Citrus Sinensis ID: 042916

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MAKLLLLHLLAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASNSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPADEVASPIGSPQAQPSATGTPLPVQPSSKSNKPSANIPTSSGISSYGRSNSVVVAFVSFMASYLLWMVQA
cHHHHHHHHHHHHHHHHHccEEEEEEcccccccccccccccccccEEEEccEEEEEEcccccEEEEcHHHcccccccccccccccccEEEEEcccccEEEEEccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccHHHHHcccEEEEccEEEEEEcccccEEEEcHHHHHHcccccccEEccccccEEEEcccccEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHc
MAKLLLLHLLAVLSIALTSHaaqyfvgdtsgwdissnldtwpddkvfkvGDVLVFSYSasnsvtevtkqnfdtcnisnplktysngnttvtlsapgdryfvsgnrlycfggmklhvhvpadevaspigspqaqpsatgtplpvqpssksnkpsaniptssgissygrsNSVVVAFVSFMASYLLWMVQA
MAKLLLLHLLAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSAsnsvtevtkqnfdtcnisnplktysngnTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPADEVASPIGSPQAQPSATGTPLPVQpssksnkpsaniptssgissygrSNSVVVAFVSFMASYLLWMVQA
MakllllhllavlsialTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASNSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPADEVASPIGSPQAQPSATGTPLPVQPSSKSNKPSANIPTssgissygrsnsvvvafvsfmasYLLWMVQA
***LLLLHLLAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASNSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPA************************************************NSVVVAFVSFMASYLLWMV**
*AKLLLLHLLAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASNSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVH*****************************************************VVVAFVSFMASYLLWMVQA
MAKLLLLHLLAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASNSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPADEVAS***********************************GISSYGRSNSVVVAFVSFMASYLLWMVQA
MAKLLLLHLLAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASNSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPAD********************************************GRSNSVVVAFVSFMASYLLWMVQA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHii
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAKLLLLHLLAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASNSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPADEVASPIGSPQAQPSATGTPLPVQPSSKSNKPSANIPTSSGISSYGRSNSVVVAFVSFMASYLLWMVQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query189 2.2.26 [Sep-21-2011]
Q41001189 Blue copper protein OS=Pi N/A no 0.608 0.608 0.448 5e-20
Q9T076 349 Early nodulin-like protei no no 0.703 0.381 0.352 4e-15
Q9SK27182 Early nodulin-like protei no no 0.740 0.769 0.368 6e-15
Q8LC95186 Early nodulin-like protei no no 0.486 0.494 0.422 1e-14
P00302107 Stellacyanin OS=Toxicoden N/A no 0.502 0.887 0.346 7e-13
Q02917187 Early nodulin-55-2 OS=Gly no no 0.597 0.604 0.35 6e-12
P93329268 Early nodulin-20 OS=Medic N/A no 0.597 0.421 0.310 4e-11
Q5JNJ5237 Early nodulin-like protei no no 0.724 0.578 0.300 6e-11
O80517202 Uclacyanin-2 OS=Arabidops no no 0.470 0.440 0.362 1e-10
P80728108 Mavicyanin OS=Cucurbita p N/A no 0.492 0.861 0.333 3e-09
>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1 Back     alignment and function desciption
 Score = 97.4 bits (241), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 4   LLLLHLLAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSA-SNS 62
           L+L  LLA++++AL S A  Y VGDTSGW I  +  TW  DK F VGD LVF+Y A +++
Sbjct: 7   LVLCFLLAIINMALPSLATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHT 66

Query: 63  VTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHV 118
           V EV + ++ +C   N + T S G TT+ L   G  YF+ G   +  GGMKL + V
Sbjct: 67  VDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKV 122

Pisum sativum (taxid: 3888)
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1 Back     alignment and function description
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2 Back     alignment and function description
>sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2 Back     alignment and function description
>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1 Back     alignment and function description
>sp|Q02917|NO552_SOYBN Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2 SV=1 Back     alignment and function description
>sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula GN=ENOD20 PE=3 SV=1 Back     alignment and function description
>sp|Q5JNJ5|ENL1_ORYSJ Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1 Back     alignment and function description
>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1 Back     alignment and function description
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
224096476174 predicted protein [Populus trichocarpa] 0.915 0.994 0.558 4e-50
224143399183 predicted protein [Populus trichocarpa] 0.962 0.994 0.553 8e-49
224053687184 predicted protein [Populus trichocarpa] 0.968 0.994 0.558 7e-48
255539917182 Blue copper protein precursor, putative 0.947 0.983 0.529 6e-43
225454990182 PREDICTED: blue copper protein [Vitis vi 0.878 0.912 0.534 2e-42
356576407185 PREDICTED: blue copper protein-like [Gly 0.793 0.810 0.568 1e-40
351726263185 uncharacterized protein LOC100500505 pre 0.777 0.794 0.564 2e-40
38260640191 Cu2+ plastocyanin-like [Capsella rubella 0.804 0.795 0.487 1e-38
38196011195 Cu2+ plastocyanin-like protein [Brassica 0.936 0.907 0.449 2e-38
38260606195 Cu2+ plastocyanin-like [Sisymbrium irio] 0.936 0.907 0.441 3e-38
>gi|224096476|ref|XP_002334696.1| predicted protein [Populus trichocarpa] gi|222874530|gb|EEF11661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 133/179 (74%), Gaps = 6/179 (3%)

Query: 10  LAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASNSVTEVTKQ 69
           + +LS ALT  AA Y VGD SGWDIS+++DTW  DK F VGDVL+F YS+S+SV EV K+
Sbjct: 1   MCLLSNALTCKAATYMVGDNSGWDISTDIDTWAQDKTFAVGDVLMFQYSSSHSVDEVKKE 60

Query: 70  NFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPADEVASPIGS 129
           +FD+CN +N L+T++ GNTTV+L+ PG RYFV GN+L+C GGMKL V+V +++  SP G+
Sbjct: 61  DFDSCNTTNVLRTFTTGNTTVSLTNPGTRYFVCGNKLHCLGGMKLQVNVASNQADSPTGA 120

Query: 130 PQAQPSATGTPLPVQPSSKSNKPSANIPTSSGISSYGRSNSVVVAFVSFMASYLLWMVQ 188
           PQ  P    +    QPSSKSN P++ IPTS+G S YG  +S+V+AF+ FMA+ L W VQ
Sbjct: 121 PQTHPGGNIS----QPSSKSNNPASVIPTSAG-SVYGGRDSIVMAFLGFMAT-LSWAVQ 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224143399|ref|XP_002336036.1| predicted protein [Populus trichocarpa] gi|222839538|gb|EEE77875.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224053687|ref|XP_002297929.1| predicted protein [Populus trichocarpa] gi|222845187|gb|EEE82734.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539917|ref|XP_002511023.1| Blue copper protein precursor, putative [Ricinus communis] gi|223550138|gb|EEF51625.1| Blue copper protein precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225454990|ref|XP_002281286.1| PREDICTED: blue copper protein [Vitis vinifera] gi|297744981|emb|CBI38573.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576407|ref|XP_003556323.1| PREDICTED: blue copper protein-like [Glycine max] Back     alignment and taxonomy information
>gi|351726263|ref|NP_001235329.1| uncharacterized protein LOC100500505 precursor [Glycine max] gi|255630494|gb|ACU15605.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|38260640|gb|AAR15456.1| Cu2+ plastocyanin-like [Capsella rubella] Back     alignment and taxonomy information
>gi|38196011|gb|AAR13691.1| Cu2+ plastocyanin-like protein [Brassica oleracea] Back     alignment and taxonomy information
>gi|38260606|gb|AAR15424.1| Cu2+ plastocyanin-like [Sisymbrium irio] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
TAIR|locus:504956334192 AT5G07475 [Arabidopsis thalian 0.698 0.687 0.514 8.3e-35
TAIR|locus:2062525261 UCC1 "uclacyanin 1" [Arabidops 0.724 0.524 0.418 7.8e-23
TAIR|locus:2043833206 AT2G26720 [Arabidopsis thalian 0.682 0.626 0.379 2.7e-20
TAIR|locus:2052866200 AT2G31050 [Arabidopsis thalian 0.671 0.635 0.395 3.1e-19
TAIR|locus:2154679 370 ENODL1 "early nodulin-like pro 0.724 0.370 0.379 4.1e-19
TAIR|locus:2081952187 AT3G60270 [Arabidopsis thalian 0.698 0.705 0.375 1.1e-18
TAIR|locus:2081957222 UCC3 "uclacyanin 3" [Arabidops 0.703 0.599 0.397 1.1e-18
TAIR|locus:2086518174 AT3G27200 [Arabidopsis thalian 0.645 0.701 0.365 1.4e-18
TAIR|locus:2151069187 AT5G26330 [Arabidopsis thalian 0.708 0.716 0.360 1.4e-18
TAIR|locus:2137672 349 ENODL2 "early nodulin-like pro 0.735 0.398 0.338 5.4e-18
TAIR|locus:504956334 AT5G07475 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 71/138 (51%), Positives = 99/138 (71%)

Query:    20 HAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASNSVTEVTKQNFDTCNISNP 79
             +A  YFVGD+SGWDISS+L++W   K F  GDVL+F YS+++SV EV K N+  CN ++ 
Sbjct:    26 NATTYFVGDSSGWDISSDLESWTSGKRFSPGDVLMFQYSSTHSVYEVAKDNYQNCNTTDA 85

Query:    80 LKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPADEVA-SPIGSPQAQPSATG 138
             ++T++NGNTTV LS PG+R+FV GNRL+CF GM+L V+V  +  + +P+GSPQA  S   
Sbjct:    86 IRTFTNGNTTVALSKPGNRFFVCGNRLHCFAGMRLLVNVEGNGPSQAPVGSPQAATSGI- 144

Query:   139 TPLPVQPSSKSNKPSANI 156
                 +QPSSK N P+  +
Sbjct:   145 ----LQPSSKKNNPATGV 158
GO:0005507 "copper ion binding" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009055 "electron carrier activity" evidence=IEA
GO:0031225 "anchored to membrane" evidence=TAS
TAIR|locus:2062525 UCC1 "uclacyanin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043833 AT2G26720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052866 AT2G31050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154679 ENODL1 "early nodulin-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081952 AT3G60270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081957 UCC3 "uclacyanin 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086518 AT3G27200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151069 AT5G26330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137672 ENODL2 "early nodulin-like protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_1836000001
hypothetical protein (174 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
pfam0229884 pfam02298, Cu_bind_like, Plastocyanin-like domain 5e-27
PLN03148167 PLN03148, PLN03148, Blue copper-like protein; Prov 2e-12
>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain Back     alignment and domain information 
 Score = 97.4 bits (243), Expect = 5e-27
 Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 34  ISSNLDTWPDDKVFKVGDVLVFSY-SASNSVTEVTKQNFDTCNISNPLKTYSNGNTTVTL 92
           ++++   W   K F+VGD LVF+Y    ++V EVTK ++++CN S P++TY+ GN  + L
Sbjct: 5   LNADYTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTGNDIIPL 64

Query: 93  SAPGDRYFVSGNRLYCFGGM 112
           + PG  YF+ G   +C GG 
Sbjct: 65  TKPGQHYFICGVPGHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84
>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 189
PLN03148167 Blue copper-like protein; Provisional 100.0
PF0229885 Cu_bind_like: Plastocyanin-like domain; InterPro: 99.97
PRK02710119 plastocyanin; Provisional 98.5
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 98.14
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 97.93
TIGR03102115 halo_cynanin halocyanin domain. Halocyanins are bl 97.84
TIGR02375116 pseudoazurin pseudoazurin. Pseudoazurin, also call 97.64
COG3794128 PetE Plastocyanin [Energy production and conversio 97.62
KOG3858233 consensus Ephrin, ligand for Eph receptor tyrosine 96.95
TIGR0265783 amicyanin amicyanin. Members of this family are am 96.6
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 96.22
PF00812145 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a 95.99
PF06525196 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb 95.72
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de 94.1
TIGR03094195 sulfo_cyanin sulfocyanin. Members of this family a 93.57
COG4454158 Uncharacterized copper-binding protein [Inorganic 93.37
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 90.5
PRK02888635 nitrous-oxide reductase; Validated 82.89
COG1622247 CyoA Heme/copper-type cytochrome/quinol oxidases, 80.27
>PLN03148 Blue copper-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-42  Score=283.34  Aligned_cols=117  Identities=29%  Similarity=0.599  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHhhhhcceeEEEecCCCCCccCCCCCCCCCCCceEeCCEEEEEecCCC-ceEEeCcccCCCCCCCCCcc
Q 042916            3 KLLLLHLLAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASN-SVTEVTKQNFDTCNISNPLK   81 (189)
Q Consensus         3 ~~~~~~l~~~~~~~~~~~a~~y~VGd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~~-sV~~V~k~~y~~C~~~~pi~   81 (189)
                      ++|++.+++++++...+++++|+|||+.||+.+.||++|+++|+|++||+|+|+|++++ +|+||+|++|++|+.++++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~   81 (167)
T PLN03148          2 AHLLLFCFFALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAG   81 (167)
T ss_pred             cCHHHHHHHHHHhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcc
Confidence            34444444444556678899999999999998889999999999999999999999875 59999999999999999999


Q ss_pred             ccccCCeEEEccCCcceEEEeCCCCCCCCCCeEEEEecC
Q 042916           82 TYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPA  120 (189)
Q Consensus        82 ~~~~G~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~  120 (189)
                      .+++|++.|+|+++|+|||||+ .+||++||||+|+|.+
T Consensus        82 ~~tsG~d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~  119 (167)
T PLN03148         82 NWTSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTILVHP  119 (167)
T ss_pred             eecCCCcEEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence            9999999999999999999999 6999999999999964

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>TIGR03102 halo_cynanin halocyanin domain Back     alignment and domain information
>TIGR02375 pseudoazurin pseudoazurin Back     alignment and domain information
>COG3794 PetE Plastocyanin [Energy production and conversion] Back     alignment and domain information
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO) Back     alignment and domain information
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information
>TIGR03094 sulfo_cyanin sulfocyanin Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
2cbp_A96 Cucumber Basic Protein, A Blue Copper Protein Lengt 2e-10
1ws7_A109 Crystal Structure Of Mavicyanin From Cucurbita Pepo 3e-10
1jer_A138 Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 1e-07
1x9r_A116 Umecyanin From Horse Raddish- Crystal Structure Of 8e-07
1f56_A91 Spinach Plantacyanin Length = 91 3e-06
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96 Back     alignment and structure 
Iteration: 1

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 22  AQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPL 80
           A Y VG + GW    N ++WP  K F+ GD+L+F+Y+ S ++V  V +  F TCN     
Sbjct: 1   AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA 58
Query: 81  KTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVH 117
           K Y++G   + L   G  YF+     +C  GMK+ V+
Sbjct: 59  KVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109 Back     alignment and structure
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 Back     alignment and structure
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116 Back     alignment and structure
>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 1e-35
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 4e-34
2cbp_A96 Cucumber basic protein; electron transport, phytoc 4e-32
1jer_A138 Cucumber stellacyanin; electron transport, copper, 2e-31
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 3e-31
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116 Back     alignment and structure
 Score =  120 bits (301), Expect = 1e-35
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 23  QYFVGDTSGWDISSNLD---TWPDDKVFKVGDVLVFSYSASN-SVTEVTKQNFDTCNISN 78
            Y VG    W   S+     TW   K F+VGD L F ++A    V  VTK  FD C   N
Sbjct: 3   DYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKEN 62

Query: 79  PLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPADEVASPIGSPQA 132
           P+   +     + L+  G +Y++     +C  G KL ++V     A    +P A
Sbjct: 63  PISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGATPGA 116
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109 Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96 Back     alignment and structure
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
1jer_A138 Cucumber stellacyanin; electron transport, copper, 100.0
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 100.0
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 100.0
2cbp_A96 Cucumber basic protein; electron transport, phytoc 100.0
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 100.0
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 99.2
2cal_A154 Rusticyanin; iron respiratory electron transport c 99.04
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 99.0
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 98.77
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 98.69
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 98.64
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 98.6
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 98.59
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 98.58
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 98.56
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 98.52
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 98.52
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 98.51
3erx_A123 Pseudoazurin; copper protein, high-resolution, E t 98.5
1byp_A99 Protein (plastocyanin); electron transfer, photosy 98.42
3ef4_A124 Pseudoazurin, blue copper protein; electron transf 98.38
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 98.3
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 98.05
3c75_A132 Amicyanin; copper proteins, electron transfer comp 97.89
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 97.8
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 97.73
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 97.69
1iko_P178 Ephrin-B2; greek KEY, glycosylation, signaling pro 97.68
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 97.54
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 97.53
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 97.52
2x11_B177 Ephrin-A5; receptor-signaling protein complex, dev 97.47
3czu_B182 Ephrin-A1; ATP-binding, kinase, nucleotide-binding 97.36
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 97.34
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 97.32
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 97.27
3d12_B141 Ephrin-B3; beta propeller, protein-receptor comple 96.89
2vsm_B140 Ephrin-B2; developmental protein, henipavirus, neu 96.83
1shx_A138 Ephrin-A5; ephrin signaling, hormone-growth factor 96.76
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 96.69
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 96.38
2wo3_B157 Ephrin-A2; transferase-signaling protein complex, 95.99
3s8f_B168 Cytochrome C oxidase subunit 2; complex IV, respir 92.98
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 92.01
2dv6_A 447 Nitrite reductase; electron transfer, reduction, d 91.84
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 91.53
3hei_B132 Ephrin-A1; EPH receptor tyrosine kinase, cell memb 90.8
3sbq_A638 Nitrous-oxide reductase; beta-propeller, cupredoxi 88.06
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
Probab=100.00  E-value=1.8e-42  Score=273.66  Aligned_cols=104  Identities=33%  Similarity=0.616  Sum_probs=98.2

Q ss_pred             ceeEEEecCCCCCccC---CCCCCCCCCCceEeCCEEEEEecCC-CceEEe-CcccCCCCCCCCCccccccCCeEEEc-c
Q 042916           20 HAAQYFVGDTSGWDIS---SNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEV-TKQNFDTCNISNPLKTYSNGNTTVTL-S   93 (189)
Q Consensus        20 ~a~~y~VGd~~GW~~~---~~Y~~Wa~~~tF~vGD~L~F~y~~~-~sV~~V-~k~~y~~C~~~~pi~~~~~G~~~v~L-~   93 (189)
                      +|++|+|||+.||+++   .||++|+++++|+|||+|+|+|.++ |+|+|| +|++|+.|+.++++..+++|++.|+| +
T Consensus         2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~   81 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD   81 (138)
T ss_dssp             CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred             CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEecc
Confidence            5789999999999998   7899999999999999999999976 459999 99999999999999999999999999 9


Q ss_pred             CCcceEEEeCCCCCCCCCCeEEEEecCCCC
Q 042916           94 APGDRYFVSGNRLYCFGGMKLHVHVPADEV  123 (189)
Q Consensus        94 ~~G~~YFic~v~~HC~~GmKl~I~V~~~~~  123 (189)
                      ++|++||||++++||++||||+|+|....+
T Consensus        82 ~~G~~YFicg~~gHC~~GmKl~I~V~~~~~  111 (138)
T 1jer_A           82 ELGMHYFVCTVGTHCSNGQKLSINVVAANA  111 (138)
T ss_dssp             SSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred             CCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence            999999999999999999999999987755
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0 Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5 Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Back     alignment and structure
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B* Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus} Back     alignment and structure
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E Back     alignment and structure
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B* Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens} Back     alignment and structure
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ... Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0 Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 189
d2cbpa_96 b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ 7e-34
d1ws8a_104 b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) 6e-31
d1f56a_91 b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera 7e-29
d1jera_110 b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ 1e-26
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  113 bits (285), Expect = 7e-34
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 22  AQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPL 80
           A Y VG + GW    N ++WP  K F+ GD+L+F+Y+ S ++V  V +  F TCN     
Sbjct: 1   AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA 58

Query: 81  KTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHV 118
           K Y++G   + L   G  YF+     +C  GMK+ V+ 
Sbjct: 59  KVYTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVNA 95
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104 Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91 Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
d2cbpa_96 Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1ws8a_104 Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663 100.0
d1jera_110 Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1f56a_91 Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 99.97
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 98.9
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 98.89
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 98.8
d2cj3a1105 Plastocyanin {Anabaena variabilis [TaxId: 1172]} 98.71
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 98.66
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 98.65
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 98.64
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum 98.62
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 98.53
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 98.49
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 98.48
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 98.41
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.34
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.29
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 98.18
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 97.94
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 97.52
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 97.47
d1shxa1138 Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} 97.09
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d 97.0
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 96.92
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 96.76
d1ikop_141 Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 95.98
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 95.75
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 95.68
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 94.65
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 94.22
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 94.11
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 93.68
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 92.56
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 87.76
d1mzya1153 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 84.15
d1gyca1130 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 83.42
d2bw4a1157 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 80.41
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=1.3e-38  Score=236.02  Aligned_cols=95  Identities=37%  Similarity=0.766  Sum_probs=90.1

Q ss_pred             eEEEecCCCCCccCCCCCCCCCCCceEeCCEEEEEecCCCc-eEEeCcccCCCCCCCCCccccccCCeEEEccCCcceEE
Q 042916           22 AQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASNS-VTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYF  100 (189)
Q Consensus        22 ~~y~VGd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~~s-V~~V~k~~y~~C~~~~pi~~~~~G~~~v~L~~~G~~YF  100 (189)
                      ++|+|||+.||++  +|+.|+++++|++||+|+|+|++++| |+||+|++|++|+.++++..+++|++.|+|++ |++||
T Consensus         1 A~y~VGg~~GW~~--~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~-G~~YF   77 (96)
T d2cbpa_           1 AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPK-GQSYF   77 (96)
T ss_dssp             CEEETTGGGCSCS--SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCS-EEEEE
T ss_pred             CEEEcCCCCCCCc--CHHHHhCCCcEecCCEEEEecCCCCceEEEEChHHcCccCCCCCcccccCCCeEEEeCC-CCCEE
Confidence            3799999999985  69999999999999999999999855 99999999999999999999999999999987 99999


Q ss_pred             EeCCCCCCCCCCeEEEEec
Q 042916          101 VSGNRLYCFGGMKLHVHVP  119 (189)
Q Consensus       101 ic~v~~HC~~GmKl~I~V~  119 (189)
                      ||++++||+.||||+|+|+
T Consensus        78 ic~~~~hC~~G~Kl~V~Vl   96 (96)
T d2cbpa_          78 ICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             ECCSTTTGGGTCEEEEEEC
T ss_pred             EeCCCCcCcCCCEEEEEEC
Confidence            9999999999999999985
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure