T Consensus       306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  380 (466)
T 1o6v_A          306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL  380 (466)
T ss_dssp             GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred             cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence            345678888888888886655  77888888888888888875 667888899999999999887766  7888899999


Q ss_pred             EccCCcCcccCCcc
Q 042915          479 FLQNNNLDGQIPDG  492 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~  492 (501)
                      ++++|++++ +|..
T Consensus       381 ~l~~n~~~~-~p~~  393 (466)
T 1o6v_A          381 GLNDQAWTN-APVN  393 (466)
T ss_dssp             ECCCEEEEC-CCBC
T ss_pred             eccCCcccC-Cchh
Confidence            999998884 5544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.57  E-value=2.8e-08  Score=107.29  Aligned_cols=87  Identities=21%  Similarity=0.268  Sum_probs=72.0

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCC-------CEEEccCCcCCccCccccCCC
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTAL-------ETLHLENNQFEGWIPQTLSQL  472 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L-------~~L~Ls~N~l~g~~P~~~~~l  472 (501)
                      .+++|+.|+|++|+|++ +|. +.  ++|+.|+|++|+|+..++ +..  +|       +.|+|++|+|+ .+|..+..+
T Consensus       158 ~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l  229 (571)
T 3cvr_A          158 LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL  229 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred             cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence            35689999999999996 676 66  899999999999995544 543  66       99999999999 689988889


Q ss_pred             CCCCEEEccCCcCcccCCccCC
Q 042915          473 PILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       473 ~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      ++|+.|+|++|+|++.+|..+.
T Consensus       230 ~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          230 DPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             CTTEEEECCSSSCCHHHHHHHH
T ss_pred             CCCCEEEeeCCcCCCcCHHHHH
Confidence            9999999999999988887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.56  E-value=4.5e-08  Score=98.30  Aligned_cols=95  Identities=29%  Similarity=0.436  Sum_probs=79.2

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ..+++|+.|++++|++++..+  +..+++|+.|++++|++++. +.+..+++|+.|+|++|++++ + ..+..+++|+.|
T Consensus       218 ~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L  292 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL  292 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence            345689999999999985444  89999999999999999864 678899999999999999985 4 458899999999


Q ss_pred             EccCCcCcccCCccCC-CCCC
Q 042915          479 FLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      +|++|++++..|..+. +++|
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTC
T ss_pred             ECcCCcCCCcChhHhhccccC
Confidence            9999999876666555 5544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.55  E-value=1e-07  Score=102.88  Aligned_cols=88  Identities=20%  Similarity=0.207  Sum_probs=71.9

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCC----
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPIL----  475 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L----  475 (501)
                      .+++|+.|+|++|+|++ +|.   .+++|+.|+|++|+|++.++ +.  ++|+.|+|++|+|+ .+|. +..  +|    
T Consensus       138 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~  206 (571)
T 3cvr_A          138 LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSE  206 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC---------
T ss_pred             cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccc
Confidence            35689999999999996 665   67899999999999998444 65  89999999999999 7887 654  77    


Q ss_pred             ---CEEEccCCcCcccCCccCC-CCCCc
Q 042915          476 ---REIFLQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       476 ---~~L~Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                         +.|+|++|+|+ .||..++ +++|+
T Consensus       207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~  233 (571)
T 3cvr_A          207 ETEIFFRCRENRIT-HIPENILSLDPTC  233 (571)
T ss_dssp             -CCEEEECCSSCCC-CCCGGGGGSCTTE
T ss_pred             ccceEEecCCCcce-ecCHHHhcCCCCC
Confidence               99999999999 7999877 65553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.55  E-value=6.4e-08  Score=101.66  Aligned_cols=87  Identities=24%  Similarity=0.324  Sum_probs=76.6

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ..+++|+.|+|++|++.+..+  +..+++|+.|+|++|++++..| +..+++|+.|++++|++++.  ..+..+++|+.|
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  358 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL  358 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence            456789999999999986544  8899999999999999998776 78999999999999999864  478999999999


Q ss_pred             EccCCcCcccCC
Q 042915          479 FLQNNNLDGQIP  490 (501)
Q Consensus       479 ~Ls~N~l~g~lP  490 (501)
                      ++++|++++..|
T Consensus       359 ~l~~n~l~~~~~  370 (466)
T 1o6v_A          359 SAGHNQISDLTP  370 (466)
T ss_dssp             ECCSSCCCBCGG
T ss_pred             eCCCCccCccch
Confidence            999999997655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.52  E-value=1.7e-07  Score=98.63  Aligned_cols=84  Identities=25%  Similarity=0.253  Sum_probs=69.4

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ...+++|+.|+|++|++++. |  ++.+++|++|++++|++++. + ++.+++|+.|+|++|++++ +|  ++.+++|++
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~  131 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY  131 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred             hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence            34567888899999998864 3  88889999999999998875 3 8888999999999999986 44  888899999


Q ss_pred             EEccCCcCcccCC
Q 042915          478 IFLQNNNLDGQIP  490 (501)
Q Consensus       478 L~Ls~N~l~g~lP  490 (501)
                      |++++|+|++ +|
T Consensus       132 L~l~~N~l~~-l~  143 (457)
T 3bz5_A          132 LNCARNTLTE-ID  143 (457)
T ss_dssp             EECTTSCCSC-CC
T ss_pred             EECCCCccce-ec
Confidence            9999999985 55

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.51  E-value=2.1e-07  Score=97.84  Aligned_cols=78  Identities=19%  Similarity=0.208  Sum_probs=36.8

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      +++|+.|++++|++++ +|  +..+++|+.|++++|++++.  +++.+++|+.|+|++|++++ +|  ++.+++|+.|++
T Consensus       169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l  240 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC  240 (457)
T ss_dssp             CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred             CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence            3444455555555443 22  44444455555555554443  24444455555555555543 33  444444555555


Q ss_pred             cCCcCc
Q 042915          481 QNNNLD  486 (501)
Q Consensus       481 s~N~l~  486 (501)
                      ++|+|+
T Consensus       241 ~~N~l~  246 (457)
T 3bz5_A          241 SVNPLT  246 (457)
T ss_dssp             CSSCCS
T ss_pred             eCCcCC
Confidence            555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.46  E-value=4.1e-07  Score=95.54  Aligned_cols=83  Identities=30%  Similarity=0.449  Sum_probs=63.4

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      .+|+.|++++|++++ +| .++++++|+.|++++|++++. |.+  .++|+.|++++|++. .+|. ++.+++|+.|+++
T Consensus       173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~--~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~  245 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL--PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYAD  245 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC--cCcccEEECcCCcCC-cccc-cCCCCCCCEEECC
Confidence            478899999999986 56 589999999999999998863 332  247778888888777 6664 7777788888888


Q ss_pred             CCcCcccCCcc
Q 042915          482 NNNLDGQIPDG  492 (501)
Q Consensus       482 ~N~l~g~lP~~  492 (501)
                      +|+++ .+|..
T Consensus       246 ~N~l~-~l~~~  255 (454)
T 1jl5_A          246 NNLLK-TLPDL  255 (454)
T ss_dssp             SSCCS-SCCSC
T ss_pred             CCcCC-ccccc
Confidence            88777 46653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.45  E-value=1e-09  Score=101.82  Aligned_cols=89  Identities=19%  Similarity=0.287  Sum_probs=52.7

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCc-cccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIP-QTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P-~~~~~l~~L~~L~  479 (501)
                      +++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++ +|.+..+++|+.|+|++|++++..+ ..+..+++|++|+
T Consensus        69 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence            345556666666655 445555555566666666666654 2345556666666676666663221 3566777777777


Q ss_pred             ccCCcCcccCCc
Q 042915          480 LQNNNLDGQIPD  491 (501)
Q Consensus       480 Ls~N~l~g~lP~  491 (501)
                      +++|++++.+|.
T Consensus       147 l~~N~l~~~~~~  158 (198)
T 1ds9_A          147 LAGNPLYNDYKE  158 (198)
T ss_dssp             ECSCHHHHHHHT
T ss_pred             ecCCcccccccc
Confidence            777777655443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.42  E-value=1.5e-08  Score=101.35  Aligned_cols=82  Identities=15%  Similarity=0.325  Sum_probs=35.3

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCC-cCCCC-CcC-CCCCCCCCEEEccCC-cCCcc-CccccCCCC-CC
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGN-KLWGQ-IPE-MKTLTALETLHLENN-QFEGW-IPQTLSQLP-IL  475 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N-~l~~~-~p~-~~~l~~L~~L~Ls~N-~l~g~-~P~~~~~l~-~L  475 (501)
                      ++|+.|+|++|.+++..+..+..+++|++|+|++| .+++. ++. +..+++|+.|+|++| .+++. ++..+..++ +|
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            34444444444444444444444444444444444 33321 222 334444444444444 44432 333344444 44


Q ss_pred             CEEEccCC
Q 042915          476 REIFLQNN  483 (501)
Q Consensus       476 ~~L~Ls~N  483 (501)
                      ++|+|++|
T Consensus       198 ~~L~l~~~  205 (336)
T 2ast_B          198 TQLNLSGY  205 (336)
T ss_dssp             CEEECCSC
T ss_pred             CEEEeCCC
Confidence            44444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.41  E-value=4.4e-09  Score=97.53  Aligned_cols=97  Identities=22%  Similarity=0.257  Sum_probs=79.0

Q ss_pred             cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915          397 NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR  476 (501)
Q Consensus       397 ~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~  476 (501)
                      ....+++|+.|+|++|++++ +| .+.++++|+.|+|++|+++..++.+..+++|+.|+|++|++++ +| .++.+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence            33456789999999999996 67 8999999999999999998544345677999999999999995 56 688899999


Q ss_pred             EEEccCCcCcccCCc--cCC-CCCC
Q 042915          477 EIFLQNNNLDGQIPD--GLW-KPGL  498 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~--~~~-~~~L  498 (501)
                      .|+|++|+++ .+|.  .+. +++|
T Consensus       119 ~L~l~~N~i~-~~~~~~~l~~l~~L  142 (198)
T 1ds9_A          119 VLYMSNNKIT-NWGEIDKLAALDKL  142 (198)
T ss_dssp             EEEESEEECC-CHHHHHHHTTTTTC
T ss_pred             EEECCCCcCC-chhHHHHHhcCCCC
Confidence            9999999998 4553  444 4444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.40  E-value=5.1e-07  Score=94.78  Aligned_cols=96  Identities=25%  Similarity=0.396  Sum_probs=60.5

Q ss_pred             cceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccC
Q 042915          391 WTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLS  470 (501)
Q Consensus       391 w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~  470 (501)
                      ..+++ ....+++|+.|++++|++++ +|..+   .+|++|++++|++++ +|+++++++|+.|++++|++++ +|... 
T Consensus       143 l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~-  214 (454)
T 1jl5_A          143 LEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLP-  214 (454)
T ss_dssp             CSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred             CCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCc-
Confidence            33444 34556667777777777764 44432   467777777777766 4567777777777777777764 44422 


Q ss_pred             CCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915          471 QLPILREIFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       471 ~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                        ++|+.|++++|.++ .+|. +. +++|
T Consensus       215 --~~L~~L~l~~n~l~-~lp~-~~~l~~L  239 (454)
T 1jl5_A          215 --LSLESIVAGNNILE-ELPE-LQNLPFL  239 (454)
T ss_dssp             --TTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred             --CcccEEECcCCcCC-cccc-cCCCCCC
Confidence              46777777777777 6774 44 4443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.39  E-value=1.8e-07  Score=102.11  Aligned_cols=84  Identities=24%  Similarity=0.313  Sum_probs=70.7

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      ++|+.|+|++|+|++ +|   ..+++|+.|+|++|+|+..++   .+++|+.|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            578899999999985 55   456889999999999986444   6788999999999999 789999999999999999


Q ss_pred             CCcCcccCCccC
Q 042915          482 NNNLDGQIPDGL  493 (501)
Q Consensus       482 ~N~l~g~lP~~~  493 (501)
                      +|+|++.+|..+
T Consensus       293 ~N~l~~~~~~~l  304 (622)
T 3g06_A          293 GNPLSERTLQAL  304 (622)
T ss_dssp             SCCCCHHHHHHH
T ss_pred             CCCCCCcCHHHH
Confidence            999987766543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.35  E-value=7.7e-07  Score=97.11  Aligned_cols=86  Identities=20%  Similarity=0.258  Sum_probs=65.6

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      ++|+.|++++|.++ .+|.   .+++|+.|+|++|++++.+   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|+
T Consensus       201 ~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls  269 (622)
T 3g06_A          201 SELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY  269 (622)
T ss_dssp             TTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             chhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence            35566666666665 3333   2377899999999998744   55688999999999998 6776   67899999999


Q ss_pred             CCcCcccCCccCC-CCCCc
Q 042915          482 NNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       482 ~N~l~g~lP~~~~-~~~L~  499 (501)
                      +|+|+ .||..+. +++|+
T Consensus       270 ~N~L~-~lp~~l~~l~~L~  287 (622)
T 3g06_A          270 RNQLT-RLPESLIHLSSET  287 (622)
T ss_dssp             SSCCC-SCCGGGGGSCTTC
T ss_pred             CCCCC-cCCHHHhhccccC
Confidence            99999 8998877 66553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.24  E-value=1.1e-07  Score=97.09  Aligned_cols=94  Identities=19%  Similarity=0.243  Sum_probs=77.5

Q ss_pred             CCeeEEEecCCCCccc--c---cCcccccCCCCCCeeecCCCcCC----CCCc-CCCCCCCCCEEEccCCcCCcc----C
Q 042915          400 KHTRVVSIDLKGFEIS--G---TLPESIGNLTALKHLRLGGNKLW----GQIP-EMKTLTALETLHLENNQFEGW----I  465 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~--g---~~p~~~~~L~~L~~L~Ls~N~l~----~~~p-~~~~l~~L~~L~Ls~N~l~g~----~  465 (501)
                      .+++|+.|+|++|++.  |   ..+..+..+++|+.|+|++|.++    +.+| .+..+++|+.|+|++|.+.+.    +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            3458899999999997  3   45557889999999999999995    4455 478899999999999999865    5


Q ss_pred             cccc--CCCCCCCEEEccCCcCcc----cCCccC
Q 042915          466 PQTL--SQLPILREIFLQNNNLDG----QIPDGL  493 (501)
Q Consensus       466 P~~~--~~l~~L~~L~Ls~N~l~g----~lP~~~  493 (501)
                      |..+  +.+++|+.|+|++|.|++    .+|..+
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            6776  448999999999999996    488766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.24  E-value=4.8e-08  Score=97.54  Aligned_cols=101  Identities=16%  Similarity=0.255  Sum_probs=82.8

Q ss_pred             CCCeeEEEecCCCC-cccc-cCcccccCCCCCCeeecCCC-cCCCC-CcC-CCCCC-CCCEEEccCC--cCC-ccCcccc
Q 042915          399 SKHTRVVSIDLKGF-EISG-TLPESIGNLTALKHLRLGGN-KLWGQ-IPE-MKTLT-ALETLHLENN--QFE-GWIPQTL  469 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n-~l~g-~~p~~~~~L~~L~~L~Ls~N-~l~~~-~p~-~~~l~-~L~~L~Ls~N--~l~-g~~P~~~  469 (501)
                      ..+++|+.|+|++| .+++ .++..+.++++|+.|++++| .+++. ++. +..++ +|+.|+|++|  .++ +.+|..+
T Consensus       139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~  218 (336)
T 2ast_B          139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV  218 (336)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred             hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence            45789999999999 6876 36777899999999999999 88864 443 68889 9999999999  555 5678888


Q ss_pred             CCCCCCCEEEccCCc-CcccCCccCC-CCCCc
Q 042915          470 SQLPILREIFLQNNN-LDGQIPDGLW-KPGLN  499 (501)
Q Consensus       470 ~~l~~L~~L~Ls~N~-l~g~lP~~~~-~~~L~  499 (501)
                      ..+++|+.|+|++|. +++..+..+. +++|+
T Consensus       219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  250 (336)
T 2ast_B          219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  250 (336)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence            899999999999999 7766777666 55543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.23  E-value=1.2e-07  Score=96.80  Aligned_cols=91  Identities=19%  Similarity=0.230  Sum_probs=78.4

Q ss_pred             CCeeEEEecCCCCccc----ccCcccccCCCCCCeeecCCCcCCCC----Cc-CC--CCCCCCCEEEccCCcCCc----c
Q 042915          400 KHTRVVSIDLKGFEIS----GTLPESIGNLTALKHLRLGGNKLWGQ----IP-EM--KTLTALETLHLENNQFEG----W  464 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~----g~~p~~~~~L~~L~~L~Ls~N~l~~~----~p-~~--~~l~~L~~L~Ls~N~l~g----~  464 (501)
                      .+++|+.|+|++|.++    +.+|..+..+++|+.|+|++|++++.    ++ .+  +.+++|+.|+|++|.+.+    .
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~  293 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  293 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence            4568999999999996    67888999999999999999999875    33 34  559999999999999997    4


Q ss_pred             Ccccc-CCCCCCCEEEccCCcCcccCC
Q 042915          465 IPQTL-SQLPILREIFLQNNNLDGQIP  490 (501)
Q Consensus       465 ~P~~~-~~l~~L~~L~Ls~N~l~g~lP  490 (501)
                      +|..+ .++++|+.|+|++|++++..|
T Consensus       294 l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          294 LKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhcCCCceEEEccCCcCCcchh
Confidence            88887 668999999999999996543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=3.6e-07  Score=89.03  Aligned_cols=78  Identities=22%  Similarity=0.325  Sum_probs=41.1

Q ss_pred             CeeEEEecCCCCcccc--cCcccccCCCCCCeeecCCCcCCCCCcCCCCCC--CCCEEEccCCcCCccCcc-------cc
Q 042915          401 HTRVVSIDLKGFEISG--TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLT--ALETLHLENNQFEGWIPQ-------TL  469 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~--~L~~L~Ls~N~l~g~~P~-------~~  469 (501)
                      +++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++. .++..+.  +|+.|+|++|.+.+.+|.       .+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            3455666666666655  3344455566666666666666554 2222222  566666666666554442       24


Q ss_pred             CCCCCCCEEE
Q 042915          470 SQLPILREIF  479 (501)
Q Consensus       470 ~~l~~L~~L~  479 (501)
                      ..+++|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            4555555553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.13  E-value=2.5e-07  Score=93.94  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=67.6

Q ss_pred             Ce-eEEEecCCCCcccccCcccccCC-----CCCCeeecCCCcCCCCCcC-----CCCC-CCCCEEEccCCcCCccCccc
Q 042915          401 HT-RVVSIDLKGFEISGTLPESIGNL-----TALKHLRLGGNKLWGQIPE-----MKTL-TALETLHLENNQFEGWIPQT  468 (501)
Q Consensus       401 l~-~l~~L~Ls~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~~~~p~-----~~~l-~~L~~L~Ls~N~l~g~~P~~  468 (501)
                      ++ +|+.|+|++|++.+..+..+..+     ++|+.|+|++|++++..+.     +..+ ++|+.|+|++|++++..+..
T Consensus        49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  128 (362)
T 3goz_A           49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE  128 (362)
T ss_dssp             CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence            44 78899999999887777767665     8899999999998877664     3445 78999999999988666554


Q ss_pred             c----CC-CCCCCEEEccCCcCcc
Q 042915          469 L----SQ-LPILREIFLQNNNLDG  487 (501)
Q Consensus       469 ~----~~-l~~L~~L~Ls~N~l~g  487 (501)
                      +    .. .++|++|+|++|.|+.
T Consensus       129 l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A          129 FKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHhCCCceeEEEccCCcCCH
Confidence            3    33 3689999999998884

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=8.4e-07  Score=86.41  Aligned_cols=83  Identities=27%  Similarity=0.366  Sum_probs=62.9

Q ss_pred             ecCCCCccc---ccCcccccCCCCCCeeecCCCcCCCC--CcC-CCCCCCCCEEEccCCcCCccCccccCCCC--CCCEE
Q 042915          407 IDLKGFEIS---GTLPESIGNLTALKHLRLGGNKLWGQ--IPE-MKTLTALETLHLENNQFEGWIPQTLSQLP--ILREI  478 (501)
Q Consensus       407 L~Ls~n~l~---g~~p~~~~~L~~L~~L~Ls~N~l~~~--~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~--~L~~L  478 (501)
                      ++++.|...   +.++....++++|+.|+|++|+|++.  +|. +..+++|+.|+|++|+|++.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            566677433   22233335789999999999999984  344 47899999999999999964  3344444  99999


Q ss_pred             EccCCcCcccCCc
Q 042915          479 FLQNNNLDGQIPD  491 (501)
Q Consensus       479 ~Ls~N~l~g~lP~  491 (501)
                      +|++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999987773

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.04  E-value=5.3e-06  Score=82.83  Aligned_cols=95  Identities=16%  Similarity=0.121  Sum_probs=80.6

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCC-EEEccCCcCCccCccccCCCCCCCEEE
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALE-TLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~-~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      .+|+.|+|++|+++...+..|.++++|+.|+|++| ++.+.+ .|.++.+|+ .|+|.+ .++..-+.+|.+|++|+.|+
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            57889999999999777788999999999999998 765555 489999999 999998 77756678999999999999


Q ss_pred             ccCCcCcccCCccCC--CCCCc
Q 042915          480 LQNNNLDGQIPDGLW--KPGLN  499 (501)
Q Consensus       480 Ls~N~l~g~lP~~~~--~~~L~  499 (501)
                      +++|+++ .|+...+  .++|+
T Consensus       304 l~~n~i~-~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          304 ATGDKIT-TLGDELFGNGVPSK  324 (329)
T ss_dssp             ECSSCCC-EECTTTTCTTCCCC
T ss_pred             eCCCccC-ccchhhhcCCcchh
Confidence            9999999 7877544  55554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.00  E-value=8.1e-07  Score=90.09  Aligned_cols=90  Identities=19%  Similarity=0.203  Sum_probs=74.2

Q ss_pred             CeeEEEecCCCCcccccCc----ccccCCC-CCCeeecCCCcCCCCCc-CCCCC-----CCCCEEEccCCcCCccCcccc
Q 042915          401 HTRVVSIDLKGFEISGTLP----ESIGNLT-ALKHLRLGGNKLWGQIP-EMKTL-----TALETLHLENNQFEGWIPQTL  469 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p----~~~~~L~-~L~~L~Ls~N~l~~~~p-~~~~l-----~~L~~L~Ls~N~l~g~~P~~~  469 (501)
                      ..+|+.|+|++|.+++..+    ..+..++ +|+.|+|++|++++..+ .+..+     ++|+.|+|++|++++..+..+
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            3459999999999997766    7788898 99999999999998766 34443     999999999999997777654


Q ss_pred             C----CC-CCCCEEEccCCcCcccCC
Q 042915          470 S----QL-PILREIFLQNNNLDGQIP  490 (501)
Q Consensus       470 ~----~l-~~L~~L~Ls~N~l~g~lP  490 (501)
                      .    .+ ++|+.|+|++|+|++..+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHH
Confidence            4    44 899999999999985433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.98  E-value=5.8e-06  Score=83.38  Aligned_cols=85  Identities=21%  Similarity=0.228  Sum_probs=59.0

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCC-CcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGG-NKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~-N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      ..++.|+|++|+|+. ++.......+|+.|++++ |.++.++++ |.++++|+.|+|++|+|+ .+|..  .+.+|+.|.
T Consensus       154 ~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~  229 (350)
T 4ay9_X          154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLR  229 (350)
T ss_dssp             SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEE
T ss_pred             hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhh
Confidence            357889999999984 555555667889999875 556555444 688999999999999998 45542  245566666


Q ss_pred             ccCC-cCcccCCc
Q 042915          480 LQNN-NLDGQIPD  491 (501)
Q Consensus       480 Ls~N-~l~g~lP~  491 (501)
                      +.++ .++ .+|.
T Consensus       230 ~l~~~~l~-~lP~  241 (350)
T 4ay9_X          230 ARSTYNLK-KLPT  241 (350)
T ss_dssp             CTTCTTCC-CCCC
T ss_pred             hccCCCcC-cCCC
Confidence            5443 444 7884

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.94  E-value=6.8e-07  Score=93.07  Aligned_cols=87  Identities=22%  Similarity=0.227  Sum_probs=70.2

Q ss_pred             eeEEEecCCCCccccc----CcccccCCCCCCeeecCCCcCCCCCc-CC----C-CCCCCCEEEccCCcCCc----cCcc
Q 042915          402 TRVVSIDLKGFEISGT----LPESIGNLTALKHLRLGGNKLWGQIP-EM----K-TLTALETLHLENNQFEG----WIPQ  467 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~----~-~l~~L~~L~Ls~N~l~g----~~P~  467 (501)
                      ++|+.|+|++|.+++.    ++..+..+++|+.|+|++|++++..+ .+    . ..++|+.|+|++|++++    .+|.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            4788899999988865    56667788999999999998876533 22    2 26789999999999986    7888


Q ss_pred             ccCCCCCCCEEEccCCcCccc
Q 042915          468 TLSQLPILREIFLQNNNLDGQ  488 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~l~g~  488 (501)
                      .+..+++|++|+|++|++++.
T Consensus       393 ~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHhCCCccEEECCCCCCCHH
Confidence            888899999999999998753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.73  E-value=1.1e-06  Score=91.57  Aligned_cols=94  Identities=17%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             CeeEEEecCCCCcccccCcccccC-----CCCCCeeecCCCcCCCCC----c-CCCCCCCCCEEEccCCcCCccCccccC
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGN-----LTALKHLRLGGNKLWGQI----P-EMKTLTALETLHLENNQFEGWIPQTLS  470 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~-----L~~L~~L~Ls~N~l~~~~----p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~  470 (501)
                      +++|+.|+|++|.+....+..+..     .++|+.|+|++|.+++..    + .+..+++|+.|+|++|.+.+..+..+.
T Consensus       283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  362 (461)
T 1z7x_W          283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC  362 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred             CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence            456777888888776443333322     257888888888877542    2 246678888888888888765444443


Q ss_pred             C-----CCCCCEEEccCCcCcc----cCCccCC
Q 042915          471 Q-----LPILREIFLQNNNLDG----QIPDGLW  494 (501)
Q Consensus       471 ~-----l~~L~~L~Ls~N~l~g----~lP~~~~  494 (501)
                      .     .++|+.|+|++|++++    .+|..+.
T Consensus       363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  395 (461)
T 1z7x_W          363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  395 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             HHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence            2     6788888888888875    5665544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.63  E-value=6.3e-06  Score=84.19  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=65.4

Q ss_pred             eeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCCC----c-CCCCCCCCCEEEccCCcCCc----cCccc
Q 042915          402 TRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQI----P-EMKTLTALETLHLENNQFEG----WIPQT  468 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~----p-~~~~l~~L~~L~Ls~N~l~g----~~P~~  468 (501)
                      ++|+.|+|++|.|+.    .++..+..+++|++|+|++|.++..-    . .+...++|+.|+|++|.++.    .++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            578899999999864    34555677888999999999986431    2 25667789999999999874    24445


Q ss_pred             cCCCCCCCEEEccCCcCcc
Q 042915          469 LSQLPILREIFLQNNNLDG  487 (501)
Q Consensus       469 ~~~l~~L~~L~Ls~N~l~g  487 (501)
                      +...++|+.|+|++|.|+.
T Consensus       235 L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCH
T ss_pred             HHhCCCCCEEeccCCCCCH
Confidence            5567889999999998863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.47  E-value=1.7e-05  Score=80.92  Aligned_cols=87  Identities=16%  Similarity=0.156  Sum_probs=65.7

Q ss_pred             CeeEEEecCCCCcccccCcccc-----cCCCCCCeeecCCCcCCCCC----c-CCCCCCCCCEEEccCCcCCc----cCc
Q 042915          401 HTRVVSIDLKGFEISGTLPESI-----GNLTALKHLRLGGNKLWGQI----P-EMKTLTALETLHLENNQFEG----WIP  466 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~-----~~L~~L~~L~Ls~N~l~~~~----p-~~~~l~~L~~L~Ls~N~l~g----~~P  466 (501)
                      +.+|+.|+|++|.|+..-...+     ...++|+.|+|++|.++..-    + .+..+++|+.|+|++|.+..    .++
T Consensus       125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~  204 (372)
T 3un9_A          125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA  204 (372)
T ss_dssp             HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred             HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence            3478999999999874433333     34678999999999986421    1 24678899999999999874    235


Q ss_pred             cccCCCCCCCEEEccCCcCcc
Q 042915          467 QTLSQLPILREIFLQNNNLDG  487 (501)
Q Consensus       467 ~~~~~l~~L~~L~Ls~N~l~g  487 (501)
                      ..+...++|+.|+|++|.|+.
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHhcCCCcCeEECCCCCCCH
Confidence            667778899999999999873

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.35  E-value=0.00026  Score=70.44  Aligned_cols=64  Identities=14%  Similarity=0.078  Sum_probs=39.2

Q ss_pred             CCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC-EEEccCCcCcccCCc
Q 042915          425 LTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR-EIFLQNNNLDGQIPD  491 (501)
Q Consensus       425 L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~-~L~Ls~N~l~g~lP~  491 (501)
                      +++|+.|+|++|+++.+.+ .|.++++|+.|+|++| +...-+.+|.++.+|+ .|+|.+ .++ .|++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~  290 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEF  290 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEch
Confidence            4566666666666665444 3666666777777666 5544445666666676 666666 555 4554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.34  E-value=3.5e-05  Score=70.47  Aligned_cols=86  Identities=19%  Similarity=0.220  Sum_probs=63.0

Q ss_pred             CeeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCC-----CcCCCCCCCCCEEEc--cCCcCCcc----C
Q 042915          401 HTRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQ-----IPEMKTLTALETLHL--ENNQFEGW----I  465 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~-----~p~~~~l~~L~~L~L--s~N~l~g~----~  465 (501)
                      .++|++|+|++|.|..    .+...+...+.|++|+|++|.|...     ...+...+.|+.|+|  ++|.+...    +
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            4578889999998863    2445566678899999999988753     123566788999999  78888743    3


Q ss_pred             ccccCCCCCCCEEEccCCcCc
Q 042915          466 PQTLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       466 P~~~~~l~~L~~L~Ls~N~l~  486 (501)
                      .+.+...++|+.|+|++|.+.
T Consensus       144 ~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          144 ANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCcCEEeccCCCCC
Confidence            345556688999999988874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.31  E-value=2.2e-05  Score=84.37  Aligned_cols=88  Identities=16%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             CeeEEEecCCCCc--ccccCccccc-CCCCCCeeecCCCcCCCC-CcC-CCCCCCCCEEEccCCcCCcc-CccccCCCCC
Q 042915          401 HTRVVSIDLKGFE--ISGTLPESIG-NLTALKHLRLGGNKLWGQ-IPE-MKTLTALETLHLENNQFEGW-IPQTLSQLPI  474 (501)
Q Consensus       401 l~~l~~L~Ls~n~--l~g~~p~~~~-~L~~L~~L~Ls~N~l~~~-~p~-~~~l~~L~~L~Ls~N~l~g~-~P~~~~~l~~  474 (501)
                      +++|+.|+|+.|.  +++.....+. .+++|+.|++++|++++. ++. +..+++|+.|+|++|.+++. ++..+..+++
T Consensus       435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  514 (592)
T 3ogk_B          435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS  514 (592)
T ss_dssp             CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred             CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence            5678888887543  5554444443 488999999999998763 444 47889999999999998754 4445567899


Q ss_pred             CCEEEccCCcCccc
Q 042915          475 LREIFLQNNNLDGQ  488 (501)
Q Consensus       475 L~~L~Ls~N~l~g~  488 (501)
                      |+.|+|++|+++..
T Consensus       515 L~~L~ls~n~it~~  528 (592)
T 3ogk_B          515 LRYLWVQGYRASMT  528 (592)
T ss_dssp             CCEEEEESCBCCTT
T ss_pred             cCeeECcCCcCCHH
Confidence            99999999998743

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.25  E-value=3.7e-05  Score=70.32  Aligned_cols=85  Identities=20%  Similarity=0.297  Sum_probs=66.4

Q ss_pred             eeEEEecCCCC-cccc----cCcccccCCCCCCeeecCCCcCCCCC----c-CCCCCCCCCEEEccCCcCCcc----Ccc
Q 042915          402 TRVVSIDLKGF-EISG----TLPESIGNLTALKHLRLGGNKLWGQI----P-EMKTLTALETLHLENNQFEGW----IPQ  467 (501)
Q Consensus       402 ~~l~~L~Ls~n-~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~----p-~~~~l~~L~~L~Ls~N~l~g~----~P~  467 (501)
                      ++|++|+|++| .|..    .+...+...++|++|+|++|++...-    . .+...+.|+.|+|++|.+...    +.+
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            57889999999 8863    24556777889999999999986421    1 245568899999999999753    456


Q ss_pred             ccCCCCCCCEEEc--cCCcCc
Q 042915          468 TLSQLPILREIFL--QNNNLD  486 (501)
Q Consensus       468 ~~~~l~~L~~L~L--s~N~l~  486 (501)
                      .+...++|++|+|  ++|.|.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHhCCCceEEEecCCCCCCC
Confidence            7778889999999  889886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.97  E-value=0.00014  Score=65.92  Aligned_cols=83  Identities=13%  Similarity=0.140  Sum_probs=63.1

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCc-CCCC-CcCCCCC----CCCCEEEccCCc-CCccCccccCCCCC
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNK-LWGQ-IPEMKTL----TALETLHLENNQ-FEGWIPQTLSQLPI  474 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~~~-~p~~~~l----~~L~~L~Ls~N~-l~g~~P~~~~~l~~  474 (501)
                      .+|++|+|+++.++..--..+.++++|+.|+|++|. ++.. +..+..+    ++|+.|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            479999999999875434557899999999999996 5432 2234554    479999999985 76433345778999


Q ss_pred             CCEEEccCCc
Q 042915          475 LREIFLQNNN  484 (501)
Q Consensus       475 L~~L~Ls~N~  484 (501)
                      |+.|+|+++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.72  E-value=0.00037  Score=74.68  Aligned_cols=85  Identities=18%  Similarity=0.074  Sum_probs=48.4

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCC---CCC-cCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLW---GQI-PEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~---~~~-p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      +|+.|+|++|.+.+ ++..+.++++|+.|++++....   +.. ..+..+++|+.|+++++.. +.+|..+..+++|++|
T Consensus       221 ~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          221 SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKL  298 (592)
T ss_dssp             TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEE
T ss_pred             CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEE
Confidence            44444555444443 3344444455555555432111   011 1245666777777776533 3677778888899999


Q ss_pred             EccCCcCcccC
Q 042915          479 FLQNNNLDGQI  489 (501)
Q Consensus       479 ~Ls~N~l~g~l  489 (501)
                      +|++|.+++..
T Consensus       299 ~Ls~~~l~~~~  309 (592)
T 3ogk_B          299 DLLYALLETED  309 (592)
T ss_dssp             EETTCCCCHHH
T ss_pred             ecCCCcCCHHH
Confidence            99999876433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.63  E-value=0.00014  Score=77.98  Aligned_cols=85  Identities=14%  Similarity=0.182  Sum_probs=60.9

Q ss_pred             CeeEEEecCCCCcccccCcccccC-CCCCCeeecCCCcCCCCCc-CC-CCCCCCCEEEccCCcCCccCcc-ccCCCCCCC
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGN-LTALKHLRLGGNKLWGQIP-EM-KTLTALETLHLENNQFEGWIPQ-TLSQLPILR  476 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~-L~~L~~L~Ls~N~l~~~~p-~~-~~l~~L~~L~Ls~N~l~g~~P~-~~~~l~~L~  476 (501)
                      +++|+.|+|++ .++......+.. +++|+.|+|++|.+++... .+ ..+++|+.|+|++|.+++..+. .+..+++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            45788888876 666554455554 7889999999888865433 33 5688899999999988644333 344578899


Q ss_pred             EEEccCCcCc
Q 042915          477 EIFLQNNNLD  486 (501)
Q Consensus       477 ~L~Ls~N~l~  486 (501)
                      .|+|++|+++
T Consensus       510 ~L~l~~~~~~  519 (594)
T 2p1m_B          510 SLWMSSCSVS  519 (594)
T ss_dssp             EEEEESSCCB
T ss_pred             EEeeeCCCCC
Confidence            9999988875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.52  E-value=0.0045  Score=53.03  Aligned_cols=55  Identities=29%  Similarity=0.411  Sum_probs=41.5

Q ss_pred             EecCCCCccc-ccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCC
Q 042915          406 SIDLKGFEIS-GTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFE  462 (501)
Q Consensus       406 ~L~Ls~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~  462 (501)
                      .++-++++|+ ..+|..+.  ++|+.|+|++|+|+.+.+. |..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5667777775 34554332  3689999999999877774 688999999999999774

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.42  E-value=0.00032  Score=75.13  Aligned_cols=83  Identities=17%  Similarity=0.157  Sum_probs=57.7

Q ss_pred             CeeEEEecCCCC-ccccc-CcccccCCCCCCeeecCCCcCCCCCc----CC-CCCCCCCEEEccCCc--CCc-cCccccC
Q 042915          401 HTRVVSIDLKGF-EISGT-LPESIGNLTALKHLRLGGNKLWGQIP----EM-KTLTALETLHLENNQ--FEG-WIPQTLS  470 (501)
Q Consensus       401 l~~l~~L~Ls~n-~l~g~-~p~~~~~L~~L~~L~Ls~N~l~~~~p----~~-~~l~~L~~L~Ls~N~--l~g-~~P~~~~  470 (501)
                      +++|+.|+|++| .++.. ++..+.++++|++|+|++|.+++..+    .+ ..+++|+.|+|++|.  +.. .++..+.
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~  208 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT  208 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence            457888899888 45432 44555678899999999998776443    22 467889999999886  221 1222234


Q ss_pred             CCCCCCEEEccCC
Q 042915          471 QLPILREIFLQNN  483 (501)
Q Consensus       471 ~l~~L~~L~Ls~N  483 (501)
                      .+++|+.|+|++|
T Consensus       209 ~~~~L~~L~L~~~  221 (594)
T 2p1m_B          209 RCPNLKSLKLNRA  221 (594)
T ss_dssp             HCTTCCEEECCTT
T ss_pred             hCCCCcEEecCCC
Confidence            5689999999988

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.21  E-value=0.0073  Score=61.97  Aligned_cols=91  Identities=9%  Similarity=0.100  Sum_probs=66.5

Q ss_pred             CCeeEEEecCCCCccc-----ccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCC
Q 042915          400 KHTRVVSIDLKGFEIS-----GTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLP  473 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~-----g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~  473 (501)
                      ++.+|+.|.+.+|.+.     ..-+..|.++++|+.++|.+ .++.+.. .|.++++|+.|.|..| ++..-+.+|.++ 
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-  345 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-  345 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-
Confidence            3456777777776654     35567788899999999984 4665444 4788899999999655 664556688888 


Q ss_pred             CCCEEEccCCcCcccCCccCC
Q 042915          474 ILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       474 ~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      +|+.|.+++|.+. .++...+
T Consensus       346 ~L~~l~l~~n~~~-~l~~~~F  365 (401)
T 4fdw_A          346 GIKEVKVEGTTPP-QVFEKVW  365 (401)
T ss_dssp             CCCEEEECCSSCC-BCCCSSC
T ss_pred             CCCEEEEcCCCCc-ccccccc
Confidence            8999999998887 5665433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.81  E-value=0.0014  Score=66.51  Aligned_cols=62  Identities=18%  Similarity=0.205  Sum_probs=25.9

Q ss_pred             CCCCCeeecCCCcCCCCCc-C---CCCCCCCCEEEccCCcCCcc----CccccCCCCCCCEEEccCCcCc
Q 042915          425 LTALKHLRLGGNKLWGQIP-E---MKTLTALETLHLENNQFEGW----IPQTLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       425 L~~L~~L~Ls~N~l~~~~p-~---~~~l~~L~~L~Ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~  486 (501)
                      +++|+.|+|.+|.+....+ .   ...+++|+.|+|+.|.+.+.    ++..+..+++|+.|+|++|.|+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4445555555444432111 0   12344455555555544431    2222233444555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.79  E-value=0.014  Score=49.95  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcC
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL  438 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l  438 (501)
                      +++.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455666666666644445555566666666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.50  E-value=0.0024  Score=64.77  Aligned_cols=87  Identities=16%  Similarity=0.199  Sum_probs=60.3

Q ss_pred             CeeEEEecCCCCcccccCccccc--CCCCCCeeecCC--CcCCCC--C----cCC--CCCCCCCEEEccCCcCCccCccc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIG--NLTALKHLRLGG--NKLWGQ--I----PEM--KTLTALETLHLENNQFEGWIPQT  468 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~--~L~~L~~L~Ls~--N~l~~~--~----p~~--~~l~~L~~L~Ls~N~l~g~~P~~  468 (501)
                      +++|+.|+|..+.+....-..+.  .+++|+.|+|+.  |...+.  +    +.+  ..+++|+.|+|++|.+....+..
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            45788888888887643333343  789999999864  222221  1    122  35799999999999987544433


Q ss_pred             c---CCCCCCCEEEccCCcCcc
Q 042915          469 L---SQLPILREIFLQNNNLDG  487 (501)
Q Consensus       469 ~---~~l~~L~~L~Ls~N~l~g  487 (501)
                      +   ..+++|+.|+|+.|.|..
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHhCccCCCCCEEECCCCCCCh
Confidence            3   357899999999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.12  E-value=0.04  Score=56.38  Aligned_cols=89  Identities=12%  Similarity=0.115  Sum_probs=53.5

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ++.+|+.|+|++|+++......|. ..+|+.+.|..+ ++.+.. .|.++++|+.++|..| ++..-..+|.+ .+|+.+
T Consensus       178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i  253 (401)
T 4fdw_A          178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV  253 (401)
T ss_dssp             TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred             CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence            455677777777777644444444 467777777644 443333 3677777777777764 44333445555 677777


Q ss_pred             EccCCcCcccCCccCC
Q 042915          479 FLQNNNLDGQIPDGLW  494 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~~~  494 (501)
                      .| .|.++ .|+...+
T Consensus       254 ~l-p~~i~-~I~~~aF  267 (401)
T 4fdw_A          254 KL-PNGVT-NIASRAF  267 (401)
T ss_dssp             EE-ETTCC-EECTTTT
T ss_pred             Ee-CCCcc-EEChhHh
Confidence            77 44555 5655433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.29  E-value=0.011  Score=54.43  Aligned_cols=84  Identities=14%  Similarity=0.142  Sum_probs=43.1

Q ss_pred             eeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCCCc-----CCCCCCCCCEEEccCCc---CCc----cC
Q 042915          402 TRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQIP-----EMKTLTALETLHLENNQ---FEG----WI  465 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-----~~~~l~~L~~L~Ls~N~---l~g----~~  465 (501)
                      +.|+.|+|++|+|..    .+...+..=+.|+.|+|++|.|...--     .+..-+.|+.|+|++|.   +..    .+
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            456666777766652    223334444566777777776653211     13334456677766542   221    12


Q ss_pred             ccccCCCCCCCEEEccCCcC
Q 042915          466 PQTLSQLPILREIFLQNNNL  485 (501)
Q Consensus       466 P~~~~~l~~L~~L~Ls~N~l  485 (501)
                      -+.+..-+.|+.|+++.|.+
T Consensus       150 a~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCcCeEeccCCCc
Confidence            23344445666666665543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=92.80  E-value=0.032  Score=50.34  Aligned_cols=61  Identities=16%  Similarity=0.172  Sum_probs=45.9

Q ss_pred             CCCCeeecCCCcCCCC-CcCCCCCCCCCEEEccCCc-CCccCccccCCC----CCCCEEEccCCc-Cc
Q 042915          426 TALKHLRLGGNKLWGQ-IPEMKTLTALETLHLENNQ-FEGWIPQTLSQL----PILREIFLQNNN-LD  486 (501)
Q Consensus       426 ~~L~~L~Ls~N~l~~~-~p~~~~l~~L~~L~Ls~N~-l~g~~P~~~~~l----~~L~~L~Ls~N~-l~  486 (501)
                      -.|+.|||+++.++.. +..+.++++|+.|+|++|. ++..--..+..+    ++|++|+|+++. ++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            4799999999997643 3457899999999999996 654323345554    379999999975 54

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.18  E-value=0.3  Score=48.78  Aligned_cols=87  Identities=9%  Similarity=0.074  Sum_probs=60.9

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      ..+++.+.+..+ ++..-...|.++++|+.+.+.++.++.+.+ .|.++.+|+.+.|..+ ++..-..+|.++.+|+.+.
T Consensus       262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  339 (379)
T 4h09_A          262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS  339 (379)
T ss_dssp             CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence            345666666543 544445678888999999998888876555 4788999999999755 5534455788889998888


Q ss_pred             ccCCcCcccCCc
Q 042915          480 LQNNNLDGQIPD  491 (501)
Q Consensus       480 Ls~N~l~g~lP~  491 (501)
                      +..+ ++ .|..
T Consensus       340 ip~~-v~-~I~~  349 (379)
T 4h09_A          340 YPKS-IT-LIES  349 (379)
T ss_dssp             CCTT-CC-EECT
T ss_pred             ECCc-cC-EEch
Confidence            8654 44 4443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.69  E-value=0.17  Score=51.09  Aligned_cols=93  Identities=12%  Similarity=0.057  Sum_probs=65.0

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      ..+|+.+.+..+ ++..-...|.++++|+.++|..+ ++.+-. .|.++.+|+.+.|..| ++..-..+|.++.+|+.+.
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            346667777654 55455667889999999999754 554433 4889999999999877 6644456899999999999


Q ss_pred             ccCCcCcccCCccCC-CCCC
Q 042915          480 LQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       480 Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      +..+ ++ .+...|. .++|
T Consensus       373 lp~~-~~-~~~~~F~~c~~L  390 (394)
T 4fs7_A          373 LPKR-LE-QYRYDFEDTTKF  390 (394)
T ss_dssp             EEGG-GG-GGGGGBCTTCEE
T ss_pred             ECCC-CE-EhhheecCCCCC
Confidence            9754 33 3444444 4444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.35  E-value=0.39  Score=48.45  Aligned_cols=81  Identities=11%  Similarity=0.128  Sum_probs=54.4

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      ..|+.+.+. +.++..-...|.++.+|+.++|..+ ++.+-. .|.++.+|+.+.|..+ ++..-..+|.++++|+.+++
T Consensus       288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence            455666664 3455455566788888888888754 443333 3788888888888654 55334557888888888888


Q ss_pred             cCCcC
Q 042915          481 QNNNL  485 (501)
Q Consensus       481 s~N~l  485 (501)
                      .+|..
T Consensus       365 ~~~~~  369 (394)
T 4gt6_A          365 SGSRS  369 (394)
T ss_dssp             SSCHH
T ss_pred             CCcee
Confidence            87654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.12  E-value=0.29  Score=48.88  Aligned_cols=72  Identities=13%  Similarity=0.071  Sum_probs=45.6

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCC
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLP  473 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~  473 (501)
                      .+.+|+.+.+.++.++..-...|.++.+|+.+.|..+ ++.+-. .|.++.+|+.+.|..+ ++..-..+|.++.
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            3456777777777777555667788888888888654 443333 3777788887777544 4422334555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.01  E-value=0.58  Score=47.10  Aligned_cols=93  Identities=12%  Similarity=0.211  Sum_probs=66.6

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      ...|+.+.+..+... .-...|.+++.|+.+.+. +.++.... .|.++.+|+.++|..+ ++..-..+|.++.+|+.+.
T Consensus       264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            346667777655443 455678899999999996 44554444 4899999999999865 5534456899999999999


Q ss_pred             ccCCcCcccCCccCC--CCCC
Q 042915          480 LQNNNLDGQIPDGLW--KPGL  498 (501)
Q Consensus       480 Ls~N~l~g~lP~~~~--~~~L  498 (501)
                      |..+ ++ .|....+  ..+|
T Consensus       341 ip~s-v~-~I~~~aF~~C~~L  359 (394)
T 4gt6_A          341 IPSS-VT-KIPESAFSNCTAL  359 (394)
T ss_dssp             ECTT-CC-BCCGGGGTTCTTC
T ss_pred             ECcc-cC-EEhHhHhhCCCCC
Confidence            9755 66 6776433  4554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.43  E-value=0.061  Score=49.41  Aligned_cols=83  Identities=16%  Similarity=0.222  Sum_probs=60.3

Q ss_pred             eeEEEecCCCC-cccc----cCcccccCCCCCCeeecCCCcCCCCCc-C----CCCCCCCCEEEccCCcCCc----cCcc
Q 042915          402 TRVVSIDLKGF-EISG----TLPESIGNLTALKHLRLGGNKLWGQIP-E----MKTLTALETLHLENNQFEG----WIPQ  467 (501)
Q Consensus       402 ~~l~~L~Ls~n-~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~----~~~l~~L~~L~Ls~N~l~g----~~P~  467 (501)
                      +.|++|+|++| +|..    .+-+.+..-+.|+.|+|++|++...-- .    +..=+.|+.|+|+.|.|..    .+-+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            36788999986 7642    244556777899999999999963211 1    3445789999999999974    2334


Q ss_pred             ccCCCCCCCEEEccCCc
Q 042915          468 TLSQLPILREIFLQNNN  484 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~  484 (501)
                      .+..-+.|++|+|++|.
T Consensus       121 aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HTTTTCCCSEEECCCCS
T ss_pred             HHhhCCceeEEECCCCc
Confidence            56666789999998653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=82.08  E-value=1.9  Score=43.22  Aligned_cols=76  Identities=14%  Similarity=0.089  Sum_probs=56.1

Q ss_pred             cccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC--C
Q 042915          419 PESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW--K  495 (501)
Q Consensus       419 p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~--~  495 (501)
                      ...|..+.+|+.+.+..+ ++.+-. .|.++.+|+.++|..+ ++..-..+|.++.+|+.+.+..| ++ .|+...+  .
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C  365 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGC  365 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTC
T ss_pred             cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCC
Confidence            345778899999999765 554433 4889999999999754 66444668999999999999877 66 6765433  4


Q ss_pred             CCC
Q 042915          496 PGL  498 (501)
Q Consensus       496 ~~L  498 (501)
                      .+|
T Consensus       366 ~~L  368 (394)
T 4fs7_A          366 INL  368 (394)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	501
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.9 bits (177), Expect = 1e-14
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 359 PRDVVAMEELAKHFKNPPI--DWN--GDPCLPWENSWTGVTCNK-SKHTRVVSIDLKGFE 413
           P+D  A+ ++ K   NP     W    D C     +W GV C+  ++  RV ++DL G  
Sbjct: 5   PQDKQALLQIKKDLGNPTTLSSWLPTTDCC---NRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 414 ISG--TLPESIGNLTALKHLRLGG--NKLWGQIPEMKTLTALETLHLENNQFEGWIPQTL 469
           +     +P S+ NL  L  L +GG  N +    P +  LT L  L++ +    G IP  L
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 470 SQLPILREIFLQNNNLDGQIPDGLWK 495
           SQ+  L  +    N L G +P  +  
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISS 147

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 22/91 (24%), Positives = 33/91 (36%)

Query: 371 HFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKH 430
                  D N       +NS             +  +DL+   I GTLP+ +  L  L  
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 431 LRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
           L +  N L G+IP+   L   +     NN+ 
Sbjct: 273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 439 WGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492
              + ++     L  L L NN+  G +PQ L+QL  L  + +  NNL G+IP G
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 375 PPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLG 434
           P         L    +        S    +  + L    IS   P  + +LT L+ L   
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFA 337

Query: 435 GNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
            NK+   +  +  LT +  L   +NQ     P  L+ L  + ++ L + 
Sbjct: 338 NNKVSD-VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 26/122 (21%)

Query: 387 WENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMK 446
             N    +    +  T +  +DL   +IS   P  +  LT L  L+LG N++    P   
Sbjct: 227 NGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG 283

Query: 447 ---------------------TLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
                                 L  L  L L  N      P  +S L  L+ +F  NN +
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 341

Query: 486 DG 487
             
Sbjct: 342 SD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 404 VVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEG 463
            +   L    ++ T+ ++  +L  +  L+     +   I  ++ L  L  ++  NNQ   
Sbjct: 24  KMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNNQLTD 80

Query: 464 WIPQTLSQLPILREIF 479
             P  L  L  L +I 
Sbjct: 81  ITP--LKNLTKLVDIL 94

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 423 GNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482
             LT L+ L    N++    P     T L+ L L  NQ +     TL+ L  L ++ L N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 483 NNLDGQIPDGLWK 495
           N +    P     
Sbjct: 251 NQISNLAPLSGLT 263

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 18/106 (16%)

Query: 390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTL 448
               V C+     +V              P+ +        L L  NK+      + K L
Sbjct: 11  HLRVVQCSDLGLEKV--------------PKDLP--PDTALLDLQNNKITEIKDGDFKNL 54

Query: 449 TALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494
             L TL L NN+     P   + L  L  ++L  N L   +P+ + 
Sbjct: 55  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP 99

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 6/124 (4%)

Query: 375 PPIDWNGDPCLPWENSW----TGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKH 430
           P         L    +          N      VV +     + SG    +   +  L +
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 154

Query: 431 LRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIP 490
           +R+    +   IP+     +L  LHL+ N+       +L  L  L ++ L  N++     
Sbjct: 155 IRIADTNIT-TIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212

Query: 491 DGLW 494
             L 
Sbjct: 213 GSLA 216

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 25/118 (21%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL----------------------- 438
             + ++ L   +IS   P +   L  L+ L L  N+L                       
Sbjct: 55  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK 114

Query: 439 -WGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
               +        +  L     +  G        +  L  I + + N+   IP GL  
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP 171

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 23/92 (25%)

Query: 417 TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTAL----------------------ETL 454
           T+   +  L  + HL L  N+L    P +  L  L                      + L
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 70

Query: 455 HLENNQFEGW-IPQTLSQLPILREIFLQNNNL 485
            L NN+ +     Q L   P L  + LQ N+L
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 8/106 (7%)

Query: 371 HFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKH 430
                 +            S   +         +  +++   ++   LP     L   + 
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ER 308

Query: 431 LRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476
           L    N L  ++PE      L+ LH+E N      P     +  LR
Sbjct: 309 LIASFNHL-AEVPE--LPQNLKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 14/114 (12%)

Query: 379 WNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGT----LPESIGNLTALKHLRLG 434
              +  L                + +  + L   ++S +    L  ++    +L+ L L 
Sbjct: 346 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 405

Query: 435 GNKLWGQIPEM------KTLTALETLHLENNQFEGWIPQTLSQL----PILREI 478
            N L             +    LE L L +  +   +   L  L    P LR I
Sbjct: 406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 406 SIDLKGFEISGT-LPESIGNLTALKHLRLGGNKLWGQIPE-----MKTLTALETLHLENN 459
           S+D++  E+S     E +  L   + +RL    L     +     ++   AL  L+L +N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494
           +        + Q        +Q  +L      G  
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 10/80 (12%)

Query: 424 NLTALKHLRLGGNKLWGQIPE-----MKTLTALETLHLENNQFEGWIPQTLSQ-----LP 473
             + L+ L L    +           +    +L  L L NN         L +       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 474 ILREIFLQNNNLDGQIPDGL 493
           +L ++ L +     ++ D L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRL 446

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
            R   +DL+G++I   +      L     +    N++  ++     L  L+TL + NN+ 
Sbjct: 18  VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRI 75

Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
                     LP L E+ L NN+L
Sbjct: 76  CRIGEGLDQALPDLTELILTNNSL 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 2/74 (2%)

Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
              N    + L L G K+        TL   + +   +N+           L  L+ + +
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLLV 70

Query: 481 QNNNLDGQIPDGLW 494
            NN +         
Sbjct: 71  NNNRICRIGEGLDQ 84

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 422 IGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
           + NL+ L  L+   NK+   I  + +L  L  +HL+NNQ     P  L+    L  + L 
Sbjct: 169 LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

Query: 482 N 482
           N
Sbjct: 226 N 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLEN 458
             + +L  L  + L  N++   +  +   + L  + L N
Sbjct: 189 SPLASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 406 SIDLKGFEISGTLPESIGNLTA--LKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEG 463
           ++DL G  +    P+  G L +  +   R   + +   + E  +   ++ + L N+  E 
Sbjct: 4   TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 464 -WIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
             +   LSQ   L+ + L+   L   I + L K
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 399 SKHTRVVSIDLKGFEISG------TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALE 452
            +   VV+ + +  E+ G       +  ++  L A KHL L  N +  +I  +  +  L 
Sbjct: 15  EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKISSLSGMENLR 73

Query: 453 TLHLENNQFEGW 464
            L L  N  +  
Sbjct: 74  ILSLGRNLIKKI 85

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 417 TLPESIG------NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLS 470
           T+P  I                L    +   + + + L +++ +   N+  +      + 
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNE-LNSIDQIIANNSDIKSVQG--IQ 65

Query: 471 QLPILREIFLQNNNLDGQIPDGLWKP 496
            LP + ++FL  N L    P    K 
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLANLKN 91

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 418 LPESIGNLTALKHLRLGGNKL----WGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQL 472
           +   +    ++K + L GN +       + E   +   LE     +        +    L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 473 PILREIFLQNNNL 485
            +L +  L+   L
Sbjct: 83  RLLLQALLKCPKL 95

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 436 NKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLD 486
           N L      +   L  L+TL L+ N     IP+      +L   FL  N   
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	501
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.12
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.11
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.11
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.04
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.02
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.88
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.85
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.61
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.4
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.39
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.31
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.14
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.81
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.75
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.22
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.59
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.39
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.97
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	94.02
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.08

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.68  E-value=2.2e-17  Score=162.63  Aligned_cols=135  Identities=34%  Similarity=0.621  Sum_probs=109.1

Q ss_pred             CcchhHHHHHHHHHhcCCCC--CCCC--CCCCCCCCCCcceeeecCC-CCeeEEEecCCCCcccc--cCcccccCCCCCC
Q 042915          357 TFPRDVVAMEELAKHFKNPP--IDWN--GDPCLPWENSWTGVTCNKS-KHTRVVSIDLKGFEISG--TLPESIGNLTALK  429 (501)
Q Consensus       357 t~~~d~~al~~~~~~~~~~~--~~W~--~d~C~~~~~~w~gv~c~~~-~l~~l~~L~Ls~n~l~g--~~p~~~~~L~~L~  429 (501)
                      |.++|.+||++||+.+..+.  .+|.  +|+|.   +.|.||.|+.. ...+|++|+|++|++.|  .+|+.+++|++|+
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~---~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~   79 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC---CcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccc
Confidence            67899999999999987643  3784  47773   46999999853 34589999999999987  5889999999999


Q ss_pred             eeecCC-CcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC
Q 042915          430 HLRLGG-NKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW  494 (501)
Q Consensus       430 ~L~Ls~-N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~  494 (501)
                      +|+|++ |+++|.+| ++++|++|++|+|++|++.+..|..+..+.+|+.+++++|.+.+.+|.++.
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            999997 89998887 589999999999999998877766666666666666666666666666555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=1.4e-12  Score=118.90  Aligned_cols=109  Identities=21%  Similarity=0.256  Sum_probs=91.8

Q ss_pred             CCcceeeecCCCC--------eeEEEecCCCCcccccC-cccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccC
Q 042915          389 NSWTGVTCNKSKH--------TRVVSIDLKGFEISGTL-PESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLEN  458 (501)
Q Consensus       389 ~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~-p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~  458 (501)
                      |.|..|.|+..++        .+++.|+|++|+|++.+ +..|.++++|+.|+|++|++.+.+++ +..+++|+.|+|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4688888975432        36789999999998644 56789999999999999999988884 78999999999999


Q ss_pred             CcCCccCccccCCCCCCCEEEccCCcCcccCCcc-CC-CCCC
Q 042915          459 NQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG-LW-KPGL  498 (501)
Q Consensus       459 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~-~~-~~~L  498 (501)
                      |+|++..|..|.++++|++|+|++|+|+ .||++ |. +++|
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L  128 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSL  128 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTC
T ss_pred             ccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCccc
Confidence            9999888888999999999999999999 56654 44 5554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=6.7e-11  Score=100.00  Aligned_cols=90  Identities=28%  Similarity=0.282  Sum_probs=77.5

Q ss_pred             CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccC-ccccCCCCCCC
Q 042915          398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWI-PQTLSQLPILR  476 (501)
Q Consensus       398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~-P~~~~~l~~L~  476 (501)
                      ...+.+|++|++++|+|+ .+|+.+..+++|+.|++++|+++.. |.+..+++|+.|++++|++.... ...++.+++|+
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-CccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            345678999999999998 6788899999999999999999864 67999999999999999998432 25788999999


Q ss_pred             EEEccCCcCcccCC
Q 042915          477 EIFLQNNNLDGQIP  490 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP  490 (501)
                      .|++++|+++ .++
T Consensus        94 ~L~l~~N~i~-~~~  106 (124)
T d1dcea3          94 LLNLQGNSLC-QEE  106 (124)
T ss_dssp             EEECTTSGGG-GSS
T ss_pred             EEECCCCcCC-cCc
Confidence            9999999998 344

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=4.9e-11  Score=100.86  Aligned_cols=89  Identities=30%  Similarity=0.436  Sum_probs=75.4

Q ss_pred             EEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCc
Q 042915          405 VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNN  484 (501)
Q Consensus       405 ~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~  484 (501)
                      +.|+|++|+|+ .++ .+..+++|++|++++|+++..++.++.+++|+.|++++|+++ .+| .++.+++|+.|++++|+
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            36899999998 555 489999999999999999977667999999999999999998 455 49999999999999999


Q ss_pred             CcccCCc--cCC-CCCC
Q 042915          485 LDGQIPD--GLW-KPGL  498 (501)
Q Consensus       485 l~g~lP~--~~~-~~~L  498 (501)
                      |+ .+|.  .+. +++|
T Consensus        77 i~-~~~~~~~l~~~~~L   92 (124)
T d1dcea3          77 LQ-QSAAIQPLVSCPRL   92 (124)
T ss_dssp             CC-SSSTTGGGGGCTTC
T ss_pred             cC-CCCCchhhcCCCCC
Confidence            98 5663  344 4544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=4.1e-11  Score=108.90  Aligned_cols=89  Identities=25%  Similarity=0.402  Sum_probs=82.5

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ..+++|+.|+|++|++.+..+..+..+++|++|+|++|+|+...++ |.++++|+.|+|++|+|++..|..|..+++|++
T Consensus        51 ~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  130 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             CCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc
Confidence            3467899999999999999999999999999999999999988885 899999999999999999888889999999999


Q ss_pred             EEccCCcCcc
Q 042915          478 IFLQNNNLDG  487 (501)
Q Consensus       478 L~Ls~N~l~g  487 (501)
                      |+|++|++.+
T Consensus       131 l~L~~N~~~~  140 (192)
T d1w8aa_         131 LNLASNPFNC  140 (192)
T ss_dssp             EECTTCCBCC
T ss_pred             cccccccccc
Confidence            9999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.04  E-value=5.5e-11  Score=116.02  Aligned_cols=88  Identities=30%  Similarity=0.403  Sum_probs=73.1

Q ss_pred             EEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCc
Q 042915          405 VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNN  484 (501)
Q Consensus       405 ~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~  484 (501)
                      ..++++++.+.+.+|..+..+++|+.|++++|.+.+.+|++..+++|+.|+|++|+++|.+|+.++++++|++|+|++|+
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            35778888888888888888888888888888888887778888888888888888888888888888888888888888


Q ss_pred             CcccCCcc
Q 042915          485 LDGQIPDG  492 (501)
Q Consensus       485 l~g~lP~~  492 (501)
                      |+|.||..
T Consensus       280 l~g~iP~~  287 (313)
T d1ogqa_         280 LCGEIPQG  287 (313)
T ss_dssp             EEEECCCS
T ss_pred             ccccCCCc
Confidence            88888853

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.4e-10  Score=102.73  Aligned_cols=88  Identities=23%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCc--cccCCCCCCC
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIP--QTLSQLPILR  476 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P--~~~~~l~~L~  476 (501)
                      .+.+|+.|+|++|+|+. ++ .+..+++|+.|++++|+++...+. +..+++|+.|+|++|++. .++  ..+..+++|+
T Consensus        39 ~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~  115 (162)
T d1a9na_          39 TLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLT  115 (162)
T ss_dssp             GTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred             ccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccc
Confidence            34567777777777773 33 467777777778887777766655 356777788888887776 333  3566777788


Q ss_pred             EEEccCCcCcccCCc
Q 042915          477 EIFLQNNNLDGQIPD  491 (501)
Q Consensus       477 ~L~Ls~N~l~g~lP~  491 (501)
                      +|++++|+++ .+|.
T Consensus       116 ~L~l~~N~i~-~~~~  129 (162)
T d1a9na_         116 YLCILRNPVT-NKKH  129 (162)
T ss_dssp             EEECCSSGGG-GSTT
T ss_pred             hhhcCCCccc-cccc
Confidence            8888888776 5553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.8e-10  Score=99.17  Aligned_cols=96  Identities=19%  Similarity=0.250  Sum_probs=78.4

Q ss_pred             CcceeeecC----------CCCeeEEEecCCCC-cccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEcc
Q 042915          390 SWTGVTCNK----------SKHTRVVSIDLKGF-EISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLE  457 (501)
Q Consensus       390 ~w~gv~c~~----------~~l~~l~~L~Ls~n-~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls  457 (501)
                      .++++.|..          ..+++|++|++++| .|+...+..|.+|++|+.|+|++|+|+.+.+. |..+++|+.|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            456677753          23458899999766 58877778899999999999999999988775 8999999999999


Q ss_pred             CCcCCccCccccCCCCCCCEEEccCCcCc
Q 042915          458 NNQFEGWIPQTLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       458 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  486 (501)
                      +|+|+ .+|.......+|+.|+|++|++.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            99999 56655545557999999999884

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.8e-10  Score=105.37  Aligned_cols=85  Identities=26%  Similarity=0.281  Sum_probs=48.1

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      +.++..|++++|.+.+..+..+..++.|+.|++++|++++.+++ +..+++|+.|+|++|+|+ .+|+.+..+++|+.|+
T Consensus       123 l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~  201 (266)
T d1p9ag_         123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF  201 (266)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred             ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEE
Confidence            44555555555555544445555555566666666665555543 455556666666666655 5555555555566666


Q ss_pred             ccCCcCc
Q 042915          480 LQNNNLD  486 (501)
Q Consensus       480 Ls~N~l~  486 (501)
                      |++|++.
T Consensus       202 L~~Np~~  208 (266)
T d1p9ag_         202 LHGNPWL  208 (266)
T ss_dssp             CCSCCBC
T ss_pred             ecCCCCC
Confidence            6655543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2e-09  Score=102.43  Aligned_cols=86  Identities=24%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN  482 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~  482 (501)
                      +++.|+|++|+|++..+..|.++++|++|+|++|+|+. +|.++.+++|+.|+|++|+++ ..|..+..+++|+.|++++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccccccccccccccccccccc-ccccccccccccccccccc
Confidence            57888888888887666778888888888888888874 455677888888888888887 4566777778888888887


Q ss_pred             CcCcccCCc
Q 042915          483 NNLDGQIPD  491 (501)
Q Consensus       483 N~l~g~lP~  491 (501)
                      |.+. .++.
T Consensus       110 ~~~~-~~~~  117 (266)
T d1p9ag_         110 NRLT-SLPL  117 (266)
T ss_dssp             SCCC-CCCS
T ss_pred             cccc-eeec
Confidence            7776 3443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.3e-10  Score=98.32  Aligned_cols=95  Identities=25%  Similarity=0.317  Sum_probs=77.7

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      ..++++|+|++|+|+ .++..+..+++|+.|+|++|+++.. +.+..+++|+.|+|++|+++...+..+..+++|+.|+|
T Consensus        17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            457899999999998 4577678899999999999999854 67889999999999999998555555678999999999


Q ss_pred             cCCcCcccCCc--cCC-CCCC
Q 042915          481 QNNNLDGQIPD--GLW-KPGL  498 (501)
Q Consensus       481 s~N~l~g~lP~--~~~-~~~L  498 (501)
                      ++|+|+ .+++  .+. +++|
T Consensus        95 ~~N~i~-~~~~l~~l~~l~~L  114 (162)
T d1a9na_          95 TNNSLV-ELGDLDPLASLKSL  114 (162)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTC
T ss_pred             cccccc-cccccccccccccc
Confidence            999998 5664  333 4444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.6e-09  Score=104.06  Aligned_cols=88  Identities=24%  Similarity=0.249  Sum_probs=65.2

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      .+.+++.|+|++|++++..+..|.++++|+.|++++|++++..| .|..+++|+.|++++|++.+..|..|+.+++|+.|
T Consensus       151 ~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             cccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence            44567777777777777667777777777777777777777766 36777777777777777776666777777777777


Q ss_pred             EccCCcCcc
Q 042915          479 FLQNNNLDG  487 (501)
Q Consensus       479 ~Ls~N~l~g  487 (501)
                      +|++|++.+
T Consensus       231 ~l~~N~l~C  239 (284)
T d1ozna_         231 RLNDNPWVC  239 (284)
T ss_dssp             ECCSSCEEC
T ss_pred             EecCCCCCC
Confidence            777777764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=6.1e-09  Score=91.21  Aligned_cols=87  Identities=14%  Similarity=0.107  Sum_probs=76.7

Q ss_pred             EecCCCCcccccCcccccCCCCCCeeecCCCc-CCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCC
Q 042915          406 SIDLKGFEISGTLPESIGNLTALKHLRLGGNK-LWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN  483 (501)
Q Consensus       406 ~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N  483 (501)
                      .++.+++++. ..|..+..+++|+.|++++|+ ++...+ .|.++++|+.|+|++|+|+...|..|..+++|+.|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            4788888887 567789999999999998764 887766 4899999999999999999877889999999999999999


Q ss_pred             cCcccCCccCC
Q 042915          484 NLDGQIPDGLW  494 (501)
Q Consensus       484 ~l~g~lP~~~~  494 (501)
                      +|+ .+|.+.+
T Consensus        91 ~l~-~l~~~~~  100 (156)
T d2ifga3          91 ALE-SLSWKTV  100 (156)
T ss_dssp             CCS-CCCSTTT
T ss_pred             CCc-ccChhhh
Confidence            999 8988765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.2e-09  Score=98.51  Aligned_cols=100  Identities=22%  Similarity=0.288  Sum_probs=86.7

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE  477 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~  477 (501)
                      ....+|+.+++++|+|++..+..|..+++|+.|++++|++++..+. +.++++|+.+++++|++.+..|..|..+++|++
T Consensus       126 ~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             chhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccc
Confidence            3456789999999999977788899999999999999999988774 799999999999999999989999999999999


Q ss_pred             EEccCCcCcccCCccCC-CCCC
Q 042915          478 IFLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       478 L~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      |++++|++.+..|..+. +++|
T Consensus       206 L~l~~N~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         206 LYLFANNLSALPTEALAPLRAL  227 (284)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTC
T ss_pred             cccccccccccccccccccccc
Confidence            99999999954445554 4444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.75  E-value=5.5e-09  Score=100.94  Aligned_cols=97  Identities=18%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCcc------ccC
Q 042915          397 NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ------TLS  470 (501)
Q Consensus       397 ~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~------~~~  470 (501)
                      ....+..++.|++++|++.+..+..+.++++|++|+|++|+|+..++.+..+++|+.|+|++|+|+..-..      ...
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~  269 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT  269 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred             HhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhc
Confidence            34456677888888888888778888888888888888888886655688888888888888888743222      234


Q ss_pred             CCCCCCEEEccCCcCc-ccCCccC
Q 042915          471 QLPILREIFLQNNNLD-GQIPDGL  493 (501)
Q Consensus       471 ~l~~L~~L~Ls~N~l~-g~lP~~~  493 (501)
                      .+.+|+.|+|++|++. +.+|+..
T Consensus       270 ~~~~L~~L~L~~N~~~~~~~~~~~  293 (305)
T d1xkua_         270 KKASYSGVSLFSNPVQYWEIQPST  293 (305)
T ss_dssp             TSCCCSEEECCSSSSCGGGSCGGG
T ss_pred             ccCCCCEEECCCCcCccCcCCHhH
Confidence            5677888888888874 4565543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.61  E-value=3.6e-08  Score=95.06  Aligned_cols=91  Identities=24%  Similarity=0.340  Sum_probs=83.1

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      +++++.|++++|.+.+..+..+.+++.++.|++++|.+.+..+. +.++++|+.|+|++|+|+ .+|..+..+++|++|+
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  248 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence            45788999999999999999999999999999999999988774 789999999999999998 7899999999999999


Q ss_pred             ccCCcCcccCCccC
Q 042915          480 LQNNNLDGQIPDGL  493 (501)
Q Consensus       480 Ls~N~l~g~lP~~~  493 (501)
                      |++|+|+ .|+...
T Consensus       249 Ls~N~i~-~i~~~~  261 (305)
T d1xkua_         249 LHNNNIS-AIGSND  261 (305)
T ss_dssp             CCSSCCC-CCCTTS
T ss_pred             CCCCccC-ccChhh
Confidence            9999999 787643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=3.9e-08  Score=97.12  Aligned_cols=78  Identities=23%  Similarity=0.312  Sum_probs=55.5

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      +.+++.|++++|++++..  .+..+++|+.|++++|++++ ++.++++++|++|+|++|++++..|  +.++++|+.|+|
T Consensus       306 ~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L  380 (384)
T d2omza2         306 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  380 (384)
T ss_dssp             CTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEC
T ss_pred             hcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeC
Confidence            346667777777777542  26777778888888877764 4467777778888888777775443  777777888877


Q ss_pred             cCC
Q 042915          481 QNN  483 (501)
Q Consensus       481 s~N  483 (501)
                      ++|
T Consensus       381 ~~N  383 (384)
T d2omza2         381 NDQ  383 (384)
T ss_dssp             CCE
T ss_pred             CCC
Confidence            776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=4.5e-08  Score=90.96  Aligned_cols=102  Identities=18%  Similarity=0.322  Sum_probs=84.3

Q ss_pred             CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc--CCCCCCCCCEEEccC
Q 042915          389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTALETLHLEN  458 (501)
Q Consensus       389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~Ls~  458 (501)
                      |....+.|...+        ..++++|+|++|+|+...+..|.++++|++|++++|.+...++  .|..++.++.|.+..
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            566778886432        2368999999999997666789999999999999999987665  378899999999764


Q ss_pred             -CcCCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915          459 -NQFEGWIPQTLSQLPILREIFLQNNNLDGQIPD  491 (501)
Q Consensus       459 -N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~  491 (501)
                       |++....+..|..+++|++|++++|.+. .+|.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~  120 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD  120 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC-SCCC
T ss_pred             cccccccccccccccccccccccchhhhc-cccc
Confidence             6788777888999999999999999998 4554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.45  E-value=1.5e-07  Score=85.05  Aligned_cols=94  Identities=26%  Similarity=0.395  Sum_probs=77.0

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ..+++|+.|++++|.+...  +.+..+++|+.|++++|++.. ++.+..+++|+.|++++|++++ ++ .++++++|+.|
T Consensus       103 ~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L  177 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERL  177 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEE
T ss_pred             ccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cccccccccccccccccccccC-Cc-cccCCCCCCEE
Confidence            3567888999999988743  347889999999999999874 5668899999999999999985 44 48999999999


Q ss_pred             EccCCcCcccCCccCC-CCCCc
Q 042915          479 FLQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                      +|++|+++ .+| .+. +++|+
T Consensus       178 ~ls~N~i~-~i~-~l~~L~~L~  197 (199)
T d2omxa2         178 DISSNKVS-DIS-VLAKLTNLE  197 (199)
T ss_dssp             ECCSSCCC-CCG-GGGGCTTCS
T ss_pred             ECCCCCCC-CCc-cccCCCCCC
Confidence            99999998 676 344 66654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.44  E-value=1.4e-07  Score=86.08  Aligned_cols=82  Identities=30%  Similarity=0.459  Sum_probs=63.2

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      .+++|++|+|++|++++ ++ .+..|++|+.|++++|++++ ++.+..+++|+.|++++|.+. .+ ..+..++.|+.++
T Consensus        66 ~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~  140 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY  140 (210)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEE
T ss_pred             hCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-ccccccccccccccccccccc-cc-ccccccccccccc
Confidence            35678888888888875 33 36788888888888888875 456778888888888888876 33 3577788888888


Q ss_pred             ccCCcCc
Q 042915          480 LQNNNLD  486 (501)
Q Consensus       480 Ls~N~l~  486 (501)
                      +++|.++
T Consensus       141 ~~~n~l~  147 (210)
T d1h6ta2         141 LGNNKIT  147 (210)
T ss_dssp             CCSSCCC
T ss_pred             ccccccc
Confidence            8888887

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.40  E-value=2.8e-07  Score=83.28  Aligned_cols=93  Identities=29%  Similarity=0.384  Sum_probs=64.5

Q ss_pred             CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      .++++|+.|++++|.+.. ++ .+.+++.|+.|++++|.+.. ++.+..+++|+.|++++|++. .++ .+..+++|+.|
T Consensus        81 ~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L  155 (199)
T d2omxa2          81 KNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQL  155 (199)
T ss_dssp             TTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred             cCCccccccccccccccc-cc-cccccccccccccccccccc-ccccchhhhhHHhhhhhhhhc-ccc-ccccccccccc
Confidence            355677777777777653 33 36777777777777777664 334677888888888888886 343 57788888888


Q ss_pred             EccCCcCcccCCccCC-CCCC
Q 042915          479 FLQNNNLDGQIPDGLW-KPGL  498 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~~~-~~~L  498 (501)
                      ++++|+++ .++. +. +++|
T Consensus       156 ~l~~n~l~-~l~~-l~~l~~L  174 (199)
T d2omxa2         156 NFSSNQVT-DLKP-LANLTTL  174 (199)
T ss_dssp             ECCSSCCC-CCGG-GTTCTTC
T ss_pred             cccccccc-CCcc-ccCCCCC
Confidence            88888887 4553 33 4444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.39  E-value=3.4e-07  Score=83.50  Aligned_cols=93  Identities=31%  Similarity=0.470  Sum_probs=63.0

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      .+++|+.|++++|.+.. + +.+..++.|+.+++++|.++. ++.+..+++|+.+++++|++++ ++ .+.++++|+.|+
T Consensus       110 ~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~  184 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLY  184 (210)
T ss_dssp             TCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEE
T ss_pred             ccccccccccccccccc-c-ccccccccccccccccccccc-cccccccccccccccccccccc-cc-cccCCCCCCEEE
Confidence            34567777777777652 2 346677777777777777764 3345667788888888888874 33 277788888888


Q ss_pred             ccCCcCcccCCccCC-CCCCc
Q 042915          480 LQNNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       480 Ls~N~l~g~lP~~~~-~~~L~  499 (501)
                      |++|+|+ .+|. +. +++|+
T Consensus       185 Ls~N~i~-~l~~-l~~l~~L~  203 (210)
T d1h6ta2         185 LSKNHIS-DLRA-LAGLKNLD  203 (210)
T ss_dssp             CCSSCCC-BCGG-GTTCTTCS
T ss_pred             CCCCCCC-CChh-hcCCCCCC
Confidence            8888887 5763 44 55553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.32  E-value=3.9e-07  Score=89.70  Aligned_cols=86  Identities=24%  Similarity=0.383  Sum_probs=72.5

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF  479 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~  479 (501)
                      .+.+|++|++++++|+. + +.+..|++|++|+|++|+|++.. .++++++|++|+|++|++.+ ++ .++.+++|+.|+
T Consensus        42 ~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~L~  116 (384)
T d2omza2          42 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  116 (384)
T ss_dssp             HHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEE
T ss_pred             HhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccc-cc-cccccccccccc
Confidence            34578999999999984 4 45889999999999999998754 59999999999999999985 44 388999999999


Q ss_pred             ccCCcCcccCCc
Q 042915          480 LQNNNLDGQIPD  491 (501)
Q Consensus       480 Ls~N~l~g~lP~  491 (501)
                      +++|.+++ ++.
T Consensus       117 ~~~~~~~~-~~~  127 (384)
T d2omza2         117 LFNNQITD-IDP  127 (384)
T ss_dssp             CCSSCCCC-CGG
T ss_pred             cccccccc-ccc
Confidence            99999984 443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=2.3e-07  Score=85.41  Aligned_cols=74  Identities=24%  Similarity=0.365  Sum_probs=38.9

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      +++.|++++|.+....  .+.++++|+.|+|++|++++ ++.++++++|++|+|++|++++ +|. ++++++|+.|+|+
T Consensus       152 ~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEE
T ss_pred             ccccccccccccccch--hhcccccceecccCCCccCC-ChhhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEee
Confidence            4555555555554221  25555555666665555553 2335555555666666555552 332 5555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.29  E-value=6e-07  Score=82.53  Aligned_cols=91  Identities=25%  Similarity=0.401  Sum_probs=72.6

Q ss_pred             eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915          402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ  481 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls  481 (501)
                      ..+..+.++++.+...  ..+.++++|+.|++++|++... +.++++++|+.|+|++|++++ +|. ++.+++|++|+|+
T Consensus       129 ~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLK  203 (227)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECT
T ss_pred             cchhhhhchhhhhchh--hhhccccccccccccccccccc-hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECc
Confidence            4566778888887643  3378889999999999998754 448899999999999999984 554 8899999999999


Q ss_pred             CCcCcccCCccCC-CCCCc
Q 042915          482 NNNLDGQIPDGLW-KPGLN  499 (501)
Q Consensus       482 ~N~l~g~lP~~~~-~~~L~  499 (501)
                      +|+|+ .+|+ +. +++|+
T Consensus       204 ~N~lt-~i~~-l~~l~~L~  220 (227)
T d1h6ua2         204 NNQIS-DVSP-LANTSNLF  220 (227)
T ss_dssp             TSCCC-BCGG-GTTCTTCC
T ss_pred             CCcCC-CCcc-cccCCCCC
Confidence            99999 6774 44 55543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.29  E-value=3.1e-09  Score=96.90  Aligned_cols=84  Identities=23%  Similarity=0.292  Sum_probs=47.4

Q ss_pred             CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc----------------------CCCCCCCCCEEEcc
Q 042915          400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP----------------------EMKTLTALETLHLE  457 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p----------------------~~~~l~~L~~L~Ls  457 (501)
                      .+.+|+.|+|++|+|+ .++ .+.+|++|+.|+|++|+++...+                      .+..+++|+.|+|+
T Consensus        46 ~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          46 TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS  123 (198)
T ss_dssp             HTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEES
T ss_pred             cccccceeECcccCCC-Ccc-cccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3455666666666665 333 35666666666666666653321                      23334556666666


Q ss_pred             CCcCCccCc--cccCCCCCCCEEEccCCcCc
Q 042915          458 NNQFEGWIP--QTLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       458 ~N~l~g~~P--~~~~~l~~L~~L~Ls~N~l~  486 (501)
                      +|+++ .++  ..+..+++|+.|+|++|++.
T Consensus       124 ~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         124 NNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cchhc-cccccccccCCCccceeecCCCccc
Confidence            66665 222  34566666666666666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.14  E-value=1.1e-08  Score=93.07  Aligned_cols=82  Identities=22%  Similarity=0.265  Sum_probs=64.7

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc--CCCCCCCCCEEEccCCcCCccCccc----------
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTALETLHLENNQFEGWIPQT----------  468 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~Ls~N~l~g~~P~~----------  468 (501)
                      +++|+.|++++|+|+. ++ .+..+++|+.|++++|+++....  .+..+++|+.|+|++|.+....+..          
T Consensus        92 ~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~v  169 (198)
T d1m9la_          92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHH
T ss_pred             cccccccccccccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHH
Confidence            3578999999999984 33 48889999999999999986543  4789999999999999987544432          


Q ss_pred             cCCCCCCCEEEccCCcCc
Q 042915          469 LSQLPILREIFLQNNNLD  486 (501)
Q Consensus       469 ~~~l~~L~~L~Ls~N~l~  486 (501)
                      +..+++|+.||  +..++
T Consensus       170 i~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         170 VKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHCSSCCEES--SGGGT
T ss_pred             HHHCCCcCEeC--CccCC
Confidence            56789999876  44444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.88  E-value=1.4e-05  Score=76.85  Aligned_cols=83  Identities=30%  Similarity=0.392  Sum_probs=62.3

Q ss_pred             CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915          401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL  480 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L  480 (501)
                      +++|+.|+|++|+|+ .+|..   +.+|+.|++++|+++.. +++  .+.|++|+|++|.+. .+|. ++.+++|+.|++
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SDL--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CSC--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hhh--ccccccccccccccc-cccc-hhhhccceeecc
Confidence            357788889988888 66764   35788888888888743 332  246899999999988 5664 678899999999


Q ss_pred             cCCcCcccCCccC
Q 042915          481 QNNNLDGQIPDGL  493 (501)
Q Consensus       481 s~N~l~g~lP~~~  493 (501)
                      ++|.+. ..|...
T Consensus       128 ~~~~~~-~~~~~~  139 (353)
T d1jl5a_         128 DNNSLK-KLPDLP  139 (353)
T ss_dssp             CSSCCS-CCCCCC
T ss_pred             cccccc-cccccc
Confidence            999887 455443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.81  E-value=1.8e-05  Score=75.96  Aligned_cols=84  Identities=26%  Similarity=0.398  Sum_probs=57.5

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN  482 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~  482 (501)
                      +++.|+|++++|+ .+|+.   +++|++|+|++|+|+.. |+.  +.+|+.|++++|+++ .++..   .+.|++|++++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~l-p~~--~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTEL-PEL--PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSC-CCC--CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCS
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCccc-ccc--hhhhhhhhhhhcccc-hhhhh---ccccccccccc
Confidence            4667888888887 56653   46788888888888744 432  457888888888887 44431   14588888888


Q ss_pred             CcCcccCCccCCCCCC
Q 042915          483 NNLDGQIPDGLWKPGL  498 (501)
Q Consensus       483 N~l~g~lP~~~~~~~L  498 (501)
                      |.+. .+|....++.|
T Consensus       108 n~l~-~lp~~~~l~~L  122 (353)
T d1jl5a_         108 NQLE-KLPELQNSSFL  122 (353)
T ss_dssp             SCCS-SCCCCTTCTTC
T ss_pred             cccc-cccchhhhccc
Confidence            8887 67753224443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.5e-05  Score=71.60  Aligned_cols=75  Identities=19%  Similarity=0.059  Sum_probs=35.7

Q ss_pred             eEEEecCCCCcccccCcccccCCCCCCee-ecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          403 RVVSIDLKGFEISGTLPESIGNLTALKHL-RLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L-~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      .++.|++++|+++...+. .....+++.+ ++++|+++...+. |.++++|+.|+|++|+++...+..|.++++|+.|
T Consensus       154 ~l~~L~l~~n~l~~i~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             SCEEEECCSSCCCEECTT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             cceeeecccccccccccc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            455556666666533232 2233333333 3455555544332 4556666666666666653222234444444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2e-06  Score=75.03  Aligned_cols=78  Identities=21%  Similarity=0.265  Sum_probs=46.7

Q ss_pred             eeEEEecCCCCccccc--CcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCcc-------ccCC
Q 042915          402 TRVVSIDLKGFEISGT--LPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQ-------TLSQ  471 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~--~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~-------~~~~  471 (501)
                      ++|+.|+|++|+|+..  ++..+..+++|+.|+|++|+++...+ .......|+.|+|++|.+......       .+..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            4566777777777643  23445667777777777777765433 222334577777777777654332       2455


Q ss_pred             CCCCCEEE
Q 042915          472 LPILREIF  479 (501)
Q Consensus       472 l~~L~~L~  479 (501)
                      +++|+.||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            67777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=4.7e-06  Score=72.57  Aligned_cols=73  Identities=23%  Similarity=0.294  Sum_probs=56.4

Q ss_pred             cCcccccCCCCCCeeecCCCcCCCCCc--C-CCCCCCCCEEEccCCcCCccCcc-ccCCCCCCCEEEccCCcCcccCC
Q 042915          417 TLPESIGNLTALKHLRLGGNKLWGQIP--E-MKTLTALETLHLENNQFEGWIPQ-TLSQLPILREIFLQNNNLDGQIP  490 (501)
Q Consensus       417 ~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~-~~~l~~L~~L~Ls~N~l~g~~P~-~~~~l~~L~~L~Ls~N~l~g~lP  490 (501)
                      .++.....++.|++|+|++|+|+...+  . +..+++|+.|+|++|+++. +++ ......+|+.|+|++|+++....
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcc
Confidence            444455679999999999999987543  2 5779999999999999984 443 33345579999999999985433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=3e-05  Score=77.00  Aligned_cols=84  Identities=24%  Similarity=0.357  Sum_probs=62.1

Q ss_pred             eEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCC----Cc-CC-CCCCCCCEEEccCCcCCcc----Cccc
Q 042915          403 RVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQ----IP-EM-KTLTALETLHLENNQFEGW----IPQT  468 (501)
Q Consensus       403 ~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~----~p-~~-~~l~~L~~L~Ls~N~l~g~----~P~~  468 (501)
                      +++.|+|++|+++-    .+...+..+++|+.|+|++|+++..    +. .+ ....+|+.|+|++|+++..    +++.
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~  107 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  107 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence            45678888888762    3455677889999999999988521    11 12 2335799999999998743    4667


Q ss_pred             cCCCCCCCEEEccCCcCc
Q 042915          469 LSQLPILREIFLQNNNLD  486 (501)
Q Consensus       469 ~~~l~~L~~L~Ls~N~l~  486 (501)
                      +..+++|++|+|++|.++
T Consensus       108 l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTSCTTCCEEECCSSBCH
T ss_pred             hhccccccccccccccch
Confidence            888899999999999876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=6e-05  Score=74.73  Aligned_cols=86  Identities=26%  Similarity=0.303  Sum_probs=64.8

Q ss_pred             eeEEEecCCCCccccc-CcccccCCCCCCeeecCCCcCCCC----Cc-CCCCCCCCCEEEccCCcCCc----cCccccCC
Q 042915          402 TRVVSIDLKGFEISGT-LPESIGNLTALKHLRLGGNKLWGQ----IP-EMKTLTALETLHLENNQFEG----WIPQTLSQ  471 (501)
Q Consensus       402 ~~l~~L~Ls~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~~~----~p-~~~~l~~L~~L~Ls~N~l~g----~~P~~~~~  471 (501)
                      .+|+.|+++.|+++.. +...+..+++|+.|+|++|.++..    +. .+..+++|+.|+|++|+++.    .+.+.+..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4799999999999853 244467789999999999998732    22 25788999999999999852    12333332


Q ss_pred             -CCCCCEEEccCCcCcc
Q 042915          472 -LPILREIFLQNNNLDG  487 (501)
Q Consensus       472 -l~~L~~L~Ls~N~l~g  487 (501)
                       ..+|+.|+|++|.++.
T Consensus        82 ~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TTCCCCEEECTTSCCBG
T ss_pred             CCCCCCEEECCCCCccc
Confidence             3579999999999873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.59  E-value=0.00025  Score=68.47  Aligned_cols=86  Identities=20%  Similarity=0.225  Sum_probs=57.2

Q ss_pred             CeeEEEecCCCCccccc----CcccccCCCCCCeeecCCCcCCCCCc-C----C--CCCCCCCEEEccCCcCCcc----C
Q 042915          401 HTRVVSIDLKGFEISGT----LPESIGNLTALKHLRLGGNKLWGQIP-E----M--KTLTALETLHLENNQFEGW----I  465 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~~~~p-~----~--~~l~~L~~L~Ls~N~l~g~----~  465 (501)
                      .++|+.|+|++|.++..    +...+..+++|++|+|++|.++..-. .    +  ...+.|+.|+|++|++...    +
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l  293 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  293 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHH
Confidence            45677888888887532    44556777888888888888764311 1    2  2345688888888887632    2


Q ss_pred             ccccC-CCCCCCEEEccCCcCc
Q 042915          466 PQTLS-QLPILREIFLQNNNLD  486 (501)
Q Consensus       466 P~~~~-~l~~L~~L~Ls~N~l~  486 (501)
                      ...+. ++++|+.|+|++|++.
T Consensus       294 ~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         294 KTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHccCCCCCEEECCCCcCC
Confidence            33332 4677888888888886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.46  E-value=0.00039  Score=60.24  Aligned_cols=15  Identities=27%  Similarity=0.235  Sum_probs=7.1

Q ss_pred             CCCCCeeecCCCcCC
Q 042915          425 LTALKHLRLGGNKLW  439 (501)
Q Consensus       425 L~~L~~L~Ls~N~l~  439 (501)
                      .+.|+.|+|++|.++
T Consensus        71 n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          71 SPSLRVLNVESNFLT   85 (167)
T ss_dssp             CSSCCEEECCSSBCC
T ss_pred             cccccceeeehhhcc
Confidence            344445555544443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.00046  Score=65.00  Aligned_cols=90  Identities=18%  Similarity=0.205  Sum_probs=44.1

Q ss_pred             eeEEEecCCCC-cccccCcccccCCCCCCeeecCCC-cCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915          402 TRVVSIDLKGF-EISGTLPESIGNLTALKHLRLGGN-KLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI  478 (501)
Q Consensus       402 ~~l~~L~Ls~n-~l~g~~p~~~~~L~~L~~L~Ls~N-~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L  478 (501)
                      ++|++|+|++| .++......+.++++|++|+|+++ .++.... .++++++|+.|+++++--.+.++.....+++|+  
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~--  252 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ--  252 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE--
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc--
Confidence            45666666654 355445555566666666666663 3433222 345566666666665522222222222334433  


Q ss_pred             EccCCcCcccCCccCC
Q 042915          479 FLQNNNLDGQIPDGLW  494 (501)
Q Consensus       479 ~Ls~N~l~g~lP~~~~  494 (501)
                       +..++++...++.++
T Consensus       253 -i~~~~ls~~~~~~~~  267 (284)
T d2astb2         253 -INCSHFTTIARPTIG  267 (284)
T ss_dssp             -ESCCCSCCTTCSSCS
T ss_pred             -ccCccCCCCCCCccC
Confidence             355556544444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0013  Score=61.71  Aligned_cols=82  Identities=20%  Similarity=0.284  Sum_probs=62.9

Q ss_pred             eeEEEecCCCCc--ccc-cCcccccCCCCCCeeecCCCc-CCCCC-cCCCCCCCCCEEEccCC-cCCccCccccCCCCCC
Q 042915          402 TRVVSIDLKGFE--ISG-TLPESIGNLTALKHLRLGGNK-LWGQI-PEMKTLTALETLHLENN-QFEGWIPQTLSQLPIL  475 (501)
Q Consensus       402 ~~l~~L~Ls~n~--l~g-~~p~~~~~L~~L~~L~Ls~N~-l~~~~-p~~~~l~~L~~L~Ls~N-~l~g~~P~~~~~l~~L  475 (501)
                      ++|+.|+++++.  ++. .+.....++++|++|++++|. ++... ..+.++++|++|+|++| .++......++++++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            468888998753  332 233445678999999999864 66443 46788999999999995 6776666778899999


Q ss_pred             CEEEccCC
Q 042915          476 REIFLQNN  483 (501)
Q Consensus       476 ~~L~Ls~N  483 (501)
                      +.|+++++
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            99999887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.31  E-value=0.00046  Score=66.52  Aligned_cols=87  Identities=21%  Similarity=0.196  Sum_probs=65.9

Q ss_pred             CeeEEEecCCCCcccc-----cCcccccCCCCCCeeecCCCcCCCC----C-cCCCCCCCCCEEEccCCcCCccCc----
Q 042915          401 HTRVVSIDLKGFEISG-----TLPESIGNLTALKHLRLGGNKLWGQ----I-PEMKTLTALETLHLENNQFEGWIP----  466 (501)
Q Consensus       401 l~~l~~L~Ls~n~l~g-----~~p~~~~~L~~L~~L~Ls~N~l~~~----~-p~~~~l~~L~~L~Ls~N~l~g~~P----  466 (501)
                      ...++.|+|++|++..     .+...+..+++|+.|+|++|.++..    + ..+..+++|+.|+|++|.+.+.-.    
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            3478899999999863     2455678899999999999998542    1 236788999999999999975422    


Q ss_pred             cccCC--CCCCCEEEccCCcCcc
Q 042915          467 QTLSQ--LPILREIFLQNNNLDG  487 (501)
Q Consensus       467 ~~~~~--l~~L~~L~Ls~N~l~g  487 (501)
                      +.+..  ...|++|+|++|+|..
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHhhhccCCCCCEEECCCCcCCh
Confidence            23333  3679999999999863

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.97  E-value=0.0031  Score=54.16  Aligned_cols=85  Identities=15%  Similarity=0.196  Sum_probs=63.2

Q ss_pred             eeEEEecCCCC-ccccc----CcccccCCCCCCeeecCCCcCCCCCc-C----CCCCCCCCEEEccCCcCCcc----Ccc
Q 042915          402 TRVVSIDLKGF-EISGT----LPESIGNLTALKHLRLGGNKLWGQIP-E----MKTLTALETLHLENNQFEGW----IPQ  467 (501)
Q Consensus       402 ~~l~~L~Ls~n-~l~g~----~p~~~~~L~~L~~L~Ls~N~l~~~~p-~----~~~l~~L~~L~Ls~N~l~g~----~P~  467 (501)
                      ++|++|+|+++ .+...    +-..+...+.|+.|+|++|.+...-. .    +...+.|+.|+|++|.+...    +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            57899999974 45421    33456777899999999999864211 1    35678899999999998742    234


Q ss_pred             ccCCCCCCCEEEccCCcCc
Q 042915          468 TLSQLPILREIFLQNNNLD  486 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls~N~l~  486 (501)
                      .+...++|++|+|++|.+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSC
T ss_pred             HHHhCCcCCEEECCCCcCC
Confidence            5777789999999998765

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=94.02  E-value=0.88  Score=37.36  Aligned_cols=81  Identities=14%  Similarity=0.204  Sum_probs=54.2

Q ss_pred             ceeEEeeccCCCeEEEEEEeeccCCCCCCCCCceEEEEcCeEEEEEEccccccCCcceEEEEEEEecCCceEEEEeecCC
Q 042915           83 KYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNND  162 (501)
Q Consensus        83 ~~cY~~~~~~~~~ylvR~~F~~~~yd~~~~~~~F~v~~~~~~~~~v~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~~~~  162 (501)
                      ...|++++ +.|.|-|+++|-  +      .-..++.+.+-. ...+.     ......+.+.+.++++.|.|-|+....
T Consensus        64 ~~~f~v~v-PnG~Y~Vtv~~G--d------~~~~~~~~eg~~-~~~~~-----~g~~~~~~~~V~VtDG~L~l~ft~~~~  128 (146)
T d2o14a1          64 NNTFNVDL-PNGLYEVKVTLG--N------TARASVAAEGVF-QVINM-----TGDGAEDTFQIPVTDGQLNLLVTEGKA  128 (146)
T ss_dssp             SCCEEEEC-CSEEEEEEEEES--S------CSEEEEEETTEE-EEEEE-----ESTTCEEEEEEEECSSEEEEEEEESST
T ss_pred             CceEEEEC-CCCeEEEEEEEe--c------CCCccEEEeeEE-ecccc-----CCccEEEEEEEEEECCeEEEEEecCCC
Confidence            35678776 468999999984  2      113456654421 11111     112456788889999999999986654


Q ss_pred             CCCCceeeeEEeeecCC
Q 042915          163 TTSHPFISAIELSKLDD  179 (501)
Q Consensus       163 ~~~~pFIn~iEl~~l~~  179 (501)
                      + ..|=||+|||.+.+|
T Consensus       129 G-~~~~in~l~I~~~~d  144 (146)
T d2o14a1         129 G-TAFTLSALKIKKLSD  144 (146)
T ss_dssp             T-SCCEEEEEEEEEEES
T ss_pred             C-CccEEEEEEEEeccc
Confidence            3 279999999998765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.56  E-value=0.011  Score=50.29  Aligned_cols=86  Identities=19%  Similarity=0.186  Sum_probs=52.6

Q ss_pred             CCeeEEEecCCCCccccc----CcccccCCCCCCeeecCCCcCCCCC-----cCCCCCCCCCEEEc--cCCcCCc----c
Q 042915          400 KHTRVVSIDLKGFEISGT----LPESIGNLTALKHLRLGGNKLWGQI-----PEMKTLTALETLHL--ENNQFEG----W  464 (501)
Q Consensus       400 ~l~~l~~L~Ls~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~~~~-----p~~~~l~~L~~L~L--s~N~l~g----~  464 (501)
                      ..++|++|+|++|.+...    +...+...++|+.|++++|.+...-     ..+...++|+.++|  +.|.+..    .
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            345677888888877532    3344556677888888887775321     12456677776554  4555642    2


Q ss_pred             CccccCCCCCCCEEEccCCcC
Q 042915          465 IPQTLSQLPILREIFLQNNNL  485 (501)
Q Consensus       465 ~P~~~~~l~~L~~L~Ls~N~l  485 (501)
                      +...+...++|+.|+++.+..
T Consensus       124 La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeCcCCCC
Confidence            334455667788888776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.08  E-value=0.017  Score=49.10  Aligned_cols=85  Identities=19%  Similarity=0.300  Sum_probs=60.0

Q ss_pred             eeEEEecCCC-Ccccc----cCcccccCCCCCCeeecCCCcCCCCCc-C----CCCCCCCCEEEccCCcCCcc----Ccc
Q 042915          402 TRVVSIDLKG-FEISG----TLPESIGNLTALKHLRLGGNKLWGQIP-E----MKTLTALETLHLENNQFEGW----IPQ  467 (501)
Q Consensus       402 ~~l~~L~Ls~-n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~----~~~l~~L~~L~Ls~N~l~g~----~P~  467 (501)
                      ++|++|+|++ +.++.    .+-..+...++|+.|+|++|.++..-- .    +...+.|+.|++++|.+...    +-.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            5778889987 45642    234456678899999999998864321 1    45678999999999988642    335


Q ss_pred             ccCCCCCCCEEEcc--CCcCc
Q 042915          468 TLSQLPILREIFLQ--NNNLD  486 (501)
Q Consensus       468 ~~~~l~~L~~L~Ls--~N~l~  486 (501)
                      .+...++|+.++|+  +|.+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHhCccccEEeeccCCCcCc
Confidence            66777889886664  56663