Citrus Sinensis ID: 042919

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MLSLAKPIIKKPQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEcccccccccccccEEEccccccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccHHHHccccccEEEccccEEEEEccHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEEcccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEcccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccEEEccccccccccEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEcccccccccccHHHHccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccHHHcccccccEEEEEccccccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccHHHHHHHHHcccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEEccccccccccHHccccccEEEEEccccccccccHHHHHHcHcccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHcccccccEEEcccccccccccHHHcccccccEEEcccccccc
Coil and Loop (DISEMBL)
mlslakpiikkpQELWHKFFQKGSITYLSVEDscrktngvplTVFVNTGICELKNLVeldlsknnlyghlspclsnlthikvldlssnqltgNLQSVIANIKSleylslddnnfeglfsfnslknhsklqVFKLSNSLVkieteefpglpeyqlkALNLRNCSLQALPSILLQQLDLRFIDLSHNklqgifpswllqnntkldTLYLLNNslsgnfqlpsskhdllrldishnkfscqlpgnmgkilPELLslnlsengfegripssmSEMKRLesldlssnnfsgelprqflsgcfslsflslsdnhlqgevvfpnstnlCWLYlnnnhfsgkiQDGLSKATSLLEldlsnnmlygqippwfgnlsglqfldisenqlcgsvpssfnlSSLRRLYMHMNafngsipgaLRRSLSltvldlrdnefsg
Flexible Loop (DISEMBL)
mlslakpiikkpqelWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSltvldlrdnefsg
Low Complexity Region (SEG)
MLSLAKPIIKKPQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPellslnlsenGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQflsgcfslsflslsDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG
Disordered region (IsUnstruct)
********IKKPQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNL*********************************PRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLD********
Disordered Region (DISOPRED)
MLSLAK*IIKKPQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS*
Disordered Region (DISEMBL)
MLSLAKPIIKKPQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG
Disordered Region (DISPRO)
MLSLAKPIIKKPQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSLAKPIIKKPQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	428	2.2.26 [Sep-21-2011]
Q9LRT1	1016	Probably inactive leucine	no	no	0.885	0.373	0.370	4e-35
Q42371	976	LRR receptor-like serine/	no	no	0.859	0.377	0.320	3e-34
Q9FL28	1173	LRR receptor-like serine/	no	no	0.869	0.317	0.327	5e-34
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.866	0.340	0.331	6e-34
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.880	0.316	0.331	7e-34
P47735	999	Receptor-like protein kin	no	no	0.836	0.358	0.360	8e-34
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.946	0.324	0.303	3e-33
Q6XAT2	967	LRR receptor-like serine/	no	no	0.803	0.355	0.325	1e-32
C0LGW6	966	LRR receptor-like serine/	no	no	0.801	0.355	0.328	6e-32
Q9LJM4	991	Receptor-like protein kin	no	no	0.913	0.394	0.298	3e-31

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  149 bits (376), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 150/405 (37%), Positives = 206/405 (50%), Gaps = 26/405 (6%)

Query: 38  NGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV 97
           +G+ LT  +N GI +L+ L  L LS NN  G+++  LSN  H++ LDLS N L+G + S 
Sbjct: 85  DGLALTGKINRGIQKLQRLKVLSLSNNNFTGNIN-ALSNNNHLQKLDLSHNNLSGQIPSS 143

Query: 98  IANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLV--KIETEEFPGLPEYQLK 155
           + +I SL++L L  N+F G  S +   N S L+   LS++ +  +I +  F       L 
Sbjct: 144 LGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRC---SVLN 200

Query: 156 ALNLRNCSLQALPSIL--LQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
           +LNL        PS +  + +L+ LR +DLS N L G  P  +L  +  L  L L  N  
Sbjct: 201 SLNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLH-NLKELQLQRNQF 259

Query: 213 SGNFQLPSSKH---DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMS 269
           SG   LPS       L R+D+S N FS +LP  + K L  L   ++S N   G  P  + 
Sbjct: 260 SG--ALPSDIGLCPHLNRVDLSSNHFSGELPRTLQK-LKSLNHFDVSNNLLSGDFPPWIG 316

Query: 270 EMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLC----WLY 325
           +M  L  LD SSN  +G+LP   +S   SL  L+LS+N L GEV  P S   C     + 
Sbjct: 317 DMTGLVHLDFSSNELTGKLPSS-ISNLRSLKDLNLSENKLSGEV--PESLESCKELMIVQ 373

Query: 326 LNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNL-SGLQFLDISENQLCGSVP 384
           L  N FSG I DG      L E+D S N L G IP     L   L  LD+S N L GS+P
Sbjct: 374 LKGNDFSGNIPDGFFDL-GLQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIP 432

Query: 385 SSFNL-SSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
               L   +R L +  N FN  +P  +    +LTVLDLR++   G
Sbjct: 433 GEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIG 477

Arabidopsis thaliana (taxid: 3702)

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 132/412 (32%), Positives = 207/412 (50%), Gaps = 44/412 (10%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           I +LK L +L L  N L G +   LS + ++K+LDL+ N+L+G +  +I   + L+YL L
Sbjct: 136 ISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGL 195

Query: 110 DDNNF-----------EGLFSFN------------SLKNHSKLQVFKLSNSLVKIETEEF 146
             NN             GL+ F+            ++ N +  QV  LS + +   T E 
Sbjct: 196 RGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQL---TGEI 252

Query: 147 PGLPEYQLKALNLRNCSLQA------LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNT 200
           P    + +  L +   SLQ       +PS++     L  +DLS N L G  P  +L N T
Sbjct: 253 P----FDIGFLQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPP-ILGNLT 307

Query: 201 KLDTLYLLNNSLSGNFQLP-SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENG 259
             + LYL +N L+G+      +   L  L+++ N  +  +P  +GK L +L  LN++ N 
Sbjct: 308 FTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGK-LTDLFDLNVANND 366

Query: 260 FEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNST 319
            EG IP  +S    L SL++  N FSG +PR F     S+++L+LS N+++G +    S 
Sbjct: 367 LEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAF-QKLESMTYLNLSSNNIKGPIPVELSR 425

Query: 320 --NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISEN 377
             NL  L L+NN  +G I   L     LL+++LS N + G +P  FGNL  +  +D+S N
Sbjct: 426 IGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNN 485

Query: 378 QLCGSVPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
            + G +P   N L ++  L +  N   G++ G+L   LSLTVL++  N   G
Sbjct: 486 DISGPIPEELNQLQNIILLRLENNNLTGNV-GSLANCLSLTVLNVSHNNLVG 536

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  145 bits (367), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 200/409 (48%), Gaps = 37/409 (9%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKV------------------------LDL 85
           IC+  +LV +    NNL G +  CL +L H+++                        LDL
Sbjct: 164 ICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDL 223

Query: 86  SSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEE 145
           S NQLTG +     N+ +L+ L L +N  EG          S +Q+    N L      E
Sbjct: 224 SGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAE 283

Query: 146 FPGLPEYQLKALNL-RNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDT 204
              L   QL+AL + +N    ++PS L +   L  + LS N L G   S  +     L+ 
Sbjct: 284 LGNL--VQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPI-SEEIGFLESLEV 340

Query: 205 LYLLNNSLSGNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGR 263
           L L +N+ +G F Q  ++  +L  L +  N  S +LP ++G +L  L +L+  +N   G 
Sbjct: 341 LTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGP 399

Query: 264 IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTN 320
           IPSS+S    L+ LDLS N  +GE+PR F  G  +L+F+S+  NH  GE+   +F N +N
Sbjct: 400 IPSSISNCTGLKLLDLSHNQMTGEIPRGF--GRMNLTFISIGRNHFTGEIPDDIF-NCSN 456

Query: 321 LCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC 380
           L  L + +N+ +G ++  + K   L  L +S N L G IP   GNL  L  L +  N   
Sbjct: 457 LETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFT 516

Query: 381 GSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           G +P    NL+ L+ L M+ N   G IP  +     L+VLDL +N+FSG
Sbjct: 517 GRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSG 565

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  145 bits (366), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 137/413 (33%), Positives = 201/413 (48%), Gaps = 42/413 (10%)

Query: 50  ICELK-NLVE-LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
           IC+L  N+VE L+LS + L G L   +  L  +  LDLS N  +G L S + N  SLEYL
Sbjct: 70  ICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYL 129

Query: 108 SLDDNNFEGLFS--FNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
            L +N+F G     F SL+N + L + +  N+L  +      GL E     ++  N S  
Sbjct: 130 DLSNNDFSGEVPDIFGSLQNLTFLYLDR--NNLSGLIPASVGGLIELVDLRMSYNNLS-G 186

Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPS--WLLQNNTKLDTLYLLNNSLSGNFQLPSSK- 222
            +P +L     L ++ L++NKL G  P+  +LL+N   L  L++ NNSL G     SS  
Sbjct: 187 TIPELLGNCSKLEYLALNNNKLNGSLPASLYLLEN---LGELFVSNNSLGGRLHFGSSNC 243

Query: 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282
             L+ LD+S N F   +P  +G     L SL + +    G IPSSM  ++++  +DLS N
Sbjct: 244 KKLVSLDLSFNDFQGGVPPEIGNC-SSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDN 302

Query: 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLS 340
             SG +P++ L  C SL  L L+DN LQGE+         L  L L  N  SG+I  G+ 
Sbjct: 303 RLSGNIPQE-LGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIW 361

Query: 341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLS---------- 390
           K  SL ++ + NN L G++P     L  L+ L +  N   G +P S  L+          
Sbjct: 362 KIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLG 421

Query: 391 ---------------SLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
                           LR   +  N  +G IP ++R+  +L  + L DN+ SG
Sbjct: 422 NRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSG 474

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  145 bits (365), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 150/452 (33%), Positives = 203/452 (44%), Gaps = 75/452 (16%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           I  LKNL EL L+ N   G + P + NL H++ LDLS N LTG L  +++ +  L YL L
Sbjct: 85  ISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDL 144

Query: 110 DDNNFEGLF----------------SFNSLKNHSKLQVFKLSN-SLVKIETEEFPGLPEY 152
            DN+F G                  S NSL      ++ KLSN S + +    F G    
Sbjct: 145 SDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPS 204

Query: 153 QLKALN-LRNCSLQA------LPSILLQQLDLRFIDLSHNKLQGIFPSWL---------- 195
           ++  ++ L+N +  +      LP  + +   L  +DLS+N L+   P             
Sbjct: 205 EIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILN 264

Query: 196 -------------LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGN 242
                        L N   L +L L  NSLSG   L  S+  LL      N+ S  LP  
Sbjct: 265 LVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSW 324

Query: 243 MGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL 302
           MGK    L SL L+ N F G IP  + +   L+ L L+SN  SG +PR+ L G  SL  +
Sbjct: 325 MGK-WKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRE-LCGSGSLEAI 382

Query: 303 SLSDNHLQG--EVVFPNSTNLCWLYLNNNH-----------------------FSGKIQD 337
            LS N L G  E VF   ++L  L L NN                        F+G+I  
Sbjct: 383 DLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLPLMALDLDSNNFTGEIPK 442

Query: 338 GLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN-LSSLRRLY 396
            L K+T+L+E   S N L G +P   GN + L+ L +S+NQL G +P     L+SL  L 
Sbjct: 443 SLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLN 502

Query: 397 MHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           ++ N F G IP  L    SLT LDL  N   G
Sbjct: 503 LNANMFQGKIPVELGDCTSLTTLDLGSNNLQG 534

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score =  145 bits (365), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 141/391 (36%), Positives = 202/391 (51%), Gaps = 33/391 (8%)

Query: 55  NLVELDLSKNNLYGHLSPCLS-NLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
           NL+ LDLS+N L G +   L  NL ++K L++S N L+  + S     + LE L+L  N 
Sbjct: 115 NLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNNLSDTIPSSFGEFRKLESLNLAGNF 174

Query: 114 FEGLFSFNSLKNHSKLQVFKLSNSLVKIET--EEFPGLPEYQLKALNLRNCSLQA-LPSI 170
             G     SL N + L+  KL+ +L        +   L E Q+  L L  C+L   +P  
Sbjct: 175 LSGTIP-ASLGNVTTLKELKLAYNLFSPSQIPSQLGNLTELQV--LWLAGCNLVGPIPPS 231

Query: 171 LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD---LLR 227
           L +   L  +DL+ N+L G  PSW+ Q  T ++ + L NNS SG  +LP S  +   L R
Sbjct: 232 LSRLTSLVNLDLTFNQLTGSIPSWITQLKT-VEQIELFNNSFSG--ELPESMGNMTTLKR 288

Query: 228 LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGE 287
            D S NK + ++P N+  +   L SLNL EN  EG +P S++  K L  L L +N  +G 
Sbjct: 289 FDASMNKLTGKIPDNLNLL--NLESLNLFENMLEGPLPESITRSKTLSELKLFNNRLTGV 346

Query: 288 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLC------WLYLNNNHFSGKIQDGLSK 341
           LP Q L     L ++ LS N   GE+      N+C      +L L +N FSG+I + L K
Sbjct: 347 LPSQ-LGANSPLQYVDLSYNRFSGEI----PANVCGEGKLEYLILIDNSFSGEISNNLGK 401

Query: 342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF----NLSSLRRLYM 397
             SL  + LSNN L GQIP  F  L  L  L++S+N   GS+P +     NLS+LR   +
Sbjct: 402 CKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNLR---I 458

Query: 398 HMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
             N F+GSIP  +     +  +   +N+FSG
Sbjct: 459 SKNRFSGSIPNEIGSLNGIIEISGAENDFSG 489

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 223/464 (48%), Gaps = 59/464 (12%)

Query: 1   MLSLAKPIIKKPQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGI-CE---LKNL 56
           +L + K ++  PQE                +D  R+ N   +     TG+ C+   L  +
Sbjct: 30  LLEVKKSLVTNPQE----------------DDPLRQWNSDNINYCSWTGVTCDNTGLFRV 73

Query: 57  VELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEG 116
           + L+L+   L G +SP      ++  LDLSSN L G + + ++N+ SLE L L  N   G
Sbjct: 74  IALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTG 133

Query: 117 LF--SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQA-LPSILLQ 173
                  SL N   L++    N LV    E    L   Q+  L L +C L   +PS L +
Sbjct: 134 EIPSQLGSLVNIRSLRIG--DNELVGDIPETLGNLVNLQM--LALASCRLTGPIPSQLGR 189

Query: 174 QLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSK-HDLLRLDISH 232
            + ++ + L  N L+G  P+  L N + L       N L+G       +  +L  L++++
Sbjct: 190 LVRVQSLILQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLAN 248

Query: 233 NKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF 292
           N  + ++P  +G+ + +L  L+L  N  +G IP S++++  L++LDLS+NN +GE+P +F
Sbjct: 249 NSLTGEIPSQLGE-MSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEF 307

Query: 293 LSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELD 349
            +    L  L L++NHL G +   +  N+TNL  L L+    SG+I   LSK  SL +LD
Sbjct: 308 WN-MSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLD 366

Query: 350 LSNNMLYGQIP------------------------PWFGNLSGLQFLDISENQLCGSVPS 385
           LSNN L G IP                        P   NL+ LQ+L +  N L G +P 
Sbjct: 367 LSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPK 426

Query: 386 SFN-LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
             + L  L  L+++ N F+G IP  +    SL ++D+  N F G
Sbjct: 427 EISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEG 470

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 131/403 (32%), Positives = 189/403 (46%), Gaps = 59/403 (14%)

Query: 55  NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 114
           N+V L+LS  NL G +S  L +L +++ +DL  N+L G +   I N  SL Y+    N  
Sbjct: 74  NVVSLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLL 133

Query: 115 EGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQA-LPSILLQ 173
            G   F+     SKL+                      QL+ LNL+N  L   +P+ L Q
Sbjct: 134 FGDIPFSI----SKLK----------------------QLEFLNLKNNQLTGPIPATLTQ 167

Query: 174 QLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF----------------- 216
             +L+ +DL+ N+L G  P  LL  N  L  L L  N L+G                   
Sbjct: 168 IPNLKTLDLARNQLTGEIPR-LLYWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRG 226

Query: 217 -----QLPSSKHDLLR---LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM 268
                 +P S  +      LD+S+N+ +  +P N+G +  ++ +L+L  N   GRIP  +
Sbjct: 227 NNLTGTIPESIGNCTSFEILDVSYNQITGVIPYNIGFL--QVATLSLQGNKLTGRIPEVI 284

Query: 269 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYL 326
             M+ L  LDLS N  +G +P    +  F+   L L  N L G++     N + L +L L
Sbjct: 285 GLMQALAVLDLSDNELTGPIPPILGNLSFT-GKLYLHGNKLTGQIPPELGNMSRLSYLQL 343

Query: 327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS 386
           N+N   GKI   L K   L EL+L+NN L G IP    + + L   ++  N L G+VP  
Sbjct: 344 NDNELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLE 403

Query: 387 F-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           F NL SL  L +  N+F G IP  L   ++L  LDL  N FSG
Sbjct: 404 FRNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGNNFSG 446

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 132/402 (32%), Positives = 188/402 (46%), Gaps = 59/402 (14%)

Query: 56  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 115
           +V L+LS  NL G +SP + +L +++ +DL  N+L G +   I N  SL YL L +N   
Sbjct: 73  VVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLY 132

Query: 116 GLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQA-LPSILLQQ 174
           G   F+     SKL+                      QL+ LNL+N  L   +P+ L Q 
Sbjct: 133 GDIPFSI----SKLK----------------------QLETLNLKNNQLTGPVPATLTQI 166

Query: 175 LDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF------------------ 216
            +L+ +DL+ N L G   S LL  N  L  L L  N L+G                    
Sbjct: 167 PNLKRLDLAGNHLTGEI-SRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGN 225

Query: 217 ----QLPSSKHDLLR---LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMS 269
                +P S  +      LDIS+N+ + ++P N+G +  ++ +L+L  N   GRIP  + 
Sbjct: 226 NLTGTIPESIGNCTSFQILDISYNQITGEIPYNIGFL--QVATLSLQGNRLTGRIPEVIG 283

Query: 270 EMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLN 327
            M+ L  LDLS N   G +P    +  F+   L L  N L G +     N + L +L LN
Sbjct: 284 LMQALAVLDLSDNELVGPIPPILGNLSFT-GKLYLHGNMLTGPIPSELGNMSRLSYLQLN 342

Query: 328 NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387
           +N   G I   L K   L EL+L+NN L G IP    + + L   ++  N L GS+P +F
Sbjct: 343 DNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAF 402

Query: 388 -NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
            NL SL  L +  N F G IP  L   ++L  LDL  N FSG
Sbjct: 403 RNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSG 444

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJM4|IKU2_ARATH Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1

 Score =  136 bits (343), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 210/415 (50%), Gaps = 24/415 (5%)

Query: 23  GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKV 82
           GS + ++ +D  R T+ +P        IC+LK L +L L  N+L G +   L     ++ 
Sbjct: 75  GSRSLINRDDDGRFTD-LPFD-----SICDLKLLEKLVLGNNSLRGQIGTNLGKCNRLRY 128

Query: 83  LDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIE 142
           LDL  N  +G   + I +++ LE+LSL+ +   G+F ++SLK+  +L    + ++  +  
Sbjct: 129 LDLGINNFSGEFPA-IDSLQLLEFLSLNASGISGIFPWSSLKDLKRLSFLSVGDN--RFG 185

Query: 143 TEEFPG--LPEYQLKALNLRNCSLQA-LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNN 199
           +  FP   L    L+ + L N S+   +P  +   + L+ ++LS N++ G  P  ++Q  
Sbjct: 186 SHPFPREILNLTALQWVYLSNSSITGKIPEGIKNLVRLQNLELSDNQISGEIPKEIVQLK 245

Query: 200 TKLDTLYLLNNSLSGNFQLPSSKHDLLR-LDISHNKFSCQLPGNMG--KILPELLSLNLS 256
             L  L + +N L+G   L       LR  D S+N     L G++   + L  L+SL + 
Sbjct: 246 N-LRQLEIYSNDLTGKLPLGFRNLTNLRNFDASNN----SLEGDLSELRFLKNLVSLGMF 300

Query: 257 ENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--V 314
           EN   G IP    + K L +L L  N  +G+LPR+ L    +  ++ +S+N L+G++   
Sbjct: 301 ENRLTGEIPKEFGDFKSLAALSLYRNQLTGKLPRR-LGSWTAFKYIDVSENFLEGQIPPY 359

Query: 315 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDI 374
                 +  L +  N F+G+  +  +K  +L+ L +SNN L G IP     L  LQFLD+
Sbjct: 360 MCKKGVMTHLLMLQNRFTGQFPESYAKCKTLIRLRVSNNSLSGMIPSGIWGLPNLQFLDL 419

Query: 375 SENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           + N   G++     N  SL  L +  N F+GS+P  +  + SL  ++LR N+FSG
Sbjct: 420 ASNYFEGNLTGDIGNAKSLGSLDLSNNRFSGSLPFQISGANSLVSVNLRMNKFSG 474

Modulates the seed size by negatively regulating the cellularization of syncytial endosperm.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
358345471	933	Receptor kinase [Medicago truncatula] gi	0.890	0.408	0.510	9e-95
255553269	2793	receptor-kinase, putative [Ricinus commu	0.901	0.138	0.502	5e-94
297842171	966	leucine-rich repeat family protein [Arab	0.883	0.391	0.480	1e-86
12323814	1068	disease resistance protein, putative; 11	0.885	0.354	0.489	5e-84
186495296	1000	receptor like protein 13 [Arabidopsis th	0.885	0.379	0.489	7e-84
15221162	965	receptor like protein 15 [Arabidopsis th	0.887	0.393	0.487	3e-83
238478394	1083	receptor like protein 1 [Arabidopsis tha	0.981	0.387	0.430	4e-83
12324907	910	putative disease resistance protein; 468	0.880	0.414	0.490	9e-83
238478392	913	receptor like protein 1 [Arabidopsis tha	0.911	0.427	0.462	1e-82
240254032	1034	receptor like protein 1 [Arabidopsis tha	0.911	0.377	0.462	2e-82

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  353 bits (906), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 212/415 (51%), Positives = 267/415 (64%), Gaps = 34/415 (8%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
           TG+C +KNL ELDLS+N + G+   CL NLT ++VLDLSSN   GN+ S I ++KSLEYL
Sbjct: 176 TGLCGMKNLQELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYL 235

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSL--VKIETEEFPGL-PEYQLKALNLRNCSL 164
           SL D NF+G+FSF+SL NHSKL+VF LS     + +ETEE P   P +QLK L LRNC L
Sbjct: 236 SLFDTNFDGIFSFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQLRNCFL 295

Query: 165 QA-----LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLP 219
            +      P+ LL Q +L+ +DLSHNKL G FPSW+L+NNTKL+TLYL+NNS +G  +LP
Sbjct: 296 NSKRDGTFPTFLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTLELP 355

Query: 220 SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL 279
           + KH LL L IS+NK   QL  ++GKI P L  +NLS+N FEG +PSS+ EM+ + +LDL
Sbjct: 356 TFKHGLLDLQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDL 415

Query: 280 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDG 338
           S+NNFSGEL    +S   SL  L LS N   G V +  N T L WLYLNNN FSG I+DG
Sbjct: 416 SNNNFSGELSSHLISNLTSLRLLRLSHNSFHGLVPLLSNLTRLNWLYLNNNSFSGVIEDG 475

Query: 339 LSKATSLLELDLSNNMLYGQIPPWFG------------------------NLSGLQFLDI 374
           +S  +SL  LD+SNNML G+IP W G                        NL  L +LD+
Sbjct: 476 VSNNSSLFSLDISNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNELCNLISLSYLDL 535

Query: 375 SENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           SEN L   +P  F N   ++ LY+  NA  G+IP A  +   LT LDLRDN F G
Sbjct: 536 SENNLSDFLPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNFFG 590

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 199/396 (50%), Positives = 272/396 (68%), Gaps = 10/396 (2%)

Query: 42   LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
             + F   G+C LK+L+EL LS N   G L  CLSNLT+++VLDL+SN+ +GN+QSV++ +
Sbjct: 1199 FSFFSFVGLCGLKSLLELGLSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKL 1258

Query: 102  KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSN--SLVKIETEEFPGLPEYQLKALNL 159
             SL+YL L  N FEGLFSF+SL NH KL++F+LS+  +++++ETE     P +QLK ++L
Sbjct: 1259 TSLKYLFLSGNKFEGLFSFSSLANHKKLEIFELSSGSTMLELETEIPVWFPTFQLKVIDL 1318

Query: 160  RNCSL----QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN 215
             NC+L    + +PS LL Q DL+FIDLSHN L G FPSW+LQNN++L+ + ++NNS +G 
Sbjct: 1319 PNCNLNLRTRRIPSFLLYQHDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTGT 1378

Query: 216  FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLE 275
            FQLPS +H+L+ L IS N  + Q+P ++G +L  L  LN+S N FEG IPSS+S+M+ L 
Sbjct: 1379 FQLPSYRHELINLKISSNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLS 1438

Query: 276  SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTN---LCWLYLNNNHFS 332
             LDLS+N FSGELPR  LS    L  L LS+N+ QG  +FP + N   L  L +NNN+FS
Sbjct: 1439 ILDLSNNYFSGELPRSLLSNSTYLVALVLSNNNFQGR-IFPETMNLEELTVLDMNNNNFS 1497

Query: 333  GKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSL 392
            GKI         L  LD+S N + G IP    NLS ++ LD+SEN+  G++PS FN SSL
Sbjct: 1498 GKIDVDFFYCPRLSVLDISKNKVAGVIPIQLCNLSSVEILDLSENRFFGAMPSCFNASSL 1557

Query: 393  RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
            R L++  N  NG IP  L RS +L V+DLR+N+FSG
Sbjct: 1558 RYLFLQKNGLNGLIPHVLSRSSNLVVVDLRNNKFSG 1593

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 195/406 (48%), Positives = 260/406 (64%), Gaps = 28/406 (6%)

Query: 49  GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
           GICELKN  ELDLS+N L GH   CL++LT ++VLDLSSNQLTG + S + ++ SLEYLS
Sbjct: 242 GICELKNTQELDLSQNQLVGHFPSCLTSLTGLRVLDLSSNQLTGTVPSTLGSLPSLEYLS 301

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSLQAL 167
           L DN+FEG FSF SL N S L V KL +    ++   E    P++QL  + LR+C+++ +
Sbjct: 302 LFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKV 361

Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 227
           P  L+ Q DLR +DLS+NK+ G  PSWLL NNTKL  L L NN  + +FQ+P S HDLL 
Sbjct: 362 PHFLIHQKDLRHVDLSNNKISGKLPSWLLANNTKLKVLLLQNNFFT-SFQIPKSAHDLLF 420

Query: 228 LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGE 287
           LD S N+F+   P N+G I P L  +N+ +N F+G +PSS+  MK L+ LDLS N+F G+
Sbjct: 421 LDASANEFNHLFPENIGWIFPHLRYMNIYKNDFQGNLPSSLGNMKGLQYLDLSHNSFHGK 480

Query: 288 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLC---WLYLNNNHFSGKIQDGLSKATS 344
           LPR F++GC+S++ L LS N L GE +FP STNL     L+++NN F+GKI  GL    +
Sbjct: 481 LPRSFVNGCYSMAILKLSHNKLSGE-IFPESTNLTSLLGLFMDNNLFTGKIGQGLRSLIN 539

Query: 345 LLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-FNLSSLRRLYMHMNAFN 403
           L  LD+SNN L G IP W G L  L  L IS+N L G +P+S FN SSL+ L +  N+ +
Sbjct: 540 LELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGEIPTSLFNKSSLQLLDLSTNSLS 599

Query: 404 GSIP-------------------GALRRSL--SLTVLDLRDNEFSG 428
           G IP                   G +  +L  ++ +LDLR+N FSG
Sbjct: 600 GGIPPHHDSRDGVVLLLQDNNLSGTIADTLLVNVEILDLRNNRFSG 645

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323814|gb|AAG51873.1|AC079678_3 disease resistance protein, putative; 11609-15699 [Arabidopsis thaliana]

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 189/386 (48%), Positives = 249/386 (64%), Gaps = 7/386 (1%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
           +G C  KN+ EL LS N L G    CL++LT ++VLDLSSNQLTGN+ S +AN++SLEYL
Sbjct: 320 SGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYL 379

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETE-EFPGLPEYQLKALNLRNCSLQA 166
           SL  NNFEG FS   L N SKL+V +L +    +E E E    P++QL  + LR+C+L+ 
Sbjct: 380 SLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEK 439

Query: 167 LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
           +P  LL Q DL  +DLS N++ G FPSWLL+NNTKL+ L L NNS + +FQLP S H+LL
Sbjct: 440 VPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLL 498

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG 286
            L++S NKF+     N G ILP L+ +NL+ NGF+G +PSS+  MK +E LDLS N F G
Sbjct: 499 FLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHG 558

Query: 287 ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLY---LNNNHFSGKIQDGLSKAT 343
           +LPR+FL GC++L+ L LS N L GE VFP + N   L+   ++NN F+G I  G     
Sbjct: 559 KLPRRFLKGCYNLTILKLSHNKLSGE-VFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLP 617

Query: 344 SLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-FNLSSLRRLYMHMNAF 402
           SL  LD+SNN L G IP W G   GL  L +S N L G +P+S FN+S L+ L +  N  
Sbjct: 618 SLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRL 677

Query: 403 NGSIPGALRRSLSLTVLDLRDNEFSG 428
           +G IP  +       VL L++N  SG
Sbjct: 678 SGDIPPHVSSIYHGAVLLLQNNNLSG 703

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186495296|ref|NP_177557.2| receptor like protein 13 [Arabidopsis thaliana] gi|332197441|gb|AEE35562.1| receptor like protein 13 [Arabidopsis thaliana]

 Score =  317 bits (812), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 189/386 (48%), Positives = 249/386 (64%), Gaps = 7/386 (1%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
           +G C  KN+ EL LS N L G    CL++LT ++VLDLSSNQLTGN+ S +AN++SLEYL
Sbjct: 252 SGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYL 311

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETE-EFPGLPEYQLKALNLRNCSLQA 166
           SL  NNFEG FS   L N SKL+V +L +    +E E E    P++QL  + LR+C+L+ 
Sbjct: 312 SLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEK 371

Query: 167 LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
           +P  LL Q DL  +DLS N++ G FPSWLL+NNTKL+ L L NNS + +FQLP S H+LL
Sbjct: 372 VPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLL 430

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG 286
            L++S NKF+     N G ILP L+ +NL+ NGF+G +PSS+  MK +E LDLS N F G
Sbjct: 431 FLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHG 490

Query: 287 ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLY---LNNNHFSGKIQDGLSKAT 343
           +LPR+FL GC++L+ L LS N L GE VFP + N   L+   ++NN F+G I  G     
Sbjct: 491 KLPRRFLKGCYNLTILKLSHNKLSGE-VFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLP 549

Query: 344 SLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-FNLSSLRRLYMHMNAF 402
           SL  LD+SNN L G IP W G   GL  L +S N L G +P+S FN+S L+ L +  N  
Sbjct: 550 SLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRL 609

Query: 403 NGSIPGALRRSLSLTVLDLRDNEFSG 428
           +G IP  +       VL L++N  SG
Sbjct: 610 SGDIPPHVSSIYHGAVLLLQNNNLSG 635

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 189/388 (48%), Positives = 254/388 (65%), Gaps = 8/388 (2%)

Query: 46  VNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
           + +GICEL N+ ELDLS+N L GHL  CL++LT ++VLDLSSN+LTG + S + +++SLE
Sbjct: 236 IQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLE 295

Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSL 164
           YLSL DN+FEG FSF SL N S L V KL +    ++   E    P++QL  + LR+C++
Sbjct: 296 YLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNM 355

Query: 165 QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD 224
           + +P  LL Q DLR +DLS N + G  PSWLL NNTKL  L LL N+L  +FQ+P S H+
Sbjct: 356 EKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVL-LLQNNLFTSFQIPKSAHN 414

Query: 225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF 284
           LL LD+S N F+   P N+G I P L  LN S+N F+  +PSS+  M  ++ +DLS N+F
Sbjct: 415 LLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSF 474

Query: 285 SGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS---TNLCWLYLNNNHFSGKIQDGLSK 341
            G LPR F++GC+S++ L LS N L GE +FP S   TN+  L+++NN F+GKI  GL  
Sbjct: 475 HGNLPRSFVNGCYSMAILKLSHNKLSGE-IFPESTNFTNILGLFMDNNLFTGKIGQGLRS 533

Query: 342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-FNLSSLRRLYMHMN 400
             +L  LD+SNN L G IP W G L  L  L IS+N L G +P S FN SSL+ L +  N
Sbjct: 534 LINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSAN 593

Query: 401 AFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           + +G IP     S +  VL L+DN+ SG
Sbjct: 594 SLSGVIPPQ-HDSRNGVVLLLQDNKLSG 620

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478394|ref|NP_001154318.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189998|gb|AEE28119.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 203/471 (43%), Positives = 271/471 (57%), Gaps = 51/471 (10%)

Query: 6   KPIIKKPQELW-------------HKFFQKGSITYLSVEDSCR------KTNGVPLTVFV 46
           + +++K + LW             HK    G   +L +E          K N + LT   
Sbjct: 291 REVVQKVETLWIGLRLSFQMSITHHKSVTVGGNGFLGLEIPTSLQVLDFKRNQLSLTHEG 350

Query: 47  NTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS-LE 105
             GIC L  L ELDLS N L   L  CL NLTH++ LDLS+NQL GNL S ++ + S LE
Sbjct: 351 YLGICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLE 409

Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSN--SLVKIETEEFPGLPEYQLKALNLRNCS 163
           YLSL DNNF+G F FNSL N ++L VFKLS+   +++++TE     P +QLK L L NCS
Sbjct: 410 YLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTES-SWAPLFQLKMLYLSNCS 468

Query: 164 L-QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSK 222
           L   +   L+ Q DL F+DLSHNKL G FP+WL++NNT+L T+ L  NSL+   QLP   
Sbjct: 469 LGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILV 527

Query: 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282
           H L  LDIS N     +  ++G + P L  +N S N F+G IPSS+ EMK L+ LD+SSN
Sbjct: 528 HGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSN 587

Query: 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLS 340
              G+LP  FLSGC+SL  L LS+N LQG++     N T L  L+L+ N+F+G +++GL 
Sbjct: 588 GLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLL 647

Query: 341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFL-----------------------DISEN 377
           K+ +L  LD+S+N   G +P W G +S L +L                       DIS N
Sbjct: 648 KSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQSPWVEVMDISHN 707

Query: 378 QLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
              GS+P + N  SLR L +  N F G +PG L ++  L VLDLR+N FSG
Sbjct: 708 SFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSG 758

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana]

 Score =  313 bits (803), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 189/385 (49%), Positives = 252/385 (65%), Gaps = 8/385 (2%)

Query: 49  GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
           GICEL N+ ELDLS+N L GHL  CL++LT ++VLDLSSN+LTG + S + +++SLEYLS
Sbjct: 184 GICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLS 243

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSLQAL 167
           L DN+FEG FSF SL N S L V KL +    ++   E    P++QL  + LR+C+++ +
Sbjct: 244 LFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKV 303

Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 227
           P  LL Q DLR +DLS N + G  PSWLL NNTKL  L LL N+L  +FQ+P S H+LL 
Sbjct: 304 PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVL-LLQNNLFTSFQIPKSAHNLLF 362

Query: 228 LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGE 287
           LD+S N F+   P N+G I P L  LN S+N F+  +PSS+  M  ++ +DLS N+F G 
Sbjct: 363 LDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGN 422

Query: 288 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS---TNLCWLYLNNNHFSGKIQDGLSKATS 344
           LPR F++GC+S++ L LS N L GE +FP S   TN+  L+++NN F+GKI  GL    +
Sbjct: 423 LPRSFVNGCYSMAILKLSHNKLSGE-IFPESTNFTNILGLFMDNNLFTGKIGQGLRSLIN 481

Query: 345 LLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-FNLSSLRRLYMHMNAFN 403
           L  LD+SNN L G IP W G L  L  L IS+N L G +P S FN SSL+ L +  N+ +
Sbjct: 482 LELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLS 541

Query: 404 GSIPGALRRSLSLTVLDLRDNEFSG 428
           G IP     S +  VL L+DN+ SG
Sbjct: 542 GVIPPQ-HDSRNGVVLLLQDNKLSG 565

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478392|ref|NP_001154317.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189997|gb|AEE28118.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 195/422 (46%), Positives = 256/422 (60%), Gaps = 32/422 (7%)

Query: 36  KTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQ 95
           K N + LT     GIC L  L ELDLS N L   L  CL NLTH++ LDLS+NQL GNL 
Sbjct: 170 KRNQLSLTHEGYLGICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLS 228

Query: 96  SVIANIKS-LEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSN--SLVKIETEEFPGLPEY 152
           S ++ + S LEYLSL DNNF+G F FNSL N ++L VFKLS+   +++++TE     P +
Sbjct: 229 SFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTES-SWAPLF 287

Query: 153 QLKALNLRNCSL-QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS 211
           QLK L L NCSL   +   L+ Q DL F+DLSHNKL G FP+WL++NNT+L T+ L  NS
Sbjct: 288 QLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNS 347

Query: 212 LSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEM 271
           L+   QLP   H L  LDIS N     +  ++G + P L  +N S N F+G IPSS+ EM
Sbjct: 348 LT-KLQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEM 406

Query: 272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNN 329
           K L+ LD+SSN   G+LP  FLSGC+SL  L LS+N LQG++     N T L  L+L+ N
Sbjct: 407 KSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGN 466

Query: 330 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFL----------------- 372
           +F+G +++GL K+ +L  LD+S+N   G +P W G +S L +L                 
Sbjct: 467 NFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQS 526

Query: 373 ------DISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
                 DIS N   GS+P + N  SLR L +  N F G +PG L ++  L VLDLR+N F
Sbjct: 527 PWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNF 586

Query: 427 SG 428
           SG
Sbjct: 587 SG 588

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254032|ref|NP_172219.5| receptor like protein 1 [Arabidopsis thaliana] gi|332189996|gb|AEE28117.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 195/422 (46%), Positives = 256/422 (60%), Gaps = 32/422 (7%)

Query: 36  KTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQ 95
           K N + LT     GIC L  L ELDLS N L   L  CL NLTH++ LDLS+NQL GNL 
Sbjct: 291 KRNQLSLTHEGYLGICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLS 349

Query: 96  SVIANIKS-LEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSN--SLVKIETEEFPGLPEY 152
           S ++ + S LEYLSL DNNF+G F FNSL N ++L VFKLS+   +++++TE     P +
Sbjct: 350 SFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTES-SWAPLF 408

Query: 153 QLKALNLRNCSL-QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS 211
           QLK L L NCSL   +   L+ Q DL F+DLSHNKL G FP+WL++NNT+L T+ L  NS
Sbjct: 409 QLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNS 468

Query: 212 LSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEM 271
           L+   QLP   H L  LDIS N     +  ++G + P L  +N S N F+G IPSS+ EM
Sbjct: 469 LT-KLQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEM 527

Query: 272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNN 329
           K L+ LD+SSN   G+LP  FLSGC+SL  L LS+N LQG++     N T L  L+L+ N
Sbjct: 528 KSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGN 587

Query: 330 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFL----------------- 372
           +F+G +++GL K+ +L  LD+S+N   G +P W G +S L +L                 
Sbjct: 588 NFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQS 647

Query: 373 ------DISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
                 DIS N   GS+P + N  SLR L +  N F G +PG L ++  L VLDLR+N F
Sbjct: 648 PWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNF 707

Query: 427 SG 428
           SG
Sbjct: 708 SG 709

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.887	0.393	0.456	4.5e-82
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.885	0.379	0.458	1.9e-81
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.866	0.408	0.438	1.9e-74
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.927	0.366	0.432	1.1e-72
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.876	0.420	0.423	1.9e-67
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.871	0.382	0.421	7.9e-67
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.866	0.396	0.347	4.3e-42
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.885	0.373	0.350	2e-39
TAIR|locus:2005540	999	HAE "HAESA" [Arabidopsis thali	0.843	0.361	0.332	2.3e-38
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.822	0.434	0.315	2.7e-38

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
 Identities = 177/388 (45%), Positives = 236/388 (60%)

Query:    46 VNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
             + +GICEL N+ ELDLS+N L GHL  CL++LT ++VLDLSSN+LTG + S + +++SLE
Sbjct:   236 IQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLE 295

Query:   106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSL 164
             YLSL DN+FEG FSF SL N S L V KL +    ++   E    P++QL  + LR+C++
Sbjct:   296 YLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNM 355

Query:   165 QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD 224
             + +P  LL Q DLR +DLS N + G  PSWLL NNTKL  L LL N+L  +FQ+P S H+
Sbjct:   356 EKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVL-LLQNNLFTSFQIPKSAHN 414

Query:   225 LLRLDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNF 284
             LL LD+S N F+   P N+G I P           F+  +PSS+  M  ++ +DLS N+F
Sbjct:   415 LLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSF 474

Query:   285 SGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTN---LCWLYLNNNHFSGKIQDGLSK 341
              G LPR                N L GE+ FP STN   +  L+++NN F+GKI  GL  
Sbjct:   475 HGNLPRSFVNGCYSMAILKLSHNKLSGEI-FPESTNFTNILGLFMDNNLFTGKIGQGLRS 533

Query:   342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-FNLSSLRRLYMHMN 400
               +L  LD+SNN L G IP W G L  L  L IS+N L G +P S FN SSL+ L +  N
Sbjct:   534 LINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSAN 593

Query:   401 AFNGSIPGALRRSLSLTVLDLRDNEFSG 428
             + +G IP     S +  VL L+DN+ SG
Sbjct:   594 SLSGVIPPQ-HDSRNGVVLLLQDNKLSG 620

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
 Identities = 177/386 (45%), Positives = 231/386 (59%)

Query:    48 TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
             +G C  KN+ EL LS N L G    CL++LT ++VLDLSSNQLTGN+ S +AN++SLEYL
Sbjct:   252 SGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYL 311

Query:   108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETE-EFPGLPEYQLKALNLRNCSLQA 166
             SL  NNFEG FS   L N SKL+V +L +    +E E E    P++QL  + LR+C+L+ 
Sbjct:   312 SLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEK 371

Query:   167 LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
             +P  LL Q DL  +DLS N++ G FPSWLL+NNTKL+ L L NNS + +FQLP S H+LL
Sbjct:   372 VPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLL 430

Query:   227 RLDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNFSG 286
              L++S NKF+     N G ILP          GF+G +PSS+  MK +E LDLS N F G
Sbjct:   431 FLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHG 490

Query:   287 ELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLC--WLY-LNNNHFSGKIQDGLSKAT 343
             +LPR+               N L GEV FP + N    W+  ++NN F+G I  G     
Sbjct:   491 KLPRRFLKGCYNLTILKLSHNKLSGEV-FPEAANFTRLWVMSMDNNLFTGNIGKGFRSLP 549

Query:   344 SLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-FNLSSLRRLYMHMNAF 402
             SL  LD+SNN L G IP W G   GL  L +S N L G +P+S FN+S L+ L +  N  
Sbjct:   550 SLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRL 609

Query:   403 NGSIPGALRRSLSLTVLDLRDNEFSG 428
             +G IP  +       VL L++N  SG
Sbjct:   610 SGDIPPHVSSIYHGAVLLLQNNNLSG 635

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 168/383 (43%), Positives = 224/383 (58%)

Query:    51 CELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
             CE+KNL ELDL   N  G L  C  NL  ++ LDLSSNQLTGN+    ++++SLEYLSL 
Sbjct:   217 CEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLS 276

Query:   111 DNNFEGLFSFNSLKNHSKLQVFKLSNS--LVKIETEEFPGLPEYQLKALNLRNCSLQALP 168
             DN+FEG FS N L N +KL+VF  S+   +V+++ E     P +QL  L LR CSL+ +P
Sbjct:   277 DNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIES-TWQPLFQLSVLVLRLCSLEKIP 335

Query:   169 SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL 228
             + L+ Q +L  +DLS N++ GI P+WLL+NN +L+ L L NNS +  FQ+P+S H+L  L
Sbjct:   336 NFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHNLQVL 394

Query:   229 DISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288
             D S N      P N G++LP          GF+G  PSSM EM  +  LDLS NN SGEL
Sbjct:   395 DFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGEL 454

Query:   289 PRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTN---LCWLYLNNNHFSGKIQDGLSKATSL 345
             P+                N   G  + P  TN   L  L +NNN F+GKI  GL     L
Sbjct:   455 PQSFVSSCFSLSILQLSHNKFSGHFL-PRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDL 513

Query:   346 LELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGS 405
               LD+SNN L G++PP       L FLD+S N L G++PS  +L ++  L++H N F G 
Sbjct:   514 CILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNV--LFLHNNNFTGP 571

Query:   406 IPGALRRSLSLTVLDLRDNEFSG 428
             IP     S+   +LDLR+N+ SG
Sbjct:   572 IPDTFLGSIQ--ILDLRNNKLSG 592

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 1.1e-72, P = 1.1e-72
 Identities = 177/409 (43%), Positives = 239/409 (58%)

Query:    26 TYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDL 85
             T L V D   K N + LT     GIC L  L ELDLS N L   L  CL NLTH++ LDL
Sbjct:   332 TSLQVLDF--KRNQLSLTHEGYLGICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDL 388

Query:    86 SSNQLTGNLQSVIANIKS-LEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSL--VKIE 142
             S+NQL GNL S ++ + S LEYLSL DNNF+G F FNSL N ++L VFKLS+ +  ++++
Sbjct:   389 SNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQ 448

Query:   143 TEEFPGLPEYQLKALNLRNCSL-QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTK 201
             TE     P +QLK L L NCSL   +   L+ Q DL F+DLSHNKL G FP+WL++NNT+
Sbjct:   449 TES-SWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTR 507

Query:   202 LDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFE 261
             L T+ L  NSL+   QLP   H L  LDIS N     +  ++G + P           F+
Sbjct:   508 LQTILLSGNSLT-KLQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQ 566

Query:   262 GRIPSSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVV--FPNST 319
             G IPSS+ EMK L+ LD+SSN   G+LP                +N LQG++     N T
Sbjct:   567 GTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLT 626

Query:   320 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379
              L  L+L+ N+F+G +++GL K+ +L  LD+S+N   G +P W G +S L +L +S NQL
Sbjct:   627 GLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQL 686

Query:   380 CGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
              G  P       +  + +  N+F+GSIP  +    SL  L L++NEF+G
Sbjct:   687 KGPFPFLRQSPWVEVMDISHNSFSGSIPRNVNFP-SLRELRLQNNEFTG 734

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 164/387 (42%), Positives = 225/387 (58%)

Query:    49 GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
             GIC L+ L EL LS+N   G +  C S  + ++VLDLSSN L+G +   I++ KS+EYLS
Sbjct:   173 GICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLS 232

Query:   109 LDDNNFEGLFSFNSLKNHSKLQVFKLSNS---LVKIETEEFPGLPEYQLKALNLRNCSLQ 165
             L DN+FEGLFS   +   ++L+VFKLS+    L  +ET    GL + QL ++ L +C+L 
Sbjct:   233 LLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGL-QSQLSSIMLSHCNLG 291

Query:   166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
              +P  L  Q +LR IDLS+N L G+FP+WLL+NNT+L  L L NNS      LP +   L
Sbjct:   292 KIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLPRTMRRL 350

Query:   226 LRLDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNFS 285
               LD+S N F+ QLP ++G IL            F G +PSSM+ M+ +E +DLS NNFS
Sbjct:   351 QILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFS 410

Query:   286 GELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNS--TNLCWLYLNNNHFSGKIQDGLSKAT 343
             G+LPR                N   G ++  +S  T+L  L ++NN F+GKI   L    
Sbjct:   411 GKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLR 470

Query:   344 SLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-FNLSSLRRLYMHMNAF 402
              L  +DLSNN+L G IP W GN   L+ L IS N+L G++P S FN+  L  L +  N  
Sbjct:   471 MLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFL 529

Query:   403 NGSIPGALRRSLSLT-VLDLRDNEFSG 428
             +GS+P  LR S     +LDL +N  +G
Sbjct:   530 SGSLP--LRSSSDYGYILDLHNNNLTG 554

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 7.9e-67, P = 7.9e-67
 Identities = 163/387 (42%), Positives = 223/387 (57%)

Query:    51 CELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
             CE+KNL +LDL  N   G L  CL NL  ++VLDLSSNQL+GNL +   +++SLEYLSL 
Sbjct:   257 CEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLS 316

Query:   111 DNNFEGLFSFNSLKNHSKLQVFKLSNS--LVKIETEEFPGLPEYQLKALNLRNCSLQALP 168
             DNNFEG FS N L N +KL+VF+LS++  ++++ETE    LP++QL    L  CSL  +P
Sbjct:   317 DNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETES-NWLPKFQLTVAALPFCSLGKIP 375

Query:   169 SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL 228
             + L+ Q +LR +DLS N+L G  P+WLL+NN +L  L L NNS +  FQ+P+  H L  L
Sbjct:   376 NFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHKLQVL 434

Query:   229 DISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288
             D S N  +  LP N+G +LP          GF+G +PSSM EM  +  LDLS NNFSGEL
Sbjct:   435 DFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGEL 494

Query:   289 PRQXXXXXXXXXXXXXXDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 346
             PR                N   G +  +    T+L  L ++NN F+G+I  GL    +L 
Sbjct:   495 PRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLS 554

Query:   347 ELDLSNNMLYG----QIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNA 401
               D SNN L G     IPP   + S L  L +S N L G++P S   +  L  L +  N 
Sbjct:   555 IFDASNNRLTGLISSSIPP---DSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNL 611

Query:   402 FNGSIPGALRRSLSLTVLDLRDNEFSG 428
              +G +P ++  S+    + L +N F+G
Sbjct:   612 LSGDLPSSVVNSMYGIKIFLHNNSFTG 638

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.3e-42, P = 4.3e-42
 Identities = 139/400 (34%), Positives = 211/400 (52%)

Query:    40 VPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA 99
             +P+ VF     C+LKNL +LDL  N+  G +  CL +L  ++VLDLSSNQL+G+L S  +
Sbjct:   237 IPIEVF-----CKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFS 291

Query:   100 NIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ--LKAL 157
             +++SLEYLSL DNNF+G FS N L N + L+   +   L     E+ P    YQ  L+ +
Sbjct:   292 SLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVV---LRFCSLEKIPSFLLYQKKLRLV 348

Query:   158 NLRNCSLQA-LPSILL-QQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN 215
             +L + +L   +P+ LL    +L  + L +N    IFP   + +N ++   +  NN   G 
Sbjct:   349 DLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHNLQIFD-FSANNI--GK 404

Query:   216 F--QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSS-MSEMK 272
             F  ++  +  +L+RL+ S+N F    P ++G+ +            F G++P S ++   
Sbjct:   405 FPDKMDHALPNLVRLNGSNNGFQGYFPTSIGE-MKNISFLDLSYNNFSGKLPRSFVTGCV 463

Query:   273 RLESLDLSSNNFSGE-LPRQXXXXXXXXXXXXXXDNHL-QGEVV--FPNSTNLCWLYLNN 328
              +  L LS N FSG  LPR+              DN+L  G +     NST L  L ++N
Sbjct:   464 SIMFLKLSHNKFSGRFLPRETNFPSLDVLRM---DNNLFTGNIGGGLSNSTMLRILDMSN 520

Query:   329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN 388
             N  SG I   L +   L  + +SNN L G IPP    +  L FLD+S NQ  G++PS  +
Sbjct:   521 NGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVD 580

Query:   389 LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
                   +++H N F G IP  L +S+   +LDLR+N+ SG
Sbjct:   581 SELGIYMFLHNNNFTGPIPDTLLKSVQ--ILDLRNNKLSG 618

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 2.0e-39, P = 2.0e-39
 Identities = 142/405 (35%), Positives = 193/405 (47%)

Query:    38 NGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV 97
             +G+ LT  +N GI +L+ L  L LS NN  G+++  LSN  H++ LDLS N L+G + S 
Sbjct:    85 DGLALTGKINRGIQKLQRLKVLSLSNNNFTGNIN-ALSNNNHLQKLDLSHNNLSGQIPSS 143

Query:    98 IANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ-LKA 156
             + +I SL++L L  N+F G  S +   N S L+   LS++   +E +    L     L +
Sbjct:   144 LGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHN--HLEGQIPSTLFRCSVLNS 201

Query:   157 LNLRNCSLQALPSIL--LQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS 213
             LNL        PS +  + +L+ LR +DLS N L G  P  +L  +  L  L L  N  S
Sbjct:   202 LNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHN-LKELQLQRNQFS 260

Query:   214 GNFQLPSS----KHDLLRLDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMS 269
             G   LPS      H L R+D+S N FS +LP  + K L              G  P  + 
Sbjct:   261 G--ALPSDIGLCPH-LNRVDLSSNHFSGELPRTLQK-LKSLNHFDVSNNLLSGDFPPWIG 316

Query:   270 EMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCW----LY 325
             +M  L  LD SSN  +G+LP                +N L GEV  P S   C     + 
Sbjct:   317 DMTGLVHLDFSSNELTGKLP-SSISNLRSLKDLNLSENKLSGEV--PESLESCKELMIVQ 373

Query:   326 LNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNL-SGLQFLDISENQLCGSVP 384
             L  N FSG I DG      L E+D S N L G IP     L   L  LD+S N L GS+P
Sbjct:   374 LKGNDFSGNIPDGFFDL-GLQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIP 432

Query:   385 SSFNLS-SLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
                 L   +R L +  N FN  +P  +    +LTVLDLR++   G
Sbjct:   433 GEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIG 477

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 2.3e-38, P = 2.3e-38
 Identities = 129/388 (33%), Positives = 188/388 (48%)

Query:    55 NLVELDLSKNNLYGHLSPCLS-NLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
             NL+ LDLS+N L G +   L  NL ++K L++S N L+  + S     + LE L+L  N 
Sbjct:   115 NLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNNLSDTIPSSFGEFRKLESLNLAGNF 174

Query:   114 FEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPG-LPEY-QLKALNLRNCSLQA-LPSI 170
               G     SL N + L+  KL+ +L      + P  L    +L+ L L  C+L   +P  
Sbjct:   175 LSGTIPA-SLGNVTTLKELKLAYNL--FSPSQIPSQLGNLTELQVLWLAGCNLVGPIPPS 231

Query:   171 LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD---LLR 227
             L +   L  +DL+ N+L G  PSW+ Q  T ++ + L NNS SG  +LP S  +   L R
Sbjct:   232 LSRLTSLVNLDLTFNQLTGSIPSWITQLKT-VEQIELFNNSFSG--ELPESMGNMTTLKR 288

Query:   228 LDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNFSGE 287
              D S NK + ++P N+   L             EG +P S++  K L  L L +N  +G 
Sbjct:   289 FDASMNKLTGKIPDNLN--LLNLESLNLFENMLEGPLPESITRSKTLSELKLFNNRLTGV 346

Query:   288 LPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLC------WLYLNNNHFSGKIQDGLSK 341
             LP Q               N   GE+  P   N+C      +L L +N FSG+I + L K
Sbjct:   347 LPSQLGANSPLQYVDLSY-NRFSGEI--P--ANVCGEGKLEYLILIDNSFSGEISNNLGK 401

Query:   342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMN 400
               SL  + LSNN L GQIP  F  L  L  L++S+N   GS+P +     +L  L +  N
Sbjct:   402 CKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNLRISKN 461

Query:   401 AFNGSIPGALRRSLSLTVLDLRDNEFSG 428
              F+GSIP  +     +  +   +N+FSG
Sbjct:   462 RFSGSIPNEIGSLNGIIEISGAENDFSG 489

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 2.7e-38, P = 2.7e-38
 Identities = 119/377 (31%), Positives = 189/377 (50%)

Query:    46 VNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
             + + +  L  L  +DL  N L   +   + NL ++  L LS N+L+G + S I N+K+LE
Sbjct:   218 IPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPSSIHNLKNLE 277

Query:   106 YLSLDDNN-FEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCS 163
              L L++NN   G      L    KL+V +L  N+ ++     +   P+++L  L+LR+C 
Sbjct:   278 TLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYV-FPQFKLTHLSLRSCG 336

Query:   164 LQA-LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN-----FQ 217
             L+  +P  L  Q  L ++DLS N+L+G FP WL   + K+  + L +N L+G+     FQ
Sbjct:   337 LEGNIPDWLKNQTALVYLDLSINRLEGRFPKWLA--DLKIRNITLSDNRLTGSLPPNLFQ 394

Query:   218 LPSSKHDLLRLDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESL 277
              PS    L  L +S N FS Q+P  +G+              F G +P S++++  L+ L
Sbjct:   395 RPS----LYYLVLSRNNFSGQIPDTIGE--SQVMVLMLSENNFSGSVPKSITKIPFLKLL 448

Query:   278 DLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKI 335
             DLS N  SGE PR                N   G+V   F  ST++  L ++ N+FSG+ 
Sbjct:   449 DLSKNRLSGEFPR--FRPESYLEWLDISSNEFSGDVPAYFGGSTSM--LLMSQNNFSGEF 504

Query:   336 QDGLSKATSLLELDLSNNMLYGQIPPWFGNLSG-LQFLDISENQLCGSVPSSF-NLSSLR 393
                    + L+ LDL +N + G +      LS  ++ L +  N L GS+P    NL+SL+
Sbjct:   505 PQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLK 564

Query:   394 RLYMHMNAFNGSIPGAL 410
              L +  N  +G +P +L
Sbjct:   565 VLDLSENNLDGYLPSSL 581

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.2__1688__AT1G74190.1 annotation not avaliable (966 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	428
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-36
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  150 bits (381), Expect = 2e-39
 Identities = 129/366 (35%), Positives = 181/366 (49%), Gaps = 17/366 (4%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           I  L +L  LDL  NNL G +   L NL +++ L L  N+L+G +   I +++ L  L L
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291

Query: 110 DDNNFEGLFS--FNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
            DN+  G        L+N   L +F  SN+           LP  Q+  L     S   +
Sbjct: 292 SDNSLSGEIPELVIQLQNLEILHLF--SNNFTGKIPVALTSLPRLQVLQLWSNKFS-GEI 348

Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD--- 224
           P  L +  +L  +DLS N L G  P  L  ++  L  L L +NSL G  ++P S      
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEG--EIPKSLGACRS 405

Query: 225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF 284
           L R+ +  N FS +LP    K LP +  L++S N  +GRI S   +M  L+ L L+ N F
Sbjct: 406 LRRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464

Query: 285 SGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKA 342
            G LP  F  G   L  L LS N   G V     + + L  L L+ N  SG+I D LS  
Sbjct: 465 FGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522

Query: 343 TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNA 401
             L+ LDLS+N L GQIP  F  +  L  LD+S+NQL G +P +  N+ SL ++ +  N 
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582

Query: 402 FNGSIP 407
            +GS+P
Sbjct: 583 LHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (353), Expect = 9e-36
 Identities = 131/404 (32%), Positives = 183/404 (45%), Gaps = 61/404 (15%)

Query: 55  NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEY-------- 106
           +L  LDL  N L G +   L+NLT ++ L L+SNQL G +   +  +KSL++        
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 107 ----------------LSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLP 150
                           L L  NN  G    +SL N   LQ   L                
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFL---------------- 267

Query: 151 EYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
            YQ K       S    PSI   Q  L  +DLS N L G  P  ++Q    L+ L+L +N
Sbjct: 268 -YQNK------LSGPIPPSIFSLQ-KLISLDLSDNSLSGEIPELVIQLQN-LEILHLFSN 318

Query: 211 SLSGNFQLPSSKHDLLRLDISH---NKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS 267
           + +G  ++P +   L RL +     NKFS ++P N+GK    L  L+LS N   G IP  
Sbjct: 319 NFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEG 375

Query: 268 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLY 325
           +     L  L L SN+  GE+P+  L  C SL  + L DN   GE+   F     + +L 
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434

Query: 326 LNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPS 385
           ++NN+  G+I        SL  L L+ N  +G +P  FG+   L+ LD+S NQ  G+VP 
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPR 493

Query: 386 SF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
              +LS L +L +  N  +G IP  L     L  LDL  N+ SG
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (351), Expect = 1e-35
 Identities = 128/383 (33%), Positives = 193/383 (50%), Gaps = 21/383 (5%)

Query: 56  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNL-QSVIANIKSLEYLSLDDNNF 114
           +V +DLS  N+ G +S  +  L +I+ ++LS+NQL+G +   +     SL YL+L +NNF
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 115 EGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNL-RNCSLQALPSILLQ 173
            G     S+ N   L+   LSN+++  E     G     LK L+L  N  +  +P+ L  
Sbjct: 131 TGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 174 QLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-----QLPSSKHDLLRL 228
              L F+ L+ N+L G  P  L Q  + L  +YL  N+LSG        L S  H    L
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKS-LKWIYLGYNNLSGEIPYEIGGLTSLNH----L 241

Query: 229 DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288
           D+ +N  +  +P ++G  L  L  L L +N   G IP S+  +++L SLDLS N+ SGE+
Sbjct: 242 DLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 289 PRQFLSGCFSLSFLSLSDNHLQGE--VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 346
           P + +    +L  L L  N+  G+  V   +   L  L L +N FSG+I   L K  +L 
Sbjct: 301 P-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

Query: 347 ELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNL-SSLRRLYMHMNAFNGS 405
            LDLS N L G+IP    +   L  L +  N L G +P S     SLRR+ +  N+F+G 
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419

Query: 406 IPGALRRSLSLTVLDLRDNEFSG 428
           +P    +   +  LD+ +N   G
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQG 442

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  136 bits (345), Expect = 1e-34
 Identities = 129/382 (33%), Positives = 186/382 (48%), Gaps = 37/382 (9%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           + NL  LDLS N L G +   + + + +KVLDL  N L G + + + N+ SLE+L+L   
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL--- 195

Query: 113 NFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILL 172
                                 SN LV     E   +   +   L   N S + +P  + 
Sbjct: 196 ---------------------ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIG 233

Query: 173 QQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD---LLRLD 229
               L  +DL +N L G  PS  L N   L  L+L  N LSG   +P S      L+ LD
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLD 290

Query: 230 ISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELP 289
           +S N  S ++P  + + L  L  L+L  N F G+IP +++ + RL+ L L SN FSGE+P
Sbjct: 291 LSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 290 RQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE 347
           +  L    +L+ L LS N+L GE+     +S NL  L L +N   G+I   L    SL  
Sbjct: 350 KN-LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408

Query: 348 LDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPS-SFNLSSLRRLYMHMNAFNGSI 406
           + L +N   G++P  F  L  + FLDIS N L G + S  +++ SL+ L +  N F G +
Sbjct: 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468

Query: 407 PGALRRSLSLTVLDLRDNEFSG 428
           P +   S  L  LDL  N+FSG
Sbjct: 469 PDSF-GSKRLENLDLSRNQFSG 489

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  132 bits (334), Expect = 2e-33
 Identities = 120/383 (31%), Positives = 178/383 (46%), Gaps = 37/383 (9%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           ++K+L  + L  NNL G +   +  LT +  LDL  N LTG + S + N+K+L+YL L  
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
           N   G     S+ +  KL    LS++ +  E                        +P ++
Sbjct: 270 NKLSGPIP-PSIFSLQKLISLDLSDNSLSGE------------------------IPELV 304

Query: 172 LQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH-DLLRLDI 230
           +Q  +L  + L  N   G  P   L +  +L  L L +N  SG       KH +L  LD+
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363

Query: 231 SHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290
           S N  + ++P  +      L  L L  N  EG IP S+   + L  + L  N+FSGELP 
Sbjct: 364 STNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

Query: 291 QFLSGCFSLSFLSLSDNHLQGEVVFP--NSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 348
           +F      + FL +S+N+LQG +     +  +L  L L  N F G + D    +  L  L
Sbjct: 423 EFTKLPL-VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENL 480

Query: 349 DLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLY---MHMNAFNGS 405
           DLS N   G +P   G+LS L  L +SEN+L G +P    LSS ++L    +  N  +G 
Sbjct: 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE--LSSCKKLVSLDLSHNQLSGQ 538

Query: 406 IPGALRRSLSLTVLDLRDNEFSG 428
           IP +      L+ LDL  N+ SG
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSG 561

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  121 bits (304), Expect = 2e-29
 Identities = 103/358 (28%), Positives = 160/358 (44%), Gaps = 57/358 (15%)

Query: 75  SNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKL 134
           +N + +  +DLS   ++G + S I  +  ++ ++L +N   G    +         +F  
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD---------IFTT 116

Query: 135 SNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSW 194
           S+S                                       LR+++LS+N   G  P  
Sbjct: 117 SSS---------------------------------------LRYLNLSNNNFTGSIPRG 137

Query: 195 LLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR-LDISHNKFSCQLPGNMGKILPELLSL 253
            + N   L+TL L NN LSG           L+ LD+  N    ++P ++   L  L  L
Sbjct: 138 SIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFL 193

Query: 254 NLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV 313
            L+ N   G+IP  + +MK L+ + L  NN SGE+P + + G  SL+ L L  N+L G +
Sbjct: 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPI 252

Query: 314 --VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQF 371
                N  NL +L+L  N  SG I   +     L+ LDLS+N L G+IP     L  L+ 
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312

Query: 372 LDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           L +  N   G +P +  +L  L+ L +  N F+G IP  L +  +LTVLDL  N  +G
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  120 bits (302), Expect = 3e-29
 Identities = 106/318 (33%), Positives = 149/318 (46%), Gaps = 38/318 (11%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           + +L+NL  L L  NN  G +   L++L  ++VL L SN+ +G +   +    +L  L L
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363

Query: 110 DDNNFEGLF--SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ-LKALNLRNCSLQA 166
             NN  G       S  N  KL +F  SNSL   E E    L   + L+ + L++ S   
Sbjct: 364 STNNLTGEIPEGLCSSGNLFKLILF--SNSL---EGEIPKSLGACRSLRRVRLQDNSFSG 418

Query: 167 -LPSILLQQLDLRFIDLSHNKLQGIFPS--WLLQNNTKLDTLYLLNNSLSGNFQLPSSKH 223
            LPS   +   + F+D+S+N LQG   S  W +     L  L L  N   G         
Sbjct: 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM---PSLQMLSLARNKFFGGLPDSFGSK 475

Query: 224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN 283
            L  LD+S N+FS  +P  +G  L EL+ L LSEN   G IP  +S  K+L SLDLS N 
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGS-LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 284 FSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKAT 343
            SG++P  F S    LS L LS N L                      SG+I   L    
Sbjct: 535 LSGQIPASF-SEMPVLSQLDLSQNQL----------------------SGEIPKNLGNVE 571

Query: 344 SLLELDLSNNMLYGQIPP 361
           SL+++++S+N L+G +P 
Sbjct: 572 SLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.6 bits (204), Expect = 8e-17
 Identities = 75/264 (28%), Positives = 116/264 (43%), Gaps = 54/264 (20%)

Query: 49  GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
           G+C   NL +L L  N+L G +   L     ++ + L  N  +G L S    +  + +L 
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNL-RNCSLQAL 167
           + +NN +G                       +I + ++  +P   L+ L+L RN     L
Sbjct: 435 ISNNNLQG-----------------------RINSRKWD-MP--SLQMLSLARNKFFGGL 468

Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 227
           P        L  +DLS N+  G  P  L                  G+        +L++
Sbjct: 469 PD-SFGSKRLENLDLSRNQFSGAVPRKL------------------GSLS------ELMQ 503

Query: 228 LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGE 287
           L +S NK S ++P  +     +L+SL+LS N   G+IP+S SEM  L  LDLS N  SGE
Sbjct: 504 LKLSENKLSGEIPDELSSC-KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562

Query: 288 LPRQFLSGCFSLSFLSLSDNHLQG 311
           +P+  L    SL  +++S NHL G
Sbjct: 563 IPKN-LGNVESLVQVNISHNHLHG 585

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.2 bits (190), Expect = 4e-15
 Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383
           L L+N    G I + +SK   L  ++LS N + G IPP  G+++ L+ LD+S N   GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 384 PSSF-NLSSLRRLYMHMNAFNGSIPGAL-RRSLSLTVLDLRDN 424
           P S   L+SLR L ++ N+ +G +P AL  R L     +  DN
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 238 QLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF 297
            +P ++ K L  L S+NLS N   G IP S+  +  LE LDLS N+F+G +P   L    
Sbjct: 433 FIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLT 490

Query: 298 SLSFLSLSDNHLQGEV 313
           SL  L+L+ N L G V
Sbjct: 491 SLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 47/175 (26%), Positives = 66/175 (37%), Gaps = 51/175 (29%)

Query: 236 SCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSG 295
            CQ     GK   +   L L   G  G IP+ +S+++ L+S++LS N+  G +P      
Sbjct: 408 DCQFDSTKGKWFID--GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL--- 462

Query: 296 CFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 355
                                                G I       TSL  LDLS N  
Sbjct: 463 -------------------------------------GSI-------TSLEVLDLSYNSF 478

Query: 356 YGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHM--NAFNGSIPG 408
            G IP   G L+ L+ L+++ N L G VP++     L R   +   NA    IPG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 24/72 (33%), Positives = 45/72 (62%)

Query: 45  FVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSL 104
           F+   I +L++L  ++LS N++ G++ P L ++T ++VLDLS N   G++   +  + SL
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 105 EYLSLDDNNFEG 116
             L+L+ N+  G
Sbjct: 493 RILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 202 LDTLYLLNNSLSGNFQLP---SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSEN 258
           +D L L N  L G   +P   S    L  +++S N     +P ++G I   L  L+LS N
Sbjct: 420 IDGLGLDNQGLRG--FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYN 476

Query: 259 GFEGRIPSSMSEMKRLESLDLSSNNFSGELP 289
            F G IP S+ ++  L  L+L+ N+ SG +P
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 32/238 (13%)

Query: 55  NLVELDLSKNNLYGHLSPCLSNLTHI---KVLDLSSNQLTGNLQSVIA-----NIKSLEY 106
            L ELDLS N L       L +L      + L L++N L      ++A        +LE 
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 107 LSLDDNNFEGLFSF---NSLKNHSKLQVFKLSNSLVKIE--TEEFPGLPEYQ-LKALNLR 160
           L L  N  EG        +L+ +  L+   L+N+ +          GL     L+ L+L 
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 161 NCSL-----QALPSILLQQLDLRFIDLSHNKL--QGI--FPSWLLQNNTKLDTLYLLNNS 211
           N  L      AL   L     L  ++L  N L   G     S LL  N  L TL L  N 
Sbjct: 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

Query: 212 L--SGNFQLP---SSKHDLLRLDISHNKFSCQLPGNMGKIL----PELLSLNLSENGF 260
           +   G   L    + K  LL LD+  NKF  +    + + L     EL SL + ++ F
Sbjct: 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 72/318 (22%), Positives = 104/318 (32%), Gaps = 73/318 (22%)

Query: 142 ETEEFPGLPEYQLKALNLRNCSLQ-----ALPSILLQQLDLRFIDLSHNKLQGIFPSWL- 195
            TE  P L    L+ L L   +L      AL S L  Q  L+ + LS N+   I      
Sbjct: 15  ATELLPKLL--CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQS 72

Query: 196 ----LQNNTKLDTLYLLNNSLS----GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKIL 247
               L     L  L L +N+L     G  +       L  L +++N    +    + K L
Sbjct: 73  LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 248 PELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF----SLSFLS 303
            +L                       LE L L  N   G      L+        L  L+
Sbjct: 133 KDLPP--------------------ALEKLVLGRNRLEGASCEA-LAKALRANRDLKELN 171

Query: 304 LSDNHLQGE------VVFPNSTNLCWLYLNNNHF----SGKIQDGLSKATSLLELDLSNN 353
           L++N +              + NL  L LNNN      +  + + L+   SL  L+L +N
Sbjct: 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

Query: 354 MLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRS 413
                      NL+      ++   L  +        SL  L +  N         L   
Sbjct: 232 -----------NLTDAGAAALASALLSPN-------ISLLTLSLSCNDITDDGAKDLAEV 273

Query: 414 L----SLTVLDLRDNEFS 427
           L    SL  LDLR N+F 
Sbjct: 274 LAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 67/279 (24%), Positives = 104/279 (37%), Gaps = 41/279 (14%)

Query: 52  ELKNLVELDLSKNNL-YGHLSPCLSNLTH---IKVLDLSSNQLTGNLQSVIA------NI 101
           +L  L  L L  N L         S L     +K L LS N+     + + +        
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 102 KSLEYLSLDDNNF--EGLFSFNSLKNHSKLQVFKLSNSLVKIETEEF--PGLPEYQ--LK 155
             L+ L L DN    +G     SL   S LQ  KL+N+ +          GL +    L+
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140

Query: 156 ALNLRNCSL---------QALPSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTL 205
            L L    L         +AL +   L++L+L    +    ++ +     L+ N  L+ L
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG--LKANCNLEVL 198

Query: 206 YLLNNSLS--GNFQL---PSSKHDLLRLDISHNKFS----CQLPGNMGKILPELLSLNLS 256
            L NN L+  G   L    +S   L  L++  N  +      L   +      LL+L+LS
Sbjct: 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258

Query: 257 ENGFE----GRIPSSMSEMKRLESLDLSSNNFSGELPRQ 291
            N         +   ++E + L  LDL  N F  E  + 
Sbjct: 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 49/225 (21%), Positives = 83/225 (36%), Gaps = 81/225 (36%)

Query: 46  VNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
           +N+   ++ +L  L L++N  +G L P       ++ LDLS NQ +G +   + ++  L 
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502

Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
            L L +N   G                                                 
Sbjct: 503 QLKLSENKLSG------------------------------------------------- 513

Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD- 224
            +P  L     L  +DLSHN+L G                           Q+P+S  + 
Sbjct: 514 EIPDELSSCKKLVSLDLSHNQLSG---------------------------QIPASFSEM 546

Query: 225 --LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS 267
             L +LD+S N+ S ++P N+G +   L+ +N+S N   G +PS+
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNV-ESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 73/264 (27%), Positives = 110/264 (41%), Gaps = 15/264 (5%)

Query: 74  LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK 133
            S+L+ +  LDL S     +L      +  L   SLD N      + + L   + L    
Sbjct: 63  PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLD 122

Query: 134 LSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPS 193
           L N+ +  +     GL +  LK L+L +  +++LPS L    +L+ +DLS N L  +   
Sbjct: 123 LDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--P 179

Query: 194 WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSL 253
            LL N + L+ L L  N +S           L  LD+S N    +L  ++   L  L  L
Sbjct: 180 KLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS-NNSIIELLSSLSN-LKNLSGL 237

Query: 254 NLSENGFEGRIPSSMSEMKRLESLDLSSN---NFSGELPRQFLSGCFSLSFLSLSDNHLQ 310
            LS N  E  +P S+  +  LE+LDLS+N   + S            +L  L LS N L 
Sbjct: 238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLT------NLRELDLSGNSLS 290

Query: 311 GEVVFPNSTNLCWLYLNNNHFSGK 334
             +       L    L N   + K
Sbjct: 291 NALPLIALLLLLLELLLNLLLTLK 314

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 23/81 (28%)

Query: 348 LDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIP 407
           L L N  L G IP     L  LQ +++S N + G++P S                 GSI 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----------------GSIT 466

Query: 408 GALRRSLSLTVLDLRDNEFSG 428
                   L VLDL  N F+G
Sbjct: 467 S-------LEVLDLSYNSFNG 480

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 59  LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
           L L    L G +   +S L H++ ++LS N + GN+   + +I SLE L L  N+F G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 119 SFNSLKNHSKLQVFKLS-NSL 138
              SL   + L++  L+ NSL
Sbjct: 483 P-ESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 153 QLKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS 211
            LK+L+L N  L  +P    + L  L+ +DLS N L  I P         L +L L  N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA-FSGLPSLRSLDLSGNN 59

Query: 212 L 212
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 68/208 (32%), Positives = 99/208 (47%), Gaps = 10/208 (4%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLT-HIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
           EL NL  LDL  NN+   + P +  L  ++K LDLS N++  +L S + N+ +L+ L L 
Sbjct: 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171

Query: 111 DNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
            N+   L     L N S L    LS + +  +      L    L+ L+L N S+  L S 
Sbjct: 172 FNDLSDL--PKLLSNLSNLNNLDLSGNKI-SDLPPEIELL-SALEELDLSNNSIIELLSS 227

Query: 171 LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDI 230
           L    +L  ++LS+NKL        + N + L+TL L NN +S +     S  +L  LD+
Sbjct: 228 LSNLKNLSGLELSNNKL--EDLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDL 284

Query: 231 SHNKFSCQLPGNMGKILPELLSLNLSEN 258
           S N  S  LP     +L   L LNL   
Sbjct: 285 SGNSLSNALPLIALLLLLLELLLNLLLT 312

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 55  NLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
           NL  LDLS N L   +       L ++KVLDLS N LT       + + SL  L L  NN
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 114 F 114
            
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	428
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.46
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.37
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.36
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.29
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.12
KOG4341	483	consensus F-box protein containing LRR [General fu	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.02
KOG4341	483	consensus F-box protein containing LRR [General fu	98.98
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.86
PLN03150	623	hypothetical protein; Provisional	98.86
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
PLN03150	623	hypothetical protein; Provisional	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.65
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.01
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.86
PRK15386	426	type III secretion protein GogB; Provisional	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.67
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.64
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.2
KOG4308	478	consensus LRR-containing protein [Function unknown	95.61
KOG4308	478	consensus LRR-containing protein [Function unknown	95.41
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.29
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.2
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.54
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.06
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.65
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.0
smart00370	26	LRR Leucine-rich repeats, outliers.	87.0

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-38  Score=328.62  Aligned_cols=396  Identities=29%  Similarity=0.417  Sum_probs=271.9

Q ss_pred             cccceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhcc
Q 042919           21 QKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN  100 (428)
Q Consensus        21 ~~~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  100 (428)
                      ...+++++.+.+ +.      +...+|.+++++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..
T Consensus       162 ~l~~L~~L~L~~-n~------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        162 SFSSLKVLDLGG-NV------LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             cCCCCCEEECcc-Cc------ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            346778888876 32      23344566778888888888888877777777888888888888888777667777778


Q ss_pred             CCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc-ccCCCCCCCcCCccEEEcCCCCC-ccchhHhhhCCCcc
Q 042919          101 IKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNLRNCSL-QALPSILLQQLDLR  178 (428)
Q Consensus       101 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~  178 (428)
                      +++|++|++++|.+.+.. +..++.+++|++|++++|.+.. .+..+...+  +|+.|++++|.+ ..+|..+..+++|+
T Consensus       235 l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~  311 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ--KLISLDLSDNSLSGEIPELVIQLQNLE  311 (968)
T ss_pred             CCCCCEEECcCceecccc-ChhHhCCCCCCEEECcCCeeeccCchhHhhcc--CcCEEECcCCeeccCCChhHcCCCCCc
Confidence            888888888887776543 3467777777777777776532 233333333  377777777766 35566666677777


Q ss_pred             EEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCC-cccCCCCCCCccEEecCCCccccCCCchhhh------------
Q 042919          179 FIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG-NFQLPSSKHDLLRLDISHNKFSCQLPGNMGK------------  245 (428)
Q Consensus       179 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------  245 (428)
                      .|++++|.+....+..+ ..+++|+.|++++|.+.+ .+.....+++|+.|++++|.+.+..+..+..            
T Consensus       312 ~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  390 (968)
T PLN00113        312 ILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN  390 (968)
T ss_pred             EEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence            77777776665555444 456667777776666553 2222344555666666665554444443332            


Q ss_pred             -----------cCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc
Q 042919          246 -----------ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV  314 (428)
Q Consensus       246 -----------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  314 (428)
                                 .+++|+.|++.+|.+.+..|..+..++.|+.+++++|.+.+..+.. +..+++|+.|++++|.+....+
T Consensus       391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p  469 (968)
T PLN00113        391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLP  469 (968)
T ss_pred             EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecC
Confidence                       1445555555555554444555555555555555555555333322 3345666666666666553332


Q ss_pred             -cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccC
Q 042919          315 -FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSL  392 (428)
Q Consensus       315 -~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L  392 (428)
                       ....++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+.+|..+.++++|+.|+|++|.+++..+..+ .+++|
T Consensus       470 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  549 (968)
T PLN00113        470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL  549 (968)
T ss_pred             cccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence             3345678888888888877777788888899999999999888888888899999999999999988888777 78899


Q ss_pred             ceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          393 RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       393 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      +.|++++|++.+..|..+..++.|+.|++++|+++|
T Consensus       550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            999999999988889999999999999999998875

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2e-38  Score=328.39  Aligned_cols=392  Identities=32%  Similarity=0.476  Sum_probs=306.7

Q ss_pred             cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCC
Q 042919           23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK  102 (428)
Q Consensus        23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  102 (428)
                      ..++++.+.. +.      +....|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.+++
T Consensus       140 ~~L~~L~Ls~-n~------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  212 (968)
T PLN00113        140 PNLETLDLSN-NM------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK  212 (968)
T ss_pred             CCCCEEECcC-Cc------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence            4577777766 22      3344567889999999999999999888999999999999999999999888899999999


Q ss_pred             CCcEEeCCCCccCCccccccccCCCCCcEEEccCCccc-cccCCCCCCCcCCccEEEcCCCCC-ccchhHhhhCCCccEE
Q 042919          103 SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVK-IETEEFPGLPEYQLKALNLRNCSL-QALPSILLQQLDLRFI  180 (428)
Q Consensus       103 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L  180 (428)
                      +|++|++++|.+.+..+ ..++++++|++|++++|... ..+..+...+  +|++|++++|.+ ..+|..+..+++|+.|
T Consensus       213 ~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  289 (968)
T PLN00113        213 SLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK--NLQYLFLYQNKLSGPIPPSIFSLQKLISL  289 (968)
T ss_pred             CccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChhHhCCC--CCCEEECcCCeeeccCchhHhhccCcCEE
Confidence            99999999999876533 57899999999999998774 3444555554  499999999988 4678889999999999


Q ss_pred             EccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc-ccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCC
Q 042919          181 DLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN-FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENG  259 (428)
Q Consensus       181 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  259 (428)
                      ++++|.+....+..+ ..+++|+.|++++|.+.+. ......+++|+.|++++|.+.+..+..+.. +++|+.|++++|.
T Consensus       290 ~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~  367 (968)
T PLN00113        290 DLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNN  367 (968)
T ss_pred             ECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCe
Confidence            999999887777665 6899999999999988753 334567899999999999998788877766 8899999999998


Q ss_pred             CCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC---------------------
Q 042919          260 FEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP---------------------  316 (428)
Q Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~---------------------  316 (428)
                      +.+..+..+..+++|+.+++.+|.+.+..+.. +..+++|+.|++.+|.+.+..+  +.                     
T Consensus       368 l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  446 (968)
T PLN00113        368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS  446 (968)
T ss_pred             eEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence            87666766666666777777766665444433 3455666666666655543221  33                     


Q ss_pred             ---CCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccC
Q 042919          317 ---NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSL  392 (428)
Q Consensus       317 ---~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L  392 (428)
                         .+++|+.|++++|.+.+..+..+ ..++|+.|++++|++++..|..+.++++|+.|++++|.+.+..+..+ .+++|
T Consensus       447 ~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  525 (968)
T PLN00113        447 RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL  525 (968)
T ss_pred             hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence               44555555555555544333332 34667777777777777777778888888888998888888777777 78889


Q ss_pred             ceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          393 RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       393 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      +.|++++|.+++..|..++.+++|+.|++++|+++|
T Consensus       526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             CEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence            999999999988888888889999999999998876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-35  Score=265.02  Aligned_cols=362  Identities=26%  Similarity=0.257  Sum_probs=286.5

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK  133 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  133 (428)
                      +.-+.|++++|++..+.+..|.++++|+.+++..|.++ ..|.......+|+.|++.+|.|..+.. +.++.++.|+.||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~s-e~L~~l~alrslD  155 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTS-EELSALPALRSLD  155 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccH-HHHHhHhhhhhhh
Confidence            34567999999998888888999999999999999887 667766666789999999998887755 6788889999999


Q ss_pred             ccCCccc-cccCCCCCCCcCCccEEEcCCCCCccch-hHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCc
Q 042919          134 LSNSLVK-IETEEFPGLPEYQLKALNLRNCSLQALP-SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS  211 (428)
Q Consensus       134 l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  211 (428)
                      ++.|.+. +....|+...  ++++|++++|.|..+. ..+..+.+|..|.++.|+++ .+|...|+++++|+.|++..|.
T Consensus       156 LSrN~is~i~~~sfp~~~--ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKV--NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhchhhcccCCCCCCCC--CceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccc
Confidence            9988774 3444454433  4999999999887664 34556668899999999988 5666666789999999999888


Q ss_pred             cCCc-ccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919          212 LSGN-FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR  290 (428)
Q Consensus       212 ~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  290 (428)
                      +... .-....+++|+.|.+..|.+. .+.+..+-++.+++.|++..|.+......++.++++|+.|+++.|.+. .+..
T Consensus       233 irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~  310 (873)
T KOG4194|consen  233 IRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHI  310 (873)
T ss_pred             eeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-eeec
Confidence            7653 335567888888888888886 444554445888899999888888777788888889999999888876 5555


Q ss_pred             hhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccccc---CCcccCC
Q 042919          291 QFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ---IPPWFGN  365 (428)
Q Consensus       291 ~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~  365 (428)
                      ...+.+++|+.|+++.|.+.....  +..+..|++|.|+.|.++.....+|..+.+|++|+|++|.+...   ....|.+
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g  390 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG  390 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence            556678889999998888876544  77788888899988888877777788888899999988876532   3446777


Q ss_pred             CCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCC
Q 042919          366 LSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRD  423 (428)
Q Consensus       366 ~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  423 (428)
                      +++|++|++.||++..+...++ .+++|+.|++.+|.|-.+.|.+|..+ +|++|.+..
T Consensus       391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            8889999999998887777777 88899999999998887888888888 888777654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2e-34  Score=257.95  Aligned_cols=363  Identities=25%  Similarity=0.314  Sum_probs=299.5

Q ss_pred             cEEeccCCcCCCCchHhhhcC--CCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEc
Q 042919           57 VELDLSKNNLYGHLSPCLSNL--THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKL  134 (428)
Q Consensus        57 ~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  134 (428)
                      +.|+.++..+.......+...  +.-+.|++++|.+....+..|.++++|+++++.+|.++.+  +...+...+|++|++
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I--P~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI--PRFGHESGHLEKLDL  132 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhc--ccccccccceeEEee
Confidence            456666665553323333332  3556799999999988888999999999999999998877  334455567999999


Q ss_pred             cCCcc-ccccCCCCCCCcCCccEEEcCCCCCccchhHhhhC-CCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCcc
Q 042919          135 SNSLV-KIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQ-LDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL  212 (428)
Q Consensus       135 ~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  212 (428)
                      .+|.+ .+....+...+.  |+.++++.|.+.+++..-+.- .+++.|++++|.++......| ..+.+|..|.+++|++
T Consensus       133 ~~N~I~sv~se~L~~l~a--lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPA--LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRNRI  209 (873)
T ss_pred             eccccccccHHHHHhHhh--hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc-cccchheeeecccCcc
Confidence            99988 445555666665  999999999998887654444 599999999999996555444 6888999999999999


Q ss_pred             CCcccCCC-CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchh
Q 042919          213 SGNFQLPS-SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQ  291 (428)
Q Consensus       213 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  291 (428)
                      +..+.-.. .+++|+.|++..|++. ..-...++++++|+.|.+..|++.......|..+.++++|++..|++. .....
T Consensus       210 ttLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g  287 (873)
T KOG4194|consen  210 TTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEG  287 (873)
T ss_pred             cccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcc
Confidence            88655444 5999999999999985 333344566999999999999998888888999999999999999987 55556


Q ss_pred             hhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCC
Q 042919          292 FLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGL  369 (428)
Q Consensus       292 ~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L  369 (428)
                      .+-++.+|+.|+++.|.|.....  ++.+++|++|+|+.|.++...+..|..+..|++|.|+.|.++......|..+.+|
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL  367 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL  367 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence            66789999999999999986544  7788999999999999998888999999999999999999987777788999999


Q ss_pred             cEEeCCCCcCCcCCCC---cc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCcc
Q 042919          370 QFLDISENQLCGSVPS---SF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       370 ~~L~L~~~~~~~~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  426 (428)
                      ++|||+.|.++..+.+   .+ .+++|+.|++.||++..+.-.+|.+++.|+.|||.+|+|
T Consensus       368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence            9999999987654443   33 799999999999999967778999999999999999986

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=8.2e-32  Score=243.49  Aligned_cols=363  Identities=26%  Similarity=0.318  Sum_probs=305.9

Q ss_pred             cCCCCCcEEeccCCcCC-CCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCC
Q 042919           51 CELKNLVELDLSKNNLY-GHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKL  129 (428)
Q Consensus        51 ~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  129 (428)
                      +-+|..|-+++++|.+. +..|..+..+++++.|.+..+++. ..|..++.+.+|++|.+.+|++..+  ...++.++.|
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v--hGELs~Lp~L   80 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV--HGELSDLPRL   80 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh--hhhhccchhh
Confidence            45678889999999987 678899999999999999999887 6788999999999999999998877  3478899999


Q ss_pred             cEEEccCCcccc--ccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEe
Q 042919          130 QVFKLSNSLVKI--ETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYL  207 (428)
Q Consensus       130 ~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  207 (428)
                      +.+.+..|....  .+.....+.  .|..+++++|++.+.|..+....++-+|++++|++. .+|..++-+++.|-.|++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~--dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLK--DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccc--cceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcc
Confidence            999999877743  233333333  499999999999999999999999999999999998 567766778999999999


Q ss_pred             cCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCC-CCCCccccCCCCCCEEECcCcccCC
Q 042919          208 LNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFE-GRIPSSMSEMKRLESLDLSSNNFSG  286 (428)
Q Consensus       208 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~  286 (428)
                      +.|.+...++....+..|++|.+++|.+...-...+.+ +++|++|.+++.+-+ .-.|..+..+.+|+.++++.|.+. 
T Consensus       158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence            99999888777788899999999999864211112222 567888888886443 457788889999999999999886 


Q ss_pred             CCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccc-cCCcccC
Q 042919          287 ELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG-QIPPWFG  364 (428)
Q Consensus       287 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~  364 (428)
                      ..|.- +-.+++|+.|++++|.|+.... ...-.+|++|+++.|+++ ..+.+++.+++|+.|.+.+|+++- -+|.+++
T Consensus       236 ~vPec-ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG  313 (1255)
T KOG0444|consen  236 IVPEC-LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG  313 (1255)
T ss_pred             cchHH-HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence            55554 4578999999999999987665 445578999999999998 688899999999999999998873 4899999


Q ss_pred             CCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCc
Q 042919          365 NLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       365 ~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  425 (428)
                      .+..|+.++.++|++. ..|+.+ .|..|+.|.++.|++. .+|+++..++.|+.||++.||
T Consensus       314 KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  314 KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            9999999999999887 777777 8999999999999988 899999999999999999996

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=1.1e-30  Score=224.15  Aligned_cols=363  Identities=28%  Similarity=0.370  Sum_probs=195.5

Q ss_pred             cccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCC
Q 042919           49 GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSK  128 (428)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  128 (428)
                      +++.+..++.++.+.+++. .+|+.+..+..|++++.+.+++. ..+..++.+..++.++..+|++...  ++.+..+.+
T Consensus        86 aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~sl--p~~~~~~~~  161 (565)
T KOG0472|consen   86 AIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSL--PEDMVNLSK  161 (565)
T ss_pred             HHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccC--chHHHHHHH
Confidence            3333344444444433333 33333444444444444444433 2333344444444444444444433  334444445


Q ss_pred             CcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEec
Q 042919          129 LQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLL  208 (428)
Q Consensus       129 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  208 (428)
                      |..+++.++.....+.......  .|++++...|.++.+|..++.+.+|..|++..|.+. ..|.  +.+|+.|++++++
T Consensus       162 l~~l~~~~n~l~~l~~~~i~m~--~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g  236 (565)
T KOG0472|consen  162 LSKLDLEGNKLKALPENHIAMK--RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVG  236 (565)
T ss_pred             HHHhhccccchhhCCHHHHHHH--HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhc
Confidence            5555555444433333322222  255555555555555555555555555555555544 2221  2344444444444


Q ss_pred             CCccCCcccCC-CCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccC--
Q 042919          209 NNSLSGNFQLP-SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS--  285 (428)
Q Consensus       209 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--  285 (428)
                      .|.+....+.. ..++++..||+.+|++. ++|+.++- +.+|++|++++|.++ ..|..++++ +|+.|-+.+|++.  
T Consensus       237 ~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  237 ENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI  312 (565)
T ss_pred             ccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH
Confidence            44443322222 24555666666666665 55555554 555666666666655 344455555 5555555554321  


Q ss_pred             --------------------------------------------------------------CCCchhhhcCC--CCCCE
Q 042919          286 --------------------------------------------------------------GELPRQFLSGC--FSLSF  301 (428)
Q Consensus       286 --------------------------------------------------------------~~~~~~~~~~~--~~L~~  301 (428)
                                                                                    +.+|..+|..-  .-...
T Consensus       313 Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~  392 (565)
T KOG0472|consen  313 RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTS  392 (565)
T ss_pred             HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEE
Confidence                                                                          02333333221  12444


Q ss_pred             EeCCCcccccc-----------------------cc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccc
Q 042919          302 LSLSDNHLQGE-----------------------VV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY  356 (428)
Q Consensus       302 L~l~~~~~~~~-----------------------~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  356 (428)
                      +++++|++.+.                       .+  ++.+++|+.|++++|.+. +.|..+..+..|+.|+++.|.+.
T Consensus       393 VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr  471 (565)
T KOG0472|consen  393 VNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR  471 (565)
T ss_pred             EecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc
Confidence            55555544311                       11  445567777777766655 34444556666777777777666


Q ss_pred             ccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          357 GQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       357 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                       ..|.++.-...++.+-.++|++....+..+ .+.+|++|++.+|.+. .+|..+++|.+|++|+++|||+.
T Consensus       472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence             566666666666666667777775555545 7889999999999998 88889999999999999999974

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=7.5e-29  Score=224.45  Aligned_cols=339  Identities=25%  Similarity=0.338  Sum_probs=286.4

Q ss_pred             cCCCCCEEEccCCccC-cchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCc
Q 042919           76 NLTHIKVLDLSSNQLT-GNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQL  154 (428)
Q Consensus        76 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  154 (428)
                      -++-.+-++++++.+. ...|..+..+++++.|.+..+++..+  ++.++.+.+|++|.++.|......+.+..++.  |
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v--PeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~--L   80 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV--PEELSRLQKLEHLSMAHNQLISVHGELSDLPR--L   80 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC--hHHHHHHhhhhhhhhhhhhhHhhhhhhccchh--h
Confidence            3567788999999887 56888999999999999999988776  67899999999999999999888888888876  9


Q ss_pred             cEEEcCCCCC--ccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCC-CCCCCccEEecC
Q 042919          155 KALNLRNCSL--QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLP-SSKHDLLRLDIS  231 (428)
Q Consensus       155 ~~L~l~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~  231 (428)
                      +.+.+..|++  ..+|..++++..|+.|++++|++. +.|..+ .+-.++-.|++++|.+...+..+ ..+..|-.|+++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence            9999999988  679999999999999999999998 556655 57788899999999987654433 367778889999


Q ss_pred             CCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccC-CCCchhhhcCCCCCCEEeCCCcccc
Q 042919          232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS-GELPRQFLSGCFSLSFLSLSDNHLQ  310 (428)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~  310 (428)
                      +|.+. .+|..+.. +..|++|.+++|.+....-..+..+++|.+|.++++.-+ +.+|.. +..+.+|..++++.|.+.
T Consensus       159 ~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  159 NNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             cchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC
Confidence            99987 77777776 889999999999887554455667788899999987643 345544 567889999999999988


Q ss_pred             cccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC--cCCCCcc
Q 042919          311 GEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC--GSVPSSF  387 (428)
Q Consensus       311 ~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~--~~~~~~~  387 (428)
                      ..+. +..+++|+.|++++|.++. .......+.+|++|+++.|+++ .+|.+++.+++|++|.+.+|+++  +++....
T Consensus       236 ~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG  313 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG  313 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence            7654 8889999999999999984 4445567889999999999999 99999999999999999999864  3433333


Q ss_pred             ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCcc
Q 042919          388 NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       388 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  426 (428)
                      .+.+|+.+..++|.+. ..|+.++.|+.|++|.++.|.+
T Consensus       314 KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  314 KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             hhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence            8899999999999987 8999999999999999999864

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=3.4e-27  Score=202.80  Aligned_cols=340  Identities=28%  Similarity=0.319  Sum_probs=188.1

Q ss_pred             cccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCC
Q 042919           49 GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSK  128 (428)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  128 (428)
                      +++++.++..+++.++++....+..+. ++.|+.|+...+-++ ..|..++.+.+|..|++..|++..+   ..|.+|..
T Consensus       155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l---Pef~gcs~  229 (565)
T KOG0472|consen  155 DMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL---PEFPGCSL  229 (565)
T ss_pred             HHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC---CCCCccHH
Confidence            333444444444444444422222222 444444444433333 3344444444444444444444433   24444555


Q ss_pred             CcEEEccCCccccccCCC-CCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEe
Q 042919          129 LQVFKLSNSLVKIETEEF-PGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYL  207 (428)
Q Consensus       129 L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  207 (428)
                      |+.+.++.|.+...+.+. .+++  ++..|++.+|+++++|..+.-+.+|+.||+++|.++. .+..+ +++ +|+.|.+
T Consensus       230 L~Elh~g~N~i~~lpae~~~~L~--~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sL-gnl-hL~~L~l  304 (565)
T KOG0472|consen  230 LKELHVGENQIEMLPAEHLKHLN--SLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSL-GNL-HLKFLAL  304 (565)
T ss_pred             HHHHHhcccHHHhhHHHHhcccc--cceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCccc-ccc-eeeehhh
Confidence            555555544443322221 2222  3566666666666666666666666666666666553 22222 344 5555555


Q ss_pred             cCCccCCcc------------------------------------------cCCCCCCCccEEecCCCccccCCCchhhh
Q 042919          208 LNNSLSGNF------------------------------------------QLPSSKHDLLRLDISHNKFSCQLPGNMGK  245 (428)
Q Consensus       208 ~~~~~~~~~------------------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  245 (428)
                      .+|+++...                                          .......+.+.|++++.+++ .+|..++.
T Consensus       305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfe  383 (565)
T KOG0472|consen  305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFE  383 (565)
T ss_pred             cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHH
Confidence            555431100                                          00012233444555555444 44444433


Q ss_pred             cCC--CCcEEEccCCCCCCCCCccccCCCCCCE-EECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCc
Q 042919          246 ILP--ELLSLNLSENGFEGRIPSSMSEMKRLES-LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNL  321 (428)
Q Consensus       246 ~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~-L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L  321 (428)
                      .-.  -....++++|++. ..|..+..+..+.+ +.+++|.+  .++...++.+++|..|++++|.+.+.+. ++....|
T Consensus       384 a~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i--sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~L  460 (565)
T KOG0472|consen  384 AAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI--SFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRL  460 (565)
T ss_pred             HhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc--ccchHHHHhhhcceeeecccchhhhcchhhhhhhhh
Confidence            111  1445555555554 34444444333332 23333333  2333446678888889998887776654 6677779


Q ss_pred             ceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCc
Q 042919          322 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNA  401 (428)
Q Consensus       322 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~  401 (428)
                      +.|+++.|++. ..|........++.+-.+++++....+.++.++.+|.+||+.+|.+...++....+.+|++|.++||+
T Consensus       461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence            99999998876 46666666677777777888888666777888999999999999888666655589999999999999


Q ss_pred             CC
Q 042919          402 FN  403 (428)
Q Consensus       402 ~~  403 (428)
                      |.
T Consensus       540 fr  541 (565)
T KOG0472|consen  540 FR  541 (565)
T ss_pred             cC
Confidence            87

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-26  Score=217.80  Aligned_cols=353  Identities=31%  Similarity=0.388  Sum_probs=195.1

Q ss_pred             CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919           52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV  131 (428)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  131 (428)
                      ++-+|+.|+++++.+. ..|..+..+++|+.|+++.+.|. ..|..+.++.+|+++.+.+|.+...  +..+..+.+|++
T Consensus        43 ~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~l--P~~~~~lknl~~  118 (1081)
T KOG0618|consen   43 KRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSL--PASISELKNLQY  118 (1081)
T ss_pred             heeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcC--chhHHhhhcccc
Confidence            4455999999998887 66777888999999999999887 5677888999999999999987665  568889999999


Q ss_pred             EEccCCccccccCCCCCCCcCCccEEEcCCC-CC-------------------ccchhHhhhCCCccE-EEccCCcCCCC
Q 042919          132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNC-SL-------------------QALPSILLQQLDLRF-IDLSHNKLQGI  190 (428)
Q Consensus       132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~-------------------~~l~~~~~~~~~L~~-L~l~~~~~~~~  190 (428)
                      |+++.|.+...+........  +.++..++| .+                   ..++....   ++++ |++..|.+. .
T Consensus       119 LdlS~N~f~~~Pl~i~~lt~--~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~---~l~~~ldLr~N~~~-~  192 (1081)
T KOG0618|consen  119 LDLSFNHFGPIPLVIEVLTA--EEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY---NLTHQLDLRYNEME-V  192 (1081)
T ss_pred             cccchhccCCCchhHHhhhH--HHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh---hhheeeecccchhh-h
Confidence            99998888666665544433  445555544 11                   11222222   2333 666666554 1


Q ss_pred             CchhhhhcC--------------------CCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCC
Q 042919          191 FPSWLLQNN--------------------TKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPEL  250 (428)
Q Consensus       191 ~~~~~~~~~--------------------~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  250 (428)
                      ..   +..+                    ++++.|+.+.|.+.. ........+|+.++++.+.+. .+|.++.. +.+|
T Consensus       193 ~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~-~~~~p~p~nl~~~dis~n~l~-~lp~wi~~-~~nl  266 (1081)
T KOG0618|consen  193 LD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT-LDVHPVPLNLQYLDISHNNLS-NLPEWIGA-CANL  266 (1081)
T ss_pred             hh---hhhccchhhhhhhhcccceEEecCcchheeeeccCccee-eccccccccceeeecchhhhh-cchHHHHh-cccc
Confidence            11   1222                    334444444444441 122234567888888888887 66655554 7888


Q ss_pred             cEEEccCCCCCCCCC-----------------------ccccCCCCCCEEECcCcccCCCCchhhhcCCCC-CCEEeCCC
Q 042919          251 LSLNLSENGFEGRIP-----------------------SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS-LSFLSLSD  306 (428)
Q Consensus       251 ~~L~l~~~~~~~~~~-----------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~  306 (428)
                      +.+...+|.+. ..+                       ......++|++|++..|.+. .+|..++.-... ++.++.+.
T Consensus       267 e~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~  344 (1081)
T KOG0618|consen  267 EALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSS  344 (1081)
T ss_pred             eEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhh
Confidence            88887777654 233                       33444556666666666654 344333322211 22222222


Q ss_pred             cccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCC
Q 042919          307 NHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP  384 (428)
Q Consensus       307 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  384 (428)
                      +.+.....  -..++.|+.|++.+|.+++.....+..+.+|+.|+|++|++.......+.+++.|+.|+|+||+++... 
T Consensus       345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-  423 (1081)
T KOG0618|consen  345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-  423 (1081)
T ss_pred             ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-
Confidence            22221111  112234444455555554444444444455555555555444333334444444555555555444222 


Q ss_pred             Ccc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCc
Q 042919          385 SSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       385 ~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  425 (428)
                      ... .+..|++|...+|.+. ++| .+..++.|+.+|++-|.
T Consensus       424 ~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  424 DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence            222 4444444444444444 444 33444444444444443

>PLN03210 Resistant to P

Probab=99.90  E-value=8.4e-22  Score=205.15  Aligned_cols=340  Identities=22%  Similarity=0.254  Sum_probs=241.7

Q ss_pred             eecccccCCCCCcEEeccCCcC------CCCchHhhhcCC-CCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCc
Q 042919           45 FVNTGICELKNLVELDLSKNNL------YGHLSPCLSNLT-HIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGL  117 (428)
Q Consensus        45 ~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  117 (428)
                      +.+.+|.++++|+.|.+..+..      ...+|..+..++ +|+.|.+.++.+. ..|..+ .+.+|+.|++.++.+..+
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccc
Confidence            3456788999999999976532      224556666654 6999999998776 556665 578999999999988765


Q ss_pred             cccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCC-CccchhHhhhCCCccEEEccCCcCCCCCchhhh
Q 042919          118 FSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCS-LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLL  196 (428)
Q Consensus       118 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  196 (428)
                        +..+..+++|+.++++++........+...+  +|++|++.+|. +..+|..+..+++|+.|++++|.....++..+ 
T Consensus       627 --~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~--~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        627 --WDGVHSLTGLRNIDLRGSKNLKEIPDLSMAT--NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             --ccccccCCCCCEEECCCCCCcCcCCccccCC--cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence              4567889999999999765433333344433  59999999975 48899999999999999999987555666544 


Q ss_pred             hcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCC-------CCCCcccc
Q 042919          197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFE-------GRIPSSMS  269 (428)
Q Consensus       197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~~l~  269 (428)
                       .+++|+.|.+++|.....  .+....+|++|+++++.+. .+|..+ . +++|++|.+.++...       ...+....
T Consensus       702 -~l~sL~~L~Lsgc~~L~~--~p~~~~nL~~L~L~~n~i~-~lP~~~-~-l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~  775 (1153)
T PLN03210        702 -NLKSLYRLNLSGCSRLKS--FPDISTNISWLDLDETAIE-EFPSNL-R-LENLDELILCEMKSEKLWERVQPLTPLMTM  775 (1153)
T ss_pred             -CCCCCCEEeCCCCCCccc--cccccCCcCeeecCCCccc-cccccc-c-ccccccccccccchhhccccccccchhhhh
Confidence             688999999999865432  2234568999999998876 555544 2 677888877764321       11112223


Q ss_pred             CCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc-ccccCCCCCcceeecccCccCccchhhhhcCCCCcEE
Q 042919          270 EMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL  348 (428)
Q Consensus       270 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  348 (428)
                      ..++|++|++++|.....+|.. +.++++|+.|++.+|.... .+....+++|+.|++++|......+.   ..++|+.|
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L  851 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---ISTNISDL  851 (1153)
T ss_pred             ccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---cccccCEe
Confidence            3567888888888766566655 5678888888888875332 22233678888888888864433322   24678888


Q ss_pred             EccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcC
Q 042919          349 DLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAF  402 (428)
Q Consensus       349 ~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  402 (428)
                      ++++|.++ .+|.++..+++|+.|++++|+-....+... .+++|+.+++++|.-
T Consensus       852 ~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        852 NLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             ECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            88888887 677788888888888888875433444444 678888888888863

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.89  E-value=5.4e-25  Score=207.75  Aligned_cols=265  Identities=24%  Similarity=0.251  Sum_probs=184.4

Q ss_pred             CccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCC
Q 042919          153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISH  232 (428)
Q Consensus       153 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  232 (428)
                      +++.++++.+.+..+|+++..+.+|+.++...|.+. ..+..+ ...++|+.|.+..|.+...+..+.....|++|++..
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri-~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRI-SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHH-hhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence            567777777777777777777777777777777774 444444 256677777777777666666666777888888888


Q ss_pred             CccccCCCchhhhcCCC-CcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc
Q 042919          233 NKFSCQLPGNMGKILPE-LLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG  311 (428)
Q Consensus       233 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  311 (428)
                      |++. .+|..+...... +..++.+.+.+.......=..++.|+.|++.+|.+++. ....+.++..|+.|++++|.+..
T Consensus       320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             cccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc-chhhhccccceeeeeeccccccc
Confidence            8776 556555443333 66666666666532222223456788888888888743 33446778888888888888776


Q ss_pred             ccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-c
Q 042919          312 EVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-N  388 (428)
Q Consensus       312 ~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~  388 (428)
                      ..+  +.+++.|++|+++||.++. .+..++.+..|++|...+|.+. ..| .+.+++.|+.+|++.|+++....... .
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p  474 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP  474 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence            554  7788888888888888874 4577778888888888888886 556 67888888888888888876544444 3


Q ss_pred             cccCceEEccCCcCCccCCcccccCCCCCEEECCCC
Q 042919          389 LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN  424 (428)
Q Consensus       389 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  424 (428)
                      -++|+.|+++||.-.......|..+..+...++.-+
T Consensus       475 ~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            378888888888865455666666666666665544

>PLN03210 Resistant to P

Probab=99.88  E-value=8.8e-21  Score=197.56  Aligned_cols=339  Identities=20%  Similarity=0.206  Sum_probs=238.4

Q ss_pred             CchHhhhcCCCCCEEEccCCc------cCcchhhhhccCC-CCcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc
Q 042919           69 HLSPCLSNLTHIKVLDLSSNQ------LTGNLQSVIANIK-SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI  141 (428)
Q Consensus        69 ~~~~~~~~l~~L~~L~l~~~~------~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  141 (428)
                      ..+.+|.++++|+.|.+....      +....|..+..++ +|+.|.+.++.+..+.  ..+ ...+|+.|++.++.+..
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP--~~f-~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP--SNF-RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC--CcC-CccCCcEEECcCccccc
Confidence            345678889999999886542      2223455565554 6899999888776652  223 56789999999887765


Q ss_pred             ccCCCCCCCcCCccEEEcCCCC-CccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCC
Q 042919          142 ETEEFPGLPEYQLKALNLRNCS-LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS  220 (428)
Q Consensus       142 ~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  220 (428)
                      .+..+..++  +|+.++++++. +..+|. +..+++|+.|++++|......+..+ ..+++|+.|++++|..........
T Consensus       626 L~~~~~~l~--~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        626 LWDGVHSLT--GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             cccccccCC--CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC
Confidence            554444443  59999998764 566764 6678899999999887655666654 678899999998876443333333


Q ss_pred             CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCC------CCchhhhc
Q 042919          221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG------ELPRQFLS  294 (428)
Q Consensus       221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~~~  294 (428)
                      .+++|+.|++++|.....++.    ..++|+.|++.++.+. ..|..+ .+++|++|.+.++....      ..+.....
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~  775 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTM  775 (1153)
T ss_pred             CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhh
Confidence            678899999988865434442    2468899999988876 345444 57888888887643210      11112233


Q ss_pred             CCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEE
Q 042919          295 GCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFL  372 (428)
Q Consensus       295 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  372 (428)
                      .+++|+.|++++|......+  +..+++|+.|++++|......+... ++++|+.|++++|......|..   .++|+.|
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L  851 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDL  851 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEe
Confidence            45789999998886544333  7788999999999886544444443 6889999999988544344433   3578999


Q ss_pred             eCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCc
Q 042919          373 DISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       373 ~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  425 (428)
                      +|++|.++. .|..+ .+++|+.|++++|+-...+|..+..+++|+.+++++|+
T Consensus       852 ~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        852 NLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999998874 44444 78999999999987766788888889999999999985

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=7.3e-19  Score=170.91  Aligned_cols=258  Identities=27%  Similarity=0.327  Sum_probs=160.9

Q ss_pred             CCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEe
Q 042919          128 KLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYL  207 (428)
Q Consensus       128 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  207 (428)
                      +-..|+++++.+...+..+.    .+|+.|++.+|++..+|..   .++|+.|++++|.++.. +.    ..++|+.|++
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsL-P~----lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL-PV----LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh----cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcc-cC----cccccceeec
Confidence            34455555555443333222    1466777777776666642   35677777777766632 32    2356677777


Q ss_pred             cCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCC
Q 042919          208 LNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGE  287 (428)
Q Consensus       208 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  287 (428)
                      +.|.+.....   ...+|+.|++++|.+. .++.    .+++|+.|++++|.+.. .+..   ...|+.|++++|.+. .
T Consensus       270 s~N~L~~Lp~---lp~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~  336 (788)
T PRK15387        270 FSNPLTHLPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-S  336 (788)
T ss_pred             cCCchhhhhh---chhhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccccccccCccc-c
Confidence            7766654322   2345667777777665 3433    14567777777776663 2321   234667777777765 3


Q ss_pred             CchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCC
Q 042919          288 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLS  367 (428)
Q Consensus       288 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~  367 (428)
                      +|.    ...+|+.|++++|.+...+..  ..+|+.|++++|.+.. .+..   ..+|+.|++++|.++ .+|..   .+
T Consensus       337 LP~----lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s  402 (788)
T PRK15387        337 LPT----LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PS  402 (788)
T ss_pred             ccc----cccccceEecCCCccCCCCCC--Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---cc
Confidence            442    124677777777777654332  3567777777777764 2221   356888888888887 44533   25


Q ss_pred             CCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          368 GLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       368 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      +|+.|++++|.++.. |..  +.+|+.|++++|+++ .+|..+..+++|+.|++++|+++|
T Consensus       403 ~L~~LdLS~N~LssI-P~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        403 ELKELMVSGNRLTSL-PML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             CCCEEEccCCcCCCC-Ccc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence            788888888887743 322  356778888888887 678888888888888888888876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.79  E-value=1.1e-21  Score=168.84  Aligned_cols=273  Identities=23%  Similarity=0.264  Sum_probs=177.8

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCC-CccCCccccccccCCCCCcEE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD-NNFEGLFSFNSLKNHSKLQVF  132 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L  132 (428)
                      +...+|.|+.|.|+.+++.+|..+++|+.|+|+.|.|+...|.+|.+++++.+|-+.+ |+|+++ +...+.++..|+.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l-~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL-PKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh-hhhHhhhHHHHHHH
Confidence            3567788888888888888899999999999999988888888898888887776666 777776 44567777777777


Q ss_pred             EccCCccc-cccCCCCCCCcCCccEEEcCCCCCccchh-HhhhCCCccEEEccCCcC-CCCCchhhhh----------cC
Q 042919          133 KLSNSLVK-IETEEFPGLPEYQLKALNLRNCSLQALPS-ILLQQLDLRFIDLSHNKL-QGIFPSWLLQ----------NN  199 (428)
Q Consensus       133 ~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~-~~~~~~~~~~----------~~  199 (428)
                      .+.-+.+. +....|..++.  +..|.+.+|.++.++. .+..+..++.+.+..+++ .+.-..+...          ..
T Consensus       146 llNan~i~Cir~~al~dL~~--l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPS--LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             hcChhhhcchhHHHHHHhhh--cchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            77655442 23334444443  6666666766666655 455555666666665552 2111111100          00


Q ss_pred             CCCCEEEecCCccCCcccCCCCCCCccEE---ecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCE
Q 042919          200 TKLDTLYLLNNSLSGNFQLPSSKHDLLRL---DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES  276 (428)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  276 (428)
                      .......+.+.++... ..-....+++.+   -.+.+......|..-+..+++|++|++++|.++++.+.+|.....++.
T Consensus       224 rc~~p~rl~~~Ri~q~-~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQE-DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             eecchHHHHHHHhccc-chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence            0000000000000000 000011112222   223343444556666677899999999999999888889999999999


Q ss_pred             EECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCcc
Q 042919          277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHF  331 (428)
Q Consensus       277 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~  331 (428)
                      |.+..|++. .+...+|.++..|++|++++|+|+...+  |.....|.+|.+-.|++
T Consensus       303 L~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  303 LYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            999999887 6777888899999999999999886554  77788888888866654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.76  E-value=1.4e-17  Score=162.04  Aligned_cols=263  Identities=23%  Similarity=0.266  Sum_probs=153.4

Q ss_pred             CCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEE
Q 042919           78 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKAL  157 (428)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  157 (428)
                      .+-..|+++++.++ .+|..+.  ++|+.|++.+|+++.+..     .+++|++|++++|.+...+..    + .+|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~LtsLP~l----p-~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPVL----P-PGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccCcccCc----c-ccccee
Confidence            34566777777666 3454443  367777777777665411     246677777776665433321    1 247777


Q ss_pred             EcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCcccc
Q 042919          158 NLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSC  237 (428)
Q Consensus       158 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  237 (428)
                      ++.+|.+..+|...   .+|+.|++++|.+.. ++.    ..++|+.|++++|.+.....   ...+|+.|++++|.+. 
T Consensus       268 ~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~----~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~-  335 (788)
T PRK15387        268 SIFSNPLTHLPALP---SGLCKLWIFGNQLTS-LPV----LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT-  335 (788)
T ss_pred             eccCCchhhhhhch---hhcCEEECcCCcccc-ccc----cccccceeECCCCccccCCC---CcccccccccccCccc-
Confidence            77777766666422   356777777776663 222    23567777777776665332   2235666677776665 


Q ss_pred             CCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCC
Q 042919          238 QLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN  317 (428)
Q Consensus       238 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  317 (428)
                      .+|.    .+.+|+.|++++|.+.. +|..   .++|+.|++++|.+. .++..    ..+|+.|++++|.+......  
T Consensus       336 ~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~LP~l--  400 (788)
T PRK15387        336 SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTSLPVL--  400 (788)
T ss_pred             cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccCCCCc--
Confidence            3332    13467777777776663 3321   245666677777665 34431    34567777777766643322  


Q ss_pred             CCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCC
Q 042919          318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPS  385 (428)
Q Consensus       318 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  385 (428)
                      .++|+.|++++|.+... +..   +.+|+.|++++|+++ .+|..+.+++.|+.|+|++|++++..+.
T Consensus       401 ~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        401 PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            34667777777766532 221   235666777777776 5666666677777777777776654443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.75  E-value=1.1e-20  Score=162.75  Aligned_cols=376  Identities=19%  Similarity=0.174  Sum_probs=217.5

Q ss_pred             CCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccC-CccCcchhhhhccCCCCcEEeCCCCccCC
Q 042919           38 NGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSS-NQLTGNLQSVIANIKSLEYLSLDDNNFEG  116 (428)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  116 (428)
                      +...++.+.+.+|+.+++||.|+|++|.|+.+.|.+|..+++|.+|.+-+ ++|+.....+|.++..++.|.+.-|++.-
T Consensus        75 dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C  154 (498)
T KOG4237|consen   75 DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC  154 (498)
T ss_pred             ccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc
Confidence            33446677789999999999999999999999999999999999988777 78986666789999999999998888765


Q ss_pred             ccccccccCCCCCcEEEccCCcccccc-CCCCCCCcCCccEEEcCCCC------Ccc-------chhHhhhCCCccEEEc
Q 042919          117 LFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCS------LQA-------LPSILLQQLDLRFIDL  182 (428)
Q Consensus       117 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~------~~~-------l~~~~~~~~~L~~L~l  182 (428)
                      + ....+..+++|..|.+.++.+.... ..|.....  ++++.+..+.      +..       .+.++.......-..+
T Consensus       155 i-r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~--i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl  231 (498)
T KOG4237|consen  155 I-RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA--IKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL  231 (498)
T ss_pred             h-hHHHHHHhhhcchhcccchhhhhhccccccchhc--cchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence            5 3367888999999998888774433 35555443  6666655543      111       1111111111222222


Q ss_pred             cCCcCCCCCchhhhhcCCCCCEEEecCCccCCc--ccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCC
Q 042919          183 SHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN--FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGF  260 (428)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  260 (428)
                      ...++..+....+......+..=..+.|.....  ..-...+++|+++++++|.++ .+....+.+..+++.|++..|.+
T Consensus       232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l  310 (498)
T KOG4237|consen  232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKL  310 (498)
T ss_pred             HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchH
Confidence            222332222222221111111001111111000  011235666666666666666 33333334466677777777666


Q ss_pred             CCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccc------------------cccCCCCCcc
Q 042919          261 EGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE------------------VVFPNSTNLC  322 (428)
Q Consensus       261 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------------~~~~~~~~L~  322 (428)
                      .......|.++..|++|++.+|+++ .+...+|.....|.+|.+-.|.+...                  ..-.....++
T Consensus       311 ~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~  389 (498)
T KOG4237|consen  311 EFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVR  389 (498)
T ss_pred             HHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhc
Confidence            6555555666666777777777666 34444455666666666655443311                  1122233455


Q ss_pred             eeecccCccCcc---chh---------hhhcCCCCcEE-EccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcccc
Q 042919          323 WLYLNNNHFSGK---IQD---------GLSKATSLLEL-DLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNL  389 (428)
Q Consensus       323 ~L~l~~~~~~~~---~~~---------~l~~~~~L~~L-~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~  389 (428)
                      .+.++...+.+.   .++         .-..++.+.++ ..++..++ .+|..+.  ..-..|.+.+|.++....+  .+
T Consensus       390 ~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~~vp~~--~~  464 (498)
T KOG4237|consen  390 QIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAITSVPDE--LL  464 (498)
T ss_pred             cccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhcccCHH--HH
Confidence            555554433211   111         11122333333 22222333 4444332  2456678888888744444  45


Q ss_pred             ccCceEEccCCcCCccCCcccccCCCCCEEECCCC
Q 042919          390 SSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN  424 (428)
Q Consensus       390 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  424 (428)
                      .+| .+++++|++..-.-..|.++.+|.+|.++.|
T Consensus       465 ~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  465 RSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            677 8899999988555667888888888888765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=4.1e-17  Score=159.77  Aligned_cols=246  Identities=22%  Similarity=0.326  Sum_probs=156.0

Q ss_pred             CccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCC
Q 042919          153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISH  232 (428)
Q Consensus       153 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  232 (428)
                      +...|+++++++..+|..+.  +.|+.|++++|.++ .++..+   ..+|+.|++++|.+...+..  ...+|+.|++++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~LtsLP~~--l~~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENL---QGNIKTLYANSNQLTSIPAT--LPDTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCccccCChh--hhccccEEECcC
Confidence            35566666666666665432  36777777777666 344333   24677777777766543321  124677777777


Q ss_pred             CccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccc
Q 042919          233 NKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE  312 (428)
Q Consensus       233 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  312 (428)
                      |.+. .+|..+   ..+|+.|++++|.+. ..|..+.  ++|++|++++|.+. .++...   ..+|+.|++++|.+...
T Consensus       251 N~L~-~LP~~l---~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        251 NRIT-ELPERL---PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             CccC-cCChhH---hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccccC
Confidence            7776 555544   346778888777776 3444432  46788888887766 444322   24677777777776643


Q ss_pred             cccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccC
Q 042919          313 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSL  392 (428)
Q Consensus       313 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L  392 (428)
                      .. ...++|+.|++++|.++. .+..+  .++|+.|++++|.++ .+|..+.  +.|+.|+|++|+++.. |..+ ..+|
T Consensus       320 P~-~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L-P~~l-~~sL  390 (754)
T PRK15370        320 PE-TLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL-PENL-PAAL  390 (754)
T ss_pred             Cc-cccccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC-CHhH-HHHH
Confidence            22 223678888888887764 33333  367888888888877 4555442  5788888888887743 3332 2468


Q ss_pred             ceEEccCCcCCccCCcc----cccCCCCCEEECCCCccC
Q 042919          393 RRLYMHMNAFNGSIPGA----LRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       393 ~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~  427 (428)
                      +.|++++|++. .+|..    +..++.+..|++.+||++
T Consensus       391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            88888888887 55543    344577888888888875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=3.9e-18  Score=155.03  Aligned_cols=269  Identities=25%  Similarity=0.268  Sum_probs=181.8

Q ss_pred             EEcCCCCC--ccchhHhhhCCCccEEEccCCcCCCCCchh---hhhcCCCCCEEEecCCccCC-------cccCCCCCCC
Q 042919          157 LNLRNCSL--QALPSILLQQLDLRFIDLSHNKLQGIFPSW---LLQNNTKLDTLYLLNNSLSG-------NFQLPSSKHD  224 (428)
Q Consensus       157 L~l~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~  224 (428)
                      |++..+.+  ......+..+++|+.++++++.+++.....   .....+.++.+.++++....       .......+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            45555554  455666777788999999999886543222   23456779999998887652       0112335779


Q ss_pred             ccEEecCCCccccCCCchhhhcCCC---CcEEEccCCCCCCC----CCccccCC-CCCCEEECcCcccCCCCc---hhhh
Q 042919          225 LLRLDISHNKFSCQLPGNMGKILPE---LLSLNLSENGFEGR----IPSSMSEM-KRLESLDLSSNNFSGELP---RQFL  293 (428)
Q Consensus       225 L~~L~l~~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~----~~~~l~~~-~~L~~L~l~~~~~~~~~~---~~~~  293 (428)
                      |+.|+++++.+....+..+.. +..   |+.|++++|.+.+.    ....+..+ ++|++|++++|.+.+...   ...+
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLES-LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHH-HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            999999998886444444433 333   99999999887632    22345566 889999999998764322   2234


Q ss_pred             cCCCCCCEEeCCCcccccccc------cCCCCCcceeecccCccCccc----hhhhhcCCCCcEEEccCCcccccCCccc
Q 042919          294 SGCFSLSFLSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKI----QDGLSKATSLLELDLSNNMLYGQIPPWF  363 (428)
Q Consensus       294 ~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~  363 (428)
                      ..++.|++|++.+|.+.+...      +..+++|++|++++|.+++..    ...+..+++|++|++++|.+++.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            566789999999988774321      445678999999998876443    3345667889999999988875322222


Q ss_pred             C-----CCCCCcEEeCCCCcCCcCCCCc----c-ccccCceEEccCCcCCcc----CCcccccC-CCCCEEECCCCcc
Q 042919          364 G-----NLSGLQFLDISENQLCGSVPSS----F-NLSSLRRLYMHMNAFNGS----IPGALRRS-LSLTVLDLRDNEF  426 (428)
Q Consensus       364 ~-----~~~~L~~L~L~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~  426 (428)
                      .     ..+.|+.|++++|.+++.....    + .+++|+.+++++|.+...    ....+... +.|+.+++.++|+
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            1     2478999999999887432222    2 457899999999998744    33344444 6899999988875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.2e-17  Score=151.83  Aligned_cols=279  Identities=24%  Similarity=0.252  Sum_probs=138.0

Q ss_pred             EeccCCcCC-CCchHhhhcCCCCCEEEccCCccCc----chhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919           59 LDLSKNNLY-GHLSPCLSNLTHIKVLDLSSNQLTG----NLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK  133 (428)
Q Consensus        59 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  133 (428)
                      |+|.++.+. ......+..+++|+.|+++++.++.    ..+..+...+++++++++++.+... +              
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~--------------   67 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-P--------------   67 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-c--------------
Confidence            455555554 3344455666667777777776642    1333444556666666666543310 0              


Q ss_pred             ccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcC---CCCCEEEecCC
Q 042919          134 LSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNN---TKLDTLYLLNN  210 (428)
Q Consensus       134 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~  210 (428)
                                                  .....++..+..+++|+.|++++|.+....+..+ ..+   ++|+.|++++|
T Consensus        68 ----------------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~  118 (319)
T cd00116          68 ----------------------------RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNN  118 (319)
T ss_pred             ----------------------------hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCC
Confidence                                        0012234445555566666666666543332222 112   22555555554


Q ss_pred             ccCCc-----ccCCCCC-CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCccc
Q 042919          211 SLSGN-----FQLPSSK-HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF  284 (428)
Q Consensus       211 ~~~~~-----~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  284 (428)
                      .+...     ......+ ++|++|++++|.+++.....                     ....+..+++|++|++++|.+
T Consensus       119 ~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~---------------------~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116         119 GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA---------------------LAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH---------------------HHHHHHhCCCcCEEECcCCCC
Confidence            43310     0011122 44555555555443211111                     122233444555555555544


Q ss_pred             CCCCchh---hhcCCCCCCEEeCCCccccccc------ccCCCCCcceeecccCccCccchhhhhc-----CCCCcEEEc
Q 042919          285 SGELPRQ---FLSGCFSLSFLSLSDNHLQGEV------VFPNSTNLCWLYLNNNHFSGKIQDGLSK-----ATSLLELDL  350 (428)
Q Consensus       285 ~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l  350 (428)
                      .+.....   .+...+.|+.|++++|.+.+..      .+..+++|++|++++|.+++.....+..     .+.|++|++
T Consensus       178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l  257 (319)
T cd00116         178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL  257 (319)
T ss_pred             chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence            4211111   1223345555555555544221      1445667777777777666433322221     367777887


Q ss_pred             cCCcccc----cCCcccCCCCCCcEEeCCCCcCCcCCCCcc-----cc-ccCceEEccCCcC
Q 042919          351 SNNMLYG----QIPPWFGNLSGLQFLDISENQLCGSVPSSF-----NL-SSLRRLYMHMNAF  402 (428)
Q Consensus       351 ~~~~i~~----~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~-~~L~~L~l~~~~~  402 (428)
                      ++|.+++    .+...+..+++|+.+++++|++++.....+     .. +.|+++++.++++
T Consensus       258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            7777752    233445556778888888887775533222     23 5777777777653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=3.3e-16  Score=153.42  Aligned_cols=246  Identities=20%  Similarity=0.279  Sum_probs=120.9

Q ss_pred             CCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEc
Q 042919          103 SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDL  182 (428)
Q Consensus       103 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l  182 (428)
                      +...|++++++++.+  +..+  .+.|+.|++++|.+...+..+.    .+|++|++++|.+..+|..+.  ++|+.|++
T Consensus       179 ~~~~L~L~~~~LtsL--P~~I--p~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTTI--PACI--PEQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLTSIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCcC--Cccc--ccCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence            456677777666654  1122  2456666776665543333221    246667776666666665443  25666666


Q ss_pred             cCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCC
Q 042919          183 SHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEG  262 (428)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  262 (428)
                      ++|.+. .++..+   .++|+.|++++|.+...+...  .++|+.|++++|.+. .++..+   .++|+.|++++|.+..
T Consensus       249 s~N~L~-~LP~~l---~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        249 SINRIT-ELPERL---PSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTA  318 (754)
T ss_pred             cCCccC-cCChhH---hCCCCEEECcCCccCcccccc--CCCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcccc
Confidence            666665 334333   235666666666555432211  235666666666555 333322   2345566666665552


Q ss_pred             CCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcC
Q 042919          263 RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA  342 (428)
Q Consensus       263 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  342 (428)
                       .|..+  .++|++|++++|.+. .++...   +++|+.|++++|.+..... .-.++|+.|++++|.++.. +..+.  
T Consensus       319 -LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~Lt~L-P~~l~--  387 (754)
T PRK15370        319 -LPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITVLPE-TLPPTITTLDVSRNALTNL-PENLP--  387 (754)
T ss_pred             -CCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCcCCh-hhcCCcCEEECCCCcCCCC-CHhHH--
Confidence             22222  245566666666554 343322   2455555555555442211 1124555555555555432 22221  


Q ss_pred             CCCcEEEccCCcccccCCccc----CCCCCCcEEeCCCCcCC
Q 042919          343 TSLLELDLSNNMLYGQIPPWF----GNLSGLQFLDISENQLC  380 (428)
Q Consensus       343 ~~L~~L~l~~~~i~~~~~~~~----~~~~~L~~L~L~~~~~~  380 (428)
                      .+|+.|++++|++. .+|..+    ..++.+..|++.+|+++
T Consensus       388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            23555555555554 333222    22344555555555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.46  E-value=7.3e-16  Score=118.14  Aligned_cols=177  Identities=32%  Similarity=0.468  Sum_probs=136.9

Q ss_pred             CCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCC
Q 042919          220 SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSL  299 (428)
Q Consensus       220 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  299 (428)
                      ..+.++..|.++.+.++ .++..++. +.+|+.|++.+|++. ..|..++.+++|+.|+++.|++. ..|.. |+.++.|
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg-fgs~p~l  104 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG-FGSFPAL  104 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc-cCCCchh
Confidence            34556777888888887 66777776 788999999999987 57888899999999999988876 55554 6788999


Q ss_pred             CEEeCCCcccccccc---cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCC
Q 042919          300 SFLSLSDNHLQGEVV---FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISE  376 (428)
Q Consensus       300 ~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~  376 (428)
                      +.|++++|++.+...   +..+..|+.|++++|.+. ..+...+++++|+.|.+..|.+- .+|..++.+..|+.|++.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            999999888775443   677788999999999887 56667789999999999999887 7888999999999999999


Q ss_pred             CcCCcCCCCccc---cccCceEEccCCcCC
Q 042919          377 NQLCGSVPSSFN---LSSLRRLYMHMNAFN  403 (428)
Q Consensus       377 ~~~~~~~~~~~~---~~~L~~L~l~~~~~~  403 (428)
                      |.++-.+|+...   ..+=..+.+..|+..
T Consensus       183 nrl~vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  183 NRLTVLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             ceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            998855554431   122233444555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.37  E-value=1.1e-14  Score=111.78  Aligned_cols=159  Identities=26%  Similarity=0.395  Sum_probs=119.1

Q ss_pred             cccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCC
Q 042919           49 GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSK  128 (428)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  128 (428)
                      .+.++.+.+.|.+++++++ ..|..++.+.+|+.|++.+++++ ..|..+..++.|+.|++.-|++...  +..++.+|.
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~l--prgfgs~p~  103 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNIL--PRGFGSFPA  103 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcC--ccccCCCch
Confidence            3556778888889988888 55667888889999999988887 6777888888899988887776544  567888888


Q ss_pred             CcEEEccCCccc--cccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEE
Q 042919          129 LQVFKLSNSLVK--IETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLY  206 (428)
Q Consensus       129 L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  206 (428)
                      |+.|++.++...  ..++.|.....  |+.|++++|.++-+|...+.+++|+.|.+.+|.+. ..|..+ +.++.|++|.
T Consensus       104 levldltynnl~e~~lpgnff~m~t--lralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lrelh  179 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTT--LRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLRELH  179 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHH--HHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHHHHh
Confidence            888888877663  23444444443  78888888888888888888888888888888766 455554 4567777777


Q ss_pred             ecCCccCCc
Q 042919          207 LLNNSLSGN  215 (428)
Q Consensus       207 l~~~~~~~~  215 (428)
                      +.+++++..
T Consensus       180 iqgnrl~vl  188 (264)
T KOG0617|consen  180 IQGNRLTVL  188 (264)
T ss_pred             cccceeeec
Confidence            777766543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.36  E-value=1.3e-13  Score=117.78  Aligned_cols=183  Identities=20%  Similarity=0.218  Sum_probs=107.2

Q ss_pred             CCCCCccEEecCCCccccCCCchh---hhcCCCCcEEEccCCCCCCCCC-------------ccccCCCCCCEEECcCcc
Q 042919          220 SSKHDLLRLDISHNKFSCQLPGNM---GKILPELLSLNLSENGFEGRIP-------------SSMSEMKRLESLDLSSNN  283 (428)
Q Consensus       220 ~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~  283 (428)
                      ..++.|+++++++|.+....+..+   .+.+..|+.|++.+|.+....-             ......+.|+++.+.+|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            355577777777777654444332   2336778888888887763221             223456778888888888


Q ss_pred             cCCCC---chhhhcCCCCCCEEeCCCcccccccc------cCCCCCcceeecccCccCccc----hhhhhcCCCCcEEEc
Q 042919          284 FSGEL---PRQFLSGCFSLSFLSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKI----QDGLSKATSLLELDL  350 (428)
Q Consensus       284 ~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l  350 (428)
                      +....   ....+...+.|+.+.+..|.|.....      +..|++|+.|++++|.++...    ...++.+++|+.+++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            76321   12344556788888887777765433      566777777777777665432    234455566666666


Q ss_pred             cCCcccccCCccc-----CCCCCCcEEeCCCCcCCcCCCCcc-----ccccCceEEccCCcC
Q 042919          351 SNNMLYGQIPPWF-----GNLSGLQFLDISENQLCGSVPSSF-----NLSSLRRLYMHMNAF  402 (428)
Q Consensus       351 ~~~~i~~~~~~~~-----~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~  402 (428)
                      ++|.+.......+     ...|.|+.|.+.+|.++......+     ..+.|+.|++++|.+
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            6665543322222     124566666666666554322222     345666666666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=5.4e-13  Score=117.28  Aligned_cols=162  Identities=26%  Similarity=0.234  Sum_probs=89.1

Q ss_pred             hhhcCCCCcEEEccCCCCCCCCCcc-ccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc--ccccCCCC
Q 042919          243 MGKILPELLSLNLSENGFEGRIPSS-MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNST  319 (428)
Q Consensus       243 ~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~  319 (428)
                      +++.+|+|+.|+++.|.+....... -..+++|+.|.++.|.++..-.......+|+|+.|++..|....  ......+.
T Consensus       167 i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~  246 (505)
T KOG3207|consen  167 IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ  246 (505)
T ss_pred             HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh
Confidence            3444555555555555543211111 11345566666666665533334444556666666666663221  12244556


Q ss_pred             CcceeecccCccCccc-hhhhhcCCCCcEEEccCCccccc-CCcc-----cCCCCCCcEEeCCCCcCCcCCCCcc--ccc
Q 042919          320 NLCWLYLNNNHFSGKI-QDGLSKATSLLELDLSNNMLYGQ-IPPW-----FGNLSGLQFLDISENQLCGSVPSSF--NLS  390 (428)
Q Consensus       320 ~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~-~~~~-----~~~~~~L~~L~L~~~~~~~~~~~~~--~~~  390 (428)
                      .|++|+|++|++.+.. ......++.|+.|.++.+++.+. .|++     ...+++|++|++..|++.+...-.-  .++
T Consensus       247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~  326 (505)
T KOG3207|consen  247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE  326 (505)
T ss_pred             HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccc
Confidence            6777777776655332 23345667777777777766533 2332     2345777777777777754433222  567


Q ss_pred             cCceEEccCCcCCc
Q 042919          391 SLRRLYMHMNAFNG  404 (428)
Q Consensus       391 ~L~~L~l~~~~~~~  404 (428)
                      +|+.|.+.+|++..
T Consensus       327 nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  327 NLKHLRITLNYLNK  340 (505)
T ss_pred             hhhhhhcccccccc
Confidence            77777777777753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=6.9e-13  Score=116.63  Aligned_cols=207  Identities=25%  Similarity=0.229  Sum_probs=146.1

Q ss_pred             CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCC--CCCccccCCCCCCEEECcCcccCCCCchhhhcCCCC
Q 042919          221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEG--RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS  298 (428)
Q Consensus       221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  298 (428)
                      .+..|+++.+.++.+.........+.|++++.|+++.|-+..  .+-.....+|+|+.|+++.|++........-..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            445566666666665433333455668999999999986652  233445689999999999998763333322335789


Q ss_pred             CCEEeCCCcccccccc---cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccccc-CCcccCCCCCCcEEeC
Q 042919          299 LSFLSLSDNHLQGEVV---FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPPWFGNLSGLQFLDI  374 (428)
Q Consensus       299 L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~L  374 (428)
                      |+.|.++.|.++-...   ...+|+|+.|++..|............+..|++|+|++|.+-+. .-...+.+|.|..|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            9999999999883222   67899999999999853323333344567899999999987533 2245778899999999


Q ss_pred             CCCcCCcCCC-Cc------cccccCceEEccCCcCCcc-CCcccccCCCCCEEECCCCccC
Q 042919          375 SENQLCGSVP-SS------FNLSSLRRLYMHMNAFNGS-IPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       375 ~~~~~~~~~~-~~------~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      +.|.+..... ..      ..+++|+.|++..|+|.+. .-..+..+++|+.|.+.+|+++
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            9998765222 22      1589999999999999632 2345667888899888888764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.26  E-value=1.8e-12  Score=110.91  Aligned_cols=183  Identities=23%  Similarity=0.251  Sum_probs=117.2

Q ss_pred             cCCCCCEEEecCCccCC-----cccCCCCCCCccEEecCCCccccCCCchh------------hhcCCCCcEEEccCCCC
Q 042919          198 NNTKLDTLYLLNNSLSG-----NFQLPSSKHDLLRLDISHNKFSCQLPGNM------------GKILPELLSLNLSENGF  260 (428)
Q Consensus       198 ~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------~~~~~~L~~L~l~~~~~  260 (428)
                      .+++|+++++|+|.+..     .-+...++..|+.|.+.+|.+....-..+            ....+.|+++...+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            34456666666655432     11223345566666666665432111111            11256788888888877


Q ss_pred             CCC----CCccccCCCCCCEEECcCcccCCCCc---hhhhcCCCCCCEEeCCCcccccccc------cCCCCCcceeecc
Q 042919          261 EGR----IPSSMSEMKRLESLDLSSNNFSGELP---RQFLSGCFSLSFLSLSDNHLQGEVV------FPNSTNLCWLYLN  327 (428)
Q Consensus       261 ~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~  327 (428)
                      .+.    .-..++..+.|+.+.+..|.+.....   ...+..++.|+.|++.+|.++....      ++..++|++++++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            532    22345667888888888887653322   3346678888888888888775443      6777889999999


Q ss_pred             cCccCccchhhh-----hcCCCCcEEEccCCccccc----CCcccCCCCCCcEEeCCCCcCC
Q 042919          328 NNHFSGKIQDGL-----SKATSLLELDLSNNMLYGQ----IPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       328 ~~~~~~~~~~~l-----~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      +|.+......++     ...|+|+.+.+.+|.|+..    +..++...|.|++|+|++|.+.
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            998876554443     2468899999999988632    2334556789999999999883

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=7.4e-12  Score=100.38  Aligned_cols=126  Identities=26%  Similarity=0.256  Sum_probs=35.2

Q ss_pred             CCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEE
Q 042919          270 EMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELD  349 (428)
Q Consensus       270 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  349 (428)
                      +..++++|++.+|.+. .+.. .-..+.+|+.|++++|.+.....+..++.|++|++++|.++.........+++|++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             --------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccc-cccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            3445666666666665 2321 1113556666666666666655566666666666666666543222223456666666


Q ss_pred             ccCCccccc-CCcccCCCCCCcEEeCCCCcCCcCCCCcc-----ccccCceEEcc
Q 042919          350 LSNNMLYGQ-IPPWFGNLSGLQFLDISENQLCGSVPSSF-----NLSSLRRLYMH  398 (428)
Q Consensus       350 l~~~~i~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~L~~L~l~  398 (428)
                      +++|+|.+. .-..++.+|+|+.|++.+|+++.. ....     .+|+|+.||-.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            666665432 123445556666666666665533 1111     45555555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=4.6e-12  Score=106.32  Aligned_cols=127  Identities=24%  Similarity=0.280  Sum_probs=66.7

Q ss_pred             CCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCC
Q 042919          298 SLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISE  376 (428)
Q Consensus       298 ~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~  376 (428)
                      .|+++++++|.|..... ..-.|.++.|+++.|.+...  ..++.+++|+.|++++|.++ ....+-..+-+.++|.|++
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence            44445555555443322 33445555555555555422  22455566666666666555 3344444555666666666


Q ss_pred             CcCCcCCCCccccccCceEEccCCcCCccC-CcccccCCCCCEEECCCCccCC
Q 042919          377 NQLCGSVPSSFNLSSLRRLYMHMNAFNGSI-PGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      |.+. .......+-+|+.|++++|+|.... -..++++|-|+.+.+.+||+.|
T Consensus       362 N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  362 NKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            6554 2222224556666666666665322 2345666666666666666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=3.3e-11  Score=96.68  Aligned_cols=124  Identities=29%  Similarity=0.263  Sum_probs=40.9

Q ss_pred             CCCCCCEEeCCCcccccccccC-CCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCccc-CCCCCCcEE
Q 042919          295 GCFSLSFLSLSDNHLQGEVVFP-NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWF-GNLSGLQFL  372 (428)
Q Consensus       295 ~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L  372 (428)
                      ++..+++|++.++.|.....+. .+.+|+.|++++|.+...  +.+..++.|+.|++++|.|+ .+...+ ..+|+|+.|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            4456677777777777665555 466777777777777643  34566777777777777776 333333 356777777


Q ss_pred             eCCCCcCCcCCCC-cc-ccccCceEEccCCcCCccCC---cccccCCCCCEEEC
Q 042919          373 DISENQLCGSVPS-SF-NLSSLRRLYMHMNAFNGSIP---GALRRSLSLTVLDL  421 (428)
Q Consensus       373 ~L~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l  421 (428)
                      ++++|++.+...- .+ .+++|+.|++.+|++...--   ..+..+|+|+.||-
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            7777776643332 22 67777777777777763211   23566777777763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=3.1e-12  Score=107.15  Aligned_cols=261  Identities=20%  Similarity=0.159  Sum_probs=132.5

Q ss_pred             ccChHHHHHHhccc-ceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCC--CCCEEEcc
Q 042919           10 KKPQELWHKFFQKG-SITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLT--HIKVLDLS   86 (428)
Q Consensus        10 ~~~~~~~~~~~~~~-~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~   86 (428)
                      ..|+|+...+|+.- .-+.+.+.+.|..|+...-         .=..-+.+++.+-++.   |..+..+.  ....+.+.
T Consensus       100 slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~---------de~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rla  167 (419)
T KOG2120|consen  100 SLPDEILLGIFSCLCKKELLKVSGVCKRFYRLAS---------DESLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLA  167 (419)
T ss_pred             cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccc---------cccceeeeccCCCccC---hhHHHHHHhCCeEEEEcc
Confidence            35888766666543 4445888899999988762         2245667787766554   33333322  23333333


Q ss_pred             CCccCcc-hhhhhc-cCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCC
Q 042919           87 SNQLTGN-LQSVIA-NIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL  164 (428)
Q Consensus        87 ~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  164 (428)
                      ...+... ....+. .=..|+++|++...++...-...++.|.+|+.|.+.+                         .++
T Consensus       168 r~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-------------------------~~L  222 (419)
T KOG2120|consen  168 RSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-------------------------LRL  222 (419)
T ss_pred             hhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-------------------------ccc
Confidence            2211110 111111 1124677777766555332233444555544444333                         222


Q ss_pred             -ccchhHhhhCCCccEEEccCCc-CCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCch
Q 042919          165 -QALPSILLQQLDLRFIDLSHNK-LQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGN  242 (428)
Q Consensus       165 -~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  242 (428)
                       ..+...+..-.+|+.|+++++. ++......++++|+.|..|++++|.....                      .+...
T Consensus       223 dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~----------------------~Vtv~  280 (419)
T KOG2120|consen  223 DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE----------------------KVTVA  280 (419)
T ss_pred             CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch----------------------hhhHH
Confidence             2344455555667777777664 44444455566666666666666654321                      11111


Q ss_pred             hhhcCCCCcEEEccCCCCC--CC-CCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc---ccC
Q 042919          243 MGKILPELLSLNLSENGFE--GR-IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFP  316 (428)
Q Consensus       243 ~~~~~~~L~~L~l~~~~~~--~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~  316 (428)
                      +...-+.|..|+++++.-.  .. ...-...+|.|.+|+++.|..........+..++.|++|.++.|.-....   .+.
T Consensus       281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~  360 (419)
T KOG2120|consen  281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELN  360 (419)
T ss_pred             HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeec
Confidence            1222244555555554211  00 11112356666666666665443333344445666666666666533222   256


Q ss_pred             CCCCcceeecccC
Q 042919          317 NSTNLCWLYLNNN  329 (428)
Q Consensus       317 ~~~~L~~L~l~~~  329 (428)
                      ..|+|.+|++.+|
T Consensus       361 s~psl~yLdv~g~  373 (419)
T KOG2120|consen  361 SKPSLVYLDVFGC  373 (419)
T ss_pred             cCcceEEEEeccc
Confidence            6777777777766

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.12  E-value=1.2e-12  Score=114.52  Aligned_cols=296  Identities=18%  Similarity=0.127  Sum_probs=134.1

Q ss_pred             CCCEEEccCCccCc--chhhhhccCCCCcEEeCCCCccCCc-cccccccCCCCCcEEEccCCccccccCCCCCCCcCCcc
Q 042919           79 HIKVLDLSSNQLTG--NLQSVIANIKSLEYLSLDDNNFEGL-FSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLK  155 (428)
Q Consensus        79 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  155 (428)
                      .|+.|.+++++-..  ..-..-.++++++.|.+.+|...+. .-...-..|++|+++++..|..              ++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~--------------iT  204 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS--------------IT  204 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch--------------hH
Confidence            46666676664331  1222335566777776666643222 1112223455555555443211              00


Q ss_pred             EEEcCCCCCccchhHhhhCCCccEEEccCCc-CCCCCchhhhhcCCCCCEEEecCCccCCccc---CCCCCCCccEEecC
Q 042919          156 ALNLRNCSLQALPSILLQQLDLRFIDLSHNK-LQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ---LPSSKHDLLRLDIS  231 (428)
Q Consensus       156 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~  231 (428)
                      .        ..+......+++|+.+++++|+ +.+.....+.+++..++.+...+|.-.....   ....++.+.++++.
T Consensus       205 ~--------~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~  276 (483)
T KOG4341|consen  205 D--------VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQ  276 (483)
T ss_pred             H--------HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchh
Confidence            0        0111223445555555555554 3333333444455555555444443222111   11233334444444


Q ss_pred             CCcc-ccCCCchhhhcCCCCcEEEccCCC-CCCCCCcc-ccCCCCCCEEECcCcccCCCCchhhh-cCCCCCCEEeCCCc
Q 042919          232 HNKF-SCQLPGNMGKILPELLSLNLSENG-FEGRIPSS-MSEMKRLESLDLSSNNFSGELPRQFL-SGCFSLSFLSLSDN  307 (428)
Q Consensus       232 ~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~  307 (428)
                      .|.. ++.....+..++..|+.+..+++. +++..... ..++.+|+.+.+..|+--++.....+ .+++.|+.+++.++
T Consensus       277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~  356 (483)
T KOG4341|consen  277 HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC  356 (483)
T ss_pred             hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence            4432 222223344445666666666653 22222222 23556666666666653222222222 34556666666555


Q ss_pred             ccccccc----cCCCCCcceeecccCcc-Cccchhhh----hcCCCCcEEEccCCcc-cccCCcccCCCCCCcEEeCCCC
Q 042919          308 HLQGEVV----FPNSTNLCWLYLNNNHF-SGKIQDGL----SKATSLLELDLSNNML-YGQIPPWFGNLSGLQFLDISEN  377 (428)
Q Consensus       308 ~~~~~~~----~~~~~~L~~L~l~~~~~-~~~~~~~l----~~~~~L~~L~l~~~~i-~~~~~~~~~~~~~L~~L~L~~~  377 (428)
                      .......    -.+++.|+.++++.|.. +++....+    .....|..+.+.+++. ++.....+..++.|+.+++-+|
T Consensus       357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            4332221    34566677777766643 22211111    2345566666666643 3334445555666666666666


Q ss_pred             c-CCcCCCCcc--ccccCceEE
Q 042919          378 Q-LCGSVPSSF--NLSSLRRLY  396 (428)
Q Consensus       378 ~-~~~~~~~~~--~~~~L~~L~  396 (428)
                      . ++......+  .+|+++..-
T Consensus       437 q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  437 QDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hhhhhhhhHHHHhhCccceehh
Confidence            3 333333333  455554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=6.9e-11  Score=99.34  Aligned_cols=230  Identities=21%  Similarity=0.153  Sum_probs=143.4

Q ss_pred             cchhHhhhCCCccEEEccCCcC--C------CCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCcccc
Q 042919          166 ALPSILLQQLDLRFIDLSHNKL--Q------GIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSC  237 (428)
Q Consensus       166 ~l~~~~~~~~~L~~L~l~~~~~--~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  237 (428)
                      .+...+..+.+|+.|.+++..-  .      ...+.. +....+|+.+.++.|.-.........-|.|+.+......+. 
T Consensus       173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~-l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~-  250 (490)
T KOG1259|consen  173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFN-LNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ-  250 (490)
T ss_pred             chHHHHHhhhheeEEEecCCCCCCccccccccccccc-hHHhhhhheeeeeccchhheeceeecCchhheeeeeccccc-
Confidence            3444555566777777665421  1      111111 23456777888887776655555556677777777665543 


Q ss_pred             CCCchhhhcCCCCcEEEccCC-CCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccC
Q 042919          238 QLPGNMGKILPELLSLNLSEN-GFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFP  316 (428)
Q Consensus       238 ~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  316 (428)
                      ..+..+ + ...+....-..- -..+.....+...+.|+++++++|.+. .+++. ..-.|.++.|+++.|.+.....+.
T Consensus       251 ~~~~l~-p-e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~nLa  326 (490)
T KOG1259|consen  251 DVPSLL-P-ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQNLA  326 (490)
T ss_pred             cccccc-c-hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehhhh
Confidence            111111 0 111111111111 111222233444567888899988876 55544 345688899999999888777788


Q ss_pred             CCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc--ccccCce
Q 042919          317 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRR  394 (428)
Q Consensus       317 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~L~~  394 (428)
                      .+++|+.|++++|.++.. ...-..+-+++.|.+.+|.|.  ...++..+-+|..||+++|++........  .+|-|+.
T Consensus       327 ~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~  403 (490)
T KOG1259|consen  327 ELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET  403 (490)
T ss_pred             hcccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence            888999999998877632 222345678888999888874  23567778888999999998765333222  7888999


Q ss_pred             EEccCCcCCc
Q 042919          395 LYMHMNAFNG  404 (428)
Q Consensus       395 L~l~~~~~~~  404 (428)
                      +.+.+|++..
T Consensus       404 l~L~~NPl~~  413 (490)
T KOG1259|consen  404 LRLTGNPLAG  413 (490)
T ss_pred             HhhcCCCccc
Confidence            9999998874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=9.7e-12  Score=104.20  Aligned_cols=177  Identities=23%  Similarity=0.197  Sum_probs=112.9

Q ss_pred             CccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCccc-CCCCchhhhcCCCCCCEE
Q 042919          224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF-SGELPRQFLSGCFSLSFL  302 (428)
Q Consensus       224 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L  302 (428)
                      .++.+|++...++......+.+.|.+|+.|.+.+.++.+.+...++...+|+.+++++|.. ++......+..|..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4777777777765444455555578888888888888776667777778888888888753 323334456778888888


Q ss_pred             eCCCcccccccc----cCCCCCcceeecccCcc--Cccchhh-hhcCCCCcEEEccCCc-ccccCCcccCCCCCCcEEeC
Q 042919          303 SLSDNHLQGEVV----FPNSTNLCWLYLNNNHF--SGKIQDG-LSKATSLLELDLSNNM-LYGQIPPWFGNLSGLQFLDI  374 (428)
Q Consensus       303 ~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~--~~~~~~~-l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~L  374 (428)
                      ++++|.......    -.--++|+.|+++|+.-  .....+. ...+++|.+||+++|. ++...-..+-+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            888887665443    23346777788877742  1112222 3457777777777763 44333334556777777777


Q ss_pred             CCCcCCcCCCCcc----ccccCceEEccCCcC
Q 042919          375 SENQLCGSVPSSF----NLSSLRRLYMHMNAF  402 (428)
Q Consensus       375 ~~~~~~~~~~~~~----~~~~L~~L~l~~~~~  402 (428)
                      +.|...  +|+.+    ..|+|++|++.||--
T Consensus       346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  346 SRCYDI--IPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             hhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence            777642  22222    567777777777643

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.98  E-value=2.4e-11  Score=106.53  Aligned_cols=272  Identities=21%  Similarity=0.147  Sum_probs=149.4

Q ss_pred             ccEEEcCCCCC---ccchhHhhhCCCccEEEccCCc-CCCCCchhhhhcCCCCCEEEecCCccCC---cccCCCCCCCcc
Q 042919          154 LKALNLRNCSL---QALPSILLQQLDLRFIDLSHNK-LQGIFPSWLLQNNTKLDTLYLLNNSLSG---NFQLPSSKHDLL  226 (428)
Q Consensus       154 L~~L~l~~~~~---~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~  226 (428)
                      |+++.+.++.-   ..+-....++|+++.|.+.+|. +++.....+...|++++.+.+..|..-.   .......+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            77777777643   5556667788888888888775 5555555666778888888887754322   111334677888


Q ss_pred             EEecCCCc-cccCCCchhhhcCCCCcEEEccCCCCCC-C-CCccccCCCCCCEEECcCcccCCCCc-hhhhcCCCCCCEE
Q 042919          227 RLDISHNK-FSCQLPGNMGKILPELLSLNLSENGFEG-R-IPSSMSEMKRLESLDLSSNNFSGELP-RQFLSGCFSLSFL  302 (428)
Q Consensus       227 ~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L  302 (428)
                      ++++++|. +.+.....+.+++..++.+...+|.-.. . ....-..++.+.++++..|....+.. ..+-..+..|+.+
T Consensus       220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l  299 (483)
T KOG4341|consen  220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL  299 (483)
T ss_pred             HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence            88888776 3444444555566666666666653211 0 01111234445555555554222222 2222345666666


Q ss_pred             eCCCcccccccc----cCCCCCcceeecccCc-cCccchhhh-hcCCCCcEEEccCCccc-c-cCCcccCCCCCCcEEeC
Q 042919          303 SLSDNHLQGEVV----FPNSTNLCWLYLNNNH-FSGKIQDGL-SKATSLLELDLSNNMLY-G-QIPPWFGNLSGLQFLDI  374 (428)
Q Consensus       303 ~l~~~~~~~~~~----~~~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~i~-~-~~~~~~~~~~~L~~L~L  374 (428)
                      ..+++.-.....    ..++++|+.|.+.+|. +++.....+ .+++.|+.+++..+... + .+...-.+++.|+.+.+
T Consensus       300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl  379 (483)
T KOG4341|consen  300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL  379 (483)
T ss_pred             cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence            666654333222    3456677777776664 222222222 24566777766666432 1 12233345667777777


Q ss_pred             CCCcC-CcCCCCcc-----ccccCceEEccCCcCC-ccCCcccccCCCCCEEECCCCc
Q 042919          375 SENQL-CGSVPSSF-----NLSSLRRLYMHMNAFN-GSIPGALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       375 ~~~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~  425 (428)
                      +.|.. ++.....+     ....|+.+.+++|+.+ +..-+.+..|++|+.+++-+|.
T Consensus       380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            76643 32211111     3456666777777654 2233445566677777766663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.94  E-value=3e-09  Score=99.58  Aligned_cols=197  Identities=34%  Similarity=0.437  Sum_probs=118.4

Q ss_pred             EEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCC-CCcEEEccCCCCCCCCCccccCCCCCCEEECcCc
Q 042919          204 TLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILP-ELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN  282 (428)
Q Consensus       204 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (428)
                      .+....+..............++.+++.++.++ +++..... .. +|+.|+++++.+. ..+..+..++.|+.|+++.|
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            456666655443333444466777777777776 44444432 32 6777777777776 33345667777777777777


Q ss_pred             ccCCCCchhhhcCCCCCCEEeCCCccccccccc-CCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCc
Q 042919          283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVF-PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPP  361 (428)
Q Consensus       283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~  361 (428)
                      ++. +++... ...+.|+.+++++|.+...... .....|++|.+.+|... .....+.++..+..+.+.++++. ..+.
T Consensus       174 ~l~-~l~~~~-~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLS-DLPKLL-SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhh-hhhhhh-hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            766 444321 2466777777777777665553 34455777777766432 23344556666666666666665 3355


Q ss_pred             ccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCc
Q 042919          362 WFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPG  408 (428)
Q Consensus       362 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  408 (428)
                      .++.++.+++|++++|.++.... .....+++.|+++++.+....+.
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence            56666667777777777664444 22566777777777766644443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=1.2e-09  Score=109.64  Aligned_cols=82  Identities=20%  Similarity=0.204  Sum_probs=39.0

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCc--cCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ--LTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV  131 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  131 (428)
                      ...|...+.++.+. ..+.. ..++.|++|-+.++.  +.......|..++.|+.|++++|.-. ...|..++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhc
Confidence            44455555555443 11111 133456666666653  33233334556666666666654321 112345555555555


Q ss_pred             EEccCCc
Q 042919          132 FKLSNSL  138 (428)
Q Consensus       132 L~l~~~~  138 (428)
                      |+++++.
T Consensus       600 L~L~~t~  606 (889)
T KOG4658|consen  600 LDLSDTG  606 (889)
T ss_pred             ccccCCC
Confidence            4444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=8.6e-10  Score=72.72  Aligned_cols=60  Identities=35%  Similarity=0.499  Sum_probs=43.4

Q ss_pred             CCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCcc
Q 042919          367 SGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       367 ~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  426 (428)
                      |+|++|++++|+++...+..+ .+++|+.|++++|.+....+..|..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            467777777777776666666 677777777777777766667777777777777777765

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.90  E-value=3.9e-09  Score=98.82  Aligned_cols=197  Identities=32%  Similarity=0.408  Sum_probs=123.3

Q ss_pred             EEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCC-CccEEEccCCcCCCCCchhhhhcCCCCCEEEecC
Q 042919          131 VFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN  209 (428)
Q Consensus       131 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  209 (428)
                      .++...+............+  .++.+.+.++.+..++....... +|+.|+++++.+.... .. ...+++|+.|+++.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~--~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~-~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISELLELT--NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SP-LRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchhhhccc--ceeEEecCCcccccCccccccchhhcccccccccchhhhh-hh-hhccccccccccCC
Confidence            45666555433333333332  37888888888888887777774 8888888888877431 11 25677888888888


Q ss_pred             CccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCc
Q 042919          210 NSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELP  289 (428)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  289 (428)
                      |.+..........+.|+.|+++++.+. .++..... ..+|+++.+++|... ..+..+..++.+..+.+.++++. ..+
T Consensus       173 N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         173 NDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             chhhhhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence            877765444446677777777777776 55554322 445777777777433 34455666666666666666654 211


Q ss_pred             hhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccch
Q 042919          290 RQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ  336 (428)
Q Consensus       290 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  336 (428)
                       .....++.++.|++++|.+.....+....+++.|+++++.+....+
T Consensus       249 -~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         249 -ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             -chhccccccceeccccccccccccccccCccCEEeccCccccccch
Confidence             2244566677777777776666556666777777777666654433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.86  E-value=7.7e-11  Score=107.36  Aligned_cols=186  Identities=25%  Similarity=0.337  Sum_probs=97.0

Q ss_pred             EEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCccc
Q 042919          205 LYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF  284 (428)
Q Consensus       205 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  284 (428)
                      .+++.|++.........+..|+.+.+..|.+. .++..++. +..|..++++.|++. ..|..++.+| |+.|-+++|++
T Consensus        80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence            34444444433333334444444444444443 34444443 455555555555555 3444444444 55555555555


Q ss_pred             CCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCccc
Q 042919          285 SGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWF  363 (428)
Q Consensus       285 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  363 (428)
                      + .+|... +..+.|..|+.+.|.+..... +..+.+|+.|.+..|++.+ .++.+. .-.|..||++.|++. .+|..|
T Consensus       156 ~-~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~iPv~f  230 (722)
T KOG0532|consen  156 T-SLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YLPVDF  230 (722)
T ss_pred             c-cCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ecchhh
Confidence            4 444442 245555555666665554444 5556666666666666553 333333 334666666666666 666666


Q ss_pred             CCCCCCcEEeCCCCcCCcCCCCcc----ccccCceEEccCC
Q 042919          364 GNLSGLQFLDISENQLCGSVPSSF----NLSSLRRLYMHMN  400 (428)
Q Consensus       364 ~~~~~L~~L~L~~~~~~~~~~~~~----~~~~L~~L~l~~~  400 (428)
                      ..+.+|+.|-|.+|++. .++.++    ...--++|+...|
T Consensus       231 r~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  231 RKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            66666666666666665 444333    2334445555555

>PLN03150 hypothetical protein; Provisional

Probab=98.86  E-value=6.8e-09  Score=101.87  Aligned_cols=106  Identities=36%  Similarity=0.575  Sum_probs=88.6

Q ss_pred             CcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEcc
Q 042919          320 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMH  398 (428)
Q Consensus       320 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~  398 (428)
                      .++.|+|+++.+.+..+..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++..+..+ .+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37788888888887888888888899999999988888888888888899999999998888888777 78889999999


Q ss_pred             CCcCCccCCcccccC-CCCCEEECCCCc
Q 042919          399 MNAFNGSIPGALRRS-LSLTVLDLRDNE  425 (428)
Q Consensus       399 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~  425 (428)
                      +|.+.+..|..++.. .++..+++.+|+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            998888888877653 467788888775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.81  E-value=9.6e-11  Score=106.74  Aligned_cols=189  Identities=29%  Similarity=0.385  Sum_probs=128.1

Q ss_pred             ccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeC
Q 042919          225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL  304 (428)
Q Consensus       225 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  304 (428)
                      -...+++.|.+. .++..+.. +..|+.+.+..|.+. ..+..+.++..|+.++++.|++. ..+...+  .--|+.|-+
T Consensus        77 t~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~  150 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIV  150 (722)
T ss_pred             hhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEE
Confidence            345677888877 67777665 677888888888887 56778888899999999999886 5665532  336777777


Q ss_pred             CCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919          305 SDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV  383 (428)
Q Consensus       305 ~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~  383 (428)
                      ++|++..... ++..+.|..|+.+.|++. ..+..+..+.+|+.|.+..|.+. .+|+.++.+| |.+||+++|+++ .+
T Consensus       151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~i  226 (722)
T KOG0532|consen  151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YL  226 (722)
T ss_pred             ecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ec
Confidence            7777665443 556677777777777765 34555666777777777777766 5555566444 777777777777 44


Q ss_pred             CCcc-ccccCceEEccCCcCCccCCccc---ccCCCCCEEECCCC
Q 042919          384 PSSF-NLSSLRRLYMHMNAFNGSIPGAL---RRSLSLTVLDLRDN  424 (428)
Q Consensus       384 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~  424 (428)
                      |..+ .+..|+.|-|.+|++. .-|..+   ++..-.++|+..-|
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            4444 7777777777777776 434322   33445566666555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=3.5e-09  Score=69.76  Aligned_cols=59  Identities=42%  Similarity=0.520  Sum_probs=28.0

Q ss_pred             CcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCc
Q 042919          320 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ  378 (428)
Q Consensus       320 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~  378 (428)
                      +|++|++++|.+.......|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444444444444455555555444443344444444555555544443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.74  E-value=1.8e-09  Score=89.65  Aligned_cols=234  Identities=21%  Similarity=0.194  Sum_probs=154.6

Q ss_pred             hHhhhCCCccEEEccCCcCCCCCchhhhhcC---CCCCEEEecCCcc-----------CCcccCCCCCCCccEEecCCCc
Q 042919          169 SILLQQLDLRFIDLSHNKLQGIFPSWLLQNN---TKLDTLYLLNNSL-----------SGNFQLPSSKHDLLRLDISHNK  234 (428)
Q Consensus       169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~-----------~~~~~~~~~~~~L~~L~l~~~~  234 (428)
                      ..+..+..++.+++++|.+......++....   .+|+..++++--.           .-....+..||+|+..++++|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            4444456677777777776655555443333   3344444433211           1122345688999999999998


Q ss_pred             cccCCCchhhh---cCCCCcEEEccCCCCCCCCCcc-------------ccCCCCCCEEECcCcccCCCCchh----hhc
Q 042919          235 FSCQLPGNMGK---ILPELLSLNLSENGFEGRIPSS-------------MSEMKRLESLDLSSNNFSGELPRQ----FLS  294 (428)
Q Consensus       235 ~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~~~~----~~~  294 (428)
                      +....+..+..   .-+.|+.|.+++|.+..+...-             ...-|.|+++.+.+|++. ..+..    .+.
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~  182 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLE  182 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHH
Confidence            87666654432   2467999999999886332221             234688999999999876 43322    223


Q ss_pred             CCCCCCEEeCCCcccccccc-------cCCCCCcceeecccCccCcc----chhhhhcCCCCcEEEccCCcccccCCccc
Q 042919          295 GCFSLSFLSLSDNHLQGEVV-------FPNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLELDLSNNMLYGQIPPWF  363 (428)
Q Consensus       295 ~~~~L~~L~l~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  363 (428)
                      .-..|+.+.+..|.|.....       +..+.+|+.|+++.|.++..    ...+++.++.|+.|.+..|-+.......+
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            34689999999999886543       56789999999999988743    34456677889999999987764433222


Q ss_pred             ----C--CCCCCcEEeCCCCcCCcCCCCc-----c---ccccCceEEccCCcCC
Q 042919          364 ----G--NLSGLQFLDISENQLCGSVPSS-----F---NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       364 ----~--~~~~L~~L~L~~~~~~~~~~~~-----~---~~~~L~~L~l~~~~~~  403 (428)
                          .  ..|+|..|...+|.+.+.....     +   ..|-|..|.+.||++.
T Consensus       263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence                1  3578899999998765433322     2   5788888888888886

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=1.4e-09  Score=101.99  Aligned_cols=195  Identities=27%  Similarity=0.242  Sum_probs=83.0

Q ss_pred             cCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEE
Q 042919          198 NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESL  277 (428)
Q Consensus       198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  277 (428)
                      .+..++.+.++.+.+......+..+.+++.+++.++.+.. +...+. .+++|++|++++|.++..  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~-~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLS-SLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchh-hhhcchheeccccccccc--cchhhccchhhh
Confidence            3444555555555544322234445555555555555541 111111 145555555555555432  223444445555


Q ss_pred             ECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcc
Q 042919          278 DLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML  355 (428)
Q Consensus       278 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i  355 (428)
                      ++.+|.+. .+..  +..+..|+.+++.+|.+.....  ...+.+++.+.+.+|.+...  ..+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcch-hccC--CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence            55555544 2221  2224455555555555444443  24445555555555444321  1111122222224444444


Q ss_pred             cccCCcccCCCCC--CcEEeCCCCcCCcCCCCccccccCceEEccCCcCC
Q 042919          356 YGQIPPWFGNLSG--LQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFN  403 (428)
Q Consensus       356 ~~~~~~~~~~~~~--L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  403 (428)
                      +..-  ++...+.  |+.+++++|++.......-.+..+..|++.++++.
T Consensus       221 ~~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  221 SKLE--GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             eecc--CcccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence            3111  1111122  55555555555422111114455555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=1.2e-08  Score=102.40  Aligned_cols=103  Identities=24%  Similarity=0.212  Sum_probs=55.3

Q ss_pred             ccEEEcCCCC--CccchhH-hhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEec
Q 042919          154 LKALNLRNCS--LQALPSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDI  230 (428)
Q Consensus       154 L~~L~l~~~~--~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  230 (428)
                      |++|-+.++.  +..++.. +..++.|++||+++|.-....|..+ +.+-+|++|+++++.+...+.....+..|.+|++
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence            5566555554  3444333 4446666666666655444555554 4566666666666666655555555556666666


Q ss_pred             CCCccccCCCchhhhcCCCCcEEEccCC
Q 042919          231 SHNKFSCQLPGNMGKILPELLSLNLSEN  258 (428)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~  258 (428)
                      .........+.... .+++|++|.+...
T Consensus       626 ~~~~~l~~~~~i~~-~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  626 EVTGRLESIPGILL-ELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccchhh-hcccccEEEeecc
Confidence            55543323322222 2566666665544

>PLN03150 hypothetical protein; Provisional

Probab=98.70  E-value=2.4e-08  Score=98.08  Aligned_cols=85  Identities=39%  Similarity=0.577  Sum_probs=80.2

Q ss_pred             CCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECC
Q 042919          344 SLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLR  422 (428)
Q Consensus       344 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  422 (428)
                      .++.|+|+++.+.+.+|..+..+++|+.|+|++|.+.+..+..+ .+++|+.|++++|.+.+..|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999998999999999999999999999998888777 89999999999999999999999999999999999


Q ss_pred             CCccCC
Q 042919          423 DNEFSG  428 (428)
Q Consensus       423 ~~~~~~  428 (428)
                      +|+++|
T Consensus       499 ~N~l~g  504 (623)
T PLN03150        499 GNSLSG  504 (623)
T ss_pred             CCcccc
Confidence            999987

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=1.9e-09  Score=101.02  Aligned_cols=237  Identities=31%  Similarity=0.325  Sum_probs=103.3

Q ss_pred             ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCC
Q 042919          154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN  233 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (428)
                      ++.+++..+.++.+-..+..+.+|+.|++.+|.+...                         ......+++|+.|++++|
T Consensus        74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-------------------------~~~l~~~~~L~~L~ls~N  128 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-------------------------ENLLSSLVNLQVLDLSFN  128 (414)
T ss_pred             HHhhccchhhhhhhhcccccccceeeeeccccchhhc-------------------------ccchhhhhcchheecccc
Confidence            4455555555544333344455555555555555433                         222334444445555554


Q ss_pred             ccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch-hhhcCCCCCCEEeCCCcccccc
Q 042919          234 KFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR-QFLSGCFSLSFLSLSDNHLQGE  312 (428)
Q Consensus       234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~  312 (428)
                      .++....  +.. ++.|+.|++.+|.+...  ..+..++.|+.++++.|.+. .+.. . ...+..++.+.+.+|.+...
T Consensus       129 ~I~~i~~--l~~-l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  129 KITKLEG--LST-LTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             ccccccc--hhh-ccchhhheeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchhcc
Confidence            4432111  111 33455555555555422  23334555555555555544 2222 1 23445555555555555544


Q ss_pred             cccCCCCCcceeecccCccCccchhhhhcCC--CCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccc
Q 042919          313 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKAT--SLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLS  390 (428)
Q Consensus       313 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~  390 (428)
                      ..+..+..+..+++..+.+....  .+....  .|+.+++.++++. ..+..+..+..+..|++..+++....... ..+
T Consensus       202 ~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~-~~~  277 (414)
T KOG0531|consen  202 EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLE-RLP  277 (414)
T ss_pred             cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccccc-ccc
Confidence            44444444444444444443211  111112  2455555555554 22234444455555555555443221111 334


Q ss_pred             cCceEEccCCcCCcc---CCcc-cccCCCCCEEECCCCcc
Q 042919          391 SLRRLYMHMNAFNGS---IPGA-LRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       391 ~L~~L~l~~~~~~~~---~~~~-~~~~~~L~~L~l~~~~~  426 (428)
                      .+..+....+.+...   .... ....++++.+.+.++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  278 KLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             hHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence            444444554444311   1111 23344555555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=9.5e-09  Score=86.58  Aligned_cols=84  Identities=21%  Similarity=0.271  Sum_probs=43.5

Q ss_pred             CCCCcEEeCCCCccCCcccc-ccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCC--ccchhHhhhCCCc
Q 042919          101 IKSLEYLSLDDNNFEGLFSF-NSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL--QALPSILLQQLDL  177 (428)
Q Consensus       101 l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~l~~~~~~~~~L  177 (428)
                      ++.++++++.+|.++++... ..+.++|.|++|+++.|.........+ .+..+|+.+.+.++.+  +.....+..+|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            44455555555555443221 123345555555555444433333332 3333577777777655  4455556666677


Q ss_pred             cEEEccCC
Q 042919          178 RFIDLSHN  185 (428)
Q Consensus       178 ~~L~l~~~  185 (428)
                      ++|.++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            77777766

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=3.1e-08  Score=83.53  Aligned_cols=204  Identities=19%  Similarity=0.134  Sum_probs=116.6

Q ss_pred             ccEEEcCCCCCccc---hhHhhhCCCccEEEccCCcCCCCCc-hhhhhcCCCCCEEEecCCccCCcccCC-CCCCCccEE
Q 042919          154 LKALNLRNCSLQAL---PSILLQQLDLRFIDLSHNKLQGIFP-SWLLQNNTKLDTLYLLNNSLSGNFQLP-SSKHDLLRL  228 (428)
Q Consensus       154 L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L  228 (428)
                      ++-+.+.++.+...   ...-..++.++++++.+|.+.+... ..++.+++.|++|+++.|++....... ....+|+++
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            34455556655322   2333455678889999888876433 345678889999999988887655444 467788888


Q ss_pred             ecCCCccccCCCchhhhcCCCCcEEEccCCCCCCC--CCcccc-CCCCCCEEECcCcccCCCCc-hhhhcCCCCCCEEeC
Q 042919          229 DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGR--IPSSMS-EMKRLESLDLSSNNFSGELP-RQFLSGCFSLSFLSL  304 (428)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l  304 (428)
                      .+.+..+.+.-...+.+.+|.++.|.++.|.+.-.  ...... .-+.++++.+..|...--.. ......++++..+-+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            88887776666666666677788888777743211  011111 22455666665554220000 111123456666666


Q ss_pred             CCcccccccc---cCCCCCcceeecccCccCc-cchhhhhcCCCCcEEEccCCcccc
Q 042919          305 SDNHLQGEVV---FPNSTNLCWLYLNNNHFSG-KIQDGLSKATSLLELDLSNNMLYG  357 (428)
Q Consensus       305 ~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~  357 (428)
                      ..|.+.+...   ...++.+..|.+..+++.. ...+++..++.|..|.+.++++.+
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            6665443322   4444555555555555532 233455566666666666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.49  E-value=7.9e-08  Score=80.11  Aligned_cols=161  Identities=21%  Similarity=0.248  Sum_probs=88.7

Q ss_pred             CCCCCcEEeccCCcCCCCchHhh----hcCCCCCEEEccCCccC---c-------chhhhhccCCCCcEEeCCCCccCCc
Q 042919           52 ELKNLVELDLSKNNLYGHLSPCL----SNLTHIKVLDLSSNQLT---G-------NLQSVIANIKSLEYLSLDDNNFEGL  117 (428)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~  117 (428)
                      .+..+.+++++||.|.......+    .+-.+|+..++++-...   .       .+..++.+||+|+.++++.|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            36778888999888865544444    45567777777654211   1       2234566788888888888876544


Q ss_pred             ccc---ccccCCCCCcEEEccCCccccccCCCCC------------CCcCCccEEEcCCCCCccchh-----HhhhCCCc
Q 042919          118 FSF---NSLKNHSKLQVFKLSNSLVKIETEEFPG------------LPEYQLKALNLRNCSLQALPS-----ILLQQLDL  177 (428)
Q Consensus       118 ~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~l~~-----~~~~~~~L  177 (428)
                      .+.   ..+++...|++|.+++|.+....+.-..            ...+.|+.+....|.+...+.     .+..-.+|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            332   3566777888888887776433322110            112236666666655533222     12222256


Q ss_pred             cEEEccCCcCCCCCchhh----hhcCCCCCEEEecCCcc
Q 042919          178 RFIDLSHNKLQGIFPSWL----LQNNTKLDTLYLLNNSL  212 (428)
Q Consensus       178 ~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~  212 (428)
                      +++.+..|.+.......+    +.++.+|+.|++.+|.+
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf  226 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF  226 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence            666666555543322211    12445555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=2.1e-09  Score=100.92  Aligned_cols=126  Identities=27%  Similarity=0.189  Sum_probs=83.9

Q ss_pred             CCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccC
Q 042919          273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN  352 (428)
Q Consensus       273 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  352 (428)
                      .|.+.+++.|.+. .++ ..+.-++.++.|+++.|++.....+.++++|++|++++|.+..........+. |..|.+++
T Consensus       165 ~L~~a~fsyN~L~-~mD-~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMD-ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHH-hHH-HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            4666677766654 222 22445677777777777777766777788888888887776543333333333 88888888


Q ss_pred             CcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc--ccccCceEEccCCcCC
Q 042919          353 NMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       353 ~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~  403 (428)
                      |.++..  .++.++.+|+.||+++|-+.+...-..  .+..|+.|+|.||++-
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            877633  457777888888888887765433222  6778888888888764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=1e-08  Score=96.42  Aligned_cols=159  Identities=25%  Similarity=0.233  Sum_probs=114.5

Q ss_pred             cccccCCCCCcEEeccCCcCCCC---ch------------------Hhhh----------cCCCCCEEEccCCccCcchh
Q 042919           47 NTGICELKNLVELDLSKNNLYGH---LS------------------PCLS----------NLTHIKVLDLSSNQLTGNLQ   95 (428)
Q Consensus        47 ~~~~~~~~~L~~L~l~~~~~~~~---~~------------------~~~~----------~l~~L~~L~l~~~~~~~~~~   95 (428)
                      |.+|..++.||.|.+++|++...   .+                  ..|.          ....|.+.+++.|.++ ...
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD  180 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD  180 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence            34567889999999999987531   00                  0011          0123555566666555 455


Q ss_pred             hhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCC
Q 042919           96 SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL  175 (428)
Q Consensus        96 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~  175 (428)
                      .++.-++.++.|++++|++++.   ..+..|++|++||++.|.....+..-....  +|..|++++|.+..+ ..+.++.
T Consensus       181 ~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc--~L~~L~lrnN~l~tL-~gie~Lk  254 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC--KLQLLNLRNNALTTL-RGIENLK  254 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhh--hheeeeecccHHHhh-hhHHhhh
Confidence            6677888999999999999887   578999999999999888755443322222  499999999988777 4577888


Q ss_pred             CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCcc
Q 042919          176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL  212 (428)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  212 (428)
                      +|+.||++.|-+.+.-.-.++..+..|+.|++.+|++
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            9999999998777555444555677788888888865

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.21  E-value=8e-07  Score=87.34  Aligned_cols=80  Identities=23%  Similarity=0.386  Sum_probs=45.6

Q ss_pred             CCCcEEeccCCc-CCCCchHhh-hcCCCCCEEEccCCccC-cchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCc
Q 042919           54 KNLVELDLSKNN-LYGHLSPCL-SNLTHIKVLDLSSNQLT-GNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQ  130 (428)
Q Consensus        54 ~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  130 (428)
                      .+|++|+++|.. +....+..+ .-+|.|++|.+.+..+. ......+.++++|..||++++.++.+   ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            456667776643 222233333 34677777777666543 22344556667777777777766655   4566666666


Q ss_pred             EEEccC
Q 042919          131 VFKLSN  136 (428)
Q Consensus       131 ~L~l~~  136 (428)
                      .|.+.+
T Consensus       199 ~L~mrn  204 (699)
T KOG3665|consen  199 VLSMRN  204 (699)
T ss_pred             HHhccC
Confidence            655544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.20  E-value=3.9e-06  Score=67.12  Aligned_cols=104  Identities=24%  Similarity=0.194  Sum_probs=67.6

Q ss_pred             CCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccccc-CCcccCCCCCCcEEeC
Q 042919          296 CFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPPWFGNLSGLQFLDI  374 (428)
Q Consensus       296 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~L  374 (428)
                      ......+++++|.+.....+..++.|..|.+.+|+++...+..-..+++|..|.+.+|.|... --..++.||+|++|.+
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            345666777777777777777777777777777777755544444457777777777766532 1234667777777777


Q ss_pred             CCCcCCcCCCCcc----ccccCceEEccC
Q 042919          375 SENQLCGSVPSSF----NLSSLRRLYMHM  399 (428)
Q Consensus       375 ~~~~~~~~~~~~~----~~~~L~~L~l~~  399 (428)
                      -+|+++...--..    .+|+|+.||+.+
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            7777764322111    567777777665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.18  E-value=7.4e-07  Score=87.55  Aligned_cols=202  Identities=14%  Similarity=0.125  Sum_probs=122.7

Q ss_pred             CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcc-------------hhhhh--ccCCCCcEEeCCCCccCC
Q 042919           52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN-------------LQSVI--ANIKSLEYLSLDDNNFEG  116 (428)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------~~~~~--~~l~~L~~L~l~~~~~~~  116 (428)
                      ..-++..+++.+..........+.... |+++.+++......             +...+  ..-.+|++|++++.....
T Consensus        58 ~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s  136 (699)
T KOG3665|consen   58 RKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS  136 (699)
T ss_pred             hhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence            445677777776665544444444443 77777765432210             00111  112478889998864322


Q ss_pred             c-cccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCc-hh
Q 042919          117 L-FSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFP-SW  194 (428)
Q Consensus       117 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~  194 (428)
                      - .+.+.-..+|.|++|.+.+-.+..........+.++|..|++++++++.+ .++.++++|++|.+.+-.+..... ..
T Consensus       137 ~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~  215 (699)
T KOG3665|consen  137 NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLID  215 (699)
T ss_pred             ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence            2 12233456889999998886664443222222334699999999999888 778888999999888877664222 23


Q ss_pred             hhhcCCCCCEEEecCCccCCcc-------cCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEcc
Q 042919          195 LLQNNTKLDTLYLLNNSLSGNF-------QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLS  256 (428)
Q Consensus       195 ~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  256 (428)
                      + -.+++|+.|++|+.......       +....+|+|+.||.++..+.......+...-|+|+.+..-
T Consensus       216 L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  216 L-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             H-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            3 37899999999887654422       1233567788888877766655555444444556555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=2.2e-06  Score=51.57  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=19.3

Q ss_pred             cCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          391 SLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      +|++|++++|+++ .+|..+++|++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666655 34444556666666666666554

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.01  E-value=7.2e-07  Score=86.13  Aligned_cols=190  Identities=20%  Similarity=0.059  Sum_probs=99.3

Q ss_pred             hhCCCccEEEccCCc-CCCCCchhhhhcCCCCCEEEecCC-ccCC-----cccCCCCCCCccEEecCCCc-cccCCCchh
Q 042919          172 LQQLDLRFIDLSHNK-LQGIFPSWLLQNNTKLDTLYLLNN-SLSG-----NFQLPSSKHDLLRLDISHNK-FSCQLPGNM  243 (428)
Q Consensus       172 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~  243 (428)
                      ..+++|+.+.+.++. +.+.....+...++.|+.|+++++ ....     .......+++|+.++++.+. +++.....+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            335677777777764 333333445567777777777763 1111     11233355667777777666 444444445


Q ss_pred             hhcCCCCcEEEccCCC-CCCCCCc-cccCCCCCCEEECcCcccCCC-CchhhhcCCCCCCEEeCCCcccccccccCCCCC
Q 042919          244 GKILPELLSLNLSENG-FEGRIPS-SMSEMKRLESLDLSSNNFSGE-LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTN  320 (428)
Q Consensus       244 ~~~~~~L~~L~l~~~~-~~~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  320 (428)
                      +..+++|+.|.+.+|. +++.... ....++.|++|+++.|....+ ........+++++.+.+....        .+..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~--------~c~~  336 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN--------GCPS  336 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC--------CCcc
Confidence            5556677777766665 3433222 223466677777776654311 111123345555554433322        1455


Q ss_pred             cceeecccCccC---ccchhhhhcCCCCcEEEccCCcccccC-CcccCCCCCC
Q 042919          321 LCWLYLNNNHFS---GKIQDGLSKATSLLELDLSNNMLYGQI-PPWFGNLSGL  369 (428)
Q Consensus       321 L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L  369 (428)
                      ++.+.+.++...   ......+..++.++.+.+..+.+.... ...+.+|+.|
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            555555544331   223334567788888888777644322 2334445544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.98  E-value=8.6e-06  Score=65.22  Aligned_cols=85  Identities=24%  Similarity=0.311  Sum_probs=61.5

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK  133 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  133 (428)
                      .....++|++|.+...  +.|..++.|++|.+.+|+|+...+..-..+++|..|.+.+|.+..+.+...+..||+|++|.
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            3566777877776532  33667788888888888887666665566778888888888887777777777888877777


Q ss_pred             ccCCccc
Q 042919          134 LSNSLVK  140 (428)
Q Consensus       134 l~~~~~~  140 (428)
                      +-+|.+.
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            7766653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=7.6e-06  Score=49.20  Aligned_cols=36  Identities=44%  Similarity=0.702  Sum_probs=17.2

Q ss_pred             CCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919          344 SLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       344 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555554 33334555555555555555544

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.92  E-value=2.3e-06  Score=82.66  Aligned_cols=127  Identities=26%  Similarity=0.259  Sum_probs=65.1

Q ss_pred             CccEEEcCCCC-Ccc--chhHhhhCCCccEEEccCC-cCCCC---CchhhhhcCCCCCEEEecCCcc-CC--cccCCCCC
Q 042919          153 QLKALNLRNCS-LQA--LPSILLQQLDLRFIDLSHN-KLQGI---FPSWLLQNNTKLDTLYLLNNSL-SG--NFQLPSSK  222 (428)
Q Consensus       153 ~L~~L~l~~~~-~~~--l~~~~~~~~~L~~L~l~~~-~~~~~---~~~~~~~~~~~L~~L~l~~~~~-~~--~~~~~~~~  222 (428)
                      .|+.+.+.++. +..  +......+++|+.|+++++ .....   ........+.+|+.++++++.. ++  .......+
T Consensus       189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c  268 (482)
T KOG1947|consen  189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC  268 (482)
T ss_pred             hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence            46666666552 232  4455666667777777652 11111   1122344556677777766662 21  11112236


Q ss_pred             CCccEEecCCCc-cccCCCchhhhcCCCCcEEEccCCCCC-CC-CCccccCCCCCCEEEC
Q 042919          223 HDLLRLDISHNK-FSCQLPGNMGKILPELLSLNLSENGFE-GR-IPSSMSEMKRLESLDL  279 (428)
Q Consensus       223 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~-~~~~l~~~~~L~~L~l  279 (428)
                      ++|+.|.+..|. +++.....+...+++|+.|+++.|... +. ......++++++.+.+
T Consensus       269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            677777766665 455555555555667777777766442 11 1222334555555444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=5.5e-07  Score=67.22  Aligned_cols=132  Identities=26%  Similarity=0.219  Sum_probs=86.0

Q ss_pred             CCCEEECcCcccCCCCch--hhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEE
Q 042919          273 RLESLDLSSNNFSGELPR--QFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL  348 (428)
Q Consensus       273 ~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  348 (428)
                      .+..++++.|.+. .+..  ..+.....|..+++++|.+.....  ...++..+.|++.+|.+.+ .++.++.++.|+.|
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhc
Confidence            3556777777654 2322  223455677778888888776654  3456688888888888874 44458888888888


Q ss_pred             EccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCC
Q 042919          349 DLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIP  407 (428)
Q Consensus       349 ~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  407 (428)
                      +++.|++. ..|+.+..+.++..|+..+|.+.......+.....-...+.+++..+..+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCc
Confidence            88888887 66666777788888888888776555554422222333345555554444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.86  E-value=3.9e-05  Score=59.26  Aligned_cols=122  Identities=23%  Similarity=0.302  Sum_probs=50.5

Q ss_pred             hhhcCCCCCCEEeCCCc-ccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCC
Q 042919          291 QFLSGCFSLSFLSLSDN-HLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGL  369 (428)
Q Consensus       291 ~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L  369 (428)
                      ..|.++.+|+.+.+... .......+..+++|+.+.+..+ +......+|.++.+++.+.+.+ .+.......|..++.|
T Consensus         6 ~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    6 NAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            33444555555555421 1112223555556666666543 4444555666666677777755 3332344566667777


Q ss_pred             cEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCC
Q 042919          370 QFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLT  417 (428)
Q Consensus       370 ~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  417 (428)
                      +.+++..+ +.......+ .+ .|+.+.+.+ .+..+-...|..|++|+
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            77777654 443444444 44 777777765 34435556677776664

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=0.00018  Score=65.50  Aligned_cols=136  Identities=17%  Similarity=0.187  Sum_probs=71.8

Q ss_pred             hcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCC-CCCCCCCccccCCCCCC
Q 042919          197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSEN-GFEGRIPSSMSEMKRLE  275 (428)
Q Consensus       197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~  275 (428)
                      ..+.+++.|++++|.++..+   .-..+|++|.+++|.--..++..+   +++|++|++.+| .+. ..|      ++|+
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sLe  115 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ESVR  115 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cccc
Confidence            35688888888888766553   233468888887765433445433   357888888877 332 222      3466


Q ss_pred             EEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCC
Q 042919          276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN  353 (428)
Q Consensus       276 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  353 (428)
                      +|++..+... .+.    .-+++|+.|.+.++.......  -.-.++|++|++.+|.... .+..+  ..+|+.|+++.+
T Consensus       116 ~L~L~~n~~~-~L~----~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        116 SLEIKGSATD-SIK----NVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHIE  187 (426)
T ss_pred             eEEeCCCCCc-ccc----cCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccccc--cccCcEEEeccc
Confidence            6666544332 111    113456666664322111111  1122566667776665431 22222  246666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=0.00015  Score=66.07  Aligned_cols=134  Identities=14%  Similarity=0.175  Sum_probs=86.8

Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCc-ccccccccCCCCCcceee
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN-HLQGEVVFPNSTNLCWLY  325 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~  325 (428)
                      +.+++.|++++|.+.. .|   .-.++|++|.+++|.-...++...   +.+|+.|.+++| .+.     .-.++|+.|+
T Consensus        51 ~~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-----sLP~sLe~L~  118 (426)
T PRK15386         51 ARASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-----GLPESVRSLE  118 (426)
T ss_pred             hcCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-----ccccccceEE
Confidence            6889999999998773 44   123469999999876543555432   468999999988 433     2245788888


Q ss_pred             cccCccCccchhhhhc-CCCCcEEEccCCc-cc-ccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCc
Q 042919          326 LNNNHFSGKIQDGLSK-ATSLLELDLSNNM-LY-GQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNA  401 (428)
Q Consensus       326 l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~-i~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~  401 (428)
                      +.++....     +.. .++|+.|.+.++. .. ...+..  -.++|+.|++++|... ..+..+ ..+|+.|+++.+.
T Consensus       119 L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L-P~SLk~L~ls~n~  188 (426)
T PRK15386        119 IKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL-PESLQSITLHIEQ  188 (426)
T ss_pred             eCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc-cccCcEEEecccc
Confidence            87654432     122 3568888875432 11 011211  1258999999999865 333332 4799999998763

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.67  E-value=0.00018  Score=55.55  Aligned_cols=87  Identities=22%  Similarity=0.343  Sum_probs=43.3

Q ss_pred             cccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCC
Q 042919           47 NTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNH  126 (428)
Q Consensus        47 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  126 (428)
                      ..+|.++++|+.+.+.. .+.......|..+++|+.+.+... +......+|..++.++.+.+.+ .+..+ +...+..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i-~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSI-GDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE--TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccc-cccccccc
Confidence            34566777777777764 344444556777777777777664 5444555667776777777754 33222 12345556


Q ss_pred             CCCcEEEccCC
Q 042919          127 SKLQVFKLSNS  137 (428)
Q Consensus       127 ~~L~~L~l~~~  137 (428)
                      ++|+.+.+..+
T Consensus        81 ~~l~~i~~~~~   91 (129)
T PF13306_consen   81 TNLKNIDIPSN   91 (129)
T ss_dssp             TTECEEEETTT
T ss_pred             ccccccccCcc
Confidence            66666665443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.64  E-value=3.7e-06  Score=62.90  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=16.6

Q ss_pred             ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCC
Q 042919          154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQ  188 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~  188 (428)
                      |+.++++.|.+...|..+..+.++-.|+..++...
T Consensus       102 Lr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  102 LRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence            44444444444444444444444444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=1e-05  Score=68.07  Aligned_cols=98  Identities=24%  Similarity=0.223  Sum_probs=51.1

Q ss_pred             CCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCcc-chhhhhcCCCCcEEEcc
Q 042919          273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGK-IQDGLSKATSLLELDLS  351 (428)
Q Consensus       273 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~  351 (428)
                      +.++|++.+|.+. ++  .+...++.|+.|.|+-|.|.....+..|++|++|+|..|.+.+. ....+.++++|+.|+|.
T Consensus        20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            3445555555543 22  22344566666666666666666666666666666666655432 12334566666666666


Q ss_pred             CCcccccCCc-----ccCCCCCCcEEe
Q 042919          352 NNMLYGQIPP-----WFGNLSGLQFLD  373 (428)
Q Consensus       352 ~~~i~~~~~~-----~~~~~~~L~~L~  373 (428)
                      .|.-.+..+.     .+.-+|+|++||
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            5544332221     233455666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=5.8e-06  Score=69.52  Aligned_cols=82  Identities=26%  Similarity=0.212  Sum_probs=40.2

Q ss_pred             CCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccC-CcccCCCCCCcEEeCC
Q 042919          297 FSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI-PPWFGNLSGLQFLDIS  375 (428)
Q Consensus       297 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~L~  375 (428)
                      .+.++|+..+|.+.+......|+.|+.|.|+-|.++..  ..+..|++|++|+|..|.|.+.. -..+.++|+|+.|.|.
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            34455555555555554555555555555555555422  23445555555555555543210 1123445555555555


Q ss_pred             CCcCC
Q 042919          376 ENQLC  380 (428)
Q Consensus       376 ~~~~~  380 (428)
                      .|+-.
T Consensus        97 ENPCc  101 (388)
T KOG2123|consen   97 ENPCC  101 (388)
T ss_pred             cCCcc
Confidence            55433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.35  E-value=0.00011  Score=61.62  Aligned_cols=104  Identities=20%  Similarity=0.196  Sum_probs=74.8

Q ss_pred             cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCC--cccccCCcccCCCCCCcEEeCCCCcCCcCCCCc--c-cc
Q 042919          315 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN--MLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS--F-NL  389 (428)
Q Consensus       315 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~-~~  389 (428)
                      ...+..|+.|++.++.++..  ..+..+++|+.|.++.|  ++...++.....+|+|++|.+++|++.. +...  + .+
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKEL  115 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhh
Confidence            34556778888887776532  34566788999999999  6665666667777999999999998763 1111  1 67


Q ss_pred             ccCceEEccCCcCCccCC---cccccCCCCCEEEC
Q 042919          390 SSLRRLYMHMNAFNGSIP---GALRRSLSLTVLDL  421 (428)
Q Consensus       390 ~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l  421 (428)
                      ++|.+|++.+|..+....   ..|..+++|+.||-
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            789999999998875332   34667788887764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.20  E-value=0.00015  Score=60.81  Aligned_cols=83  Identities=28%  Similarity=0.276  Sum_probs=38.7

Q ss_pred             CCCEEeCCCcccccccccCCCCCcceeecccC--ccCccchhhhhcCCCCcEEEccCCccccc-CCcccCCCCCCcEEeC
Q 042919          298 SLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNN--HFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPPWFGNLSGLQFLDI  374 (428)
Q Consensus       298 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~L  374 (428)
                      .|+.+.+.++.++....+..+++|+.|.++.|  ++..........+++|+++++++|+|... --..+..+++|..|++
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl  123 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL  123 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence            44444444444444444455555555555555  33222222223345666666666655421 1122344455556666


Q ss_pred             CCCcCC
Q 042919          375 SENQLC  380 (428)
Q Consensus       375 ~~~~~~  380 (428)
                      ..|..+
T Consensus       124 ~n~~~~  129 (260)
T KOG2739|consen  124 FNCSVT  129 (260)
T ss_pred             ccCCcc
Confidence            665544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.61  E-value=0.00018  Score=68.00  Aligned_cols=187  Identities=24%  Similarity=0.159  Sum_probs=89.0

Q ss_pred             ccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcC----CCCcE
Q 042919          177 LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKIL----PELLS  252 (428)
Q Consensus       177 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~  252 (428)
                      +..+.+.+|.+.+.....+...                    ....++|+.|+++++.+.+.....+...+    ..+++
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~--------------------l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~  148 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQA--------------------LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQT  148 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHH--------------------hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHH
Confidence            6677777777766554444322                    22333444444444444322222222211    23445


Q ss_pred             EEccCCCCCCC----CCccccCCCCCCEEECcCcccCCCCc---hhh----hcCCCCCCEEeCCCcccccccc------c
Q 042919          253 LNLSENGFEGR----IPSSMSEMKRLESLDLSSNNFSGELP---RQF----LSGCFSLSFLSLSDNHLQGEVV------F  315 (428)
Q Consensus       253 L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~----~~~~~~L~~L~l~~~~~~~~~~------~  315 (428)
                      |++..|.++..    ....+...+.++.++++.|.+.....   ...    +.....+++|.+..|.++....      +
T Consensus       149 L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l  228 (478)
T KOG4308|consen  149 LELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVL  228 (478)
T ss_pred             HHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHH
Confidence            55555555432    22334445666667776666531110   111    1123456666666665553222      3


Q ss_pred             CCCCC-cceeecccCccCccch----hhhhcC-CCCcEEEccCCcccccC----CcccCCCCCCcEEeCCCCcCCcCC
Q 042919          316 PNSTN-LCWLYLNNNHFSGKIQ----DGLSKA-TSLLELDLSNNMLYGQI----PPWFGNLSGLQFLDISENQLCGSV  383 (428)
Q Consensus       316 ~~~~~-L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~L~~~~~~~~~  383 (428)
                      ...+. +.+|++..|.+.+...    ..+..+ +.+++++++.|.+++..    ...+..++.++.+.++.|++.+..
T Consensus       229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~  306 (478)
T KOG4308|consen  229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG  306 (478)
T ss_pred             hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence            33444 5556666666554322    223333 45566666666665432    223444556666666666655433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.41  E-value=0.00012  Score=69.18  Aligned_cols=179  Identities=25%  Similarity=0.276  Sum_probs=83.6

Q ss_pred             ccEEecCCCccccCCCchhhh---cCCCCcEEEccCCCCCCCCCc----cccCC-CCCCEEECcCcccCCCCchh---hh
Q 042919          225 LLRLDISHNKFSCQLPGNMGK---ILPELLSLNLSENGFEGRIPS----SMSEM-KRLESLDLSSNNFSGELPRQ---FL  293 (428)
Q Consensus       225 L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~~~~---~~  293 (428)
                      +..+.+.+|.+.......++.   ..+.|+.|++++|.+.+....    .+... ..+++|++..|.+++.....   .+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            556666666665443333322   234566667777666532221    12222 34555666666554332221   12


Q ss_pred             cCCCCCCEEeCCCcccccccc------c----CCCCCcceeecccCccCccc----hhhhhcCCC-CcEEEccCCccccc
Q 042919          294 SGCFSLSFLSLSDNHLQGEVV------F----PNSTNLCWLYLNNNHFSGKI----QDGLSKATS-LLELDLSNNMLYGQ  358 (428)
Q Consensus       294 ~~~~~L~~L~l~~~~~~~~~~------~----~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~-L~~L~l~~~~i~~~  358 (428)
                      .....++.+++..|.+.....      +    ....++++|.+.+|.++...    ...+...+. +..|++.+|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            224455555555555532211      1    13445556666665554221    122333333 44455555555432


Q ss_pred             ----CCcccCCC-CCCcEEeCCCCcCCcCCCCcc-----ccccCceEEccCCcCC
Q 042919          359 ----IPPWFGNL-SGLQFLDISENQLCGSVPSSF-----NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       359 ----~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~  403 (428)
                          ..+.+..+ +.++.+++++|.+++.....+     .++.++.+.+++|++.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence                12233333 445556666665554444333     3455555555555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.38  E-value=0.001  Score=53.72  Aligned_cols=85  Identities=19%  Similarity=0.141  Sum_probs=62.4

Q ss_pred             CCcceeecccCccCccchhhhhcCCCCcEEEccCCc-ccccCCcccC-CCCCCcEEeCCCCc-CCcCCCCcc-ccccCce
Q 042919          319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM-LYGQIPPWFG-NLSGLQFLDISENQ-LCGSVPSSF-NLSSLRR  394 (428)
Q Consensus       319 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~-~~~~L~~L~L~~~~-~~~~~~~~~-~~~~L~~  394 (428)
                      ..++.++-+++.+..+..+.+..+++++.|.+.+|. +.+.--+.++ -.++|+.|+|++|+ ||+.....+ .+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            357788888888888888888889999999998885 3322111122 34789999999995 666655555 7899999


Q ss_pred             EEccCCcCC
Q 042919          395 LYMHMNAFN  403 (428)
Q Consensus       395 L~l~~~~~~  403 (428)
                      |.+.+=+..
T Consensus       181 L~l~~l~~v  189 (221)
T KOG3864|consen  181 LHLYDLPYV  189 (221)
T ss_pred             HHhcCchhh
Confidence            999876544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.29  E-value=0.0019  Score=52.17  Aligned_cols=81  Identities=21%  Similarity=0.187  Sum_probs=60.2

Q ss_pred             CCCEEeCCCcccccccc--cCCCCCcceeecccCcc-Cccchhhhhc-CCCCcEEEccCC-cccccCCcccCCCCCCcEE
Q 042919          298 SLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHF-SGKIQDGLSK-ATSLLELDLSNN-MLYGQIPPWFGNLSGLQFL  372 (428)
Q Consensus       298 ~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~-~~~~~~~l~~-~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L  372 (428)
                      .++.++-+++.|...+.  +..++.++.|.+.+|.- .+...+.+++ .++|+.|+|++| .||+....++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            56777778877765544  78888999999988853 3333333433 588999999988 6887777888889999999


Q ss_pred             eCCCCc
Q 042919          373 DISENQ  378 (428)
Q Consensus       373 ~L~~~~  378 (428)
                      .+.+=+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            887754

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.18  E-value=0.0085  Score=29.74  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=13.2

Q ss_pred             cCceEEccCCcCCccCCccccc
Q 042919          391 SLRRLYMHMNAFNGSIPGALRR  412 (428)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~  412 (428)
                      +|+.|++++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4667777777776 55555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.20  E-value=0.039  Score=27.33  Aligned_cols=17  Identities=35%  Similarity=0.557  Sum_probs=10.0

Q ss_pred             ccEEEcCCCCCccchhH
Q 042919          154 LKALNLRNCSLQALPSI  170 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~  170 (428)
                      |++|++++|+++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            55666666665555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.54  E-value=0.095  Score=24.01  Aligned_cols=15  Identities=47%  Similarity=0.795  Sum_probs=6.2

Q ss_pred             ccEEEcCCCCCccch
Q 042919          154 LKALNLRNCSLQALP  168 (428)
Q Consensus       154 L~~L~l~~~~~~~l~  168 (428)
                      |++|++++|++.++|
T Consensus         3 L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    3 LRTLDLSNNRLTSLP   17 (17)
T ss_dssp             -SEEEETSS--SSE-
T ss_pred             cCEEECCCCCCCCCc
Confidence            555566555555443

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.06  E-value=0.074  Score=26.92  Aligned_cols=20  Identities=30%  Similarity=0.275  Sum_probs=9.4

Q ss_pred             CCcceeecccCccCccchhh
Q 042919          319 TNLCWLYLNNNHFSGKIQDG  338 (428)
Q Consensus       319 ~~L~~L~l~~~~~~~~~~~~  338 (428)
                      ++|++|++++|.+++.....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            45556666666555444433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.65  E-value=0.018  Score=47.83  Aligned_cols=83  Identities=24%  Similarity=0.265  Sum_probs=39.5

Q ss_pred             cCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEE
Q 042919          341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVL  419 (428)
Q Consensus       341 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  419 (428)
                      .+...+.||++.+++. ..-.-|+-++.|.+|+++.|.+. ..+..+ +...++.++..+|... -.|..+++.|+++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            3344444555444432 11222333344555555555443 233333 4444555555555554 555555566666666


Q ss_pred             ECCCCcc
Q 042919          420 DLRDNEF  426 (428)
Q Consensus       420 ~l~~~~~  426 (428)
                      +..++++
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            5555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.00  E-value=0.53  Score=24.22  Aligned_cols=13  Identities=31%  Similarity=0.465  Sum_probs=5.9

Q ss_pred             cCceEEccCCcCC
Q 042919          391 SLRRLYMHMNAFN  403 (428)
Q Consensus       391 ~L~~L~l~~~~~~  403 (428)
                      +|++|++++|.+.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.00  E-value=0.53  Score=24.22  Aligned_cols=13  Identities=31%  Similarity=0.465  Sum_probs=5.9

Q ss_pred             cCceEEccCCcCC
Q 042919          391 SLRRLYMHMNAFN  403 (428)
Q Consensus       391 ~L~~L~l~~~~~~  403 (428)
                      +|++|++++|.+.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	428
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-25
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-08
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-25
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-08
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		8e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		8e-05
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		4e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		5e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		5e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 160/363 (44%), Gaps = 33/363 (9%)
Query: 56  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 115
           L  LD+S N L G  S  +S  T +K+L++SSNQ  G +  +   +KSL+YLSL +N F 
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 279
Query: 116 GLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP-SILLQQ 174
           G            L    LS +        F G            N     LP   LL+ 
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 175 LDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNK 234
             L+ +DLS N+  G  P  L   +  L TL L +N+ SG   LP+              
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LPNL------------- 385
Query: 235 FSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQXXX 294
             CQ P N  + L           GF G+IP ++S    L SL LS N  SG +P     
Sbjct: 386 --CQNPKNTLQEL------YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Query: 295 XXXXXXXXXXXDNHLQGEVVFPNS----TNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350
                       N L+GE+  P        L  L L+ N  +G+I  GLS  T+L  + L
Sbjct: 438 LSKLRDLKLWL-NMLEGEI--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGA 409
           SNN L G+IP W G L  L  L +S N   G++P+   +  SL  L ++ N FNG+IP A
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 410 LRR 412
           + +
Sbjct: 555 MFK 557

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 13/231 (5%)
Query: 206 YLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLP-----GNMGKILPXXXXXXXXXXGF 260
           +L N+ ++G+         L  LD+S N  S  +      G+   +             F
Sbjct: 80  FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL--KFLNVSSNTLDF 137
Query: 261 EGRIPSSMSEMKRLESLDLSSNNFSGE--LPRQXXXXXXXXXXXXXXDNHLQGEVVFPNS 318
            G++   + ++  LE LDLS+N+ SG   +                  N + G+V     
Sbjct: 138 PGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 196
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ 378
            NL +L +++N+FS  I   L   ++L  LD+S N L G         + L+ L+IS NQ
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 379 LCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSL-SLTVLDLRDNEFSG 428
             G +P    L SL+ L +  N F G IP  L  +  +LT LDL  N F G
Sbjct: 256 FVGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 160/363 (44%), Gaps = 33/363 (9%)
Query: 56  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 115
           L  LD+S N L G  S  +S  T +K+L++SSNQ  G +  +   +KSL+YLSL +N F 
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 282
Query: 116 GLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP-SILLQQ 174
           G            L    LS +        F G            N     LP   LL+ 
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 175 LDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNK 234
             L+ +DLS N+  G  P  L   +  L TL L +N+ SG   LP+              
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LPNL------------- 388
Query: 235 FSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQXXX 294
             CQ P N  + L           GF G+IP ++S    L SL LS N  SG +P     
Sbjct: 389 --CQNPKNTLQEL------YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 295 XXXXXXXXXXXDNHLQGEVVFPNS----TNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350
                       N L+GE+  P        L  L L+ N  +G+I  GLS  T+L  + L
Sbjct: 441 LSKLRDLKLWL-NMLEGEI--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGA 409
           SNN L G+IP W G L  L  L +S N   G++P+   +  SL  L ++ N FNG+IP A
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 410 LRR 412
           + +
Sbjct: 558 MFK 560

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 13/231 (5%)
Query: 206 YLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLP-----GNMGKILPXXXXXXXXXXGF 260
           +L N+ ++G+         L  LD+S N  S  +      G+   +             F
Sbjct: 83  FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL--KFLNVSSNTLDF 140
Query: 261 EGRIPSSMSEMKRLESLDLSSNNFSGE--LPRQXXXXXXXXXXXXXXDNHLQGEVVFPNS 318
            G++   + ++  LE LDLS+N+ SG   +                  N + G+V     
Sbjct: 141 PGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 199
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ 378
            NL +L +++N+FS  I   L   ++L  LD+S N L G         + L+ L+IS NQ
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 379 LCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSL-SLTVLDLRDNEFSG 428
             G +P    L SL+ L +  N F G IP  L  +  +LT LDL  N F G
Sbjct: 259 FVGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 112/250 (44%), Gaps = 19/250 (7%)
Query: 151 EYQLKALNLRNCSLQ---ALPSILLQQLDLRFIDLSH-NKLQGIFPSWLLQNNTKLDTLY 206
            Y++  L+L   +L     +PS L     L F+ +   N L G  P  + +  T+L  LY
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLY 107
Query: 207 LLNNSLSGNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIP 265
           + + ++SG      S    L+ LD S+N  S  LP ++   LP             G IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIP 166
Query: 266 SSMSEMKRL-ESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGE--VVFPNSTNLC 322
            S     +L  S+ +S N  +G++P                 N L+G+  V+F +  N  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR--NMLEGDASVLFGSDKNTQ 224
Query: 323 WLYLNNNHFS---GKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379
            ++L  N  +   GK+  GLSK  +L  LDL NN +YG +P     L  L  L++S N L
Sbjct: 225 KIHLAKNSLAFDLGKV--GLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 380 CGSVPSSFNL 389
           CG +P   NL
Sbjct: 281 CGEIPQGGNL 290

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ 378
           T L +LY+ + + SG I D LS+  +L+ LD S N L G +PP   +L  L  +    N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 379 LCGSVPSSFNLSSLRRLYMHM----NAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           + G++P S+   S  +L+  M    N   G IP     +L+L  +DL  N   G
Sbjct: 161 ISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-ANLNLAFVDLSRNMLEG 211

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 266 SSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQG--EVVFPNSTNLCW 323
           S++ E+  L  L L+ N     LP                +N LQ   + VF   TNL +
Sbjct: 79  SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383
           L L +N      +    K T+L ELDLS N L       F  L+ L+ L + +NQL  SV
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSV 196
Query: 384 PSSF--NLSSLRRLYMHMNAFNGSIPG 408
           P      L+SL+ +++H N ++ + PG
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCPG 223

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 23/220 (10%)
Query: 29  SVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSN 88
           SV+ S +K   +P  +  +T         +LDL  N L    S     LT +++L L+ N
Sbjct: 20  SVDCSSKKLTAIPSNIPADTK--------KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 89  QLTGNLQSVIANIKSLEYLSLDDNNFEGL--FSFNSLKNHSKLQVFKLSNSLVKIETEEF 146
           +L      +   +K+LE L + DN  + L    F+ L N ++L++ +  N L  +    F
Sbjct: 72  KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR--NQLKSLPPRVF 129
Query: 147 PGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTL 205
             L   +L  L+L    LQ+LP  +  +L  L+ + L +N+L+ + P       T+L TL
Sbjct: 130 DSL--TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTL 186
Query: 206 YLLNNSLSGNFQLPSSKHDLLR----LDISHNKFSCQLPG 241
            L NN L    ++P    D L     L +  N + C   G
Sbjct: 187 KLDNNQLK---RVPEGAFDSLEKLKMLQLQENPWDCTCNG 223

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 36/183 (19%)
Query: 40  VPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA 99
           +PL VF  TG   L NL +LD+S+N +   L     +L ++K L++  N L        +
Sbjct: 95  IPLGVF--TG---LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 100 NIKSLEYLSLDDNNFEGL------------------FSFNSLKNHSKLQVFKLSNSLVKI 141
            + SLE L+L+  N   +                   + N+++++S  ++++L      +
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK----VL 205
Query: 142 ETEEFPGLPEYQ--------LKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFP 192
           E   +P L            L +L++ +C+L A+P + ++ L  LRF++LS+N +  I  
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265
Query: 193 SWL 195
           S L
Sbjct: 266 SML 268

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 30/212 (14%)
Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
            L++L  L LS+N++        + L ++  L+L  N+LT         +  L+ L L +
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 112 NNFEGL--FSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
           N  E +  ++FN + +  +L + +L   L  I    F GL    L+ LNL  C+L+ +P+
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKR-LSYISEGAFEGLS--NLRYLNLAMCNLREIPN 202
Query: 170 ILLQQLDLRFIDLSHNKLQGIFPS-----------WLLQNNTK---------LDTLYLLN 209
            L   + L  +DLS N L  I P            W++Q+  +         L +L  +N
Sbjct: 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 210 NSLSGNFQLP----SSKHDLLRLDISHNKFSC 237
            + +    LP    +  H L R+ + HN ++C
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 266 SSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQG--EVVFPNSTNLCW 323
           S++ E+  L  L L+ N     LP                +N LQ   + VF   TNL +
Sbjct: 79  SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383
           LYL +N      +    K T+L  LDL NN L       F  L+ L+ L +++NQL  SV
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL-KSV 196
Query: 384 PSSF--NLSSLRRLYMHMNAFN 403
           P      L+SL  +++  N ++
Sbjct: 197 PDGVFDRLTSLTHIWLLNNPWD 218

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 64  NNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSL 123
           N + G     L +L H   LDLS N L+    S    + SL+YL+L  N ++ L   +  
Sbjct: 63  NTIEGDAFYSLGSLEH---LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 124 KNHSKLQVFKLSN--SLVKIETEEFPGLP---EYQLKALNLRNCSLQALPSI 170
            N + LQ  ++ N  +  +I   +F GL    E ++KAL+LRN   Q+L SI
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 64  NNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSL 123
           N + G     L +L H   LDLS N L+    S    + SL+YL+L  N ++ L   +  
Sbjct: 89  NTIEGDAFYSLGSLEH---LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 145
Query: 124 KNHSKLQVFKLSN--SLVKIETEEFPGLP---EYQLKALNLRNCSLQALPSI 170
            N + LQ  ++ N  +  +I   +F GL    E ++KAL+LRN   Q+L SI
Sbjct: 146 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	428
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  257 bits (659), Expect = 1e-78
 Identities = 126/394 (31%), Positives = 188/394 (47%), Gaps = 22/394 (5%)

Query: 49  GICELKNLVELDLSKNNLYGHLSP--CLSNLTHIKVLDLSSNQLTGNLQ-SVIANIKSLE 105
           G     +L  LDLS+N+L G ++    L + + +K L++SSN L    + S    + SLE
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154

Query: 106 YLSLDDNNFEG--LFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNC 162
            L L  N+  G  +  +       +L+   +S N +    + +        L+ L++ + 
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI----SGDVDVSRCVNLEFLDVSSN 210

Query: 163 SLQ-ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSS 221
           +    +P +      L+ +D+S NKL G F   +    T+L  L + +N   G   +P  
Sbjct: 211 NFSTGIPFLGDCS-ALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVG--PIPPL 266

Query: 222 K-HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS 280
               L  L ++ NKF+ ++P  +      L  L+LS N F G +P        LESL LS
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHFSGKI-- 335
           SNNFSGELP   L     L  L LS N   GE+   +   S +L  L L++N+FSG I  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 336 QDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRR 394
               +   +L EL L NN   G+IPP   N S L  L +S N L G++PSS  +LS LR 
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 395 LYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           L + +N   G IP  L    +L  L L  N+ +G
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  243 bits (622), Expect = 3e-73
 Identities = 117/388 (30%), Positives = 177/388 (45%), Gaps = 21/388 (5%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           + +   L  LD+S N L G  S  +S  T +K+L++SSNQ  G +      +KSL+YLSL
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSL 276

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQ-AL 167
            +N F G            L    LS N         F       L++L L + +    L
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS--LLESLALSSNNFSGEL 334

Query: 168 PSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSS----- 221
           P   L ++  L+ +DLS N+  G  P  L   +  L TL L +N+ SG   +  +     
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG--PILPNLCQNP 392

Query: 222 KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSS 281
           K+ L  L + +N F+ ++P  +     EL+SL+LS N   G IPSS+  + +L  L L  
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 282 NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGL 339
           N   GE+P Q L    +L  L L  N L GE+     N TNL W+ L+NN  +G+I   +
Sbjct: 452 NMLEGEIP-QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 340 SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHM 399
            +  +L  L LSNN   G IP   G+   L +LD++ N   G++P++    S +   +  
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK---IAA 567

Query: 400 NAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           N   G     ++            N   
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLE 595

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  220 bits (563), Expect = 7e-65
 Identities = 108/394 (27%), Positives = 174/394 (44%), Gaps = 48/394 (12%)

Query: 51  CELKNLVELDLSKNNLY---GHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
           C    +  +DLS   L      +S  L +LT ++ L LS++ + G++        SL  L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105

Query: 108 SLDDNNFEGLF-SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQA 166
            L  N+  G   +  SL + S L+   +S+                     N  +   + 
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSS---------------------NTLDFPGKV 144

Query: 167 LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNN--TKLDTLYLLNNSLSGNFQLPSSKHD 224
              + L    L  +DLS N + G      + ++   +L  L +  N +SG+  +    + 
Sbjct: 145 SGGLKLNS--LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN- 201

Query: 225 LLRLDISHNKFSCQLP--GNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282
           L  LD+S N FS  +P  G+       L  L++S N   G    ++S    L+ L++SSN
Sbjct: 202 LEFLDVSSNNFSTGIPFLGD----CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQDGL 339
            F G +P        SL +LSL++N   GE+   +      L  L L+ NHF G +    
Sbjct: 258 QFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 340 SKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPSSF-NLS-SLRRLY 396
              + L  L LS+N   G++P      + GL+ LD+S N+  G +P S  NLS SL  L 
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 397 MHMNAFNGSIPGALRRSL--SLTVLDLRDNEFSG 428
           +  N F+G I   L ++   +L  L L++N F+G
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  202 bits (517), Expect = 2e-58
 Identities = 103/385 (26%), Positives = 163/385 (42%), Gaps = 46/385 (11%)

Query: 55  NLVELDLSKNNLYGHLSPCLSN--LTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           +L+ LDLS NN  G + P L       ++ L L +N  TG +   ++N   L  L L  N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 113 NFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ-ALPSIL 171
              G    +SL + SKL+                          L L    L+  +P  L
Sbjct: 429 YLSGTIP-SSLGSLSKLRD-------------------------LKLWLNMLEGEIPQEL 462

Query: 172 LQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSS---KHDLLRL 228
           +    L  + L  N L G  PS L  N T L+ + L NN L+G    P       +L  L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEI--PKWIGRLENLAIL 519

Query: 229 DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288
            +S+N FS  +P  +G     L+ L+L+ N F G IP++M +     S  +++N  +G+ 
Sbjct: 520 KLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKR 574

Query: 289 PRQFLSGCFSLSFLSLSDNHLQGEVVFPNS----TNLCWLYLNNNHFSGKIQDGLSKATS 344
              ++           + N L+ + +        +      + +  + G          S
Sbjct: 575 Y-VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 345 LLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFN 403
           ++ LD+S NML G IP   G++  L  L++  N + GS+P    +L  L  L +  N  +
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 404 GSIPGALRRSLSLTVLDLRDNEFSG 428
           G IP A+     LT +DL +N  SG
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  189 bits (483), Expect = 1e-53
 Identities = 88/352 (25%), Positives = 139/352 (39%), Gaps = 40/352 (11%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           +     LV L LS N L G +   L +L+ ++ L L  N L G +   +  +K+LE L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALP 168
           D N+  G    + L N + L    LS N L    T E P                +  L 
Sbjct: 474 DFNDLTGEIP-SGLSNCTNLNWISLSNNRL----TGEIP--------------KWIGRLE 514

Query: 169 SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL 228
           +       L  + LS+N   G  P+ L  +   L  L L  N  +G   +P++       
Sbjct: 515 N-------LAILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGT--IPAAMFKQ-SG 563

Query: 229 DISHNKFSCQLPGNMGKI-LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGE 287
            I+ N  + +    +    + +      +   F+G     ++ +      +++S  + G 
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 288 LPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 345
               F     S+ FL +S N L G +     +   L  L L +N  SG I D +     L
Sbjct: 624 TSPTF-DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682

Query: 346 LELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-----FNLSSL 392
             LDLS+N L G+IP     L+ L  +D+S N L G +P       F  +  
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  184 bits (468), Expect = 7e-52
 Identities = 85/396 (21%), Positives = 150/396 (37%), Gaps = 35/396 (8%)

Query: 51  CELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
            +  NL  LDLS NNL    +   + L  ++   L  N +       +  + ++ YL+L 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 111 DNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
            +  +   S  SL                KI+   F  L    L+ LN+ +  +  + S 
Sbjct: 305 RSFTKQSISLASLP---------------KIDDFSFQWLK--CLEHLNMEDNDIPGIKSN 347

Query: 171 LLQQL-DLRFIDLSHNKLQGI-FPSWLLQN--NTKLDTLYLLNNSLSGNFQLPSSK-HDL 225
           +   L +L+++ LS++        +    +  ++ L  L L  N +S       S    L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS 285
             LD+  N+   +L G   + L  +  + LS N +     +S + +  L+ L L      
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 286 G-ELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFS--------GK 334
             +          +L+ L LS+N++    + +      L  L L +N+ +        G 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLR 393
               L   + L  L+L +N         F +L  L+ +D+  N L     S F N  SL+
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 394 RLYMHMNAFNGSIPGALRRSL-SLTVLDLRDNEFSG 428
            L +  N            +  +LT LD+R N F  
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  182 bits (463), Expect = 3e-51
 Identities = 87/413 (21%), Positives = 149/413 (36%), Gaps = 31/413 (7%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
           L             L  LD+  N +          L  +KVL+L  N+L+       A  
Sbjct: 37  LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96

Query: 102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLR 160
            +L  L L  N+ + +   N       L    LS N L   +      L    L+ L L 
Sbjct: 97  TNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE--NLQELLLS 153

Query: 161 NCSLQALPSILLQQLD---LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG--- 214
           N  +QAL S  L       L+ ++LS N+++   P        +L  L+L N  L     
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLT 212

Query: 215 -NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKI-LPELLSLNLSENGFEGRIPSSMSEMK 272
               L  +   +  L +S+++ S         +    L  L+LS N        S + + 
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272

Query: 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-----------VFPNSTNL 321
           +LE   L  NN           G F++ +L+L  +  +  +            F     L
Sbjct: 273 QLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 322 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPP--WFGNL--SGLQFLDISEN 377
             L + +N   G   +  +   +L  L LSN+    +      F +L  S L  L++++N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 378 QLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPG-ALRRSLSLTVLDLRDNEFSG 428
           ++      +F  L  L  L + +N     + G   R   ++  + L  N++  
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  180 bits (458), Expect = 1e-50
 Identities = 91/415 (21%), Positives = 160/415 (38%), Gaps = 31/415 (7%)

Query: 41  PLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN 100
            L+   +       NL EL L  N++    +       ++  LDLS N L+         
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 101 IKSLEYLSLDDNNFEGL-FSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALN 158
           +++L+ L L +N  + L      +  +S L+  +LS N + +     F  +   +L  L 
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG--RLFGLF 201

Query: 159 LRNCSLQALP----SILLQQLDLRFIDLSHNKLQGIFPSWLLQ-NNTKLDTLYLLNNSLS 213
           L N  L         + L    +R + LS+++L     +  L    T L  L L  N+L+
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 214 G-NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRI-------- 264
                  +    L    + +N        ++   L  +  LNL  +  +  I        
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 265 -PSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS----- 318
              S   +K LE L++  N+  G +     +G  +L +LSLS++      +   +     
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 319 -TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISE 376
            + L  L L  N  S    D  S    L  LDL  N +  ++    +  L  +  + +S 
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 377 NQLCGSVPSSF-NLSSLRRLYMHMNAFNG--SIPGALRRSLSLTVLDLRDNEFSG 428
           N+      +SF  + SL+RL +   A     S P   +   +LT+LDL +N  + 
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  166 bits (423), Expect = 1e-45
 Identities = 82/392 (20%), Positives = 125/392 (31%), Gaps = 47/392 (11%)

Query: 55  NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 114
           +    D S   L        +N+T    L+L+ NQL     +       L  L +  N  
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 115 EGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQ 173
             L      +    L+V  L  N L ++  + F       L  L+L + S+Q + +    
Sbjct: 62  SKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCT--NLTELHLMSNSIQKIKNNPFV 118

Query: 174 QLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISH 232
           +   L  +DLSHN L              L  L L NN +                 +  
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQA---------------LKS 162

Query: 233 NKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF 292
            +               L  L LS N  +   P     + RL  L L++      L  + 
Sbjct: 163 EELD-------IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 293 LSGCF--SLSFLSLSDNHLQG--EVVFPN--STNLCWLYLNNNHFSGKIQDGLSKATSLL 346
                  S+  LSLS++ L       F     TNL  L L+ N+ +    D  +    L 
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 347 ELDLSNNMLYGQIPPWFGNLSGLQFLD---------ISENQLCGSVPSSF-NLSSLRRLY 396
              L  N +          L  +++L+         IS   L      SF  L  L  L 
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 397 MHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           M  N   G         ++L  L L ++  S 
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (322), Expect = 4e-32
 Identities = 72/326 (22%), Positives = 120/326 (36%), Gaps = 23/326 (7%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA----NIKSLEYLS 108
           LK L  L++  N++ G  S   + L ++K L LS++  +    +           L  L+
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVK-IETEEFPGLPEYQLKALNLRNCSLQA 166
           L  N    + S ++      L+V  L  N + + +  +E+ GL    +  + L       
Sbjct: 388 LTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE--NIFEIYLSYNKYLQ 444

Query: 167 LPSILLQQL-DLRFIDLSHNKLQGI-FPSWLLQNNTKLDTLYLLNNSLSG-NFQLPSSKH 223
           L       +  L+ + L    L+ +       Q    L  L L NN+++  N  +     
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 224 DLLRLDISHNKFS-------CQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276
            L  LD+ HN  +          P    K L  L  LNL  NGF+        ++  L+ 
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG---EVVFPNSTNLCWLYLNNNHFSG 333
           +DL  NN +  LP    +   SL  L+L  N +     +V  P   NL  L +  N F  
Sbjct: 565 IDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

Query: 334 KIQDGLSKATSLLELDLSNNMLYGQI 359
             +        + E   +   L    
Sbjct: 624 TCESIAWFVNWINETHTNIPELSSHY 649

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  181 bits (461), Expect = 2e-51
 Identities = 77/399 (19%), Positives = 137/399 (34%), Gaps = 16/399 (4%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
           +             L  L L+ N L       LS    +K L      ++      + N 
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLR 160
           K+LE L L  N+   +          KL+V     N++  +  E+   L +    +LNL 
Sbjct: 129 KTLESLYLGSNHISSI-KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 161 NCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNN-TKLDTLYLLNNSL---SGNF 216
              +  +          + ++    +   +    L  +    L      +      S   
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276
                +  +  +++  + F   +  N       L  L+L+       +PS +  +  L+ 
Sbjct: 248 FEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKK 305

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV---FPNSTNLCWLYLNNNH--F 331
           L LS+N F   L +   S   SL+ LS+  N  + E+      N  NL  L L+++    
Sbjct: 306 LVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 332 SGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF--NL 389
           S      L   + L  L+LS N         F     L+ LD++  +L      S   NL
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 390 SSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
             L+ L +  +  + S         +L  L+L+ N F  
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  171 bits (436), Expect = 8e-48
 Identities = 87/387 (22%), Positives = 143/387 (36%), Gaps = 18/387 (4%)

Query: 55  NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN--IKSLEYLSLDDN 112
             + L+L+ N++   + P   +    + L+    Q    +   + N  I+SL   + +D 
Sbjct: 180 TNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 113 NFEGL--FSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
           + E +    F  L   S ++   L  +    I +  F       L+ L+L    L  LPS
Sbjct: 239 DDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFS--GLQELDLTATHLSELPS 295

Query: 170 ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH--DLLR 227
            L+    L+ + LS NK + +       N   L  L +  N+          ++  +L  
Sbjct: 296 GLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 228 LDISHNKFSC-QLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG 286
           LD+SH+            + L  L SLNLS N        +  E  +LE LDL+      
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 287 ELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQ---DGLSK 341
           +  +        L  L+LS + L    E +F     L  L L  NHF        + L  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNA 401
              L  L LS   L       F +L  +  +D+S N+L  S   + +      L +  N 
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNH 534

Query: 402 FNGSIPGALRRSLSLTVLDLRDNEFSG 428
            +  +P  L        ++LR N    
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  168 bits (427), Expect = 2e-46
 Identities = 71/387 (18%), Positives = 126/387 (32%), Gaps = 15/387 (3%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
             +   L+ S N L    +   S L ++  LDL+  Q+    +    +   L+ L L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
               +    +L     L+        +  I+           L++L L +  + ++    
Sbjct: 92  PLIFMAE-TALSGPKALKHLFFIQTGISSIDFIPLHNQK--TLESLYLGSNHISSIKLPK 148

Query: 172 LQQL-DLRFIDLSHNKLQGIFPSWLLQ-NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLD 229
                 L+ +D  +N +  +    +         +L L  N ++G             L+
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 230 ISHNKFSCQ-LPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKR--LESLDLSSNNFSG 286
               +       G     +  L      +   E   P+    +    +ES++L  + F  
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 287 ELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 345
                F      L  L L+  HL          + L  L L+ N F    Q   S   SL
Sbjct: 269 ISSNTF-HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 346 LELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCGSVPSSF---NLSSLRRLYMHMNA 401
             L +  N    ++      NL  L+ LD+S + +  S   +    NLS L+ L +  N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 402 FNGSIPGALRRSLSLTVLDLRDNEFSG 428
                  A +    L +LDL       
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKV 414

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  140 bits (356), Expect = 8e-37
 Identities = 72/361 (19%), Positives = 118/361 (32%), Gaps = 24/361 (6%)

Query: 81  KVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSL 138
           K  +  +  L      +   +  S E L    N    +    +      L    L+   +
Sbjct: 15  KTYNCENLGLN----EIPGTLPNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQI 69

Query: 139 VKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQ 197
             I  + F      +L  L L    L  +    L     L+ +      +  I     L 
Sbjct: 70  YWIHEDTFQSQH--RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI-PLH 126

Query: 198 NNTKLDTLYLLNNSLSG-NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPEL--LSLN 254
           N   L++LYL +N +S            L  LD  +N        +M   L +   LSLN
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLSLN 185

Query: 255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF-LSGCFSLSFLSLSDNHL---- 309
           L+ N   G I     +    +SL+         + +    S   SL   +  D       
Sbjct: 186 LNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 310 QGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGL 369
                     ++  + L  ++F     +     + L ELDL+   L  ++P     LS L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTL 303

Query: 370 QFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSI-PGALRRSLSLTVLDLRDNEFS 427
           + L +S N+       S  N  SL  L +  N     +  G L    +L  LDL  ++  
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 428 G 428
            
Sbjct: 364 T 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 9e-20
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 7/181 (3%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIAN 100
                     E   L  LDL+   L    +     NL  +KVL+LS + L  + + +   
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 101 IKSLEYLSLDDNNFEGL--FSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKAL 157
           + +L++L+L  N+F        NSL+   +L++  LS   L  I+   F  L    +  +
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK--MMNHV 505

Query: 158 NLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ 217
           +L +  L +     L  L   +++L+ N +  I PS LL   ++  T+ L  N L     
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPS-LLPILSQQRTINLRQNPLDCTCS 564

Query: 218 L 218
            
Sbjct: 565 N 565

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  179 bits (455), Expect = 2e-50
 Identities = 99/399 (24%), Positives = 147/399 (36%), Gaps = 31/399 (7%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKV----LDLSSNQLTGNLQSVIANIKSLE 105
              L NL  LDLS N +       L  L  + +    LDLS N +          I  L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203

Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-------NSLVKIETEEFPGLPEYQLKALN 158
            L+L +N          ++  + L+V +L         +L K +     GL    ++   
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 159 LR--NCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF 216
           L   +  L  +  +     ++    L    ++ +        N     L L+N       
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFP 320

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENG--FEGRIPSSMSEMKRL 274
            L      L RL  + NK            LP L  L+LS NG  F+G    S      L
Sbjct: 321 TLKLKS--LKRLTFTSNKGGNAFSEVD---LPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 275 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHF 331
           + LDLS N     +   FL G   L  L    ++L+      VF +  NL +L +++ H 
Sbjct: 376 KYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 332 SGKIQDGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPSSF-NL 389
                   +  +SL  L ++ N       P  F  L  L FLD+S+ QL    P++F +L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 390 SSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           SSL+ L M  N F        +   SL VLD   N    
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  168 bits (428), Expect = 1e-46
 Identities = 81/407 (19%), Positives = 134/407 (32%), Gaps = 31/407 (7%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
           L    +        L  LDLS+  +         +L+H+  L L+ N +        + +
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIE-TEEFPGLPEYQLKALNL 159
            SL+ L   + N   L +   + +   L+   ++ N +   +  E F  L    L+ L+L
Sbjct: 100 SSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--NLEHLDL 156

Query: 160 RNCSLQALPSILLQQL-----DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG 214
            +  +Q++    L+ L         +DLS N +  I P        +L  L L NN  S 
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSL 214

Query: 215 NFQLPSSKH----DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSEN------GFEGRI 264
           N      +     ++ RL +   +    L       L  L +L + E        +   I
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 265 PSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWL 324
               + +  + S  L S            S  F    L L +        FP        
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQ---FPTLKLKSLK 328

Query: 325 YLNNNHFSGKIQDGLSKATSLLELDLSNNMLY--GQIPPWFGNLSGLQFLDISENQLCGS 382
            L      G          SL  LDLS N L   G         + L++LD+S N +   
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

Query: 383 VPSSFNLSSLRRLYMHMNAFNGSIPGALRRSL-SLTVLDLRDNEFSG 428
             +   L  L  L    +        ++  SL +L  LD+       
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (398), Expect = 1e-42
 Identities = 75/414 (18%), Positives = 147/414 (35%), Gaps = 42/414 (10%)

Query: 45  FVNTGICELKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGN---LQSVIAN 100
           F+  G  +   L +L L  N    ++   C+  L  ++V  L   +        +   + 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 101 IKSLEYLSLDDNNFEGLFSF-----NSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQL 154
           ++ L  L++++     L  +     +     + +  F L   ++ +++   +     +  
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY----NFGW 306

Query: 155 KALNLRNCSLQALPSILLQQLD--------------------LRFIDLSHNKLQGI-FPS 193
           + L L NC     P++ L+ L                     L F+DLS N L      S
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 194 WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSL 253
                 T L  L L  N +            L  LD  H+        ++   L  L+ L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 254 NLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE- 312
           ++S            + +  LE L ++ N+F         +   +L+FL LS   L+   
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 313 -VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNL-SGLQ 370
              F + ++L  L +++N+F            SL  LD S N +         +  S L 
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546

Query: 371 FLDISENQL---CGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDL 421
           FL++++N     C        +   R+L + +     + P    + + +  L++
Sbjct: 547 FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK-QGMPVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  141 bits (358), Expect = 4e-37
 Identities = 81/399 (20%), Positives = 133/399 (33%), Gaps = 35/399 (8%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           +  + N+      + N Y  +   L      K LDLS N L         +   L+ L L
Sbjct: 4   VEVVPNIT-YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALP 168
                + +    + ++ S L    L+ N +  +    F GL    L+ L     +L +L 
Sbjct: 60  SRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLS--SLQKLVAVETNLASLE 116

Query: 169 SILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN-----FQLPSSK 222
           +  +  L  L+ ++++HN +Q         N T L+ L L +N +          L    
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPS-SMSEMKRLESLDLSS 281
              L LD+S N  +   PG   +I   L  L L  N     +    +  +  LE   L  
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 282 NNFSG-----ELPRQFLSGCFSLSFLSLSDNHLQGEV-----VFPNSTNLCWLYLNNNHF 331
             F       +  +  L G  +L+       +L   +     +F   TN+    L +   
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 332 SGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSS 391
                   S       L+L N            +L  L F          +  S  +L S
Sbjct: 295 ERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG----NAFSEVDLPS 348

Query: 392 LRRLYMHMNAFN--GSIPGALRRSLSLTVLDLRDNEFSG 428
           L  L +  N  +  G    +   + SL  LDL  N    
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  169 bits (430), Expect = 2e-49
 Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 11/256 (4%)

Query: 180 IDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD---LLRLDISH-NKF 235
            D  +    G+          +++ L L   +L   + +PSS  +   L  L I   N  
Sbjct: 31  TDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 236 SCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSG 295
              +P  + K L +L  L ++     G IP  +S++K L +LD S N  SG LP   +S 
Sbjct: 90  VGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISS 147

Query: 296 CFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN 352
             +L  ++   N + G +       S     + ++ N  +GKI    +   +L  +DLS 
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206

Query: 353 NMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR 412
           NML G     FG+    Q + +++N L   +       +L  L +  N   G++P  L +
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 413 SLSLTVLDLRDNEFSG 428
              L  L++  N   G
Sbjct: 267 LKFLHSLNVSFNNLCG 282

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  155 bits (395), Expect = 3e-44
 Identities = 75/265 (28%), Positives = 120/265 (45%), Gaps = 17/265 (6%)

Query: 153 QLKALNLRNCSLQ---ALPSILLQQLDLRFIDLSH-NKLQGIFPSWLLQNNTKLDTLYLL 208
           ++  L+L   +L     +PS L     L F+ +   N L G  P  +    T+L  LY+ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYIT 109

Query: 209 NNSLSGNFQLPSS---KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIP 265
           + ++SG   +P        L+ LD S+N  S  LP ++   LP L+ +    N   G IP
Sbjct: 110 HTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIP 166

Query: 266 SSMSEMKRL-ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLC 322
            S     +L  S+ +S N  +G++P  F     +L+F+ LS N L+G+   +F +  N  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 323 WLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGS 382
            ++L  N  +  +   +  + +L  LDL NN +YG +P     L  L  L++S N LCG 
Sbjct: 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 383 VPSSFNLSSLRRLYMHMNAFNGSIP 407
           +P   NL          N      P
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (327), Expect = 2e-34
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 7/183 (3%)

Query: 252 SLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELP-RQFLSGCFSLSFLSLSD-NHL 309
           + +     + G +  + ++  R+ +LDLS  N     P    L+    L+FL +   N+L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 310 QGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLS 367
            G +       T L +LY+ + + SG I D LS+  +L+ LD S N L G +PP   +L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 368 GLQFLDISENQLCGSVPSSF-NLSSLRR-LYMHMNAFNGSIPGALRRSLSLTVLDLRDNE 425
            L  +    N++ G++P S+ + S L   + +  N   G IP      L+L  +DL  N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNM 208

Query: 426 FSG 428
             G
Sbjct: 209 LEG 211

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  118 bits (297), Expect = 2e-30
 Identities = 59/290 (20%), Positives = 93/290 (32%), Gaps = 82/290 (28%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
             I +L  L  L ++  N+ G +   LS +  +  LD S N L+G L   I+++ +L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
           + D N   G    +S  + SKL                                      
Sbjct: 155 TFDGNRISGAIP-DSYGSFSKLFTS----------------------------------- 178

Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 227
                       + +S N+L G  P                      N        +L  
Sbjct: 179 ------------MTISRNRLTGKIPPTF------------------ANL-------NLAF 201

Query: 228 LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGE 287
           +D+S N          G        ++L++N     +   +   K L  LDL +N   G 
Sbjct: 202 VDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT 259

Query: 288 LPRQFLSGCFSLSFLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSG 333
           LP Q L+    L  L++S N+L GE+               Y NN    G
Sbjct: 260 LP-QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA--YANNKCLCG 306

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  170 bits (432), Expect = 2e-46
 Identities = 59/399 (14%), Positives = 124/399 (31%), Gaps = 28/399 (7%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           +     +  L L+     G +   +  LT +KVL   ++  T + +       + +    
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI--ETEEFPGLPEYQLKALNLRNCS--LQ 165
             +     +    L    +L +  L    +    E +         LK   + N +  + 
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
            +   + +   L+ I  +++         +   +   D      N       L      L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYD-NIAVDWEDANSDYAKQYENEELSWSNLKD----L 493

Query: 226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEG---------RIPSSMSEMKRLES 276
             +++ +     QLP  +   LPEL SLN++ N             R+        +++ 
Sbjct: 494 TDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ 336
             +  NN         L     L  L    N ++    F  +  L  L L+ N      +
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 337 DGLSKATSLLELDLSNNMLYGQIPPWF--GNLSGLQFLDISENQL------CGSVPSSFN 388
           D  +    +  L  S+N L   IP  F   ++  +  +D S N++             + 
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 389 LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
             +   + +  N               ++ + L +N  +
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  159 bits (403), Expect = 1e-42
 Identities = 69/405 (17%), Positives = 130/405 (32%), Gaps = 56/405 (13%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
           T      +  + +      Y +     SNL  +  ++L +      L   + ++  L+ L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
           ++  N         +                               ++   +   +L+  
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPK-----------------IQIFYMGYNNLEEF 563

Query: 168 P-SILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSS---- 221
           P S  LQ++  L  +D  HNK++ +  +     N KL  L L  N +    ++P      
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHL-EA--FGTNVKLTDLKLDYNQIE---EIPEDFCAF 617

Query: 222 KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPS-----SMSEMKRLES 276
              +  L  SHNK          K +  + S++ S N       +        +     +
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG---------EVVFPNSTNLCWLYLN 327
           + LS N      P +  +    +S + LS+N +           +  + N+  L  + L 
Sbjct: 678 VTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 328 NNHFSGKIQD-GLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISE------NQLC 380
            N  +    D   +    L  +D+S N      P    N S L+   I        N++ 
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795

Query: 381 GSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
              P+      SL +L +  N               L +LD+ DN
Sbjct: 796 RQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP---QLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  142 bits (359), Expect = 7e-37
 Identities = 61/437 (13%), Positives = 125/437 (28%), Gaps = 70/437 (16%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPC-------------------------LSNLTHIKVLD 84
           I +L  L  L    ++                                 L     + + D
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 85  LSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSF-----NSLKNHSKLQVFKLS-NSL 138
           L  + +  N +  +  IK    +SL D     L +       +++  +KLQ+   + +  
Sbjct: 403 LLQDAINRNPE--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 139 VKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQN 198
                            A +      +          DL  ++L +       P + L +
Sbjct: 461 TYDNIAVD------WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYD 513

Query: 199 NTKLDTLYLLNNSLSGNFQLPSSKHD----------LLRLDISHNKFSCQLPGNMGKILP 248
             +L +L +  N      QL +              +    + +N           + + 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 249 ELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNH 308
           +L  L+   N        +     +L  L L  N    E+P  F +    +  L  S N 
Sbjct: 574 KLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630

Query: 309 LQG---EVVFPNSTNLCWLYLNNNHFSGKIQD-----GLSKATSLLELDLSNNMLYGQIP 360
           L+         +   +  +  + N    + ++        K  +   + LS N +     
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

Query: 361 PWFGNLSGLQFLDISENQL-------CGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRR 412
             F   S +  + +S N +             ++ N   L  + +  N            
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750

Query: 413 SL-SLTVLDLRDNEFSG 428
           +L  L+ +D+  N FS 
Sbjct: 751 TLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (314), Expect = 5e-31
 Identities = 55/359 (15%), Positives = 115/359 (32%), Gaps = 66/359 (18%)

Query: 46  VNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
            +  + ++  L  LD   N +  HL         +  L L  NQ+    +   A    +E
Sbjct: 565 ASASLQKMVKLGLLDCVHNKV-RHL-EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622

Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSL 164
            L    N  + + +  + K+   +     S N +          + +Y+           
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG---------- 672

Query: 165 QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD 224
                     ++   + LS+N++Q   P+ L    + + T+ L NN ++    +P +   
Sbjct: 673 ----------INASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMT---SIPENSLK 718

Query: 225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM--SEMKRLESLDLSSN 282
               +  +                 L +++L  N     +      + +  L ++D+S N
Sbjct: 719 PKDGNYKN--------------TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYN 763

Query: 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA 342
            FS   P Q L+    L    +                        N    +   G++  
Sbjct: 764 CFS-SFPTQPLN-SSQLKAFGIRHQ----------------RDAEGNRILRQWPTGITTC 805

Query: 343 TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL-CGSVPSSFNLSSLRRLYMHMN 400
            SL++L + +N +  ++         L  LDI++N      V S           +  +
Sbjct: 806 PSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (309), Expect = 2e-30
 Identities = 48/366 (13%), Positives = 103/366 (28%), Gaps = 31/366 (8%)

Query: 83  LDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKI 141
            +   +         + N   +  LSL     +G    +++   ++L+V     +S    
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVS 362

Query: 142 ETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTK 201
                       +         +      L     L   DL  + +        ++ +++
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 202 LDTLYLLNNSLSGNFQ-LPSSKHDLLRL---DISHNKFSCQLPGNMGKILPELLSLNLSE 257
           +        +L+     +  +   L +L     +++ F+            +    N   
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV------DWEDANSDY 476

Query: 258 NGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---- 313
                    S S +K L  ++L +     +LP         L  L+++ N          
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKA 535

Query: 314 -------VFPNSTNLCWLYLNNNHFSG-KIQDGLSKATSLLELDLSNNMLYGQIPPWFGN 365
                         +   Y+  N+         L K   L  LD  +N +  +    FG 
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGT 593

Query: 366 LSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSL-SLTVLDLR 422
              L  L +  NQ+   +P  F      +  L    N           +S+  +  +D  
Sbjct: 594 NVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652

Query: 423 DNEFSG 428
            N+   
Sbjct: 653 YNKIGS 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 3e-24
 Identities = 47/284 (16%), Positives = 83/284 (29%), Gaps = 33/284 (11%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV-IANIKSLEYLS 108
                 L +L L  N +        +    ++ L  S N+L          ++  +  + 
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650

Query: 109 LDDNNFEGL----FSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCS 163
              N                         LS N + K  TE F       +  + L N  
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS--PISTIILSNNL 708

Query: 164 LQALPSILLQQLD--------LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN 215
           + ++P   L+  D        L  IDL  NKL  +   +       L  + +  N  S  
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS- 767

Query: 216 FQLPSSKHDLLRL---------DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPS 266
              P+   +  +L         D   N+   Q P  +    P L+ L +  N     +  
Sbjct: 768 --FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT-CPSLIQLQIGSNDIRK-VDE 823

Query: 267 SMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 310
            +    +L  LD++ N     +    +          L  +  Q
Sbjct: 824 KL--TPQLYILDIADNPNI-SIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 32/235 (13%), Positives = 64/235 (27%), Gaps = 44/235 (18%)

Query: 39  GVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT------- 91
                +  +    +  N   + LS N +    +   +  + I  + LS+N +T       
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 92  GNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPE 151
                   N   L  + L  N    L           L                      
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN-------------------- 757

Query: 152 YQLKALNLRNCSLQALPSIL-----LQQLDLRF-IDLSHNKLQGIFPSWLLQNNTKLDTL 205
                +++      + P+       L+   +R   D   N++   +P+  +     L  L
Sbjct: 758 -----MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQL 811

Query: 206 YLLNNSLSGNFQLPSSK-HDLLRLDISHNKF-SCQLPGNMGKILPELLSLNLSEN 258
            + +N +     +       L  LDI+ N   S  +      I   +  L   + 
Sbjct: 812 QIGSNDIRK---VDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 32/298 (10%), Positives = 82/298 (27%), Gaps = 46/298 (15%)

Query: 173 QQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISH 232
              +L+ + +++ +      +    N+  +D      +S      LP+  + ++      
Sbjct: 169 VTTELKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCDSA---VWLPAGTYQVVAYTTYS 225

Query: 233 NKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKR-----------LESLDLSS 281
                +       +  E  ++  ++   +  +P  + E               E+LD  +
Sbjct: 226 QSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKN 285

Query: 282 NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSK 341
             +        +          L     Q  V   N+  +  L L      G++ D + +
Sbjct: 286 WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQ 345

Query: 342 ATSLLELDLSNNMLYGQIPPWF-------------------------GNLSGLQFLDISE 376
            T L  L    +        +                               L   D+ +
Sbjct: 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 377 NQLCGSVPSSFNLSSLRRLYMHMNAFNG------SIPGALRRSLSLTVLDLRDNEFSG 428
           + +    P    +    R+ +              I  A++R   L ++   ++ F+ 
Sbjct: 406 DAI-NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 11/110 (10%)

Query: 48  TGICELKNLVELDLSK------NNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
           T       L    +        N +       ++    +  L + SN +      V   +
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR----KVDEKL 825

Query: 102 -KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLP 150
              L  L + DN    +   +            L +    I   +  G+ 
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  167 bits (424), Expect = 5e-46
 Identities = 59/409 (14%), Positives = 123/409 (30%), Gaps = 38/409 (9%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
                 +     +      Y        NL  +  +++ +      L + +  +  ++ +
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 108 SLDDNNFEGLFS-------FNSLKNHSKLQVFKLS-NSLVKIETE-EFPGLPEYQLKALN 158
           ++  N                      K+Q+  +  N+L     E     +   +L  L 
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK--KLGMLE 336

Query: 159 LRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG--NF 216
                L+        ++ L  ++L++N++  I P+       +++ L   +N L    N 
Sbjct: 337 CLYNQLEGKLPAFGSEIKLASLNLAYNQITEI-PANFCGFTEQVENLSFAHNKLKYIPNI 395

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPE------LLSLNLSENGFEGRIPSSMSE 270
               S   +  +D S+N+       N   + P       + S+NLS N          S 
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 271 MKRLESLDLSSNNFSGELPRQF------LSGCFSLSFLSLSDNHLQG---EVVFPNSTNL 321
              L S++L  N  +                 + L+ + L  N L     +        L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 322 CWLYLNNNHFSGKIQDGLSKATSLLELDLSN------NMLYGQIPPWFGNLSGLQFLDIS 375
             + L+ N FS         +++L    + N      N    + P        L  L I 
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 376 ENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
            N +   V       ++  L +  N         +   +   +  L  +
Sbjct: 575 SNDI-RKVNEKI-TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  164 bits (418), Expect = 3e-45
 Identities = 56/401 (13%), Positives = 134/401 (33%), Gaps = 32/401 (7%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN----LQSVIANIKSLEYL 107
               +  L L      G +   +  LT ++VL L S+    N        I+   S E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 108 SLDDNNFEGLF-SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQA 166
                +++  F  ++  ++ S L    +++   +   ++   +   +   +   + ++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL-KDTQIGQLSNNITF 197

Query: 167 LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
           +   +++   LR   + ++             N   +              L      L 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAW-ENENSEYAQQYKTEDLKWDNLKD----LT 252

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGF--------EGRIPSSMSEMKRLESLD 278
            +++ +     +LP  +   LPE+  +N++ N          + +  +     ++++ + 
Sbjct: 253 DVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 279 LSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQD 337
           +  NN         L     L  L    N L+G++  F +   L  L L  N  +    +
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 338 GLSKATSLLELDLSNNMLYGQIPPWF--GNLSGLQFLDISENQLCGSVPSSF-------- 387
                  +  L  ++N L   IP  F   ++S +  +D S N++      +F        
Sbjct: 372 FCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 388 NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
              ++  + +  N  +            L+ ++L  N  + 
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  161 bits (409), Expect = 7e-44
 Identities = 70/426 (16%), Positives = 148/426 (34%), Gaps = 47/426 (11%)

Query: 38  NGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV 97
           N  P    +           ++    NN+   +S  +  LT ++   + ++         
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICE 225

Query: 98  IANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKAL 157
               ++ EY             +++LK+ + ++V   +   +         LP  +++ +
Sbjct: 226 AWENENSEYAQQYKTEDL---KWDNLKDLTDVEV--YNCPNLTKLPTFLKALP--EMQLI 278

Query: 158 NLRNCSLQALPSI---------LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLL 208
           N+      +   +               ++ I + +N L+       LQ   KL  L  L
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 209 NNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPS-- 266
            N L G      S+  L  L++++N+ + ++P N      ++ +L+ + N  +  IP+  
Sbjct: 339 YNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIF 396

Query: 267 SMSEMKRLESLDLSSNNFSGELPRQF------LSGCFSLSFLSLSDNHLQGEV--VFPNS 318
               +  + ++D S N       + F           ++S ++LS+N +      +F   
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 319 TNLCWLYLNNNHFSG-------KIQDGLSKATSLLELDLSNNMLYGQIPP--WFGNLSGL 369
           + L  + L  N  +           +       L  +DL  N L  ++        L  L
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYL 515

Query: 370 QFLDISENQLCGSVPSS-FNLSSLRRLYMHM------NAFNGSIPGALRRSLSLTVLDLR 422
             +D+S N      P+   N S+L+   +        N      P  +    SLT L + 
Sbjct: 516 VGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 423 DNEFSG 428
            N+   
Sbjct: 575 SNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  155 bits (394), Expect = 7e-42
 Identities = 51/380 (13%), Positives = 126/380 (33%), Gaps = 34/380 (8%)

Query: 74  LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEG---LFSFNSLKNHSKLQ 130
           L++   +  L L     +G +   I  +  LE L+L  +  +    LF    +  +   +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 131 VFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQA-LPSILLQQLDLRFIDLSHNKLQ 188
             +       K   +  P      L    + +   Q  +       L    I    N + 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 189 GIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILP 248
            +  +  +   TKL   Y+ N+         + +++       + +            L 
Sbjct: 197 FVSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENS----EYAQQYKTEDLKWDN-LK 249

Query: 249 ELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG--ELPRQF-----LSGCFSLSF 301
           +L  + +       ++P+ +  +  ++ ++++ N      +L   +           +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 302 LSLSDNHLQG---EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ 358
           + +  N+L+    E        L  L    N   GK+         L  L+L+ N +   
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEI 368

Query: 359 IPPWFGNLSGLQFLDISENQLCGSVPSSF---NLSSLRRLYMHMNAFNG-------SIPG 408
              + G    ++ L  + N+L   +P+ F   ++S +  +    N            +  
Sbjct: 369 PANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 409 ALRRSLSLTVLDLRDNEFSG 428
              + ++++ ++L +N+ S 
Sbjct: 428 TPFKGINVSSINLSNNQISK 447

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  149 bits (377), Expect = 1e-39
 Identities = 64/404 (15%), Positives = 135/404 (33%), Gaps = 43/404 (10%)

Query: 51  CELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
            +  +L++  ++ +     +            +   SN +T  +   +  +  L    + 
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214

Query: 111 DNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCS-LQALPS 169
           ++ F           +   +  +   +       ++  L    L  + + NC  L  LP+
Sbjct: 215 NSPFVAENIC-EAWENENSEYAQQYKTE----DLKWDNLK--DLTDVEVYNCPNLTKLPT 267

Query: 170 ILLQQLDLRFIDLSHNKLQGIFPSWL-------LQNNTKLDTLYLLNNSLSGNFQLPSSK 222
            L    +++ I+++ N+                     K+  +Y+  N+L   F + +S 
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326

Query: 223 ---HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL 279
                L  L+  +N+         G    +L SLNL+ N       +     +++E+L  
Sbjct: 327 QKMKKLGMLECLYNQLE-GKLPAFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 280 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFP---------NSTNLCWLYLNNNH 330
           + N                +S +  S N +                   N+  + L+NN 
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 331 FSGKIQDGLSKATSLLELDLSNNML-------YGQIPPWFGNLSGLQFLDISENQLCGSV 383
            S   ++  S  + L  ++L  NML              F N   L  +D+  N+L   +
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKL 503

Query: 384 PSSF---NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
              F    L  L  + +  N+F+   P     S +L    +R+ 
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  146 bits (370), Expect = 1e-38
 Identities = 57/416 (13%), Positives = 125/416 (30%), Gaps = 51/416 (12%)

Query: 50  ICELKNLVELDLSKNNLYG----HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA--NIKS 103
           I +L  L  L L  +             +S     +                    +   
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 104 LEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCS 163
           L    ++ +  +     +S       Q+ +LSN++  +  +    L   +L+   + N  
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-KAVMRLT--KLRQFYMGNSP 217

Query: 164 LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-----QL 218
             A       +      +  + +           N   L  + + N             L
Sbjct: 218 FVAENICEAWEN----ENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 219 PSSKHDLLRLDISHNKFSC--QLPGNMGKI-----LPELLSLNLSENGF-EGRIPSSMSE 270
           P     +  ++++ N+     QL  +   +       ++  + +  N      + +S+ +
Sbjct: 273 PE----MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 271 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNN 328
           MK+L  L+   N   G+LP         L+ L+L+ N +          +  +  L   +
Sbjct: 329 MKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 329 NHFSG-KIQDGLSKATSLLELDLSNNMLYG-------QIPPWFGNLSGLQFLDISENQLC 380
           N              + +  +D S N +          + P       +  +++S NQ+ 
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 381 GSVPSSF-NLSSLRRLYMHMNAFNG-------SIPGALRRSLSLTVLDLRDNEFSG 428
                 F   S L  + +  N                 + +  LT +DLR N+ + 
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  128 bits (323), Expect = 2e-32
 Identities = 61/347 (17%), Positives = 116/347 (33%), Gaps = 62/347 (17%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
           T + ++K L  L+   N L G L P   +   +  L+L+ NQ+T    +     + +E L
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQA 166
           S   N  + + +    K+ S +     S N +  ++ + F  L     K +N+       
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS------ 436

Query: 167 LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSK---- 222
                        I+LS+N++    P  L    + L ++ L+ N L+   +         
Sbjct: 437 ------------SINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 223 ----HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESL- 277
               + L  +D+  NK +          LP L+ ++LS N F    P+       L+   
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542

Query: 278 -----DLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFS 332
                D   N    E P    + C SL+ L +  N ++                      
Sbjct: 543 IRNQRDAQGNRTLREWPEGI-TLCPSLTQLQIGSNDIRK---VNEKI------------- 585

Query: 333 GKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379
                      ++  LD+ +N        +           +  ++ 
Sbjct: 586 ---------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 35/282 (12%), Positives = 85/282 (30%), Gaps = 45/282 (15%)

Query: 187 LQGIFPSWLLQNNTKLDTLYLLNNSLSGN-----FQLPSSKHDLLRLDISHNKFSCQLPG 241
           + G  P   L +N ++  L L     SG       QL      L  L +  +        
Sbjct: 68  MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE----LEVLALGSHGEKVNERL 123

Query: 242 NMGKILPELLSL---NLSENGFEGRIPSSMS--EMKRLESLDLSSNNFSGELPRQFLSGC 296
              K +   +S          ++          +   L    ++S+     + +      
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI-T 182

Query: 297 FSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQ------------------- 336
              + +    N++          T L   Y+ N+ F  +                     
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242

Query: 337 DGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL---------CGSVPSSF 387
                   L ++++ N     ++P +   L  +Q ++++ N+            ++  + 
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 388 NLSSLRRLYMHMNAF-NGSIPGALRRSLSLTVLDLRDNEFSG 428
               ++ +Y+  N      +  +L++   L +L+   N+  G
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 16/154 (10%)

Query: 46  VNTGICELKNLVELDLSKNNLYG-HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSL 104
            N        L  +DL  N L         + L ++  +DLS N  +    +   N  +L
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538

Query: 105 EYLSL------DDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKAL 157
           +   +        N     +    +     L   ++  N + K+  +  P      +  L
Sbjct: 539 KGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSNDIRKVNEKITP-----NISVL 592

Query: 158 NLRNCSLQALP-SILLQQLDLRFIDLSHNKLQGI 190
           ++++    ++  S +   ++     L ++K Q I
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (420), Expect = 1e-45
 Identities = 73/392 (18%), Positives = 123/392 (31%), Gaps = 24/392 (6%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L +L  L L+ N +        S LT ++ L     +L       I  + +L+ L++  N
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPE--YQLKALNLRNCSLQALPS 169
                       N + L    LS N +  I   +   L E      +L++    +  +  
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 170 ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR-- 227
              Q + L  + L  N          LQN   L    L+         L   +  ++   
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 228 -------LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS 280
                    +++              L  + +++L+    +      + +  + +SL + 
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHC-LANVSAMSLAGVSIKY--LEDVPKHFKWQSLSII 315

Query: 281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLS 340
                 + P   L     L  L+L+ N            +L +L L+ N  S       S
Sbjct: 316 RCQLK-QFPTLDLP---FLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 341 --KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLY 396
                SL  LDLS N     +   F  L  LQ LD   + L      S   +L  L  L 
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 397 MHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           +          G      SL  L +  N F  
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (420), Expect = 1e-45
 Identities = 77/388 (19%), Positives = 137/388 (35%), Gaps = 24/388 (6%)

Query: 54  KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQS-VIANIKSLEYLSLDDN 112
           +  + LD+S N +   +         +  L L  N  + N+    + N+  L    L   
Sbjct: 181 QVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 113 NFEGLFS--------FNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL 164
            F+   +           L + +  +      +    +  +F  L    + A++L   S+
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA--NVSAMSLAGVSI 297

Query: 165 QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD 224
           + L   + +    + + +   +L+      L      L +L L  N  S +F+  +    
Sbjct: 298 KYLED-VPKHFKWQSLSIIRCQLKQFPTLDL----PFLKSLTLTMNKGSISFKKVALPS- 351

Query: 225 LLRLDISHNKFSCQLPGN-MGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN 283
           L  LD+S N  S     +        L  L+LS NG    + ++   ++ L+ LD   + 
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410

Query: 284 FSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDG-LS 340
                          L +L +S  + +   + +F   T+L  L +  N F         +
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHM 399
             T+L  LDLS   L       F  L  LQ L++S N L     S +  L SL  L    
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 400 NAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           N    S         SL   +L +N  +
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (400), Expect = 9e-43
 Identities = 87/398 (21%), Positives = 134/398 (33%), Gaps = 30/398 (7%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIK----VLDLSSNQLTGNLQSVIANIKSLE 105
              L NLV +DLS N +       L  L         LD+S N +          I  L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLH 207

Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-------NSLVKIETEEFPGLPEYQLKALN 158
            L+L  N          L+N + L V +L         +L   E     GL +  +    
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 159 LRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ 217
           L   +  +   +    L ++  + L+   ++ +     +  + K  +L ++   L     
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQLKQFPT 324

Query: 218 LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK--RLE 275
           L      L  L ++ NK S          LP L  L+LS N        S S++    L 
Sbjct: 325 LDLPF--LKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG---EVVFPNSTNLCWLYLNNNHFS 332
            LDLS N     +      G   L  L    + L+       F +   L +L ++  +  
Sbjct: 380 HLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 333 GKIQDGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPSSF-NLS 390
                     TSL  L ++ N          F N + L FLD+S+ QL       F  L 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 391 SLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
            L+ L M  N           +  SL+ LD   N    
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  150 bits (380), Expect = 4e-40
 Identities = 79/391 (20%), Positives = 131/391 (33%), Gaps = 27/391 (6%)

Query: 55  NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 114
           +   +DLS N L    S   SN + ++ LDLS  ++          +  L  L L  N  
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 115 EGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQ--ALPSIL 171
           +   S  S    + L+        L  +E+     L    LK LN+ +  +    LP+  
Sbjct: 93  QSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLI--TLKKLNVAHNFIHSCKLPAYF 149

Query: 172 LQQLDLRFIDLSHNKLQGIFP---SWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL 228
               +L  +DLS+N +Q I      +L +N     +L +  N +            L  L
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209

Query: 229 DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK--------RLESLDLS 280
            +  N  S  +     + L  L    L    F+      + E           ++   L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLS 340
             N   +   +F     ++S +SL+   ++     P       L +            L 
Sbjct: 270 YTNDFSDDIVKF-HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

Query: 341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF---NLSSLRRLYM 397
               L  L L+ N     I      L  L +LD+S N L  S   S+     +SLR L +
Sbjct: 329 ---FLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 398 HMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
             N     +         L  LD + +    
Sbjct: 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKR 413

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  144 bits (364), Expect = 6e-38
 Identities = 61/349 (17%), Positives = 113/349 (32%), Gaps = 19/349 (5%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYGHLS------PCLSNLTHIKV--LDLSSNQLTGN 93
            +  + T +  L  L    L         +        +  L  + +    L+      +
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 94  LQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ 153
                  + ++  +SL   +   +     +  H K Q   +     +++      LP   
Sbjct: 277 DIVKFHCLANVSAMSLAGVS---IKYLEDVPKHFKWQSLSIIRC--QLKQFPTLDLP--F 329

Query: 154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFP-SWLLQNNTKLDTLYLLNNSL 212
           LK+L L           +     L ++DLS N L      S+       L  L L  N  
Sbjct: 330 LKSLTLTMNKGSISFKKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK 272
                      +L  LD  H+        +    L +LL L++S    +         + 
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNH 330
            L +L ++ N+F         +   +L+FL LS   L+     VF     L  L +++N+
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 331 FSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379
                    ++  SL  LD S N +             L F +++ N +
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.5 bits (194), Expect = 9e-16
 Identities = 34/157 (21%), Positives = 54/157 (34%), Gaps = 8/157 (5%)

Query: 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSG 333
           +        S ++P    S   S   + LS N L+      F N + L WL L+      
Sbjct: 15  TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 334 KIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSL 392
                      L  L L+ N +    P  F  L+ L+ L   E +L          L +L
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 393 RRLYMHMNAFNG-SIPGALRRSLSLTVLDLRDNEFSG 428
           ++L +  N  +   +P       +L  +DL  N    
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (371), Expect = 6e-39
 Identities = 74/391 (18%), Positives = 132/391 (33%), Gaps = 23/391 (5%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L +L  L L+ N +        S L+ ++ L      L       I ++K+L+ L++  N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPE--YQLKALNLRNCSLQALPS 169
             +         N + L+   LS N +  I   +   L +      +L+L    +  +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 170 ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS--------- 220
              +++ L  + L +N          +Q    L+   L+         L           
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS 280
               +    +++  +      ++   L  + S +L             S     + L+L 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELV 312

Query: 281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNN--HFSGKIQDG 338
           +  F  + P   L    SL  L+ + N         +  +L +L L+ N   F G     
Sbjct: 313 NCKFG-QFPTLKLK---SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 339 LSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLY 396
               TSL  LDLS N +   +   F  L  L+ LD   + L      S   +L +L  L 
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 397 MHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           +       +  G      SL VL +  N F 
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  145 bits (367), Expect = 2e-38
 Identities = 96/395 (24%), Positives = 145/395 (36%), Gaps = 31/395 (7%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKV----LDLSSNQLTGNLQSVIANIKSLEYLS 108
           L NL  LDLS N +       L  L  + +    LDLS N +          I  L  L+
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLS-------NSLVKIETEEFPGLPEYQLKALNLR- 160
           L +N          ++  + L+V +L         +L K +     GL    ++   L  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 161 -NCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLP 219
            +  L  +  +     ++    L    ++ +        N     L L+N          
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKF--GQFPT 321

Query: 220 SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENG--FEGRIPSSMSEMKRLESL 277
                L RL  + NK            LP L  L+LS NG  F+G    S      L+ L
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 278 DLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG---EVVFPNSTNLCWLYLNNNHFSGK 334
           DLS N     +   F  G   L  L    ++L+      VF +  NL +L +++ H    
Sbjct: 379 DLSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 335 IQDGLSKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCGSVPSSF-NLSSL 392
                +  +SL  L ++ N       P  F  L  L FLD+S+ QL    P++F +LSSL
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 393 RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           + L M  N       G   R  SL  + L  N + 
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (325), Expect = 9e-33
 Identities = 81/369 (21%), Positives = 149/369 (40%), Gaps = 23/369 (6%)

Query: 56  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNL-QSVIANIKSLEYLSLDDNNF 114
            + LDLS N +   + P       +  L L +N  + N+ ++ I  +  LE   L    F
Sbjct: 179 NLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 115 EGL-----FSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPE--YQLKALNLRNCSLQAL 167
                   F  ++L+    L + +   + +    ++   L      + + +L + +++ +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 227
                     + ++L + K     P+  L++  +L        +      LPS    L  
Sbjct: 298 KD-FSYNFGWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGGNAFSEVDLPS----LEF 351

Query: 228 LDISHNKFSCQ-LPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG 286
           LD+S N  S +            L  L+LS NG    + S+   +++LE LD   +N   
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 287 ELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDG-LSKAT 343
                      +L +L +S  H +     +F   ++L  L +  N F         ++  
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 344 SLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNA 401
           +L  LDLS   L    P  F +LS LQ L+++ NQL  SVP      L+SL+++++H N 
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNP 529

Query: 402 FNGSIPGAL 410
           ++ S P   
Sbjct: 530 WDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (303), Expect = 9e-30
 Identities = 79/370 (21%), Positives = 131/370 (35%), Gaps = 31/370 (8%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-N 136
              K LDLS N L         +   L+ L L     + +    + ++ S L    L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGN 86

Query: 137 SLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWL 195
            +  +    F GL    L+ L     +L +L +  +  L  L+ ++++HN +Q       
Sbjct: 87  PIQSLALGAFSGLS--SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 196 LQNNTKLDTLYLLNNSLS----GNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPEL 250
             N T L+ L L +N +      + + L       L LD+S N  +  +     K +  L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RL 202

Query: 251 LSLNLSENGFEGRIPSSM-SEMKRLESLDLSSNNFSG-----ELPRQFLSGCFSLSFLSL 304
             L L  N     +  +    +  LE   L    F       +  +  L G  +L+    
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 305 SDNHLQGEV-----VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI 359
              +L   +     +F   TN+    L +           S       L+L N     Q 
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFG-QF 319

Query: 360 PPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFN--GSIPGALRRSLSLT 417
           P     L  L+ L  + N+  G+  S  +L SL  L +  N  +  G    +   + SL 
Sbjct: 320 P--TLKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 418 VLDLRDNEFS 427
            LDL  N   
Sbjct: 377 YLDLSFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  116 bits (292), Expect = 2e-28
 Identities = 69/352 (19%), Positives = 128/352 (36%), Gaps = 29/352 (8%)

Query: 45  FVNTGICELKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDL------SSNQLTGNLQSV 97
           F+  G  +   L +L L  N    ++   C+  L  ++V  L      +   L    +S 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 98  IANIKSL--EYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQL 154
           +  + +L  E   L   ++      +     + +  F L   ++ +++         +  
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK----DFSYNFGW 306

Query: 155 KALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG 214
           + L L NC     P++ L+ L  + +  + NK    F      +   L+ L L  N LS 
Sbjct: 307 QHLELVNCKFGQFPTLKLKSL--KRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSF 361

Query: 215 NFQLPSSKHD---LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM-SE 270
                 S      L  LD+S N     +  N    L +L  L+   +  +     S+   
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 271 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLN 327
           ++ L  LD+S  +          +G  SL  L ++ N  Q      +F    NL +L L+
Sbjct: 420 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 328 NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379
                       +  +SL  L++++N L       F  L+ LQ + +  N  
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 16/194 (8%)

Query: 53  LKNLVELDLSKNNLY--GHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
           L +L  LDLS+N L   G  S      T +K LDLS N +   + S    ++ LE+L   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 111 DNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQA--L 167
            +N + +  F+   +   L    +S           F GL    L+ L +   S Q   L
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGNSFQENFL 462

Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQLPSSKH 223
           P I  +  +L F+DLS  +L+ + P+    + + L  L + +N L     G F   +S  
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMASNQLKSVPDGIFDRLTS-- 519

Query: 224 DLLRLDISHNKFSC 237
            L ++ +  N + C
Sbjct: 520 -LQKIWLHTNPWDC 532

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 12/185 (6%)

Query: 251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 310
           ++    E  F  +IP ++      ++LDLS N     L          L  L LS   +Q
Sbjct: 10  ITYQCMELNFY-KIPDNLPF--STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 311 G--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSG 368
              +  + + ++L  L L  N          S  +SL +L      L        G+L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 369 LQFLDISENQL-CGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTV----LDLR 422
           L+ L+++ N +    +P  F NL++L  L +  N         LR    + +    LDL 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 423 DNEFS 427
            N  +
Sbjct: 186 LNPMN 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  143 bits (362), Expect = 6e-38
 Identities = 85/442 (19%), Positives = 145/442 (32%), Gaps = 73/442 (16%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-NLQSVIANIKSLEYLSLDD 111
           L +L  LDLS N+L    S     L+ +K L+L  N      + S+  N+ +L+ L + +
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
                          + L   ++   SL   +++    +    +  L L       L  I
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR--DIHHLTLHLSESAFLLEI 190

Query: 171 LLQQL-DLRFIDLSHNKLQGIFPSW------------------------------LLQNN 199
               L  +R+++L    L     S                               LL+  
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 200 TKLDTLYLLNNSLSGNFQLPSSKHD------------LLRLDISHNKFSCQLPGNMGKIL 247
            +L  +   + +L+G      S+ D            + RL I            +  +L
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLL 309

Query: 248 PELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQ--FLSGCFSLSFLSLS 305
            ++  + +  +       S    +K LE LDLS N    E  +         SL  L LS
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 306 DNHLQ----GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML------ 355
            NHL+       +     NL  L ++ N F   + D       +  L+LS+  +      
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC 428

Query: 356 -----------YGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNG 404
                         +  +   L  LQ L IS N+L  ++P +     L  + +  N    
Sbjct: 429 IPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKS 487

Query: 405 SIPGALRRSLSLTVLDLRDNEF 426
              G   R  SL  + L  N +
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (318), Expect = 8e-32
 Identities = 73/403 (18%), Positives = 141/403 (34%), Gaps = 35/403 (8%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
             NL  L L  + +         +L  ++ LDLS N L+    S    + SL+YL+L  N
Sbjct: 49  CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS--NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
            ++ L   +   N + LQ  ++    +  +I   +F GL    L  L ++  SL+   S 
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT--SLNELEIKALSLRNYQSQ 166

Query: 171 LLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSK----HDL 225
            L+ + D+  + L  ++   +         + +  L L + +L+     P         +
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEI-FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225

Query: 226 LRLDISHNKFSCQLPGNMGKILPELLSLN--------------LSENGFEGRIPSSMSEM 271
            +L    +  + +    + K+L  +L L+               + +  +        E 
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNN 329
             +  L +       +L   + S    +  +++ ++ +         +  +L +L L+ N
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVY-SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 330 HFSGKI---QDGLSKATSLLELDLSNNMLY--GQIPPWFGNLSGLQFLDISENQLCGSVP 384
               +            SL  L LS N L    +       L  L  LDIS N       
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 385 SSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           S      +R L +             +   +L VLD+ +N   
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQ---TLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (287), Expect = 8e-28
 Identities = 74/371 (19%), Positives = 138/371 (37%), Gaps = 29/371 (7%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
           L  + +  +  ++++  L L  +     L      L+ ++ L+L    L     S +   
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRN 161
           +    +             + L + S  ++ KL   ++++   EF       L   N   
Sbjct: 220 EVSSPMKKLAFR------GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 162 CSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQ 217
             + +     ++ + +R + +    L     S +     K+  + + N+ +        Q
Sbjct: 274 SDVVSELG-KVETVTIRRLHIPQFYLFYD-LSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

Query: 218 LPSSKHDLLRLDISHNKFSCQLPGNMG--KILPELLSLNLSENGFE--GRIPSSMSEMKR 273
              S   L  LD+S N    +   N       P L +L LS+N      +    +  +K 
Sbjct: 332 HLKS---LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG 333
           L SLD+S N F   +P         + FL+LS   ++  V       L  L ++NN+   
Sbjct: 389 LTSLDISRNTFH-PMPDSC-QWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLD- 444

Query: 334 KIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSL 392
                L     L EL +S N L   +P        L  + IS NQL       F  L+SL
Sbjct: 445 SFSLFL---PRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 393 RRLYMHMNAFN 403
           +++++H N ++
Sbjct: 500 QKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (279), Expect = 1e-26
 Identities = 74/400 (18%), Positives = 130/400 (32%), Gaps = 62/400 (15%)

Query: 82  VLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLV 139
           V D  S   T    S+ + +  +++ L L  N    +     L+  + LQV  L  + + 
Sbjct: 9   VCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRIN 63

Query: 140 KIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQN 198
            IE + F  L    L+ L+L +  L +L S     L  L++++L  N  Q +  + L  N
Sbjct: 64  TIEGDAFYSLG--SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 199 NTKLDTLYLLNNSLSGNFQLPSSKH--DLLRLDISHNKFSCQLPGNMGKILPELLSLNLS 256
            T L TL + N       +         L  L+I              K + ++  L L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLH 180

Query: 257 ENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF------------------------ 292
            +     +      +  +  L+L   N +                               
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 293 ------LSGCFSLSFLSLSDNHLQGEVVFPNS-------------TNLCWLYLNNNHFSG 333
                 L     LS +   D  L G   F  S               +  L++   +   
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 334 KIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF----NL 389
            +    S    +  + + N+ ++     +  +L  L+FLD+SEN +      +       
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 390 SSLRRLYMHMNAFN--GSIPGALRRSLSLTVLDLRDNEFS 427
            SL+ L +  N           L    +LT LD+  N F 
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 51/288 (17%), Positives = 96/288 (33%), Gaps = 40/288 (13%)

Query: 153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
                + R+ S  ++PS L     ++ +DLS NK+  I     L+    L  L L ++ +
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTA--AMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRI 62

Query: 213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK 272
           +                         + G+    L  L  L+LS+N       S    + 
Sbjct: 63  N------------------------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98

Query: 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNN 329
            L+ L+L  N +             +L  L + +     E+    F   T+L  L +   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 330 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-- 387
                    L     +  L L  +     +  +   LS +++L++ +  L     S    
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 388 -------NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
                     + R   +   +FN  +   LR  L L+ ++  D   +G
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFN-ELLKLLRYILELSEVEFDDCTLNG 265

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (341), Expect = 2e-35
 Identities = 91/380 (23%), Positives = 156/380 (41%), Gaps = 29/380 (7%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
            G+  L NL +++ S N L       L NLT +  + +++NQ+     + +AN+ +L  L
Sbjct: 62  DGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGL 117

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
           +L +N    +    +L N   L   +LS++ +  +     GL    L+ L+  N      
Sbjct: 118 TLFNNQITDIDPLKNLTN---LNRLELSSNTIS-DISALSGLT--SLQQLSFGNQVTDLK 171

Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 227
           P   L    L  +D+S NK+  I     L   T L++L   NN +S    L    + L  
Sbjct: 172 PLANLTT--LERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITPLGILTN-LDE 225

Query: 228 LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGE 287
           L ++ N+      G +   L  L  L+L+ N      P  +S + +L  L L +N  S  
Sbjct: 226 LSLNGNQLK--DIGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 288 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE 347
            P   L+G  +L+ L L++N L+      N  NL +L L  N+ S      +S  T L  
Sbjct: 281 SP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQR 335

Query: 348 LDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIP 407
           L   NN +         NL+ + +L    NQ+   +    NL+ + +L ++  A+  +  
Sbjct: 336 LFFYNNKV--SDVSSLANLTNINWLSAGHNQI-SDLTPLANLTRITQLGLNDQAWTNAPV 392

Query: 408 GALRRSLSLTVLDLRDNEFS 427
                      +        
Sbjct: 393 NYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  129 bits (326), Expect = 3e-33
 Identities = 85/383 (22%), Positives = 155/383 (40%), Gaps = 39/383 (10%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
             +L  +  L   +  +   +   +  L ++  ++ S+NQLT    + + N+  L  + +
Sbjct: 42  QTDLDQVTTLQADRLGI-KSIDG-VEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILM 97

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
           ++N    +    +L N   L    L N+ +  + +    L    L  L L + ++  + +
Sbjct: 98  NNNQIADITPLANLTN---LTGLTLFNNQIT-DIDPLKNLT--NLNRLELSSNTISDISA 151

Query: 170 I----LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
           +     LQQL         N++  + P   L N T L+ L + +N +S +  + +   +L
Sbjct: 152 LSGLTSLQQLSF------GNQVTDLKP---LANLTTLERLDISSNKVS-DISVLAKLTNL 201

Query: 226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS 285
             L  ++N+ S  +       L  L  L+L+ N  +     +++ +  L  LDL++N  S
Sbjct: 202 ESLIATNNQIS-DITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256

Query: 286 GELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 345
              P   LSG   L+ L L  N +         T L  L LN N         +S   +L
Sbjct: 257 NLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNL 311

Query: 346 LELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGS 405
             L L  N +    P    +L+ LQ L    N++   V S  NL+++  L    N  +  
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQISDL 368

Query: 406 IPGALRRSLSLTVLDLRDNEFSG 428
            P  L     +T L L D  ++ 
Sbjct: 369 TP--LANLTRITQLGLNDQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (310), Expect = 4e-31
 Identities = 86/379 (22%), Positives = 140/379 (36%), Gaps = 37/379 (9%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L   ++  L K N+   +S   ++L  +  L      +       +  + +L  ++  +N
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 78

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
               +    +L     L    ++ N +  I       L    L  L L N  +  +   L
Sbjct: 79  QLTDITPLKNLTK---LVDILMNNNQIADI--TPLANLT--NLTGLTLFNNQITDIDP-L 130

Query: 172 LQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN--SLSGNFQLPSSKHDLLRLD 229
               +L  ++LS N +  I     L   T L  L   N    L     L +    L RLD
Sbjct: 131 KNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTDLKPLANLTT----LERLD 183

Query: 230 ISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELP 289
           IS NK S      + K L  L SL  + N      P  +  +  L+ L L+ N       
Sbjct: 184 ISSNKVSD--ISVLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT 238

Query: 290 RQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELD 349
              L+   +L+ L L++N +         T L  L L  N  S      L+  T+L  L+
Sbjct: 239 ---LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLE 293

Query: 350 LSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGA 409
           L+ N L    P    NL  L +L +  N +    P S +L+ L+RL+ + N  +      
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS-SLTKLQRLFFYNNKVSDVSS-- 348

Query: 410 LRRSLSLTVLDLRDNEFSG 428
           L    ++  L    N+ S 
Sbjct: 349 LANLTNINWLSAGHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (304), Expect = 3e-30
 Identities = 89/374 (23%), Positives = 146/374 (39%), Gaps = 32/374 (8%)

Query: 56  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 115
           L    ++++     +    + L       L    +T        ++  +  L  D    +
Sbjct: 3   LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIK 59

Query: 116 GLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL 175
            +     L N   L     SN+ +  +      L   +L  + + N  +  +    L  L
Sbjct: 60  SIDGVEYLNN---LTQINFSNNQLT-DITPLKNLT--KLVDILMNNNQIADITP--LANL 111

Query: 176 D-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNK 234
             L  + L +N++  I P   L+N T L+ L L +N++S +    S    L +L   +  
Sbjct: 112 TNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQV 167

Query: 235 FSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLS 294
              +   N    L  L  L++S N       S ++++  LESL  ++N  S   P   L 
Sbjct: 168 TDLKPLAN----LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP---LG 218

Query: 295 GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM 354
              +L  LSL+ N L+      + TNL  L L NN  S      LS  T L EL L  N 
Sbjct: 219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQ 276

Query: 355 LYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSL 414
           +    P     L+ L  L+++ENQL    P S NL +L  L ++ N  +   P  +    
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISPIS-NLKNLTYLTLYFNNISDISP--VSSLT 331

Query: 415 SLTVLDLRDNEFSG 428
            L  L   +N+ S 
Sbjct: 332 KLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (299), Expect = 1e-29
 Identities = 82/380 (21%), Positives = 142/380 (37%), Gaps = 44/380 (11%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG--------NLQ---- 95
           T +  L NL  L L  N +       L NLT++  L+LSSN ++         +LQ    
Sbjct: 106 TPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163

Query: 96  -------SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFP 147
                    +AN+ +LE L +  N    +     L N   L+    + N +  I      
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISDI--TPLG 218

Query: 148 GLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYL 207
            L    L  L+L    L+ + + L    +L  +DL++N++  + P   L   TKL  L L
Sbjct: 219 ILT--NLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP---LSGLTKLTELKL 272

Query: 208 LNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS 267
             N +S    L      L  L+++ N+     P +    L  L  L L  N      P  
Sbjct: 273 GANQISNISPLAGLTA-LTNLELNENQLEDISPISN---LKNLTYLTLYFNNISDISP-- 326

Query: 268 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLN 327
           +S + +L+ L   +N  S       L+   ++++LS   N +       N T +  L LN
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383

Query: 328 NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387
           +  ++    +  +  +    +      L    P    +       DI+ N    +   S+
Sbjct: 384 DQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYTNEVSY 441

Query: 388 NLSSLRRLYMHMNAFNGSIP 407
             S    +      F+G++ 
Sbjct: 442 TFSQPVTIGKGTTTFSGTVT 461

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  131 bits (332), Expect = 1e-34
 Identities = 72/380 (18%), Positives = 133/380 (35%), Gaps = 26/380 (6%)

Query: 38  NGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV 97
           +     V+       L N   +    + +    +  L +   +++L+L+  Q+       
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA 88

Query: 98  IANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKA 156
            A   +++ L +  N    L   +  +N   L V  L  N L  +    F   P  +L  
Sbjct: 89  FAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP--KLTT 145

Query: 157 LNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN 215
           L++ N +L+ +     Q    L+ + LS N+L  +  S +      L    +  N LS  
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLLSTL 201

Query: 216 FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLE 275
               +    +  LD SHN  +  + G    +  EL  L L  N       + +     L 
Sbjct: 202 AIPIA----VEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLV 251

Query: 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGK 334
            +DLS N    ++          L  L +S+N L    +       L  L L++NH    
Sbjct: 252 EVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-H 309

Query: 335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRR 394
           ++    +   L  L L +N +   +         L+ L +S N    +   +    ++ R
Sbjct: 310 VERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVAR 365

Query: 395 LYMHMNAFNGSIPGALRRSL 414
             +     +  I   L   L
Sbjct: 366 PAVDDADQHCKIDYQLEHGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (327), Expect = 6e-34
 Identities = 72/389 (18%), Positives = 138/389 (35%), Gaps = 46/389 (11%)

Query: 41  PLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN 100
           P    +++ +       ++ +       +       L + K++   ++ +     +++ +
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 101 IKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNL 159
            + +E L+L+D   E +    +      +Q   +  N++  +    F  +P   L  L L
Sbjct: 68  FRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP--LLTVLVL 124

Query: 160 RNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQL 218
               L +LP  +      L  + +S+N L+ I      Q  T L  L L +N L+    +
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLT---HV 180

Query: 219 PSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLD 278
             S                        ++P L   N+S N       S+++    +E LD
Sbjct: 181 DLS------------------------LIPSLFHANVSYNLL-----STLAIPIAVEELD 211

Query: 279 LSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDG 338
            S N+ +  +          L+ L L  N+L       N   L  + L+ N     +   
Sbjct: 212 ASHNSIN-VVRGPVNV---ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 339 LSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMH 398
             K   L  L +SNN L   +  +   +  L+ LD+S N L     +      L  LY+ 
Sbjct: 268 FVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326

Query: 399 MNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
            N+             +L  L L  N++ 
Sbjct: 327 HNSIVTLKLSTHH---TLKNLTLSHNDWD 352

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  135 bits (342), Expect = 1e-34
 Identities = 90/407 (22%), Positives = 153/407 (37%), Gaps = 46/407 (11%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLT--HIKVLDLSSNQLTGNLQSVIANI------KSL 104
           L +L  +D S N ++      L  L    +    L++N L   +               L
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

Query: 105 EYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS------------NSLVKIETEEFPGLPEY 152
           E L +  N +    + N     SK Q F L             +++   +   F GL   
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 153 QLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS 211
            ++ L+L +  + +L S + + L DL+ ++L++NK+  I           L  L L  N 
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNL 325

Query: 212 LSG-NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSE 270
           L             +  +D+  N  +  +     K L +L +L+L +N       +++  
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL-----TTIHF 379

Query: 271 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG---EVVFPNSTNLCWLYLN 327
           +  +  + LS N               + + + LS+N L+            +L  L LN
Sbjct: 380 IPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 328 NNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPPW-----FGNLSGLQFLDISENQLCG 381
            N FS    D   S+  SL +L L  NML            F  LS LQ L ++ N L  
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 382 SVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
             P  F +L++LR L ++ N         L  +L   +LD+  N+  
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL--EILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  134 bits (339), Expect = 3e-34
 Identities = 68/383 (17%), Positives = 128/383 (33%), Gaps = 39/383 (10%)

Query: 75  SNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKL 134
             L   + L LS N +     S    ++ L+ L L            + +N   L++  L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 135 S-NSLVKIETEEFPGLPEYQLKALNLRNCSLQ--ALPSILLQQL-DLRFIDLSHNKLQGI 190
             + +  +  + F GL    L  L L  C L    L     + L  L  +DLS N+++ +
Sbjct: 81  GSSKIYFLHPDAFQGLF--HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 191 FPSWLLQNNTKLDTLYLLNNSLS----GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKI 246
           +          L ++   +N +        +    K  L    ++ N    ++  + GK 
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKC 197

Query: 247 LPELLSLNLSE-----------------NGFEGRIPSSMSEMKRLESLDLSSNNFSGELP 289
           +    ++ L                   N        S+     +       +N   +  
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPD 256

Query: 290 RQFLSGCF--SLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 345
           +   +G    S+  L LS   +      VF    +L  L L  N  +    +      +L
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316

Query: 346 LELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNG 404
             L+LS N+L       F  L  + ++D+ +N +      +F  L  L+ L +  NA   
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT- 375

Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
                +    S+  + L  N+  
Sbjct: 376 ----TIHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  132 bits (333), Expect = 2e-33
 Identities = 83/406 (20%), Positives = 156/406 (38%), Gaps = 41/406 (10%)

Query: 53  LKNLVELDLSKNNLYG-HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI--KSLEYLSL 109
           LK L  LDLSKN +   +L P    L  +K +D SSNQ+    +  +  +  K+L + SL
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 110 DDNNFEGLFSFNSLKNHSK-----LQVFKLSNSLVKIE-----------TEEFPGLPEYQ 153
             N+     S +  K  +      L++  +S +   ++           ++ F  +  + 
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 154 LKALNLRNCSLQALPSILLQQLD---LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
           +        +++         L    +R +DLSH  +  +    + +    L  L L  N
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYN 300

Query: 211 SLSG-NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMS 269
            ++    +      +L  L++S+N    +L  +    LP++  ++L +N        +  
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 270 EMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNN 329
            +++L++LDL  N  +       +    S+  + LS N L    +   +     ++L+ N
Sbjct: 360 FLEKLQTLDLRDNALT------TIHFIPSIPDIFLSGNKL--VTLPKINLTANLIHLSEN 411

Query: 330 HFSG-KIQDGLSKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCGSVPSSF 387
                 I   L +   L  L L+ N                L+ L + EN L  +  +  
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

Query: 388 ------NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
                  LS L+ LY++ N  N   PG      +L  L L  N  +
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  119 bits (299), Expect = 5e-29
 Identities = 84/352 (23%), Positives = 136/352 (38%), Gaps = 27/352 (7%)

Query: 55  NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 114
           ++  LDLS   ++   S     L  +KVL+L+ N++          + +L+ L+L  N  
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 115 EGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQ 173
             L+S ++     K+    L  N +  I+ + F  L   +L+ L+LR+ +L  +  I   
Sbjct: 327 GELYS-SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE--KLQTLDLRDNALTTIHFIPS- 382

Query: 174 QLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH--DLLRLDIS 231
              +  I LS NKL  +    L  N      ++L  N L     L        L  L ++
Sbjct: 383 ---IPDIFLSGNKLVTLPKINLTAN-----LIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSE-----MKRLESLDLSSNNFSG 286
            N+FS           P L  L L EN  +    + +       +  L+ L L+ N  + 
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN- 493

Query: 287 ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 346
            LP    S   +L  LSL+ N L          NL  L ++ N       D      SL 
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVF---VSLS 550

Query: 347 ELDLSNNMLYGQIP-PWFGNLSGLQFLDISEN--QLCGSVPSSFNLSSLRRL 395
            LD+++N    +     F N      + I+     +    P SF+  SL  L
Sbjct: 551 VLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSL 602

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.6 bits (225), Expect = 1e-19
 Identities = 44/219 (20%), Positives = 76/219 (34%), Gaps = 19/219 (8%)

Query: 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282
            D           + Q+P      L     L LS N       SS   +++L+ L+L S 
Sbjct: 4   FDGRIAFYRFCNLT-QVPQV----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKI--QDG 338
                + ++      +L  L L  + +       F    +L  L L     S  +     
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 339 LSKATSLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQLCGSVPSSFN---LSSLRR 394
                +L  LDLS N +    + P FG L+ L+ +D S NQ+              +L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 395 LYMHMNAFNGSIPGALR------RSLSLTVLDLRDNEFS 427
             +  N+    +           R++ L +LD+  N ++
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 5e-14
 Identities = 58/267 (21%), Positives = 100/267 (37%), Gaps = 22/267 (8%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-NLQSVIANIKSLEY 106
           T I  + ++ ++ LS N L       L+      ++ LS N+L   ++   +  +  L+ 
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTA----NLIHLSENRLENLDILYFLLRVPHLQI 430

Query: 107 LSLDDNNFEGLFSFNSLKNHSKLQVFKLSN------SLVKIETEEFPGLPEYQLKALNLR 160
           L L+ N F       +   +  L+   L           ++  + F GL    L+ L L 
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS--HLQVLYLN 488

Query: 161 NCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLP 219
           +  L +LP  +   L  LR + L+ N+L  +  + L  N   L+ L +  N L      P
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN---LEILDISRNQLLAPN--P 543

Query: 220 SSKHDLLRLDISHNKF--SCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESL 277
                L  LDI+HNKF   C+L   +  +    +++           P S S +  L SL
Sbjct: 544 DVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV-SLFSL 602

Query: 278 DLSSNNFSGELPRQFLSGCFSLSFLSL 304
                +    L     S     +    
Sbjct: 603 STEGCDEEEVLKSLKFSLFIVCTVTLT 629

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (327), Expect = 4e-34
 Identities = 67/349 (19%), Positives = 127/349 (36%), Gaps = 27/349 (7%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L   +   L K ++          L  I  L ++  ++       I  + +LEYL+L+ N
Sbjct: 21  LAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGN 76

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
               +   ++L     L    +  N +  I       L    L+ L L   ++  +   L
Sbjct: 77  QITDISPLSNLVK---LTNLYIGTNKITDI--SALQNLT--NLRELYLNEDNISDISP-L 128

Query: 172 LQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDIS 231
                +  ++L  N          L N T L+ L +  + +     + ++  DL  L ++
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPI-ANLTDLYSLSLN 185

Query: 232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQ 291
           +N+        +   L  L       N       + ++ M RL SL + +N  +   P  
Sbjct: 186 YNQIED--ISPLAS-LTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP-- 238

Query: 292 FLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS 351
            L+    L++L +  N +       + T L  L + +N  S      L+  + L  L L+
Sbjct: 239 -LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLN 295

Query: 352 NNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMN 400
           NN L  +     G L+ L  L +S+N +   +    +LS +        
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIRPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (311), Expect = 6e-32
 Identities = 69/332 (20%), Positives = 139/332 (41%), Gaps = 26/332 (7%)

Query: 49  GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
              EL+++ +L ++   +   +   +  LT+++ L+L+ NQ+T    S ++N+  L  L 
Sbjct: 39  TQEELESITKLVVAGEKV-ASIQG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLY 94

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
           +  N    + +  +L N   L+   L+ +++  I       L   ++ +LNL      + 
Sbjct: 95  IGTNKITDISALQNLTN---LRELYLNEDNISDIS--PLANLT--KMYSLNLGANHNLSD 147

Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 227
            S L     L ++ ++ +K++ + P   + N T L +L L  N +     L +S   L  
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISPL-ASLTSLHY 203

Query: 228 LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGE 287
                N+ +  +       +  L SL +  N       S ++ + +L  L++ +N  S  
Sbjct: 204 FTAYVNQIT-DITPVAN--MTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDI 258

Query: 288 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE 347
                +     L  L++  N +    V  N + L  L+LNNN    +  + +   T+L  
Sbjct: 259 NA---VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 348 LDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379
           L LS N +    P    +LS +   D +   +
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 99.5 bits (249), Expect = 2e-23
 Identities = 58/287 (20%), Positives = 111/287 (38%), Gaps = 46/287 (16%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
           + +  L NL EL L+++N+       L+NLT +  L+L +N    +L S ++N+  L YL
Sbjct: 104 SALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYL 160

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQA 166
           ++ ++  + +    +L +   L    L+ N +  I       L    L         +  
Sbjct: 161 TVTESKVKDVTPIANLTD---LYSLSLNYNQIEDIS--PLASLT--SLHYFTAYVNQITD 213

Query: 167 LPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
           +    +  +  L  + + +NK+  + P   L N ++L  L +  N +S    + + K   
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD---INAVKD-- 263

Query: 226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS 285
                                L +L  LN+  N       S ++ + +L SL L++N   
Sbjct: 264 ---------------------LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLG 300

Query: 286 GELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFS 332
            E       G  +L+ L LS NH+       + + +      N    
Sbjct: 301 NEDMEVI-GGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 51/279 (18%), Positives = 97/279 (34%), Gaps = 27/279 (9%)

Query: 154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN--- 210
              L      +  +        +     L    +  +      +    +  L +      
Sbjct: 2   AATLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA 57

Query: 211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSE 270
           S+ G   L +    L  L+++ N+ +   P      L +L +L +  N       S++  
Sbjct: 58  SIQGIEYLTN----LEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKIT--DISALQN 108

Query: 271 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNN 329
           +  L  L L+ +N S   P   L+    +  L+L  NH   ++    N T L +L +  +
Sbjct: 109 LTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

Query: 330 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNL 389
                    ++  T L  L L+ N +    P    +L+ L +     NQ+   +    N+
Sbjct: 166 KVKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI-TDITPVANM 220

Query: 390 SSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           + L  L +  N      P  L     LT L++  N+ S 
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  131 bits (332), Expect = 5e-34
 Identities = 64/330 (19%), Positives = 113/330 (34%), Gaps = 35/330 (10%)

Query: 55  NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 114
               LDL KN +        ++  H++ L+L+ N ++        N+ +L  L L  N  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 115 EGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQ 173
           + +         S L    +S N +V +    F  L    LK+L + +  L  +      
Sbjct: 93  KLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLY--NLKSLEVGDNDLVYISHRAFS 149

Query: 174 QLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISH 232
            L+ L  + L    L  I P+  L +   L  L L + +++                I  
Sbjct: 150 GLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNIN---------------AIRD 193

Query: 233 NKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF 292
             F           L  L  L +S   +   +  +      L SL ++  N +  +P   
Sbjct: 194 YSFKR---------LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

Query: 293 LSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350
           +     L FL+LS N +      +      L  + L     +            L  L++
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303

Query: 351 SNNMLYGQIPP-WFGNLSGLQFLDISENQL 379
           S N L   +    F ++  L+ L +  N L
Sbjct: 304 SGNQL-TTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  129 bits (325), Expect = 4e-33
 Identities = 72/358 (20%), Positives = 127/358 (35%), Gaps = 49/358 (13%)

Query: 81  KVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSL 138
           + +     +      +V   I      L L  N  + L   +   +   L+  +L+ N +
Sbjct: 14  RAVLCHRKRFV----AVPEGIPTETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIV 68

Query: 139 VKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQ 197
             +E   F  L    L+ L LR+  L+ +P  +   L  L  +D+S NK+  +   ++ Q
Sbjct: 69  SAVEPGAFNNLF--NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQ 125

Query: 198 NNTKLDTLYLLNNSLS----GNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLS 252
           +   L +L + +N L       F  L S    L +L +     +  +P      L  L+ 
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNS----LEQLTLEKCNLT-SIPTEALSHLHGLIV 180

Query: 253 LNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG- 311
           L L           S   + RL+ L++S   +   +    L G  +L+ LS++  +L   
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAV 239

Query: 312 -EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQ 370
             +   +   L +L L+ N  S  I+                             L  LQ
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIS-TIEGS-----------------------MLHELLRLQ 275

Query: 371 FLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
            + +   QL    P +F  L+ LR L +  N              +L  L L  N  +
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  114 bits (288), Expect = 4e-28
 Identities = 59/281 (20%), Positives = 105/281 (37%), Gaps = 19/281 (6%)

Query: 153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
           Q +A+        A+P  +    + R +DL  N+++ +       +   L+ L L  N +
Sbjct: 12  QDRAVLCHRKRFVAVPEGIPT--ETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIV 68

Query: 213 S----GNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS 267
           S    G F  L +    L  L +  N+    +P  +   L  L  L++SEN     +   
Sbjct: 69  SAVEPGAFNNLFN----LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 268 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLY 325
             ++  L+SL++  N+    +  +  SG  SL  L+L   +L         +   L  L 
Sbjct: 124 FQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 326 LNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPS 385
           L + + +        +   L  L++S+      + P       L  L I+   L  +VP 
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPY 241

Query: 386 S--FNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
               +L  LR L +  N  +      L   L L  + L   
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (268), Expect = 2e-25
 Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 16/240 (6%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L NL +LD+S+N +   L     +L ++K L++  N L        + + SLE L+L+  
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNL-RNCSLQALPSI 170
           N   +    +L +   L V +L   ++  I    F  L   +LK L +     L  +   
Sbjct: 163 NLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY--RLKVLEISHWPYLDTMTPN 219

Query: 171 LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQ-LPSSKHDL 225
            L  L+L  + ++H  L  + P   +++   L  L L  N +S         L      L
Sbjct: 220 CLYGLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR----L 274

Query: 226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS 285
             + +   + +  +     + L  L  LN+S N       S    +  LE+L L SN  +
Sbjct: 275 QEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 7/209 (3%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L  L+ L L   N+          L  +KVL++S       +        +L  LS+   
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
           N   +  + ++++   L+   LS N +  IE      L   +L+ + L    L  +    
Sbjct: 235 NLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL--RLQEIQLVGGQLAVVEPYA 291

Query: 172 LQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDI 230
            + L+ LR +++S N+L  +    +  +   L+TL L +N L+ + +L        RL+ 
Sbjct: 292 FRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNF 350

Query: 231 SHNKFSCQLPGNM-GKILPELLSLNLSEN 258
           +  + +C  P  + GK   +   + L   
Sbjct: 351 NRQQPTCATPEFVQGKEFKDFPDVLLPNY 379

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 31/154 (20%)

Query: 38  NGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPC-LSNLTHIKVLDLSSNQLTGNLQS 96
           +  P    +        NL  L ++  NL   +    + +L +++ L+LS N ++     
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIS----- 261

Query: 97  VIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLK 155
                      +++ +    L          +LQ  +L    L  +E   F GL    L+
Sbjct: 262 -----------TIEGSMLHEL---------LRLQEIQLVGGQLAVVEPYAFRGLN--YLR 299

Query: 156 ALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQ 188
            LN+    L  L   +   +  L  + L  N L 
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  126 bits (318), Expect = 8e-32
 Identities = 74/379 (19%), Positives = 138/379 (36%), Gaps = 49/379 (12%)

Query: 51  CELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
           C   ++  +D+   ++Y         L + K++   ++ +     +++ + + +E L+L+
Sbjct: 27  CVFYDV-HIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 111 DNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
           D   E +    +      +Q   +  N++  +    F  +P   L  L L    L +LP 
Sbjct: 84  DLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP--LLTVLVLERNDLSSLPR 140

Query: 170 ILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL 228
            +      L  + +S+N L+ I      Q  T L  L L +N L+    +  S       
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLT---HVDLS------- 189

Query: 229 DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288
                            ++P L   N+S N       S+++    +E LD S N+ +  +
Sbjct: 190 -----------------LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VV 226

Query: 289 PRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 348
                     L+ L L  N+L       N   L  + L+ N     +     K   L  L
Sbjct: 227 RGPVNV---ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283

Query: 349 DLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPG 408
            +SNN L   +  +   +  L+ LD+S N L     +      L  LY+  N+       
Sbjct: 284 YISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 342

Query: 409 ALRRSLSLTVLDLRDNEFS 427
                 +L  L L  N++ 
Sbjct: 343 THH---TLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  126 bits (318), Expect = 8e-32
 Identities = 72/380 (18%), Positives = 133/380 (35%), Gaps = 26/380 (6%)

Query: 38  NGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV 97
           +     V+       L N   +    + +    +  L +   +++L+L+  Q+       
Sbjct: 35  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA 94

Query: 98  IANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKA 156
            A   +++ L +  N    L   +  +N   L V  L  N L  +    F   P  +L  
Sbjct: 95  FAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP--KLTT 151

Query: 157 LNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN 215
           L++ N +L+ +     Q    L+ + LS N+L  +  S +      L    +  N LS  
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLLSTL 207

Query: 216 FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLE 275
               +    +  LD SHN  +  + G    +  EL  L L  N       + +     L 
Sbjct: 208 AIPIA----VEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLV 257

Query: 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGK 334
            +DLS N    ++          L  L +S+N L    +       L  L L++NH    
Sbjct: 258 EVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-H 315

Query: 335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRR 394
           ++    +   L  L L +N +   +         L+ L +S N    +   +    ++ R
Sbjct: 316 VERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVAR 371

Query: 395 LYMHMNAFNGSIPGALRRSL 414
             +     +  I   L   L
Sbjct: 372 PAVDDADQHCKIDYQLEHGL 391

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 7/184 (3%)

Query: 247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 306
                 +++     +         +   + +   ++    +LP   L     +  L+L+D
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 84

Query: 307 NHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFG 364
             ++      F  +  +  LY+  N               L  L L  N L       F 
Sbjct: 85  LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144

Query: 365 NLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRD 423
           N   L  L +S N L      +F   +SL+ L +  N         +    SL   ++  
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP---SLFHANVSY 201

Query: 424 NEFS 427
           N  S
Sbjct: 202 NLLS 205

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (316), Expect = 8e-32
 Identities = 59/395 (14%), Positives = 123/395 (31%), Gaps = 32/395 (8%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
                   ++ ++L   L+    +  ++K LDLS N L+    + +A    LE L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 113 NFEGLFSFNSLKN----------------HSKLQVFKLS-NSLVKIETEEFPGLPEYQLK 155
                    SL                     ++    + N++ ++      G      K
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG-----KK 123

Query: 156 ALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG 214
            + L N  +  L  +       ++++DL  N++  +  + L  ++  L+ L L  N +  
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 215 NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRL 274
           + +       L  LD+S NK +  +          +  ++L  N     I  ++   + L
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 275 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGK 334
           E  DL  N F     R F S    +  ++               T     +         
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 335 IQDGLSKATSLLELDLSNNMLYG----QIPPWFGNLSGLQFLDISENQLCGSVPSSF-NL 389
                 +  +L   + +     G    ++     N +  + +D  + Q    +       
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 390 SSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
            +   L     A +  +    R    L     +  
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (269), Expect = 1e-25
 Identities = 52/332 (15%), Positives = 96/332 (28%), Gaps = 40/332 (12%)

Query: 94  LQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ 153
           +  +  N    +   + D++                        L +             
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS------------------------LKQALASLRQSAW--N 35

Query: 154 LKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
           +K L+L    L  + +  L     L  ++LS N L        L++ + L TL L NN +
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV 92

Query: 213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK 272
                 PS    +  L  ++N  S ++  +         ++ L+ N              
Sbjct: 93  QELLVGPS----IETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFS 332
           R++ LDL  N        +  +   +L  L+L  N +           L  L L++N  +
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 333 GKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSL 392
             +      A  +  + L NN L   I         L+  D+  N         F   + 
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 393 RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
           R   +                   T+      
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.7 bits (238), Expect = 2e-21
 Identities = 65/279 (23%), Positives = 111/279 (39%), Gaps = 43/279 (15%)

Query: 153 QLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS 211
           + K   + + SL+   + L Q   +++ +DLS N L  I  +  L   TKL+ L L +N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNV 69

Query: 212 LSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEM 271
           L     L S    L  LD+++N    +L        P + +L+ + N    R+  S    
Sbjct: 70  LYETLDLESLST-LRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS-RVSCSR--G 119

Query: 272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG---EVVFPNSTNLCWLYLNN 328
           +  +++ L++N  +  L          + +L L  N +       +  +S  L  L L  
Sbjct: 120 QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN 388
           N     ++  +     L  LDLS+N L   + P F + +G+ ++ +  N+L         
Sbjct: 179 NFIY-DVKGQVVF-AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL--------- 226

Query: 389 LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
                            I  ALR S +L   DLR N F 
Sbjct: 227 ---------------VLIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 46/384 (11%), Positives = 104/384 (27%), Gaps = 40/384 (10%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYG-HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN 100
           +T+  +        +  LDL  N +   + +   ++   ++ L+L  N +  +++  +  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-V 189

Query: 101 IKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR 160
              L+ L L  N    +                           EF       +  ++LR
Sbjct: 190 FAKLKTLDLSSNKLAFM-------------------------GPEFQSAA--GVTWISLR 222

Query: 161 NCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 220
           N  L  +   L    +L   DL  N             N ++ T+     ++        
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNE 280

Query: 221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEG----RIPSSMSEMKRLES 276
            +  +  L          LP      L  L     +    +G    R+        R   
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGK 334
           +D     +   +  Q      +   L      L  +V         L             
Sbjct: 341 IDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399

Query: 335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRR 394
                 ++   L   +        +       + ++  D+ +++       +  L  L  
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459

Query: 395 LY-MHMNAFNGSIPGALRRSLSLT 417
              + + + N ++   + R  +L 
Sbjct: 460 EADLALASANATLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 12/159 (7%)

Query: 271 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNN 328
             R +   ++ ++   +         +++  L LS N L           T L  L L++
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN 388
           N     +   L   ++L  LDL+NN +  ++         ++ L  + N +   V  S  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYV-QELLV----GPSIETLHAANNNI-SRVSCS-R 118

Query: 389 LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
               + +Y+  N               +  LDL+ NE  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD 373
           +  N        + ++     +      A ++ ELDLS N L           + L+ L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 374 ISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           +S N L        +LS+LR L ++ N         L    S+  L   +N  S
Sbjct: 65  LSSNVL-YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLR 393
           I +            ++++ L   +     +   ++ LD+S N L     +     + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 394 RLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
            L +  N         L    +L  LDL +N   
Sbjct: 62  LLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 363 FGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDL 421
             N +  +   ++++ L  ++ S   +  +++ L +  N  +      L     L +L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 422 RDNEFSG 428
             N    
Sbjct: 66  SSNVLYE 72

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  117 bits (296), Expect = 2e-29
 Identities = 93/385 (24%), Positives = 152/385 (39%), Gaps = 43/385 (11%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-N 136
            H+  +DLS N +    ++  + ++ L++L ++      +   N+ +  S L + KL  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 137 SLVKIETEEFPGLPEYQLKALNLRNCSLQA--LPSILLQQL-DLRFIDLSHNKLQGIFPS 193
             +++ET  F GL    L+ L L  C+L    L     + L  L  + L  N ++ I P+
Sbjct: 90  QFLQLETGAFNGLA--NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 194 WLLQNNTKLDTLYLLNNSLS----GNFQ-LPSSKHDLLRL------DISHNKFSCQLPGN 242
               N  +   L L  N +      +          LLRL      D++      +  GN
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 243 MGKILPELLSLNLSENGFEGRIPSSMSEMKRLESL-------------DLSSNNFSGELP 289
             K    + +L+LS NGF+  +     +      +                  NF     
Sbjct: 208 PFK-NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 290 RQFLS-GCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSL 345
             F       +    LS + +    + VF + T+L  L L  N  + KI D      T L
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325

Query: 346 LELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAF 402
           L+L+LS N L G I    F NL  L+ LD+S N +  ++       L +L+ L +  N  
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQL 383

Query: 403 NGSIP-GALRRSLSLTVLDLRDNEF 426
             S+P G   R  SL  + L  N +
Sbjct: 384 K-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (269), Expect = 1e-25
 Identities = 79/360 (21%), Positives = 128/360 (35%), Gaps = 38/360 (10%)

Query: 53  LKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNL--QSVIANIKSLEYLSL 109
           L +L+ L L  N     L     + L +++VL L+   L G +   +    + SLE L L
Sbjct: 78  LSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALP 168
            DNN + +   +   N  +  V  L+ N +  I  E+           L L + +LQ + 
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196

Query: 169 SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL 228
              L                          NT + TL L  N      +  + +      
Sbjct: 197 EYWLGWE----------------KCGNPFKNTSITTLDLSGNGFK---ESMAKRFFDAIA 237

Query: 229 DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288
                        NMG         +     F+G   S       +++ DLS +     L
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG------VKTCDLSKSKIF-AL 290

Query: 289 PRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 346
            +   S    L  L+L+ N +    +  F   T+L  L L+ N               L 
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350

Query: 347 ELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFN 403
            LDLS N +   +    F  L  L+ L +  NQL  SVP      L+SL+++++H N ++
Sbjct: 351 VLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 9/138 (6%)

Query: 298 SLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNM 354
            ++++ LS N +    E  F    +L +L +        I++      +SL+ L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 355 LYGQIPPW-FGNLSGLQFLDISENQLCGSV--PSSF-NLSSLRRLYMHMNAFNGSIPGAL 410
              Q+    F  L+ L+ L +++  L G+V   + F  L+SL  L +  N      P + 
Sbjct: 91  F-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 411 RRSL-SLTVLDLRDNEFS 427
             ++    VLDL  N+  
Sbjct: 150 FLNMRRFHVLDLTFNKVK 167

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (282), Expect = 3e-28
 Identities = 53/332 (15%), Positives = 99/332 (29%), Gaps = 41/332 (12%)

Query: 94  LQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ 153
           +  +  N    +   + D++                        L +             
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS------------------------LKQALASLRQSAW--N 35

Query: 154 LKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
           +K L+L    L  + +  L     L  ++LS N L        L++ + L TL L NN +
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV 92

Query: 213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK 272
                 PS    +  L  ++N  S ++  +         ++ L+ N              
Sbjct: 93  QELLVGPS----IETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFS 332
           R++ LDL  N        +  +   +L  L+L  N +           L  L L++N  +
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 333 GKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSL 392
             +      A  +  + L NN L   I         L+  D+  N         F   + 
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 393 RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
           R   +        + G      ++  L     
Sbjct: 263 RVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (271), Expect = 1e-26
 Identities = 52/333 (15%), Positives = 112/333 (33%), Gaps = 32/333 (9%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
                   ++ ++L   L+    +  ++K LDLS N L+    + +A    LE L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
                    SL     L+   L+ N +     +E    P   ++ L+  N ++  +    
Sbjct: 69  VLYETLDLESLST---LRTLDLNNNYV-----QELLVGP--SIETLHAANNNISRVSCSR 118

Query: 172 LQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG--NFQLPSSKHDLLRLD 229
            Q    + I L++NK+  +         +++  L L  N +      +L +S   L  L+
Sbjct: 119 GQG--KKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 230 ISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELP 289
           + +N     + G +     +L +L+LS N     +         +  + L +N     + 
Sbjct: 176 LQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 290 RQFLSGCFSLSFLSLSDNHLQG---EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 346
           +       +L    L  N          F  +  +  +         K+     +  ++ 
Sbjct: 231 KAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVP 286

Query: 347 ELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379
            L          +P         + + +  +  
Sbjct: 287 TLGHYGAYCCEDLP----APFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.9 bits (247), Expect = 2e-23
 Identities = 65/279 (23%), Positives = 112/279 (40%), Gaps = 43/279 (15%)

Query: 153 QLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS 211
           + K   + + SL+   + L Q   +++ +DLS N L  I  +  L   TKL+ L L +N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNV 69

Query: 212 LSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEM 271
           L     L S    L  LD+++N    +L      + P + +L+ + N    R+  S    
Sbjct: 70  LYETLDLESLST-LRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNIS-RVSCSR--G 119

Query: 272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ---GEVVFPNSTNLCWLYLNN 328
           +  +++ L++N  +  L          + +L L  N +       +  +S  L  L L  
Sbjct: 120 QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN 388
           N     ++  +     L  LDLS+N L   + P F + +G+ ++ +  N+L         
Sbjct: 179 NFIY-DVKGQVVF-AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL--------- 226

Query: 389 LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
                            I  ALR S +L   DLR N F 
Sbjct: 227 ---------------VLIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 29/263 (11%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI-KSLEYLS 108
           +  L  L  LDL+ N +       L     I+ L  ++N ++     V  +  +  + + 
Sbjct: 76  LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS----RVSCSRGQGKKNIY 126

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
           L +N    L         S++Q   L  N +  +   E     +  L+ LNL+   +  +
Sbjct: 127 LANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDV 184

Query: 168 PS-ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQLPSSK 222
              ++  +  L+ +DLS NKL  + P    Q+   +  + L NN L           +  
Sbjct: 185 KGQVVFAK--LKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQN-- 238

Query: 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282
             L   D+  N F C    +       + ++         ++     E   + +L     
Sbjct: 239 --LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV---KKLTGQNEEECTVPTLGHYGA 293

Query: 283 NFSGELPRQFLSGCFSLSFLSLS 305
               +LP  F     +L      
Sbjct: 294 YCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 32/181 (17%)

Query: 247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 306
                   ++++  +  + S       ++ LDLS N  S ++    L+    L  L+LS 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 307 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNL 366
           N L   +   + + L  L LNNN+        L    S+  L  +NN +  ++       
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI-SRVSC--SRG 119

Query: 367 SGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
            G + + ++ N++                                    +  LDL+ NE 
Sbjct: 120 QGKKNIYLANNKI-----------------------TMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 427 S 427
            
Sbjct: 157 D 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD 373
           +  N        + ++     +      A ++ ELDLS N L           + L+ L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 374 ISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           +S N L        +LS+LR L ++ N         L    S+  L   +N  S
Sbjct: 65  LSSNVL-YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 32/216 (14%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYG-HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN 100
           +T+  +        +  LDL  N +   + +   ++   ++ L+L  N +  +++  +  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-V 189

Query: 101 IKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR 160
              L+ L L  N    +                           EF       +  ++LR
Sbjct: 190 FAKLKTLDLSSNKLAFM-------------------------GPEFQSAA--GVTWISLR 222

Query: 161 NCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 220
           N  L  +   L    +L   DL  N             N ++ T+     ++        
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNE 280

Query: 221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLS 256
            +  +  L          LP      L  L   +  
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLR 393
           I +            ++++ L   +     +   ++ LD+S N L     +     + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 394 RLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
            L +  N         L    +L  LDL +N   
Sbjct: 62  LLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ 93

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  115 bits (289), Expect = 6e-28
 Identities = 76/377 (20%), Positives = 124/377 (32%), Gaps = 51/377 (13%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
            C       L++ ++ L   L  CL    HI  L +  N LT    S+ A    L  L +
Sbjct: 36  ACLNNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT----SLPALPPELRTLEV 88

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
             N    L          +L +F              P LP   L  L +    L +LP 
Sbjct: 89  SGNQLTSL--PVLPPGLLELSIFSNPL-------THLPALPS-GLCKLWIFGNQLTSLPV 138

Query: 170 ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLD 229
           +      L+ + +S N+L  + P+      ++L  L+  NN L+    LP     L  L 
Sbjct: 139 LPPG---LQELSVSDNQLASL-PALP----SELCKLWAYNNQLT---SLPMLPSGLQELS 187

Query: 230 ISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELP 289
           +S N+ +  LP    +    L  L    N     +P+  S    L+ L +S N  +  LP
Sbjct: 188 VSDNQLA-SLPTLPSE----LYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLT-SLP 237

Query: 290 RQFLSGCFSLSFLSLSDNHLQGEVVFPNS-TNLCWLYLNNNHFSGKIQDGLSKATSLLEL 348
                    L  L +S N L      P   + L  L +  N  + ++ + L   +S   +
Sbjct: 238 ----VLPSELKELMVSGNRLTS---LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289

Query: 349 DLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPG 408
           +L  N L          L  +         +     +  +     R      A +  +P 
Sbjct: 290 NLEGNPL--SERTLQ-ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA-DWLVPA 345

Query: 409 ALRRSLSLTVLDLRDNE 425
                       +   E
Sbjct: 346 REGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (251), Expect = 5e-23
 Identities = 62/317 (19%), Positives = 95/317 (29%), Gaps = 46/317 (14%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
               L  L++S N L   L      L  + +       L        A    L  L +  
Sbjct: 79  LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFG 130

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
           N    L          +L V    N L        P LP  +L  L   N  L +LP + 
Sbjct: 131 NQLTSLP--VLPPGLQELSV--SDNQL-----ASLPALPS-ELCKLWAYNNQLTSLPMLP 180

Query: 172 LQQLDLRFIDLSHNKLQGIFPS-------WLLQNN--------TKLDTLYLLNNSLSGNF 216
                L+ + +S N+L  +          W   N         + L  L +  N L+   
Sbjct: 181 SG---LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT--- 234

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276
            LP    +L  L +S N+ +  LP         LLSL++  N    R+P S+  +    +
Sbjct: 235 SLPVLPSELKELMVSGNRLT-SLPMLPSG----LLSLSVYRNQLT-RLPESLIHLSSETT 288

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ 336
           ++L  N  S E   Q L    S    S                         +      +
Sbjct: 289 VNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE 347

Query: 337 DGLSKATSLLELDLSNN 353
              + A         +N
Sbjct: 348 GEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.8 bits (246), Expect = 2e-22
 Identities = 72/367 (19%), Positives = 118/367 (32%), Gaps = 77/367 (20%)

Query: 58  ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEG 116
           E    +  +   +  CL       VL++  + LT    ++   +   +  L + DNN   
Sbjct: 22  EESRGRAAVVQKMRACL--NNGNAVLNVGESGLT----TLPDCLPAHITTLVIPDNNLT- 74

Query: 117 LFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLD 176
                                         P LP  +L+ L +    L +LP +    L+
Sbjct: 75  ----------------------------SLPALPP-ELRTLEVSGNQLTSLPVLPPGLLE 105

Query: 177 LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFS 236
           L         L  +           L  L++  N L+    LP     L  L +S N+ +
Sbjct: 106 LSIFSNPLTHLPALPSG--------LCKLWIFGNQLT---SLPVLPPGLQELSVSDNQLA 154

Query: 237 CQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGC 296
             LP    +    L  L    N     +P   S    L+ L +S N  +  LP       
Sbjct: 155 -SLPALPSE----LCKLWAYNNQLT-SLPMLPS---GLQELSVSDNQLA-SLPTLP---- 200

Query: 297 FSLSFLSLSDNHLQGEVVFPNS-TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 355
             L  L   +N L      P   + L  L ++ N  +  +       + L EL +S N L
Sbjct: 201 SELYKLWAYNNRLT---SLPALPSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRL 253

Query: 356 YGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSL 414
              +P        L  L +  NQL   +P S  +LSS   + +  N  +        R +
Sbjct: 254 -TSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREI 307

Query: 415 SLTVLDL 421
           +      
Sbjct: 308 TSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.7 bits (243), Expect = 4e-22
 Identities = 69/276 (25%), Positives = 111/276 (40%), Gaps = 41/276 (14%)

Query: 153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
            +  L + + +L +LP++  +   LR +++S N+L  +          +L         L
Sbjct: 62  HITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHL 116

Query: 213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK 272
                LPS    L +L I  N+ +  LP       P L  L++S+N     +P+  S   
Sbjct: 117 P---ALPSG---LCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLA-SLPALPS--- 161

Query: 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS-TNLCWLYLNNNHF 331
            L  L   +N  +  LP         L  LS+SDN L      P   + L  L+  NN  
Sbjct: 162 ELCKLWAYNNQLT-SLPMLP----SGLQELSVSDNQLA---SLPTLPSELYKLWAYNNRL 213

Query: 332 SGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSS 391
           +  +       + L EL +S N L   +P     L   + L +S N+L  S+P     S 
Sbjct: 214 T-SLPALP---SGLKELIVSGNRL-TSLPVLPSEL---KELMVSGNRL-TSLPML--PSG 262

Query: 392 LRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           L  L ++ N     +P +L    S T ++L  N  S
Sbjct: 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (277), Expect = 2e-27
 Identities = 60/293 (20%), Positives = 110/293 (37%), Gaps = 26/293 (8%)

Query: 147 PGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTL 205
             LP      L+L+N  +  +     + L +L  + L +NK+  I P        KL+ L
Sbjct: 48  KDLPPD-TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERL 105

Query: 206 YLLNNSLSG-NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGF-EGR 263
           YL  N L     ++P +   L  L +  N+ + ++  ++   L +++ + L  N      
Sbjct: 106 YLSKNQLKELPEKMPKT---LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 264 IPSSM-SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTN 320
           I +     MK+L  + ++  N +  +P+       SL+ L L  N +            N
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLPP---SLTELHLDGNKITKVDAASLKGLNN 217

Query: 321 LCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC 380
           L  L L+ N  S      L+    L EL L+NN L  ++P    +   +Q + +  N + 
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

Query: 381 GSVPSSF-------NLSSLRRLYMHMNAFNGSI--PGALRRSLSLTVLDLRDN 424
               + F         +S   + +  N        P   R       + L + 
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (258), Expect = 8e-25
 Identities = 59/334 (17%), Positives = 114/334 (34%), Gaps = 67/334 (20%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNS 137
               +LDL +N++T        N+K+L  L L +N                         
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK------------------------ 87

Query: 138 LVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQ 197
           + KI    F  L   +L+ L L    L+ LP  + +   L+ + +  N++  +    +  
Sbjct: 88  ISKISPGAFAPLV--KLERLYLSKNQLKELPEKMPKT--LQELRVHENEITKV-RKSVFN 142

Query: 198 NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSE 257
              ++  + L  N L                       S  +     + + +L  + +++
Sbjct: 143 GLNQMIVVELGTNPLK----------------------SSGIENGAFQGMKKLSYIRIAD 180

Query: 258 NGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVF 315
                 IP  +     L  L L  N  + ++    L G  +L+ L LS N +        
Sbjct: 181 TNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 316 PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG------QIPPWFGNLSGL 369
            N+ +L  L+LNNN    K+  GL+    +  + L NN +          P +    +  
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 370 QFLDISENQLCGSV--PSSF-NLSSLRRLYMHMN 400
             + +  N +      PS+F  +     + +   
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (256), Expect = 1e-24
 Identities = 64/294 (21%), Positives = 115/294 (39%), Gaps = 34/294 (11%)

Query: 54  KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
            +   LDL  N +         NL ++  L L +N+++       A +  LE L L  N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 114 FEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQ--ALPSI 170
            + L      K    LQ  ++  N + K+    F GL   Q+  + L    L+   + + 
Sbjct: 112 LKEL-PEKMPKT---LQELRVHENEITKVRKSVFNGLN--QMIVVELGTNPLKSSGIENG 165

Query: 171 LLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQ-LPSSKHD 224
             Q +  L +I ++   +  I P  L  +   L  L+L  N ++     + + L +    
Sbjct: 166 AFQGMKKLSYIRIADTNITTI-PQGLPPS---LTELHLDGNKITKVDAASLKGLNN---- 217

Query: 225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF 284
           L +L +S N  S  +        P L  L+L+ N    ++P  +++ K ++ + L +NN 
Sbjct: 218 LAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

Query: 285 S-----GELPRQFLSGCFSLSFLSLSDNHLQGEVV----FPNSTNLCWLYLNNN 329
           S        P  + +   S S +SL  N +Q   +    F        + L N 
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.2 bits (240), Expect = 2e-22
 Identities = 63/281 (22%), Positives = 110/281 (39%), Gaps = 42/281 (14%)

Query: 153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
            L+ +   +  L+ +P  L    D   +DL +NK+  I      +N   L TL L+NN +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKI 88

Query: 213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK 272
           S                        ++       L +L  L LS+N  +  +P  M   K
Sbjct: 89  S------------------------KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--K 121

Query: 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV----FPNSTNLCWLYLNN 328
            L+ L +  N  + ++ +   +G   +  + L  N L+   +    F     L ++ + +
Sbjct: 122 TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPSSF 387
            + +  I  GL    SL EL L  N +  ++       L+ L  L +S N +      S 
Sbjct: 181 TNIT-TIPQGLP--PSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 388 -NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
            N   LR L+++ N     +PG L     + V+ L +N  S
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.1 bits (206), Expect = 7e-18
 Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 28/222 (12%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNL--QSVIANIKSLEYLSLD 110
            K L EL + +N +        + L  + V++L +N L  +         +K L Y+ + 
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 111 DNNF----EGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
           D N     +GL           L    L  N + K++     GL    L  L L   S+ 
Sbjct: 180 DTNITTIPQGLP--------PSLTELHLDGNKITKVDAASLKGLN--NLAKLGLSFNSIS 229

Query: 166 ALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS-------GNFQ 217
           A+ +  L     LR + L++NKL  + P   L ++  +  +YL NN++S           
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKV-PGG-LADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 218 LPSSKHDLLRLDISHNKFSC-QLPGNMGKILPELLSLNLSEN 258
             + K     + +  N     ++  +  + +    ++ L   
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (274), Expect = 2e-26
 Identities = 62/259 (23%), Positives = 104/259 (40%), Gaps = 18/259 (6%)

Query: 153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
           Q   +      L  +P  +    + R+++L  N +Q I  +   ++   L+ L L  NS+
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSI 111

Query: 213 S----GNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS 267
                G F  L S    L  L++  N  +  +P    + L +L  L L  N  E  IPS 
Sbjct: 112 RQIEVGAFNGLAS----LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSY 165

Query: 268 M-SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL 326
             + +  L  LDL        +      G F+L +L+L   +++          L  L +
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225

Query: 327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCGSVPS 385
           + NHF           +SL +L + N+ +   I    F  L+ L  L+++ N L      
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 386 SF-NLSSLRRLYMHMNAFN 403
            F  L  L  L++H N +N
Sbjct: 285 LFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 8e-22
 Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 36/257 (14%)

Query: 55  NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 114
           N   L+L +NN+    +    +L H++VL L  N +          + SL  L L DN  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW- 134

Query: 115 EGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQ 174
                                  L  I +  F  L   +L+ L LRN  ++++PS    +
Sbjct: 135 -----------------------LTVIPSGAFEYLS--KLRELWLRNNPIESIPSYAFNR 169

Query: 175 LD-LRFIDLSH-NKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH--DLLRLDI 230
           +  L  +DL    KL+ I      +    L  L L   ++     +P+      L  L++
Sbjct: 170 VPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEM 225

Query: 231 SHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290
           S N F  ++       L  L  L +  +       ++   +  L  L+L+ NN S  LP 
Sbjct: 226 SGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH 283

Query: 291 QFLSGCFSLSFLSLSDN 307
              +    L  L L  N
Sbjct: 284 DLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.6 bits (238), Expect = 1e-21
 Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 23/216 (10%)

Query: 53  LKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           L +L  L L +N++   +     + L  +  L+L  N LT         +  L  L L +
Sbjct: 98  LHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 112 NNFEGL--FSFNSLKNHSKLQVFKLS--NSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
           N  E +  ++FN + +   L    L     L  I    F GL    LK LNL  C+++ +
Sbjct: 157 NPIESIPSYAFNRVPS---LMRLDLGELKKLEYISEGAFEGLF--NLKYLNLGMCNIKDM 211

Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQ-LPSSK 222
           P+ L   + L  +++S N    I         + L  L+++N+ +S      F  L S  
Sbjct: 212 PN-LTPLVGLEELEMSGNHFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS-- 267

Query: 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSEN 258
             L+ L+++HN  S  LP ++   L  L+ L+L  N
Sbjct: 268 --LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 4e-21
 Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 8/208 (3%)

Query: 224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN 283
           +   L++  N     +  +  + L  L  L L  N        + + +  L +L+L  N 
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 284 FSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDG-LS 340
            +  +P         L  L L +N ++      F    +L  L L        I +G   
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHM 399
              +L  L+L    +  +  P    L GL+ L++S N      P SF  LSSL++L++  
Sbjct: 194 GLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 400 NAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           +  +     A     SL  L+L  N  S
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISE 376
            +N  +L L  N+      D       L  L L  N +  QI    F  L+ L  L++ +
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFD 132

Query: 377 NQLCGSVPSS--FNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
           N L   +PS     LS LR L++  N        A  R  SL  LDL + 
Sbjct: 133 NWL-TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 6/112 (5%)

Query: 318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISE 376
           S     +       S ++  G+   T    L+L  N +   I    F +L  L+ L +  
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPSNTR--YLNLMENNI-QMIQADTFRHLHHLEVLQLGR 108

Query: 377 NQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           N +      +F  L+SL  L +  N       GA      L  L LR+N   
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 53  LKNLVELDLSKNNLYGHLSPC-LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           L +L +L +  + +   +       L  +  L+L+ N L+     +   ++ L  L L  
Sbjct: 241 LSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

Query: 112 NNF 114
           N +
Sbjct: 300 NPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (274), Expect = 2e-26
 Identities = 59/259 (22%), Positives = 102/259 (39%), Gaps = 18/259 (6%)

Query: 153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
           Q   +     +L+ +P  +    + R ++L  N++Q I      ++   L+ L L  N +
Sbjct: 44  QFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHI 100

Query: 213 S----GNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS 267
                G F  L +    L  L++  N+ +  +P      L +L  L L  N  E  IPS 
Sbjct: 101 RTIEIGAFNGLAN----LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSY 154

Query: 268 M-SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL 326
             + +  L  LDL        +      G  +L +L+L+  +L+          L  L L
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDL 214

Query: 327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCGSVPS 385
           + NH S            L +L +  + +   I    F NL  L  ++++ N L      
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLLPHD 273

Query: 386 SF-NLSSLRRLYMHMNAFN 403
            F  L  L R+++H N +N
Sbjct: 274 LFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.3 bits (245), Expect = 1e-22
 Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 14/235 (5%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-N 136
           T+ ++L+L  NQ+     +   +++ LE L L  N+   +    +    + L   +L  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDN 122

Query: 137 SLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLD-LRFIDLSH-NKLQGIFPSW 194
            L  I    F  L   +LK L LRN  ++++PS    ++  LR +DL    +L  I    
Sbjct: 123 RLTTIPNGAFVYLS--KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-SEG 179

Query: 195 LLQNNTKLDTLYLLNNSLSGNFQLPSSKH--DLLRLDISHNKFSCQLPGNMGKILPELLS 252
             +  + L  L L   +L    ++P+      L  LD+S N  S  +     + L  L  
Sbjct: 180 AFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQK 235

Query: 253 LNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 307
           L + ++  +    ++   ++ L  ++L+ NN +  LP    +    L  + L  N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.8 bits (236), Expect = 2e-21
 Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 25/217 (11%)

Query: 53  LKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           L++L  L LS+N++   +     + L ++  L+L  N+LT         +  L+ L L +
Sbjct: 87  LRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 112 NNFEGL--FSFNSLKNHSKLQVFKLS--NSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
           N  E +  ++FN + +   L+   L     L  I    F GL    L+ LNL  C+L+ +
Sbjct: 146 NPIESIPSYAFNRIPS---LRRLDLGELKRLSYISEGAFEGLS--NLRYLNLAMCNLREI 200

Query: 168 PSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQ-LPSS 221
           P+  L  L  L  +DLS N L  I      Q    L  L+++ + +       F  L S 
Sbjct: 201 PN--LTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS- 256

Query: 222 KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSEN 258
              L+ ++++HN  +  LP ++   L  L  ++L  N
Sbjct: 257 ---LVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.5 bits (230), Expect = 1e-20
 Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 11/209 (5%)

Query: 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282
           +   ++         ++P     I      LNL EN  +    +S   ++ LE L LS N
Sbjct: 43  NQFSKVICVRKNLR-EVPDG---ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL- 339
           +    +     +G  +L+ L L DN L       F   + L  L+L NN     I     
Sbjct: 99  HIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 340 SKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMH 398
           ++  SL  LDL        I    F  LS L++L+++   L   +P+   L  L  L + 
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPNLTPLIKLDELDLS 215

Query: 399 MNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
            N  +   PG+ +  + L  L +  ++  
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.3 bits (227), Expect = 3e-20
 Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 8/208 (3%)

Query: 224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN 283
           +   L++  N+    +  N  K L  L  L LS N        + + +  L +L+L  N 
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 284 FSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDG-LS 340
            +  +P         L  L L +N ++      F    +L  L L        I +G   
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHM 399
             ++L  L+L+   L  +  P    L  L  LD+S N L    P SF  L  L++L+M  
Sbjct: 183 GLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 400 NAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           +        A     SL  ++L  N  +
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 53  LKNLVELDLSKNNLYGHLSPC-LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           L +L +L + ++ +   +      NL  +  ++L+ N LT     +   +  LE + L  
Sbjct: 230 LMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 112 NNF 114
           N +
Sbjct: 289 NPW 291

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 1e-25
 Identities = 53/333 (15%), Positives = 97/333 (29%), Gaps = 39/333 (11%)

Query: 76  NLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS 135
           + +  + L    +     L+     +   +     D N           N +  Q+   +
Sbjct: 10  HSSGRENLYFQGST---ALRPYHDVLSQWQRHYNADRNRWHSAW--RQANSNNPQIETRT 64

Query: 136 NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWL 195
              +K   +      +    AL LR+  L   P    +   L+ + +    L  +  +  
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-- 122

Query: 196 LQNNTKLDTLYLLNNSLSGNFQLPSSK---HDLLRLDISHNKFSCQLPGNMGKILPELLS 252
           +Q    L+TL L  N L     LP+S    + L  L I       +LP  +         
Sbjct: 123 MQQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTELPEPLAST------ 173

Query: 253 LNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 312
                             +  L+SL L        LP    +   +L  L + ++ L   
Sbjct: 174 ----------DASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA- 220

Query: 313 VVFPNS----TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSG 368
                +      L  L L                  L  L L +      +P     L+ 
Sbjct: 221 --LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 369 LQFLDISENQLCGSVPSSF-NLSSLRRLYMHMN 400
           L+ LD+        +PS    L +   + +  +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 3e-25
 Identities = 51/288 (17%), Positives = 95/288 (32%), Gaps = 26/288 (9%)

Query: 153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
           Q +     + +            + +    +   L+                L L +  L
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 213 SGNFQLPSSKHD---LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMS 269
               Q P        L  + I       +LP  M +    L +L L+ N     +P+S++
Sbjct: 94  P---QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIA 147

Query: 270 EMKRLESLDLSSNNFSGELPRQF--------LSGCFSLSFLSLSDNHLQGEVVFPNS--- 318
            + RL  L + +     ELP             G  +L  L L    ++     P S   
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIAN 204

Query: 319 -TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISEN 377
             NL  L + N+  S  +   +     L ELDL         PP FG  + L+ L + + 
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 378 QLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
               ++P     L+ L +L +        +P  + +  +  ++ +  +
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 3e-19
 Identities = 48/262 (18%), Positives = 98/262 (37%), Gaps = 31/262 (11%)

Query: 49  GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
                   V L+L    L          L+H++ + + +  L   L   +     LE L+
Sbjct: 76  EDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLT 133

Query: 109 LDDNNFEGL-FSFNSLKNHSKLQVFKLS--NSLVKI--------ETEEFPGLPEYQLKAL 157
           L  N    L  S  SL     L+   +     L ++         + E  GL    L++L
Sbjct: 134 LARNPLRALPASIASLNR---LRELSIRACPELTELPEPLASTDASGEHQGLV--NLQSL 188

Query: 158 NLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF- 216
            L    +++LP+ +    +L+ + + ++ L  + P+  + +  KL+ L L   +   N+ 
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELDLRGCTALRNYP 246

Query: 217 ----QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK 272
                       L RL +        LP ++ + L +L  L+L       R+PS ++++ 
Sbjct: 247 PIFGGRAP----LKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 273 RLESLDLSSNNFSGELPRQFLS 294
               + +   +   +L +    
Sbjct: 302 ANCIILV-PPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 28/217 (12%), Positives = 64/217 (29%), Gaps = 25/217 (11%)

Query: 225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF 284
              L    +         + +      + + +            +     +    +    
Sbjct: 14  RENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIETRTGRAL 68

Query: 285 SGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS----TNLCWLYLNNNHFSGKIQDGLS 340
                    +       L L    L     FP+     ++L  + ++      ++ D + 
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF----------NLS 390
           +   L  L L+ N L   +P    +L+ L+ L I        +P              L 
Sbjct: 125 QFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 391 SLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           +L+ L +       S+P ++    +L  L +R++  S
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (262), Expect = 1e-24
 Identities = 91/376 (24%), Positives = 143/376 (38%), Gaps = 53/376 (14%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
              L  L +S N L     P L N + +K++D+ +N L      +     SLE+++  +N
Sbjct: 130 PPLLEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK----KLPDLPPSLEFIAAGNN 183

Query: 113 NFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILL 172
             E L    +L     L      N+ +K    + P LP   L+++   N  L+ LP +  
Sbjct: 184 QLEELPELQNLPF---LTAIYADNNSLK----KLPDLP-LSLESIVAGNNILEELPELQN 235

Query: 173 QQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISH 232
               L  I   +N L+ + P         L+ L + +N L+    LP     L  LD+S 
Sbjct: 236 LPF-LTTIYADNNLLKTL-PDLP----PSLEALNVRDNYLT---DLPELPQSLTFLDVSE 286

Query: 233 NKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF 292
           N FS  L     ++ P L  LN S N     I S       LE L++S+N    ELP   
Sbjct: 287 NIFS-GLS----ELPPNLYYLNASSN----EIRSLCDLPPSLEELNVSNNKLI-ELP--- 333

Query: 293 LSGCFSLSFLSLSDNHLQGEVVFPNS-TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS 351
            +    L  L  S NHL      P    NL  L++  N    +  D      S+ +L ++
Sbjct: 334 -ALPPRLERLIASFNHLA---EVPELPQNLKQLHVEYNPLR-EFPDIPE---SVEDLRMN 385

Query: 352 NNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALR 411
           ++    ++P    NL   + L +  N L    P      S+  L M+          A  
Sbjct: 386 SH--LAEVPELPQNL---KQLHVETNPLR-EFPDI--PESVEDLRMNSERVVDPYEFAHE 437

Query: 412 RSLSLTVLDLRDNEFS 427
            +  L       +   
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 99.3 bits (248), Expect = 8e-23
 Identities = 73/388 (18%), Positives = 126/388 (32%), Gaps = 57/388 (14%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG---------NLQSVIAN 100
              +K+  E   + +    +  P       + V  L                 L S+   
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89

Query: 101 IKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR 160
              LE L    N+   L      ++   L V   +             LP   L+ L + 
Sbjct: 90  PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLK-------ALSDLPP-LLEYLGVS 139

Query: 161 NCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 220
           N  L+ LP +      L+ ID+ +N L+ + P         L+ +   NN L    +L +
Sbjct: 140 NNQLEKLPEL-QNSSFLKIIDVDNNSLKKL-PDLP----PSLEFIAAGNNQLEELPELQN 193

Query: 221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS 280
               L  +   +N    +LP         L S+    N  E      +  +  L ++   
Sbjct: 194 LPF-LTAIYADNNSLK-KLPDLPLS----LESIVAGNNILE--ELPELQNLPFLTTIYAD 245

Query: 281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGL 339
           +N     LP        SL  L++ DN+L     +  + T L       +  S       
Sbjct: 246 NNLLK-TLP----DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP---- 296

Query: 340 SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHM 399
               +L  L+ S+N    +I         L+ L++S N+L   +P+      L RL    
Sbjct: 297 ---PNLYYLNASSN----EIRSLCDLPPSLEELNVSNNKLI-ELPAL--PPRLERLIASF 346

Query: 400 NAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           N     +P   +   +L  L +  N   
Sbjct: 347 NHLA-EVPELPQ---NLKQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 65/359 (18%), Positives = 119/359 (33%), Gaps = 50/359 (13%)

Query: 69  HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSK 128
            ++P   + T ++     S+ LT  +     N+KS        + +E      + +    
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE---- 56

Query: 129 LQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQ 188
                      ++         + Q   L L N  L +LP +      L  +  S N L 
Sbjct: 57  ---------QREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLT 104

Query: 189 GIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILP 248
            +      Q+   L        +LS    LP     L  L +S+N+   +LP        
Sbjct: 105 ELPEL--PQSLKSLLVDNNNLKALS---DLPPL---LEYLGVSNNQLE-KLPELQN--SS 153

Query: 249 ELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNH 308
            L  +++  N  + ++P        LE +   +N    ELP   L     L+ +   +N 
Sbjct: 154 FLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP--ELQNLPFLTAIYADNNS 206

Query: 309 LQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSG 368
           L  + +     +L  +   NN         L     L  +   NN+L   +P    +   
Sbjct: 207 L--KKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLL-KTLPDLPPS--- 258

Query: 369 LQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           L+ L++ +N L        +L+ L       +  +   P       +L  L+   NE  
Sbjct: 259 LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR 310

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 45/211 (21%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-------------NLQSVI 98
              +L  L++  N L   L     +LT + V +   + L+               ++S+ 
Sbjct: 255 LPPSLEALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313

Query: 99  ANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALN 158
               SLE L++ +N    L +        +L+    S + +     E P LP+  LK L+
Sbjct: 314 DLPPSLEELNVSNNKLIELPA-----LPPRLERLIASFNHLA----EVPELPQ-NLKQLH 363

Query: 159 LRNCSLQALPSIL--LQQLD--------------LRFIDLSHNKLQGIFPSWLLQNNTKL 202
           +    L+  P I   ++ L               L+ + +  N L+  FP         +
Sbjct: 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES----V 418

Query: 203 DTLYLLNNSLSGNFQLPSSKHDLLRLDISHN 233
           + L + +  +   ++      D L  D+  +
Sbjct: 419 EDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (257), Expect = 1e-24
 Identities = 57/286 (19%), Positives = 102/286 (35%), Gaps = 26/286 (9%)

Query: 154 LKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
              L+L+N  +  L     + L  L  + L +NK+  I          KL  LY+  N L
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYISKNHL 114

Query: 213 SGNFQLPSSK-HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGF-EGRIPSSMSE 270
               ++P +    L+ L I  N+   ++P  +   L  +  + +  N            +
Sbjct: 115 V---EIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 271 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNN 328
             +L  L +S    +  +P+       +L+ L L  N +Q          + L  L L +
Sbjct: 171 GLKLNYLRISEAKLT-GIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 329 NHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL-------C 380
           N     I++G LS   +L EL L NN L  ++P    +L  LQ + +  N +        
Sbjct: 227 NQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284

Query: 381 GSVPSSFNLSSLRRLYMHMN--AFNGSIPGALRRSLSLTVLDLRDN 424
             V      +    + +  N   +    P   R       +   + 
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (251), Expect = 7e-24
 Identities = 60/293 (20%), Positives = 113/293 (38%), Gaps = 33/293 (11%)

Query: 54  KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
            +   LDL  N++          L H+  L L +N+++   +   + ++ L+ L +  N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 114 FEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQ--ALPSI 170
              +   N   +   L   ++  N + K+    F GL    +  + +    L+       
Sbjct: 114 LVEI-PPNLPSS---LVELRIHDNRIRKVPKGVFSGLR--NMNCIEMGGNPLENSGFEPG 167

Query: 171 LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQ-LPSSKHDL 225
               L L ++ +S  KL GI P  L +    L+ L+L +N +      +          L
Sbjct: 168 AFDGLKLNYLRISEAKLTGI-PKDLPET---LNELHLDHNKIQAIELEDLLRYSK----L 219

Query: 226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS 285
            RL + HN+    +       LP L  L+L  N    R+P+ + ++K L+ + L +NN +
Sbjct: 220 YRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

Query: 286 GELPRQFLSGCF-----SLSFLSLSDNHLQGEVV----FPNSTNLCWLYLNNN 329
                 F    F       + +SL +N +    V    F   T+   +   N 
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 60/280 (21%), Positives = 105/280 (37%), Gaps = 41/280 (14%)

Query: 153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
            L+ +   +  L+A+P  +    D   +DL +N +  +      +    L  L L+NN +
Sbjct: 34  HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKI 90

Query: 213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK 272
           S                I    FS          L +L  L +S+N     IP ++    
Sbjct: 91  S---------------KIHEKAFSP---------LRKLQKLYISKNHLV-EIPPNLP--S 123

Query: 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS---TNLCWLYLNNN 329
            L  L +  N    ++P+   SG  +++ + +  N L+     P +     L +L ++  
Sbjct: 124 SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 330 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCGSVPSSF- 387
             +  I   L    +L EL L +N +   I        S L  L +  NQ+      S  
Sbjct: 183 KLT-GIPKDL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 388 NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
            L +LR L++  N  +  +P  L     L V+ L  N  +
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 38/217 (17%), Positives = 79/217 (36%), Gaps = 19/217 (8%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT-GNLQSVIANIKSLEYLSLDD 111
             +LVEL +  N +        S L ++  +++  N L     +    +   L YL + +
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
               G+           L    L  N +  IE E+       +L  L L +  ++ + + 
Sbjct: 182 AKLTGI----PKDLPETLNELHLDHNKIQAIELEDLLRYS--KLYRLGLGHNQIRMIENG 235

Query: 171 LLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS-------GNFQLPSSK 222
            L  L  LR + L +NKL  + P+  L +   L  +YL  N+++               +
Sbjct: 236 SLSFLPTLRELHLDNNKLSRV-PAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293

Query: 223 HDLLRLDISHNKFSC-QLPGNMGKILPELLSLNLSEN 258
                + + +N     ++     + + + L++     
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 53  LKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
            + L EL L  N +   +    L   + +  L L  NQ+       ++ + +L  L LD+
Sbjct: 192 PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEY----QLKALNLRN--CSL 164
           N    + +   L +   LQV  L  N++ K+   +F  +           ++L N     
Sbjct: 251 NKLSRVPA--GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 165 QALPSILLQQL-DLRFIDLSHNK 186
             +     + + D   I   + K
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNYK 331

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (259), Expect = 3e-24
 Identities = 69/396 (17%), Positives = 126/396 (31%), Gaps = 26/396 (6%)

Query: 53  LKNLVELDLSKNNLYG-HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
             NL  LDLS N      +     N++ +K L LS+  L  +    IA++   + L +  
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 112 NNFEGLFSFNSLKN--------------HSKLQVFKLSNSLVKIETEEFPGLPEYQLKAL 157
             +        L++                   +     ++  +E      + E    + 
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 158 NLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ 217
            L   + +   +  L  L L  I+ + N    I                +          
Sbjct: 209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267

Query: 218 LPSSKHDLLRLDISHNKFSCQ--LPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLE 275
              S   L  L I              + +I   +   N + +G         S++    
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327

Query: 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ----GEVVFPNSTNLCWLYLNNNHF 331
            LD S+N  + +   +       L  L L  N L+       +     +L  L ++ N  
Sbjct: 328 HLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386

Query: 332 SGKIQDGL-SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLS 390
           S   + G  S   SLL L++S+N+L      +      ++ LD+  N++         L 
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNIL--TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE 444

Query: 391 SLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
           +L+ L +  N       G   R  SL  + L  N +
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.2 bits (229), Expect = 3e-20
 Identities = 64/398 (16%), Positives = 136/398 (34%), Gaps = 30/398 (7%)

Query: 54  KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
           +    L++S+N +    +  + +L+ +++L +S N++     SV    + LEYL L  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 114 FEGLFSFNSLKNHSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNLRNCSLQALPSILL 172
              + S +   N   L +    N+   +   +EF  +   QLK L L    L+    + +
Sbjct: 81  LVKI-SCHPTVNLKHLDL--SFNAFDALPICKEFGNMS--QLKFLGLSTTHLEKSSVLPI 135

Query: 173 QQLDLRFIDLSHNKLQ------GIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
             L++  + L   +             +  ++   +       + +        +  +L 
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 227 RL------DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS 280
            +      +      S          L  L   N+            +     +    +S
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 281 SNNFSGELPRQFLSGCF----SLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGK 334
           +    G+L  +          +LS   +  +        ++   +N+       +     
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF----NLS 390
                SK +  L LD SNN+L   +    G+L+ L+ L +  NQL   +         + 
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMK 374

Query: 391 SLRRLYMHMNAFNGSIPGALRRSL-SLTVLDLRDNEFS 427
           SL++L +  N+ +            SL  L++  N  +
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.4 bits (180), Expect = 3e-14
 Identities = 39/248 (15%), Positives = 82/248 (33%), Gaps = 12/248 (4%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
           +   V        ++  + L     +       ++L  + +  + S+        +    
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLR 160
            ++   +   +    +         S       S N L     E    L   +L+ L L+
Sbjct: 300 SNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT--ELETLILQ 356

Query: 161 NCSLQALP---SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL-SGNF 216
              L+ L     +  Q   L+ +D+S N +              L +L + +N L    F
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276
           +    +  +  LD+  NK    +P  + K L  L  LN++ N  +         +  L+ 
Sbjct: 417 RCLPPR--IKVLDLHSNKIK-SIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQK 472

Query: 277 LDLSSNNF 284
           + L +N +
Sbjct: 473 IWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 15/192 (7%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
             N+   + + +        C S ++    LD S+N LT  +     ++  LE L L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 113 NFEGLFSFNSL-KNHSKLQVFKLS-NSLVKIETEE-FPGLPEYQLKALNLRNCSLQALPS 169
             + L     +      LQ   +S NS+   E +          L +LN+ +  L     
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK--SLLSLNMSSNILTDTIF 416

Query: 170 ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQLPSSKHDL 225
             L    ++ +DL  NK++ I    +      L  L + +N L     G F   +S   L
Sbjct: 417 RCLPPR-IKVLDLHSNKIKSIPKQVV--KLEALQELNVASNQLKSVPDGIFDRLTS---L 470

Query: 226 LRLDISHNKFSC 237
            ++ +  N + C
Sbjct: 471 QKIWLHTNPWDC 482

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 54/321 (16%), Positives = 109/321 (33%), Gaps = 20/321 (6%)

Query: 1   MLSLAKPIIKKPQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELD 60
           ++           ++  K      ++ +       K +     +       +L NL   +
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 61  LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI--KSLEYLSLDD--NNFEG 116
           +            L   T +    +S+ +L G L     +    SL+ LS+    ++  G
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 117 LFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL- 175
                  +  S + +   + S  ++     P         L+  N  L          L 
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS-PFLHLDFSNNLLTDTVFENCGHLT 348

Query: 176 DLRFIDLSHNKLQGIFP-SWLLQNNTKLDTLYLLNNSLS-----GNFQLPSSKHDLLRLD 229
           +L  + L  N+L+ +   + +      L  L +  NS+S     G+     S   LL L+
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS---LLSLN 405

Query: 230 ISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELP 289
           +S N  +         + P +  L+L  N  +  IP  + +++ L+ L+++SN     +P
Sbjct: 406 MSSNILT---DTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460

Query: 290 RQFLSGCFSLSFLSLSDNHLQ 310
                   SL  + L  N   
Sbjct: 461 DGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 4/184 (2%)

Query: 246 ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 305
           +  +   LN+S+N       S +  + +L  L +S N     L          L +L LS
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS 77

Query: 306 DNHLQGEVVFPNSTNLCWLYLNNNHF-SGKIQDGLSKATSLLELDLSNNMLYGQIPPWFG 364
            N L  ++    + NL  L L+ N F +  I       + L  L LS   L         
Sbjct: 78  HNKLV-KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 365 NLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
           +L+  + L +              L       +H+          +      TV +L  +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 425 EFSG 428
               
Sbjct: 196 NIKC 199

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (250), Expect = 7e-24
 Identities = 61/264 (23%), Positives = 102/264 (38%), Gaps = 24/264 (9%)

Query: 81  KVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSN--- 136
             +  +S  LT    SV   I  S   L L+ N  + L         ++L    LS+   
Sbjct: 10  TEIRCNSKGLT----SVPTGIPSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNGL 64

Query: 137 SLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLL 196
           S     ++   G     LK L+L    +  + S  L    L  +D  H+ L+ +    + 
Sbjct: 65  SFKGCCSQSDFGTT--SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 197 QNNTKLDTLYLLNNSLS----GNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELL 251
            +   L  L + +        G F  L S    L  L ++ N F      ++   L  L 
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSS----LEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 252 SLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL-- 309
            L+LS+   E   P++ + +  L+ L++S NNF   L         SL  L  S NH+  
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMT 237

Query: 310 -QGEVVFPNSTNLCWLYLNNNHFS 332
            + + +    ++L +L L  N F+
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 9e-21
 Identities = 58/275 (21%), Positives = 93/275 (33%), Gaps = 54/275 (19%)

Query: 157 LNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF 216
           +   +  L ++P+ +        ++L  NKLQ +    +    T+L  L L +N LS   
Sbjct: 12  IRCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSNGLS--- 65

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276
                                            L  L+LS NG    + S+   +++LE 
Sbjct: 66  ----------FKGCCSQSDFG---------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGK 334
           LD   +N              +L +L +S  H +     +F   ++L  L +  N F   
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS--FNLSSL 392
               +                       F  L  L FLD+S+ QL   +  +   +LSSL
Sbjct: 166 FLPDI-----------------------FTELRNLTFLDLSQCQL-EQLSPTAFNSLSSL 201

Query: 393 RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           + L M  N F        +   SL VLD   N   
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 54/262 (20%), Positives = 85/262 (32%), Gaps = 53/262 (20%)

Query: 52  ELKNLVELDLSKNNLYGH--LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           +L  L +L LS N L      S      T +K LDLS N +   + S    ++ LE+L  
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
             +N + +  F+                        F  L    L  L++ +   +   +
Sbjct: 109 QHSNLKQMSEFSV-----------------------FLSLR--NLIYLDISHTHTRVAFN 143

Query: 170 ILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL 228
            +   L  L  + ++ N  Q  F   +      L  L L    L                
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------------- 188

Query: 229 DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288
                    QL       L  L  LN+S N F          +  L+ LD S N+     
Sbjct: 189 ---------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 289 PRQFLSGCFSLSFLSLSDNHLQ 310
            ++      SL+FL+L+ N   
Sbjct: 240 KQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.1 bits (206), Expect = 6e-18
 Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 17/194 (8%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQ-SVIANIKSLEYLSLDD 111
             +L  LDLS N +   +S     L  ++ LD   + L    + SV  ++++L YL +  
Sbjct: 77  TTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLS--NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
            +    F+       S L+V K++  +       + F  L    L  L+L  C L+ L  
Sbjct: 136 THTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR--NLTFLDLSQCQLEQLSP 192

Query: 170 ILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQ-LPSSKH 223
                L  L+ +++SHN    +  ++  +    L  L    N +        Q  PSS  
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS-- 249

Query: 224 DLLRLDISHNKFSC 237
            L  L+++ N F+C
Sbjct: 250 -LAFLNLTQNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 298 SLSFLSLSDNHLQGEVVFPN--STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 355
           S + +  +   L      P    ++   L L +N           K T L +L LS+N L
Sbjct: 8   SGTEIRCNSKGLT---SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 356 YGQ--IPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIP-GALR 411
             +          + L++LD+S N +  ++ S+F  L  L  L    +            
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 412 RSLSLTVLDLRDN 424
              +L  LD+   
Sbjct: 124 SLRNLIYLDISHT 136

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 83/430 (19%), Positives = 137/430 (31%), Gaps = 77/430 (17%)

Query: 54  KNLVELDLSKNNL-YGHLSPCLSNLTHIKVLDLSSNQLT----GNLQSVIANIKSLEYLS 108
            ++  LD+    L     +  L  L   +V+ L    LT     ++ S +    +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL---- 164
           L  N                     L +  V    +     P  +++ L+L+NC L    
Sbjct: 63  LRSNE--------------------LGDVGVHCVLQGL-QTPSCKIQKLSLQNCCLTGAG 101

Query: 165 -QALPSILLQQLDLRFIDLSHNKLQG----IFPSWLLQNNTKLDTLYLLNNSLSGN---- 215
              L S L     L+ + LS N L      +    LL    +L+ L L   SLS      
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 216 -FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPE----LLSLNLSENGFEGR----IPS 266
              +  +K D   L +S+N  +      + + L +    L +L L   G        +  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 267 SMSEMKRLESLDLSSNNFSGE----LPRQFLSGCFSLSFLSLSDNHLQGE------VVFP 316
            ++    L  L L SN         L    L     L  L + +  +  +       V  
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 317 NSTNLCWLYLNNNHFSGK----IQDGLSKA-TSLLELDLSNNML----YGQIPPWFGNLS 367
              +L  L L  N    +    + + L +    L  L + +                   
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 368 GLQFLDISENQLCGSVPSSF------NLSSLRRLYMHMNAFN----GSIPGALRRSLSLT 417
            L  L IS N+L  +             S LR L++     +     S+   L  + SL 
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401

Query: 418 VLDLRDNEFS 427
            LDL +N   
Sbjct: 402 ELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.5 bits (202), Expect = 6e-17
 Identities = 70/356 (19%), Positives = 125/356 (35%), Gaps = 57/356 (16%)

Query: 55  NLVELDLSKNNL----YGHLSPCLSNLTHIKVLDLSSNQLTGN-----LQSVIANIKSLE 105
            + +L L    L     G LS  L  L  ++ L LS N L         + ++     LE
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 106 YLSLDDNNF--EGLFSFNS-LKNHSKLQVFKLSNSLVKIETEEFPGL------PEYQLKA 156
            L L+  +          S L+     +   +SN+   I       L         QL+A
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN--DINEAGVRVLCQGLKDSPCQLEA 203

Query: 157 LNLRNCSL-----QALPSILLQQLDLRFIDLSHNKLQGIFPSWL----LQNNTKLDTLYL 207
           L L +C +     + L  I+  +  LR + L  NKL  +  + L    L  +++L TL++
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 208 LNNSLSGN-----FQLPSSKHDLLRLDISHNKFS----CQLPGNMGKILPELLSLNLSEN 258
               ++        ++  +K  L  L ++ N+        L   + +   +L SL +   
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 259 GFEGR----IPSSMSEMKRLESLDLSSNNFSGE----LPRQFLSGCFSLSFLSLSDNHLQ 310
            F         S +++ + L  L +S+N         L +        L  L L+D  + 
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 311 GE------VVFPNSTNLCWLYLNNNHFSGKIQDGLSKA-----TSLLELDLSNNML 355
                        + +L  L L+NN         L ++       L +L L +   
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 46/268 (17%), Positives = 81/268 (30%), Gaps = 39/268 (14%)

Query: 199 NTKLDTLYLLNNSLS--GNFQLPSSKHDLLRLDISHNKFS---CQLPGNMGKILPELLSL 253
           +  + +L +    LS     +L         + +     +   C+   +  ++ P L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 254 NLSENGFEGRIPSSMSEM-----KRLESLDLSSNNFSGELPRQF---LSGCFSLSFLSLS 305
           NL  N         + +       +++ L L +   +G         L    +L  L LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 306 DNHLQGEVVF-------PNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLELDLSNNM 354
           DN L    +             L  L L     S      +   L       EL +SNN 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 355 LYGQIPPWFG-----NLSGLQFLDISENQL----CGSVPSSF-NLSSLRRLYMHMNAFNG 404
           +              +   L+ L +    +    C  +     + +SLR L +  N    
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 405 S-----IPGALRRSLSLTVLDLRDNEFS 427
                  PG L  S  L  L + +   +
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGIT 269

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 59/266 (22%), Positives = 96/266 (36%), Gaps = 72/266 (27%)

Query: 49  GICELKNLVELDLSKNNLYG----HLSP-CLSNLTHIKVLDLSSNQLT----GNLQSVIA 99
            +    +L EL L  N L       L P  L   + ++ L +    +T    G+L  V+ 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 100 NIKSLEYLSLDDNNF--EGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKAL 157
             +SL+ LSL  N    EG                 L  +L++         P  QL++L
Sbjct: 282 AKESLKELSLAGNELGDEG--------------ARLLCETLLE---------PGCQLESL 318

Query: 158 NLRNCSL-----QALPSILLQQLDLRFIDLSHNKLQG----IFPSWLLQNNTKLDTLYLL 208
            +++CS          S+L Q   L  + +S+N+L+          L Q  + L  L+L 
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378

Query: 209 NNSLSGN------FQLPSSKHDLLRLDISHNKFSCQLPGNMG-KILPELLSLNLSENGFE 261
           +  +S +        L ++   L  LD+S+N       G+ G   L E +          
Sbjct: 379 DCDVSDSSCSSLAATLLANHS-LRELDLSNNCL-----GDAGILQLVESVRQPGC----- 427

Query: 262 GRIPSSMSEMKRLESLDLSSNNFSGE 287
                       LE L L    +S E
Sbjct: 428 -----------LLEQLVLYDIYWSEE 442

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.5 bits (243), Expect = 1e-22
 Identities = 49/280 (17%), Positives = 96/280 (34%), Gaps = 31/280 (11%)

Query: 154 LKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
           +K+L+L N  +  + +  LQ+  +L+ + L+ N +  I       +   L+ L L  N L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYL 112

Query: 213 S----GNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS 267
           S      F+ L S    L  L++  N +      ++   L +L  L +       +I   
Sbjct: 113 SNLSSSWFKPLSS----LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 268 M-SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWL 324
             + +  LE L++ +++       + L    ++S L L         E+    ++++  L
Sbjct: 169 DFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 325 YLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP 384
            L +                        + L              + + I++  L   + 
Sbjct: 228 ELRDTDLDT----------------FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 385 SSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
               +S L  L    N       G   R  SL  + L  N
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.0 bits (234), Expect = 2e-21
 Identities = 48/244 (19%), Positives = 93/244 (38%), Gaps = 17/244 (6%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
             NL  L L+ N +        S+L  ++ LDLS N L+    S    + SL +L+L  N
Sbjct: 75  CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134

Query: 113 NFEGLFSFNSLKNHSKLQVFKLSN--SLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
            ++ L   +   + +KLQ+ ++ N  +  KI+ ++F GL    L+ L +    LQ+    
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT--FLEELEIDASDLQSYEPK 192

Query: 171 LLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN---------FQLPS 220
            L+ +  +  + L   +   +     +   + ++ L L +  L                 
Sbjct: 193 SLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS 280
            K     + I+       +       +  LL L  S N  +         +  L+ + L 
Sbjct: 252 KKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

Query: 281 SNNF 284
           +N +
Sbjct: 310 TNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 66/339 (19%), Positives = 119/339 (35%), Gaps = 89/339 (26%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNS 137
             +K LDLS+N++T    S +    +L+ L L  N                         
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------------------------ 87

Query: 138 LVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLL 196
           +  IE + F  L    L+ L+L    L  L S   + L  L F++L  N  + +  + L 
Sbjct: 88  INTIEEDSFSSLG--SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLS 256
            + TKL  L + N                                             + 
Sbjct: 146 SHLTKLQILRVGN-----MDTFTK----------------------------------IQ 166

Query: 257 ENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVV 314
              F G        +  LE L++ +++       + L    ++S L L         E+ 
Sbjct: 167 RKDFAG--------LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 315 FPNSTNLCWLYLNNNH--------FSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNL 366
              ++++  L L +           S    + L K  +   + +++  L+ Q+      +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 367 SGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFN 403
           SGL  L+ S NQL  SVP      L+SL+++++H N ++
Sbjct: 277 SGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 58/275 (21%), Positives = 112/275 (40%), Gaps = 24/275 (8%)

Query: 158 NLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG-NF 216
              + SL ++PS L +   ++ +DLS+N++  I  +  LQ    L  L L +N ++    
Sbjct: 37  KGSSGSLNSIPSGLTE--AVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM-SEMKRLE 275
              SS   L  LD+S+N  S  L  +  K L  L  LNL  N ++    +S+ S + +L+
Sbjct: 94  DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSG 333
            L + + +   ++ R+  +G   L  L +  + LQ        +  N+  L L+      
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212

Query: 334 KIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLR 393
            ++  +   +S+  L+L +            +L    F ++S     G   S     + R
Sbjct: 213 LLEIFVDVTSSVECLELRDT-----------DLDTFHFSELST----GETNSLIKKFTFR 257

Query: 394 RLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
            + +   +    +   L +   L  L+   N+   
Sbjct: 258 NVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 13/188 (6%)

Query: 247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 306
                    S       IPS ++E   ++SLDLS+N  +  +    L  C +L  L L+ 
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGLTE--AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTS 85

Query: 307 NHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPP-- 361
           N +    E  F +  +L  L L+ N+ S  +        +SL  L+L  N     +    
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPY-KTLGETS 143

Query: 362 WFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVL 419
            F +L+ LQ L +        +       L+ L  L +  +      P +L+   +++ L
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

Query: 420 DLRDNEFS 427
            L   +  
Sbjct: 204 ILHMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 16/166 (9%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L  L EL++  ++L  +    L ++ ++  L L   Q    L+  +    S+E L L D 
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 113 NFEGL-------FSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
           + +            NSL      +  K+++  +    +    +    L  L      L+
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS--GLLELEFSRNQLK 290

Query: 166 ALPSILLQQL-DLRFIDLSHNKLQ------GIFPSWLLQNNTKLDT 204
           ++P  +  +L  L+ I L  N              WL +N+ K   
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 336

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 8e-11
 Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 22/200 (11%)

Query: 53  LKNLVELDLSKNNLYGHLSP--CLSNLTHIKVLDLSSNQLTGNLQS-VIANIKSLEYLSL 109
           L +L  L+L  N     L      S+LT +++L + +      +Q    A +  LE L +
Sbjct: 123 LSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLP---EYQLKALNLRNCSLQ 165
           D ++ +      SLK+   +    L     + +              +L+  +L      
Sbjct: 182 DASDLQSYEP-KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 166 ALPSI----LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQ 217
            L +     L+++   R + ++   L  +    LL   + L  L    N L     G F 
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMK--LLNQISGLLELEFSRNQLKSVPDGIFD 298

Query: 218 LPSSKHDLLRLDISHNKFSC 237
             +S   L ++ +  N + C
Sbjct: 299 RLTS---LQKIWLHTNPWDC 315

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.4 bits (245), Expect = 2e-22
 Identities = 76/396 (19%), Positives = 136/396 (34%), Gaps = 28/396 (7%)

Query: 53  LKNLVELDLSKNNL-YGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK------SLE 105
           + +L  LDLS N+     +     NLT +  L LS+ +        +A++        L 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
              +     E L   N+   H       L +  V +       L    +K  +     L 
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239

Query: 166 ALPSILLQQLDLRFIDLSHNKLQ--GIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH 223
              S L +   L  + L H +         +       ++ L + N +++         +
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299

Query: 224 DLLRL------DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESL 277
               L       + +  F       +  +  E+    LS +                  L
Sbjct: 300 SETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 278 DLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHF----S 332
           + + N F+  + +   S    L  L L  N L+    V   + N+  L   +       S
Sbjct: 359 NFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417

Query: 333 GKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSS 391
                  + A S+L L+LS+NML G +         ++ LD+  N++  S+P    +L +
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI-MSIPKDVTHLQA 474

Query: 392 LRRLYMHMNAFNGSIP-GALRRSLSLTVLDLRDNEF 426
           L+ L +  N    S+P G   R  SL  + L DN +
Sbjct: 475 LQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 61/368 (16%), Positives = 109/368 (29%), Gaps = 30/368 (8%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFS--FNSLKNHSKLQVFKLS 135
              K L LS N ++      I+ +  L  L L  N    L    F   ++   L+   +S
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD---LEYLDVS 108

Query: 136 -NSLVKIETEEFPGLPEYQLKALNLRNCSLQALP--SILLQQLDLRFIDLSHNKLQGIFP 192
            N L  I            L+ L+L       LP          L F+ LS  K + +  
Sbjct: 109 HNRLQNISCCPMA-----SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 193 SWLLQNNTKLDTLYLLNNSLSGNF--QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPEL 250
             +   +     L L++  + G     L      +L L    N             L  L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS------LSFLSL 304
              N+  N    +   +           L+      E   +     F       + +L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 305 SDNHLQGEVVFPNSTN-------LCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG 357
            +  +   +     T        L   ++ N  F    +   S    +    LS +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 358 QIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSL 416
                  + S   FL+ ++N    SV      L  L+ L +  N    +       + ++
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNM 402

Query: 417 TVLDLRDN 424
           + L+  D 
Sbjct: 403 SSLETLDV 410

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.0 bits (205), Expect = 3e-17
 Identities = 63/381 (16%), Positives = 120/381 (31%), Gaps = 30/381 (7%)

Query: 66  LYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGLFSFNSLK 124
           + G ++P  + L    ++D S+  LT     V  ++    + LSL  N+   L     + 
Sbjct: 21  IVGSMTPFSNELE--SMVDYSNRNLT----HVPKDLPPRTKALSLSQNSISEL-RMPDIS 73

Query: 125 NHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLS 183
             S+L+V +LS N +  ++   F       L+ L++ +  LQ +    +  L  R +DLS
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQ--DLEYLDVSHNRLQNISCCPMASL--RHLDLS 129

Query: 184 HNKLQGIFPSWLLQNNTKLDTLYLLNNSLS-------GNFQLPSSKHDLLRLDISHNKFS 236
            N    +       N TKL  L L              +  L     DL+   I   +  
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189

Query: 237 CQLPGNMGKILPELLSLNLSENG-FEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSG 295
                N   +       +L               ++  ++  D +       L       
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 296 C---FSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKAT-----SLLE 347
                +L  +  +         F     + +L + N   + +I       +     SL+ 
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 348 LDLSNNMLYGQIPPWFGNLSGLQFLDISENQL-CGSVPSSFNLSSLRRLYMHMNAFNGSI 406
             + N +        +   + +    +S +      +    + SS   L    N F  S+
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 407 PGALRRSLSLTVLDLRDNEFS 427
                    L  L L+ N   
Sbjct: 370 FQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 71/396 (17%), Positives = 117/396 (29%), Gaps = 52/396 (13%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-NLQSVIANIKSLEYLSLDD 111
            ++L  LD+S N L  ++S     +  ++ LDLS N      +     N+  L +L L  
Sbjct: 99  NQDLEYLDVSHNRL-QNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
             F  L     + +   L    L      I+  E   L       L+L           +
Sbjct: 156 AKFRQL-DLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213

Query: 172 ------LQQLDLRFIDLSHNKLQGIF-PSWLLQNNTKLDTLYLLNNSLSGN----FQLPS 220
                 L  L L  I L+    Q +      L     L  + L +   +           
Sbjct: 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273

Query: 221 SKHDLLRLDISHNKFS----CQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276
               +  L+I +   +     +        L  L+  ++    F     +  S    +  
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFS-- 332
             LS ++ +  +         S +FL+ + N     V         L  L L  N     
Sbjct: 334 KMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 333 GKIQDGLSKATSLLELDLSNNML-YGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSS 391
            K+       +SL  LD+S N L              +  L++S N L GSV        
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL---- 448

Query: 392 LRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
                                   + VLDL +N   
Sbjct: 449 ---------------------PPKVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 42/272 (15%), Positives = 82/272 (30%), Gaps = 38/272 (13%)

Query: 18  KFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNL 77
           +FF    + YL++ +                    LK+L+   +             S  
Sbjct: 271 QFFWPRPVEYLNIYNL--TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNS 137
             + +  LS +           +  S  +L+                           N 
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ------------------------NV 364

Query: 138 LVKIETEEFPGLPEYQLKALNLRNCSLQALPS---ILLQQLDLRFIDLSHNKLQGIFPSW 194
                 +    L   +L+ L L+   L+       +      L  +D+S N L       
Sbjct: 365 FTDSVFQGCSTLK--RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 195 LLQNNTKLDTLYLLNNSLSGNF--QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLS 252
                  +  L L +N L+G+    LP     +  LD+ +N+    +P ++   L  L  
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLPPK---VKVLDLHNNRIM-SIPKDVTH-LQALQE 477

Query: 253 LNLSENGFEGRIPSSMSEMKRLESLDLSSNNF 284
           LN++ N  +         +  L+ + L  N +
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.1 bits (237), Expect = 3e-22
 Identities = 52/205 (25%), Positives = 77/205 (37%), Gaps = 6/205 (2%)

Query: 224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN 283
              R+ +  N+ S  +P    +    L  L L  N       ++ + +  LE LDLS N 
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 284 FSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDG-LS 340
               +      G   L  L L    LQ  G  +F     L +LYL +N     + D    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHM 399
              +L  L L  N +       F  L  L  L + +N++    P +F +L  L  LY+  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 400 NAFNGSIPGALRRSLSLTVLDLRDN 424
           N  +     AL    +L  L L DN
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.1 bits (224), Expect = 1e-20
 Identities = 49/188 (26%), Positives = 68/188 (36%), Gaps = 9/188 (4%)

Query: 246 ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 305
           I      + L  N       +S    + L  L L SN  +  +     +G   L  L LS
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88

Query: 306 DNHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPP 361
           DN     V    F     L  L+L+      ++  G      +L  L L +N L   +P 
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPD 146

Query: 362 -WFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVL 419
             F +L  L  L +  N++      +F  L SL RL +H N      P A R    L  L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 420 DLRDNEFS 427
            L  N  S
Sbjct: 207 YLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 2e-19
 Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 32/236 (13%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSN- 136
              + + L  N+++    +     ++L  L L  N    +    +    + L+   LS+ 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDN 90

Query: 137 -SLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSW 194
             L  ++   F GL   +L  L+L  C LQ L   L + L  L+++ L  N LQ + P  
Sbjct: 91  AQLRSVDPATFHGLG--RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDD 147

Query: 195 LLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLN 254
             ++   L  L+L  N +S                         +P    + L  L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRIS------------------------SVPERAFRGLHSLDRLL 183

Query: 255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 310
           L +N      P +  ++ RL +L L +NN S  LP + L+   +L +L L+DN   
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 29/135 (21%)

Query: 53  LKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           L  L  L L  N L   L      +L ++  L L  N+++   +     + SL+ L L  
Sbjct: 128 LAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
           N                         +  +    F  L   +L  L L   +L ALP+  
Sbjct: 187 NR------------------------VAHVHPHAFRDLG--RLMTLYLFANNLSALPTEA 220

Query: 172 LQQLD-LRFIDLSHN 185
           L  L  L+++ L+ N
Sbjct: 221 LAPLRALQYLRLNDN 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.0 bits (241), Expect = 7e-22
 Identities = 54/293 (18%), Positives = 94/293 (32%), Gaps = 31/293 (10%)

Query: 125 NHSKLQVFKLSNSLVKIETEEFPGLP--EYQLKALNLRNCSLQALPSILLQQLDLRFIDL 182
           N+  L      N++     + F      E Q      RN ++  L   L+ Q     + L
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF--SELQL 66

Query: 183 SHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGN 242
           +   L  + P  L      +  L +  N+L     LP     L  LD   N+ S  LP  
Sbjct: 67  NRLNLSSL-PDNLPPQ---ITVLEITQNALI---SLPELPASLEYLDACDNRLS-TLPEL 118

Query: 243 MGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL 302
                  L  L++  N     +P   +    LE ++  +N  +  LP        SL  L
Sbjct: 119 PAS----LKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPEL----PTSLEVL 165

Query: 303 SLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG---KIQDGLSKATSLLELDLSNNMLYGQI 359
           S+ +N L    +     +L  L ++ N                 + +      N +   I
Sbjct: 166 SVRNNQLT--FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI-THI 222

Query: 360 PPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR 412
           P    +L     + + +N L   +  S +  + +  Y     +     G    
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.6 bits (240), Expect = 9e-22
 Identities = 71/353 (20%), Positives = 112/353 (31%), Gaps = 53/353 (15%)

Query: 51  CELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
           C +    EL L++ NL   L   L     I VL+++ N L     S+     SLEYL   
Sbjct: 56  CLINQFSELQLNRLNL-SSLPDNL--PPQITVLEITQNALI----SLPELPASLEYLDAC 108

Query: 111 DNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
           DN    L                             P LP   LK L++ N  L  LP +
Sbjct: 109 DNRLSTL-----------------------------PELPA-SLKHLDVDNNQLTMLPEL 138

Query: 171 LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDI 230
                 L +I+  +N+L  + P       T L+ L + NN L+    LP     L  LD+
Sbjct: 139 PAL---LEYINADNNQLTML-PELP----TSLEVLSVRNNQLT---FLPELPESLEALDV 187

Query: 231 SHNKFSC--QLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288
           S N       +P          +     EN     IP ++  +    ++ L  N  S   
Sbjct: 188 STNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SR 245

Query: 289 PRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 348
            R+ LS   +         +        N+ +          F    Q  +S+     E 
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEH 305

Query: 349 DLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNA 401
           +   N           +    +       Q+   +      + LR+    + A
Sbjct: 306 EEHANTFS-AFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAA 357

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 4e-18
 Identities = 56/268 (20%), Positives = 95/268 (35%), Gaps = 35/268 (13%)

Query: 169 SILLQQLDLRFI--DLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLP--SSKHD 224
           SI+L   +   +  +  +N + G +         K +   L   + +    L      + 
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYAD-YFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF 284
              L ++    S  LP N   + P++  L +++N     +P   +    LE LD   N  
Sbjct: 61  FSELQLNRLNLS-SLPDN---LPPQITVLEITQNALI-SLPELPA---SLEYLDACDNRL 112

Query: 285 SGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS-TNLCWLYLNNNHFSGKIQDGLSKAT 343
           S  LP    S    L  L + +N L    + P     L ++  +NN    ++       T
Sbjct: 113 S-TLPELPAS----LKHLDVDNNQLT---MLPELPALLEYINADNN----QLTMLPELPT 160

Query: 344 SLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-FNLSSLRRLYMHMNAF 402
           SL  L + NN L   +P    +L   + LD+S N L  S+P+            +     
Sbjct: 161 SLEVLSVRNNQL-TFLPELPESL---EALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCR 215

Query: 403 N---GSIPGALRRSLSLTVLDLRDNEFS 427
                 IP  +        + L DN  S
Sbjct: 216 ENRITHIPENILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.1 bits (205), Expect = 2e-17
 Identities = 52/287 (18%), Positives = 101/287 (35%), Gaps = 35/287 (12%)

Query: 83  LDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKI 141
            +   N ++G      +     E  +L   N     S       ++    +L+  +L  +
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74

Query: 142 ETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTK 201
                P     Q+  L +   +L +LP +      L ++D   N+L  + P         
Sbjct: 75  PDNLPP-----QITVLEITQNALISLPELPAS---LEYLDACDNRLSTL-PELP----AS 121

Query: 202 LDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFE 261
           L  L + NN L+    LP     L  ++  +N+ +  LP    ++   L  L++  N   
Sbjct: 122 LKHLDVDNNQLT---MLPELPALLEYINADNNQLT-MLP----ELPTSLEVLSVRNNQLT 173

Query: 262 GRIPSSMSEMKRLESLDLSSNNFSG--ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS- 318
             +P        LE+LD+S+N       +P +      +  F    +N +      P + 
Sbjct: 174 -FLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT---HIPENI 226

Query: 319 ---TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPW 362
                 C + L +N  S +I++ LS+ T+  +               
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.4 bits (235), Expect = 3e-21
 Identities = 72/355 (20%), Positives = 131/355 (36%), Gaps = 43/355 (12%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
           TGI +L  L +L  + NN+    +  LS  T++  L   SN+LT      +  +  L YL
Sbjct: 58  TGIEKLTGLTKLICTSNNI---TTLDLSQNTNLTYLACDSNKLT---NLDVTPLTKLTYL 111

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQA 166
           + D N    L     +  +  L     + N+L +I+          QL  L+        
Sbjct: 112 NCDTNKLTKL----DVSQNPLLTYLNCARNTLTEIDVSHNT-----QLTELDCHLNKKIT 162

Query: 167 LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
              +   Q  L  +D S NK+  +     +  N  L+ L    N+++   +L  +++  L
Sbjct: 163 KLDV-TPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNIT---KLDLNQNIQL 214

Query: 227 R-LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS 285
             LD S NK +          L +L   + S N       S++S+   L +L     +  
Sbjct: 215 TFLDCSSNKLTEIDVTP----LTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLL 267

Query: 286 GELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 345
            E+    L+    L +          E+   ++T L  L       +   +  LS+   L
Sbjct: 268 -EID---LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKL 320

Query: 346 LELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMN 400
           + L L+N  L  ++     + + L+ L      +     S   + +L   +    
Sbjct: 321 VYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.5 bits (225), Expect = 7e-20
 Identities = 70/377 (18%), Positives = 135/377 (35%), Gaps = 43/377 (11%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           +L  L  LD   +++       +  LT +  L  +SN +T  L   ++   +L YL+ D 
Sbjct: 40  QLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDS 94

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
           N    L     +   +KL       +  K+   +    P   L  LN    +L  +   +
Sbjct: 95  NKLTNL----DVTPLTKLTYLNCDTN--KLTKLDVSQNP--LLTYLNCARNTLTEID--V 144

Query: 172 LQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR-LDI 230
                L  +D   NK         +   T+L TL    N ++   +L  S++ LL  L+ 
Sbjct: 145 SHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNC 198

Query: 231 SHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290
             N  + +L  N      +L  L+ S N         ++ + +L   D S N  + EL  
Sbjct: 199 DTNNIT-KLDLNQ---NIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD- 249

Query: 291 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350
             +S    L+ L      L  E+   ++T L +          ++   ++  T L  LD 
Sbjct: 250 --VSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDC 304

Query: 351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGAL 410
               +  ++         L +L ++  +L   +  S + + L+ L             ++
Sbjct: 305 QAAGI-TELD--LSQNPKLVYLYLNNTELT-ELDVS-HNTKLKSLSCVNAHIQ-DFS-SV 357

Query: 411 RRSLSLTVLDLRDNEFS 427
            +  +L      + +  
Sbjct: 358 GKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 66/374 (17%), Positives = 123/374 (32%), Gaps = 39/374 (10%)

Query: 54  KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
            N      +   +    +     L  +  LD  ++ +T    + I  +  L  L    NN
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 114 FEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQ 173
              L     L  ++ L      ++  K+   +   L   +L  LN     L  L      
Sbjct: 76  ITTL----DLSQNTNLTYLACDSN--KLTNLDVTPLT--KLTYLNCDTNKLTKLDVSQNP 127

Query: 174 QLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN 233
              L +++ + N L  I     + +NT+L  L    N       +      L  LD S N
Sbjct: 128 L--LTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQ-LTTLDCSFN 180

Query: 234 KFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFL 293
           K + +L  +       L  LN   N    ++   +++  +L  LD SSN  + E+    +
Sbjct: 181 KIT-ELDVSQ---NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID---V 229

Query: 294 SGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN 353
           +    L++   S N L  E+     + L  L+          +  L+  T L+       
Sbjct: 230 TPLTQLTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGC 285

Query: 354 MLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRS 413
               ++     + + L  LD     +   +  S     L  LY++       +   +  +
Sbjct: 286 RKIKELD--VTHNTQLYLLDCQAAGI-TELDLS-QNPKLVYLYLNNTELT-ELD--VSHN 338

Query: 414 LSLTVLDLRDNEFS 427
             L  L   +    
Sbjct: 339 TKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 54/307 (17%), Positives = 104/307 (33%), Gaps = 35/307 (11%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           + +   L  L+ ++N L       +S+ T +  LD   N+    L   +     L  L  
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
             N    L     +  +  L       +   I   +       QL  L+  +  L  +  
Sbjct: 178 SFNKITEL----DVSQNKLLNRLNCDTN--NITKLDLNQNI--QLTFLDCSSNKLTEIDV 229

Query: 170 ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH-DLLRL 228
             L QL   + D S N L  +  S      +KL TL+ +   L    ++  + +  L+  
Sbjct: 230 TPLTQL--TYFDCSVNPLTELDVS----TLSKLTTLHCIQTDLL---EIDLTHNTQLIYF 280

Query: 229 DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288
                +   ++         +L  L+    G        +S+  +L  L L++   + EL
Sbjct: 281 QAEGCR---KIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-EL 333

Query: 289 PRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 348
               +S    L  LS  + H+Q          L   +          ++ L+   + L +
Sbjct: 334 D---VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTN--NSLTI 388

Query: 349 DLSNNML 355
            +S ++L
Sbjct: 389 AVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 59/295 (20%), Positives = 107/295 (36%), Gaps = 31/295 (10%)

Query: 136 NSLVKIETEEFPGL-PEYQLKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPS 193
           N+L   +T+ F    P+    +       +QA  +I  +QL  L  +D  ++ +  +   
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG- 59

Query: 194 WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR-LDISHNKFSCQLPGNMGKILPELLS 252
             ++  T L  L   +N+++    L  S++  L  L    NK +  L       L +L  
Sbjct: 60  --IEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLACDSNKLT-NLDVT---PLTKLTY 110

Query: 253 LNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 312
           LN   N         +S+   L  L+ + N  + E+    +S    L+ L    N    +
Sbjct: 111 LNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITK 163

Query: 313 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFL 372
           +     T L  L  + N  +   +  +S+   L  L+   N +  ++         L FL
Sbjct: 164 LDVTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFL 217

Query: 373 DISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           D S N+L   +  +  L+ L      +N         L     LT L     +  
Sbjct: 218 DCSSNKLT-EIDVT-PLTQLTYFDCSVNPLTELDVSTLS---KLTTLHCIQTDLL 267

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.0 bits (205), Expect = 6e-18
 Identities = 54/288 (18%), Positives = 98/288 (34%), Gaps = 21/288 (7%)

Query: 132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIF 191
               N L   + E + G    +     +   +     + +++ L L+ + +   ++    
Sbjct: 25  SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRI 84

Query: 192 PSWLLQ--NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL------DISHNKFSCQLPGNM 243
               L+    + L  L L N  ++G    P  +     L      ++S       L    
Sbjct: 85  LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 244 GKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELP---RQFLSGCFSLS 300
             + P L  L++++          +     L +LDLS N   GE             +L 
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 301 FLSLSDNHLQ-----GEVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNM 354
            L+L +  ++        +      L  L L++N              + L  L+LS   
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 355 LYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAF 402
           L  Q+P   G  + L  LD+S N+L    PS   L  +  L +  N F
Sbjct: 265 LK-QVPK--GLPAKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 51/275 (18%), Positives = 85/275 (30%), Gaps = 43/275 (15%)

Query: 74  LSNLTHIKVLDLSSNQLTGNLQSVIA---NIKSLEYLSLDDNNFEGLFSFNSLKN-HSKL 129
           +     +K L + + ++   +         I  L+ L+L++    G      L+     L
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 130 QVFKLSNSLVKIETEEFPGLPEY---QLKALNLRNCSLQALPSILLQQL-DLRFIDLSHN 185
            +  L N            L ++    LK L++            ++    L  +DLS N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 186 KLQG---IFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSS----KHDLLRLDISHNKFSCQ 238
              G   +  +        L  L L N  +     + S+    +  L  LD+SHN     
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 239 LPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS 298
                     +L SLNLS  G +                         ++P+   +    
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLK-------------------------QVPKGLPA---K 275

Query: 299 LSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG 333
           LS L LS N L           +  L L  N F  
Sbjct: 276 LSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 39/171 (22%), Positives = 59/171 (34%), Gaps = 13/171 (7%)

Query: 51  CELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA----NIKSLEY 106
                L  L +++ +        +     +  LDLS N   G    + A       +L+ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 107 LSLDDNNFEGLFS--FNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCS 163
           L+L +   E              +LQ   LS NSL           P  QL +LNL    
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS-QLNSLNLSFTG 264

Query: 164 LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG 214
           L+ +P  L  +  L  +DLS+N+L        L     +  L L  N    
Sbjct: 265 LKQVPKGLPAK--LSVLDLSYNRLDRNPSPDELPQ---VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 21/210 (10%)

Query: 237 CQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLS-- 294
            +L G    +   L  ++   +  +    + + +   L+ L + +      +    L   
Sbjct: 36  VELYGGGRSLEYLLKRVDTEADLGQ---FTDIIKSLSLKRLTVRAARIPSRILFGALRVL 92

Query: 295 GCFSLSFLSLSDNHLQGEVVFP----NSTNLCWLYLNNNHFSGKIQD----GLSKATSLL 346
           G   L  L+L +  + G    P       +L  L L N  ++ +              L 
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 347 ELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS-----FNLSSLRRLYMHMNA 401
            L ++                 L  LD+S+N   G              +L+ L +    
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 402 FN---GSIPGALRRSLSLTVLDLRDNEFSG 428
                G         + L  LDL  N    
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRD 242

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.8 bits (209), Expect = 8e-18
 Identities = 58/362 (16%), Positives = 114/362 (31%), Gaps = 69/362 (19%)

Query: 56  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 115
           + E       +   + P           +L    +T         + S++ +  ++++ +
Sbjct: 1   MGETITVSTPI-KQIFP-DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK 56

Query: 116 GLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL 175
            +     L N                            +  L L    L  +   L    
Sbjct: 57  SVQGIQYLPN----------------------------VTKLFLNGNKLTDI-KPLTNLK 87

Query: 176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKF 235
           +L ++ L  NK++ +     L++  KL +L L +N +S               DI+    
Sbjct: 88  NLGWLFLDENKIKDLSS---LKDLKKLKSLSLEHNGIS---------------DINGLVH 129

Query: 236 SCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSG 295
                      LP+L SL L  N       + +S + +L++L L  N  S       L+G
Sbjct: 130 -----------LPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDI---VPLAG 173

Query: 296 CFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 355
              L  L LS NH+          NL  L L +     K  +  S       +  ++  L
Sbjct: 174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 356 YGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLS 415
               P    +    +  ++  +    +   SF       +      F+G +   L+   +
Sbjct: 234 V--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

Query: 416 LT 417
           ++
Sbjct: 292 VS 293

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.8 bits (209), Expect = 8e-18
 Identities = 49/264 (18%), Positives = 100/264 (37%), Gaps = 23/264 (8%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
                    ++ +L K ++    +   + L  I  +  +++ +  ++Q  I  + ++  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 70

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQA 166
            L+ N    +    +LKN   L    L  N +  + +     L   +LK+L+L +  +  
Sbjct: 71  FLNGNKLTDIKPLTNLKN---LGWLFLDENKIKDLSS--LKDLK--KLKSLSLEHNGISD 123

Query: 167 LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
           +   L+    L  + L +NK+  I     L   TKLDTL L +N +S +    +    L 
Sbjct: 124 ING-LVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQ 178

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG 286
            L +S N  S  L    G  L  L  L L       +  +  S +    ++  +  +   
Sbjct: 179 NLYLSKNHIS-DLRALAG--LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV- 234

Query: 287 ELPRQFLSGCFSLSFLSLSDNHLQ 310
               + +S        ++  +  +
Sbjct: 235 --TPEIISDDGDYEKPNVKWHLPE 256

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 51/233 (21%), Positives = 83/233 (35%), Gaps = 29/233 (12%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFS--FNSLKNHSKLQVFKLS 135
              K LDLS N L         +   L+ L L     + +    + SL + S L +    
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT--G 85

Query: 136 NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSW 194
           N +  +    F GL    L+ L     +L +L +  +  L  L+ ++++HN +Q      
Sbjct: 86  NPIQSLALGAFSGLS--SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 195 LLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLN 254
              N T L+ L L +N +                 I            + ++    LSL+
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ---------------SIYCTDLR-----VLHQMPLLNLSLD 183

Query: 255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 307
           LS N     I     +  RL+ L L +N     +P        SL  + L  N
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 51/210 (24%), Positives = 72/210 (34%), Gaps = 13/210 (6%)

Query: 224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM-SEMKRLESLDLSSN 282
               LD+S N     L        PEL  L+LS    +  I       +  L +L L+ N
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL- 339
                L     SG  SL  L   + +L         +   L  L + +N           
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 340 SKATSLLELDLSNNMLYGQIPPW-FGNLSGLQF----LDISENQLCGSVPSSFNLSSLRR 394
           S  T+L  LDLS+N +   I       L  +      LD+S N +    P +F    L+ 
Sbjct: 146 SNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204

Query: 395 LYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
           L +  N       G   R  SL  + L  N
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 14/189 (7%)

Query: 246 ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 305
           +     +L+LS N        S      L+ LDLS       +          LS L L+
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 306 DNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNML-YGQIPP 361
            N +Q      F   ++L  L     + +  +++       +L EL++++N++   ++P 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 362 WFGNLSGLQFLDISENQLCGSVPS-SF-NLSSLR----RLYMHMNAFNGSIPGALRRSLS 415
           +F NL+ L+ LD+S N++  S+       L  +      L + +N  N  I     + + 
Sbjct: 144 YFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 416 LTVLDLRDN 424
           L  L L  N
Sbjct: 202 LKELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 27/200 (13%)

Query: 53  LKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
              L  LDLS+  +   +      +L+H+  L L+ N +        + + SL+ L   +
Sbjct: 51  FPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 112 NNFEGL--FSFNSLKNHSKLQVFKLS-NSLVKIETEE-FPGLPEYQLKALNLRNCSLQAL 167
            N   L  F    LK    L+   ++ N +   +  E F  L    L+ L+L +  +Q++
Sbjct: 110 TNLASLENFPIGHLKT---LKELNVAHNLIQSFKLPEYFSNLT--NLEHLDLSSNKIQSI 164

Query: 168 PS------ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQ 217
                     +  L+L  +DLS N +  I P        +L  L L  N L     G F 
Sbjct: 165 YCTDLRVLHQMPLLNLS-LDLSLNPMNFIQPG--AFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 218 LPSSKHDLLRLDISHNKFSC 237
             +S   L ++ +  N + C
Sbjct: 222 RLTS---LQKIWLHTNPWDC 238

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 52/215 (24%), Positives = 79/215 (36%), Gaps = 22/215 (10%)

Query: 176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNF-QLPSSKHDLLRLDI 230
             + +DLS N L+ +  S+   +  +L  L L    +     G +  L      L  L +
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH----LSTLIL 83

Query: 231 SHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM-SEMKRLESLDLSSNNF-SGEL 288
           + N     L       L  L  L   E      + +     +K L+ L+++ N   S +L
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 289 PRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCW----LYLNNNHFSGKIQDGLSKA 342
           P  F S   +L  L LS N +Q            +      L L+ N  +  IQ G  K 
Sbjct: 142 PEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 343 TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISEN 377
             L EL L  N L       F  L+ LQ + +  N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 18/154 (11%)

Query: 40  VPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQS--V 97
           + L  F       L +L +L   + NL    +  + +L  +K L+++ N +  + +    
Sbjct: 91  LALGAFSG-----LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEY 144

Query: 98  IANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-----NSLVKIETEEFPGLPEY 152
            +N+ +LE+L L  N  + +     L+   ++ +  LS     N +  I+   F  +   
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--- 200

Query: 153 QLKALNLRNCSLQALPSILLQQLD-LRFIDLSHN 185
           +LK L L    L+++P  +  +L  L+ I L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 49/209 (23%), Positives = 67/209 (32%), Gaps = 15/209 (7%)

Query: 197 QNNTKLDTLYLLNNSLSGNFQLPSS-KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNL 255
                   +     +L+    LP     D   L +S N                L  LNL
Sbjct: 7   SKVASHLEVNCDKRNLT---ALPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNL 62

Query: 256 SENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EV 313
                E         +  L +LDLS N     LP        +L+ L +S N L      
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLG 118

Query: 314 VFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPP-WFGNLSGLQF 371
                  L  LYL  N     +  GL +    L +L L+NN L  ++P      L  L  
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDT 176

Query: 372 LDISENQLCGSVPSSFNLSSLRRLYMHMN 400
           L + EN L       F    L   ++H N
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 44/184 (23%), Positives = 68/184 (36%), Gaps = 12/184 (6%)

Query: 246 ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 305
           +  +   L+LSEN       +++    RL  L+L     +       L     L  L LS
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP---VLGTLDLS 85

Query: 306 DNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPPW- 362
            N LQ   ++      L  L ++ N  +  +  G       L EL L  N L   +PP  
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPGL 143

Query: 363 FGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLD 420
                 L+ L ++ N L   +P+     L +L  L +  N+   +IP     S  L    
Sbjct: 144 LTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 421 LRDN 424
           L  N
Sbjct: 202 LHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.1 bits (177), Expect = 3e-14
 Identities = 47/190 (24%), Positives = 68/190 (35%), Gaps = 39/190 (20%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
              L +L+L +  L          L  +  LDLS NQL  +L  +   + +L  L +  N
Sbjct: 54  YTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110

Query: 113 NFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILL 172
                                    L  +      GL   +L+ L L+   L+ LP  LL
Sbjct: 111 R------------------------LTSLPLGALRGLG--ELQELYLKGNELKTLPPGLL 144

Query: 173 QQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQLPSSKHDLLR 227
                L  + L++N L  + P+ LL     LDTL L  NSL     G F        L  
Sbjct: 145 TPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL----LPF 199

Query: 228 LDISHNKFSC 237
             +  N + C
Sbjct: 200 AFLHGNPWLC 209

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 50/206 (24%), Positives = 73/206 (35%), Gaps = 32/206 (15%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNS 137
               +L LS N L     + +     L  L+LD      L    +L     L +    N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS--HNQ 88

Query: 138 LVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLL 196
           L  +       LP   L  L++    L +LP   L+ L +L+ + L  N+L+ + P  LL
Sbjct: 89  LQSLPL-LGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLL 144

Query: 197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLS 256
               KL+ L L NN+L+                        +LP  +   L  L +L L 
Sbjct: 145 TPTPKLEKLSLANNNLT------------------------ELPAGLLNGLENLDTLLLQ 180

Query: 257 ENGFEGRIPSSMSEMKRLESLDLSSN 282
           EN     IP        L    L  N
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 63/344 (18%), Positives = 116/344 (33%), Gaps = 67/344 (19%)

Query: 74  LSNLTHIKVLDLSSNQLTG----NLQSVIANIKSLEYLSLDDNNF--EGLFSF-NSLKNH 126
           ++  + I+   L  + +T     ++ +V+    S++ + L  N    E       ++ + 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 127 SKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHN 185
             L++ + S     +++ E    L               + L   LL+   L  + LS N
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEAL---------------RLLLQALLKCPKLHTVRLSDN 104

Query: 186 KL-----QGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLP 240
                  + +     L  +T L+ LYL NN L      P +   + R  +     + +  
Sbjct: 105 AFGPTAQEPLID--FLSKHTPLEHLYLHNNGLG-----PQAGAKIARA-LQELAVNKKAK 156

Query: 241 GNMGKILPELLSLNLSENGFEGR----IPSSMSEMKRLESLDLSSNNFSGE----LPRQF 292
                  P L S+    N  E         +    + L ++ +  N    E    L  + 
Sbjct: 157 NA-----PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 293 LSGCFSLSFLSLSDNHLQGE------VVFPNSTNLCWLYLNNNHFSGK----IQDGLSKA 342
           L+ C  L  L L DN           +   +  NL  L LN+   S +    + D  SK 
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271

Query: 343 --TSLLELDLSNNMLYGQIPPWFG-----NLSGLQFLDISENQL 379
               L  L L  N +               +  L FL+++ N+ 
Sbjct: 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 47/328 (14%), Positives = 103/328 (31%), Gaps = 71/328 (21%)

Query: 154 LKALNLRNCSL-----QALPSILLQQLDLRFIDLSHNKL-----QGIFPSWLLQNNTKLD 203
           ++  +L+  ++     +++ ++LL+   ++ I LS N +     + +     + +   L+
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE--NIASKKDLE 63

Query: 204 TLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGR 263
                +                          + +L        P+L ++ LS+N F   
Sbjct: 64  IAEFSDIFTGRVKDEIPE--------------ALRLLLQALLKCPKLHTVRLSDNAFGPT 109

Query: 264 ----IPSSMSEMKRLESLDLSSNNFSGE------------LPRQFLSGCFSLSFLSLSDN 307
               +   +S+   LE L L +N    +               +       L  +    N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 308 HLQGE------VVFPNSTNLCWLYLNNNHFSGK-----IQDGLSKATSLLELDLSNNMLY 356
            L+          F +   L  + +  N    +     + +GL+    L  LDL +N   
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 357 GQ----IPPWFGNLSGLQFLDISENQ--------LCGSVPSSFNLSSLRRLYMHMNAFNG 404
                 +     +   L+ L +++          +  +     N   L+ L +  N    
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIEL 288

Query: 405 SIPGALRRSL-----SLTVLDLRDNEFS 427
                L+  +      L  L+L  N FS
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 57/346 (16%), Positives = 99/346 (28%), Gaps = 82/346 (23%)

Query: 56  LVELDLSKNNLYG----HLSPCLSNLTHIKVLDLSSNQLTGN----LQSVIANIKSLEYL 107
           +    L  + +       +   L     +K + LS N +       L   IA+ K LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL--- 164
              D           +K+     +  L  +L+K             L  + L + +    
Sbjct: 66  EFSDI------FTGRVKDEIPEALRLLLQALLKCPK----------LHTVRLSDNAFGPT 109

Query: 165 --QALPSILLQQLDLRFIDLSHNK------------LQGIFPSWLLQNNTKLDTLYLLNN 210
             + L   L +   L  + L +N             LQ +  +   +N   L ++    N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSEN-----GFEGRIP 265
            L                       S +      +    L ++ + +N     G E  + 
Sbjct: 170 RLENG--------------------SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 266 SSMSEMKRLESLDLSSNNFSGELPRQF---LSGCFSLSFLSLSDNHLQGE--------VV 314
             ++  + L+ LDL  N F+          L    +L  L L+D  L             
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 315 FPNSTNLCWLYLNNNHFSGKIQDGLSKA-----TSLLELDLSNNML 355
              +  L  L L  N         L          LL L+L+ N  
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 56/352 (15%), Positives = 112/352 (31%), Gaps = 76/352 (21%)

Query: 49  GICELKNLVELDLSKNNLYG-----HLSPCLSNLTHIKVLDLSSNQL----------TGN 93
            + E  ++ E+ LS N + G      LS  +++   +++ + S                 
Sbjct: 27  VLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85

Query: 94  LQSVIANIKSLEYLSLDDNNF--EGLFSF-NSLKNHSKLQVFKLSNSLVKIETEEF--PG 148
           L   +     L  + L DN F         + L  H+ L+   L N+ +  +        
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 149 LPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQ---GIFPSWLLQNNTKLDTL 205
           L E  +         L+++                 N+L+       +   Q++  L T+
Sbjct: 146 LQELAVNKKAKNAPPLRSI-------------ICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 206 YLLNNSLSGN------FQLPSSKHDLLRLDISHNKFS---CQLPGNMGKILPELLSLNLS 256
            ++ N +          +  +   +L  LD+  N F+           K  P L  L L+
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252

Query: 257 ENGFEGRIPSSMSEM------KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 310
           +     R  +++ +         L++L L  N    +          +L           
Sbjct: 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD-------AVRTLK---------- 295

Query: 311 GEVVFPNSTNLCWLYLNNNHFS------GKIQDGLSKATSLLELDLSNNMLY 356
             V+     +L +L LN N FS       +I++  S        +L +    
Sbjct: 296 -TVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 48/282 (17%), Positives = 85/282 (30%), Gaps = 65/282 (23%)

Query: 49  GICELKNLVELDLSKNNLYG----HLSPCLSNLTHIKVLDLSSNQLT------------- 91
            + +   L  + LS N         L   LS  T ++ L L +N L              
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 92  GNLQSVIANIKSLEYLSLDDNNF--EGLFSF-NSLKNHSKLQVFKLSNSLVKIETEEFPG 148
             +     N   L  +    N      +  +  + ++H  L   K+  +   I  E    
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN--GIRPEGIEH 206

Query: 149 LPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKL-----QGIFPSWLLQNNTKLD 203
           L    L         L+ L             DL  N         +  +  L++   L 
Sbjct: 207 LLLEGLAY----CQELKVL-------------DLQDNTFTHLGSSAL--AIALKSWPNLR 247

Query: 204 TLYLLNN--------SLSGNFQLPSSKHDLLRLDISHNKFS----CQLPGNMGKILPELL 251
            L L +         ++   F    +   L  L + +N+        L   + + +P+LL
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306

Query: 252 SLNLSENGF--EGRIPSSMSEM----KRLESLDLSSNNFSGE 287
            L L+ N F  E  +   + E+     R E  +L       +
Sbjct: 307 FLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 4e-15
 Identities = 43/238 (18%), Positives = 75/238 (31%), Gaps = 21/238 (8%)

Query: 154 LKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN-NS 211
              L      L+ +         DL  I++S N +  +  + +  N  KL  + +   N+
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 212 LS----GNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPS 266
           L       FQ LP+    L  L IS+      LP        + + L++ +N     I  
Sbjct: 92  LLYINPEAFQNLPN----LQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 267 SMSE--MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLC 322
           +           L L+ N    E+     +G          +N+L+     VF  ++   
Sbjct: 147 NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 323 WLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC 380
            L ++          GL     L      N     +  P    L  L    ++    C
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALMEASLTYPSHC 259

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 7e-13
 Identities = 45/239 (18%), Positives = 92/239 (38%), Gaps = 22/239 (9%)

Query: 54  KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQS-VIANIKSLEYLSLDDN 112
           +N +EL      L        S    ++ +++S N +   +++ V +N+  L  + ++  
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNL-RNCSLQALPSI 170
           N     +  + +N   LQ   +S   +  +           Q   L++  N ++  +   
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--QKVLLDIQDNINIHTIERN 147

Query: 171 LLQQL--DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLL-NNSLSGNFQLPSSK----H 223
               L  +   + L+ N +Q I  S    N T+LD L L  NN+L    +LP+       
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNS--AFNGTQLDELNLSDNNNLE---ELPNDVFHGAS 202

Query: 224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282
             + LDIS  +    LP    + L +L + +        +   ++ ++  L    L+  
Sbjct: 203 GPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 8/189 (4%)

Query: 246 ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 305
           +    + L             + S    LE +++S N+    +     S    L  + + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 306 D-NHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPP 361
             N+L       F N  NL +L ++N      + D     +   + LD+ +N+    I  
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 362 -WFGNLSG-LQFLDISENQLCGSVPSSFNLSSLRRLY-MHMNAFNGSIPGALRRSLSLTV 418
             F  LS     L +++N +     S+FN + L  L     N            +    +
Sbjct: 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 419 LDLRDNEFS 427
           LD+      
Sbjct: 207 LDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 42/262 (16%), Positives = 91/262 (34%), Gaps = 39/262 (14%)

Query: 53  LKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLS-SNQLTGNLQSVIANIKSLEYLSLD 110
             +L ++++S+N++   +     SNL  +  + +  +N L         N+ +L+YL + 
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 111 DNNFEGLFSFNSLKNHSKLQVFKLSN-SLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
           +   + L   + + +  K+ +    N ++  IE   F GL   +   L L    +Q + +
Sbjct: 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF-ESVILWLNKNGIQEIHN 171

Query: 170 ILLQQL-------------------------DLRFIDLSHNKLQGIFPSWLLQNNTKLDT 204
                                              +D+S  ++  + PS+ L+N  KL  
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-PSYGLENLKKLRA 230

Query: 205 LYLLNNSLSGNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGR 263
               N       + L +    L+   +++    C           ++  L+   N    R
Sbjct: 231 RSTYNLKKLPTLEKLVA----LMEASLTYPSHCC----AFANWRRQISELHPICNKSILR 282

Query: 264 IPSSMSEMKRLESLDLSSNNFS 285
                    R +   L+ +N S
Sbjct: 283 QEVDYMTQARGQRSSLAEDNES 304

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 46  VNTGICELKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSL 104
           ++        L EL+LS NN    L        +   +LD+S  ++       + N+K L
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228

Query: 105 EYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSN 136
              S    N + L +   L     L    L+ 
Sbjct: 229 RARST--YNLKKLPTLEKLVA---LMEASLTY 255

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 8/182 (4%)

Query: 247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 306
               L+  L ++        + ++M  L  + L++ N +       +    ++  L++++
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINN 75

Query: 307 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNL 366
            H          +NL  L +     +      LS  TSL  LD+S++     I      L
Sbjct: 76  IHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 367 SGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
             +  +D+S N     +     L  L+ L +  +  +      +     L  L       
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

Query: 427 SG 428
            G
Sbjct: 194 GG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 6e-13
 Identities = 25/164 (15%), Positives = 69/164 (42%), Gaps = 11/164 (6%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           ++ +L  + L+  N+   L+  +    +IK L +++   T    + I+ + +LE L +  
Sbjct: 42  QMNSLTYITLANINV-TDLTG-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMG 97

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
            +        +L   + L +  +S ++       +   LP  ++ +++L           
Sbjct: 98  KDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKINTLP--KVNSIDLSYNGAITDIMP 154

Query: 171 LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG 214
           L    +L+ +++  + +        +++  KL+ LY  + ++ G
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
             I  L NL  L +   ++     P LS LT + +LD+S +    ++ + I  +  +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSN 136
            L  N    +     LK   +L+   +  
Sbjct: 142 DLSYNG--AITDIMPLKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 27/187 (14%), Positives = 74/187 (39%), Gaps = 15/187 (8%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
             K  +   L +++   +++   + +  +  + L++  +T +L   I    +++ L++++
Sbjct: 21  TFKAYLNGLLGQSST-ANITE--AQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINN 75

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
            +       + L N  +L++      +   +     GL    L  L++ + +        
Sbjct: 76  IHATNYNPISGLSNLERLRIM--GKDVTSDKIPNLSGLT--SLTLLDISHSAHDDSILTK 131

Query: 172 LQQL-DLRFIDLSHN-KLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLD 229
           +  L  +  IDLS+N  +  I P   L+   +L +L +  + +  +++       L +L 
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLY 187

Query: 230 ISHNKFS 236
                  
Sbjct: 188 AFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
               + T I  L  +  +DLS N     + P L  L  +K L++  + +       I + 
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDF 180

Query: 102 KSLEYLSLDDNN 113
             L  L      
Sbjct: 181 PKLNQLYAFSQT 192

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.2 bits (177), Expect = 4e-14
 Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 13/175 (7%)

Query: 93  NLQSVIANI-KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLP 150
            L +V  ++      L L  NN   L +  +    + L    LS N L  I +E F  +P
Sbjct: 29  QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 151 EYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN 209
              L+ L+L +  L  L   L   L  L  + L +N +  +      ++  +L  LYL  
Sbjct: 89  --NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQ 145

Query: 210 NSLS----GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPEL--LSLNLSEN 258
           N +S       +  +    L+ LD+S NK   +LP    + LP      L L  N
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 5e-13
 Identities = 45/156 (28%), Positives = 58/156 (37%), Gaps = 10/156 (6%)

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM-SEMKRLESLDLSSNNFS 285
            LD+SHN  S          L  L SL LS N     I S     +  L  LDLSSN+  
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 286 GELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDG----L 339
             L     S   +L  L L +NH+       F +   L  LYL+ N  S +         
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDG 159

Query: 340 SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDIS 375
           +K   L+ LDLS+N L          L       + 
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 55  NLVELDLSKNNLYGHLSP--CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
               LDLS NNL   L      + LT++  L LS N L          + +L YL L  N
Sbjct: 40  YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 113 NFEGL--FSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
           +   L  F F+ L     L+V  L  N +V ++   F  +   QL+ L L    +   P 
Sbjct: 99  HLHTLDEFLFSDL---QALEVLLLYNNHIVVVDRNAFEDMA--QLQKLYLSQNQISRFPV 153

Query: 170 ILLQQLD----LRFIDLSHNKLQGIFPSWLLQ-NNTKLDTLYLLNNSL 212
            L++  +    L  +DLS NKL+ +  + L +      + LYL NN L
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 302 LSLSDNH---LQGEVVFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYG 357
           L LS N+   L+ E      TNL  L L++NH +  I         +L  LDLS+N L  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL-H 101

Query: 358 QIPPW-FGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLS 415
            +  + F +L  L+ L +  N +     ++F +++ L++LY+  N  +      ++    
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161

Query: 416 LT---VLDLRDNEFS 427
           L    +LDL  N+  
Sbjct: 162 LPKLMLLDLSSNKLK 176

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 50/330 (15%), Positives = 96/330 (29%), Gaps = 68/330 (20%)

Query: 61  LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSF 120
           +++      + P    L +   +    + +T       A++  +  LS        +   
Sbjct: 3   ITQPTAINVIFP-DPALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEGV 59

Query: 121 NSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFI 180
             L N                            L  L L++  +  L   L     +  +
Sbjct: 60  QYLNN----------------------------LIGLELKDNQITDLAP-LKNLTKITEL 90

Query: 181 DLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLP 240
           +LS N L+ +     +     + TL L +  ++    L                      
Sbjct: 91  ELSGNPLKNVSA---IAGLQSIKTLDLTSTQITDVTPLAG-------------------- 127

Query: 241 GNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS 300
                 L  L  L L  N       S ++ +  L+ L + +   S       L+    L+
Sbjct: 128 ------LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLT 176

Query: 301 FLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP 360
            L   DN +       +  NL  ++L NN  S      L+  ++L  + L+N  +  Q  
Sbjct: 177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPV 234

Query: 361 PWFGNLSGLQFLDISENQLCGSVPSSFNLS 390
            +  NL     +             S N +
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 37/211 (17%), Positives = 87/211 (41%), Gaps = 20/211 (9%)

Query: 49  GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
              +L  +  L      +   +   +  L ++  L+L  NQ+T    + + N+  +  L 
Sbjct: 36  TQADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKDNQITD--LAPLKNLTKITELE 91

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP 168
           L  N  + + +   L++   ++   L+++ +  +     GL    L+ L L    +  + 
Sbjct: 92  LSGNPLKNVSAIAGLQS---IKTLDLTSTQIT-DVTPLAGLS--NLQVLYLDLNQITNIS 145

Query: 169 SILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 227
              L  L  L+++ + + ++  + P   L N +KL TL   +N +S +    +S  +L+ 
Sbjct: 146 P--LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKIS-DISPLASLPNLIE 199

Query: 228 LDISHNKFSCQLPGNMGKILPELLSLNLSEN 258
           + + +N+ S  +          L  + L+  
Sbjct: 200 VHLKNNQIS-DVSPLAN--TSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 9e-14
 Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 20/237 (8%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
            G+  L NL+ L+L  N +   L+P L NLT I  L+LS N L  N+ + IA ++S++ L
Sbjct: 57  EGVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTL 112

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
            L       +     L N   LQV  L  + +        GL    L+ L++ N  +  L
Sbjct: 113 DLTSTQITDVTPLAGLSN---LQVLYLDLNQIT-NISPLAGLT--NLQYLSIGNAQVSDL 166

Query: 168 PSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
               L  L  L  +    NK+  I P   L +   L  ++L NN +S +    ++  +L 
Sbjct: 167 TP--LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQIS-DVSPLANTSNLF 220

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN 283
            + +++   + Q       ++   +    S        P+++S+     S +L+ N 
Sbjct: 221 IVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA---PATISDNGTYASPNLTWNL 274

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 23/238 (9%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
                L N V+ +L K ++   L      L+ ++  +  ++ +  +L   +    +L+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSV-TDLVS-QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
            L  N    +   + LK+ +KL+   ++ + +K       G+P   L  L L N  L+  
Sbjct: 69  HLSHNQ---ISDLSPLKDLTKLEELSVNRNRLK----NLNGIPSACLSRLFLDNNELRDT 121

Query: 168 PSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
            S  L  L +L  + + +NKL+ I     L   +KL+ L L  N ++    L   K  + 
Sbjct: 122 DS--LIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEITNTGGLTRLKK-VN 175

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRI-PSSMSEMKRLESLDLSSNN 283
            +D++  K   +      K  PEL   N  ++     I P  +S         +    
Sbjct: 176 WIDLTGQKCVNEPV----KYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 19/194 (9%)

Query: 209 NNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM 268
              ++  F  P   +  ++ ++     +  L     K L  + + N   +    +  + M
Sbjct: 6   PTPINQVFPDPGLAN-AVKQNLGKQSVT-DLVSQ--KELSGVQNFNGDNSNI--QSLAGM 59

Query: 269 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNN 328
                L+ L LS N  S +L    L     L  LS++ N L+  +    S  L  L+L+N
Sbjct: 60  QFFTNLKELHLSHNQIS-DLS--PLKDLTKLEELSVNRNRLK-NLNGIPSACLSRLFLDN 115

Query: 329 NHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSS 386
           N    +++D   L    +L  L + NN L   I    G LS L+ LD+  N++  +    
Sbjct: 116 N----ELRDTDSLIHLKNLEILSIRNNKL-KSIVM-LGFLSKLEVLDLHGNEIT-NTGGL 168

Query: 387 FNLSSLRRLYMHMN 400
             L  +  + +   
Sbjct: 169 TRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 21/206 (10%)

Query: 177 LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFS 236
               +L    +  +      +  + +      N+++  +        +L  L +SHN+ S
Sbjct: 21  AVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQIS 76

Query: 237 CQLPGNMGKI--LPELLSLNLSENGFEGRIPS-SMSEMKRLESLDLSSNNFSGELPRQFL 293
                ++  +  L +L  L+++ N    R+ + +      L  L L +N          L
Sbjct: 77  -----DLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTDS---L 124

Query: 294 SGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN 353
               +L  LS+ +N L+  V+    + L  L L+ N  +     GL++   +  +DL+  
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182

Query: 354 MLYGQIPPWFGNLSGLQFLDISENQL 379
               +   +   L     +   + + 
Sbjct: 183 KCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 36/201 (17%), Positives = 67/201 (33%), Gaps = 21/201 (10%)

Query: 182 LSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPG 241
                +  +FP              L   S++           +   +  ++     L G
Sbjct: 4   QRPTPINQVFP---DPGLANAVKQNLGKQSVTDLVSQ-KELSGVQNFNGDNSNIQ-SLAG 58

Query: 242 NMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF 301
              +    L  L+LS N     + S + ++ +LE L ++ N                LS 
Sbjct: 59  --MQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKNLNGIPSAC----LSR 110

Query: 302 LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQI 359
           L L +N L+      +  NL  L + NN    K++    L   + L  LDL  N +    
Sbjct: 111 LFLDNNELRDTDSLIHLKNLEILSIRNN----KLKSIVMLGFLSKLEVLDLHGNEIT-NT 165

Query: 360 PPWFGNLSGLQFLDISENQLC 380
                 L  + ++D++  +  
Sbjct: 166 GG-LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 39/259 (15%), Positives = 76/259 (29%), Gaps = 66/259 (25%)

Query: 98  IANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKA 156
              + +    +L   +   L S   L     +Q F    +++  +               
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSG---VQNFNGDNSNIQSLA-------------- 57

Query: 157 LNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF 216
                  +Q   +       L+ + LSHN++  + P   L++ TKL+ L +  N L    
Sbjct: 58  ------GMQFFTN-------LKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLN 101

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276
            +PS+   L RL + +N+                                S+  +K LE 
Sbjct: 102 GIPSAC--LSRLFLDNNELRD---------------------------TDSLIHLKNLEI 132

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ 336
           L + +N     +    L     L  L L  N +           + W+ L       +  
Sbjct: 133 LSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPV 189

Query: 337 DGLSKATSLLELDLSNNML 355
               +      +   +   
Sbjct: 190 KYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 293 LSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN 352
             G  +    +L    +   V     + +     +N++    +  G+   T+L EL LS+
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSH 72

Query: 353 NMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR 412
           N +   + P   +L+ L+ L ++ N+L     +    + L RL++  N        +L  
Sbjct: 73  NQI-SDLSP-LKDLTKLEELSVNRNRL--KNLNGIPSACLSRLFLDNN--ELRDTDSLIH 126

Query: 413 SLSLTVLDLRDN 424
             +L +L +R+N
Sbjct: 127 LKNLEILSIRNN 138

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 275 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFS 332
             + L  N     +P    S    L  + LS+N +       F    +L  L L  N  +
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 333 GKIQDGL-SKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCGSVPSSF-NL 389
            ++   L     SL  L L+ N +   +    F +L  L  L + +N+L      +F  L
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 390 SSLRRLYMHMNAFN 403
            +++ +++  N F 
Sbjct: 152 RAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 302 LSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQ 358
           + L  N ++      F     L  + L+NN  S ++         SL  L L  N +  +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI-TE 94

Query: 359 IPP-WFGNLSGLQFLDISENQLCGSVPS-SF-NLSSLRRLYMHMNAFNGSIPGALRRSLS 415
           +P   F  L  LQ L ++ N++   +   +F +L +L  L ++ N       G      +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 416 LTVLDLRDN 424
           +  + L  N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFS--FNSLKNHSKLQVFKLS 135
             I  + L  N +        +  K L  + L +N    L    F  L++   L    L 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS---LNSLVLY 88

Query: 136 -NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPS 193
            N + ++    F GL    L+ L L    +  L     Q L +L  + L  NKLQ I   
Sbjct: 89  GNKITELPKSLFEGLF--SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-AK 145

Query: 194 WLLQNNTKLDTLYLLNN 210
                   + T++L  N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 324 LYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCG 381
           + L  N     I  G  S    L  +DLSNN +  ++ P  F  L  L  L +  N++  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKI-T 93

Query: 382 SVPSS-F-NLSSLRRLYMHMNAFNGSIP-GALRRSLSLTVLDLRDNEFS 427
            +P S F  L SL+ L ++ N  N  +   A +   +L +L L DN+  
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 17/155 (10%)

Query: 161 NCS---LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS---- 213
           +C    L  +P+ L +   +  I L  N ++ I P        KL  + L NN +S    
Sbjct: 17  DCRGKGLTEIPTNLPE--TITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAP 73

Query: 214 GNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK 272
             F  L S    L  L +  NK + +LP ++ + L  L  L L+ N        +  ++ 
Sbjct: 74  DAFQGLRS----LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH 128

Query: 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 307
            L  L L  N     + +   S   ++  + L+ N
Sbjct: 129 NLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 53  LKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           L++L  L L  N +   L       L  +++L L++N++         ++ +L  LSL D
Sbjct: 79  LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 112 NNFEGL--FSFNSLKNHSKLQVF 132
           N  + +   +F+ L+    + + 
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLA 160

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 48/238 (20%), Positives = 94/238 (39%), Gaps = 20/238 (8%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
                    ++ +L K ++    +   + L  I  +  +++ +  ++Q  I  + ++  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 73

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
            L+ N    +    +LKN   L + +  N +  + +     L   +LK+L+L +  +  +
Sbjct: 74  FLNGNKLTDIKPLANLKNLGWLFLDE--NKVKDLSS--LKDLK--KLKSLSLEHNGISDI 127

Query: 168 PSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
               L  L  L  + L +NK+  I     L   TKLDTL L +N +S +    +    L 
Sbjct: 128 NG--LVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQ 181

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF 284
            L +S N  S  L    G  L  L  L L       +  +  S +    ++  +  + 
Sbjct: 182 NLYLSKNHIS-DLRALAG--LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 54/237 (22%), Positives = 107/237 (45%), Gaps = 20/237 (8%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
               EL ++ ++  + +++   +   +  L ++  L L+ N+LT ++   +AN+K+L +L
Sbjct: 40  VTQNELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWL 95

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQA 166
            LD+N    +   +SLK+  KL+   L  N +  I       LP  QL++L L N  +  
Sbjct: 96  FLDENK---VKDLSSLKDLKKLKSLSLEHNGISDING--LVHLP--QLESLYLGNNKITD 148

Query: 167 LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
           + ++L +   L  + L  N++  I P   L   TKL  LYL  N +S + +  +   +L 
Sbjct: 149 I-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS-DLRALAGLKNLD 203

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN 283
            L++   +     P N    L    ++  ++       P  +S+    E  ++  + 
Sbjct: 204 VLELFSQEC-LNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 51/247 (20%), Positives = 85/247 (34%), Gaps = 21/247 (8%)

Query: 182 LSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPG 241
                ++ IF         +     L   S++           + ++  +++     + G
Sbjct: 9   TVPTPIKQIFS---DDAFAETIKDNLKKKSVTDAVTQNELNS-IDQIIANNSDIK-SVQG 63

Query: 242 NMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF 301
              + LP +  L L+ N     I   ++ +K L  L L  N    +L    L     L  
Sbjct: 64  I--QYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKVK-DL--SSLKDLKKLKS 116

Query: 302 LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQI 359
           LSL  N +       +   L  LYL NN    KI D   LS+ T L  L L +N +   I
Sbjct: 117 LSLEHNGISDINGLVHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQIS-DI 171

Query: 360 PPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVL 419
            P    L+ LQ L +S+N +   + +   L +L  L +                +    +
Sbjct: 172 VP-LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 420 DLRDNEF 426
              D   
Sbjct: 230 KNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 21/230 (9%)

Query: 153 QLKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS 211
           +    NL+  S+    +    +L+ +  I  +++ ++ +     +Q    +  L+L  N 
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNK 79

Query: 212 LSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEM 271
           L+    L + K+ L  L +  NK    L       L +L SL+L  NG      + +  +
Sbjct: 80  LTDIKPLANLKN-LGWLFLDENKVK-DLSSLKD--LKKLKSLSLEHNGI--SDINGLVHL 133

Query: 272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHF 331
            +LESL L +N  +       LS    L  LSL DN +   V     T L  LYL+ N  
Sbjct: 134 PQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-- 188

Query: 332 SGKIQD--GLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379
              I D   L+   +L  L+L +     +      NL     +  ++  L
Sbjct: 189 --HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 47/237 (19%), Positives = 94/237 (39%), Gaps = 21/237 (8%)

Query: 74  LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK 133
                     +L    +T         + S++ +  ++++ + +     L N   +    
Sbjct: 20  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPN---VTKLF 74

Query: 134 LSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFP 192
           L+ + +  + +    L    L  L L    ++ L S  L+ L  L+ + L HN +  I  
Sbjct: 75  LNGNKLT-DIKPLANLK--NLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING 129

Query: 193 SWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLS 252
              L +  +L++LYL NN ++ +  + S    L  L +  N+ S  +    G  L +L +
Sbjct: 130 ---LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIS-DIVPLAG--LTKLQN 182

Query: 253 LNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL 309
           L LS+N        +++ +K L+ L+L S       P    S     + +  +D  L
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 2/99 (2%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
             +  L  L  L LSKN++   L   L+ L ++ VL+L S +      +  +N+     +
Sbjct: 172 VPLAGLTKLQNLYLSKNHI-SDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEF 146
              D +       +   ++ K  V           +  F
Sbjct: 230 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIF 268

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHF 331
            + LDL SN  S  LP +       L  L L+DN LQ     +F    NL  L++ +N  
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 332 S---GKIQDGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPS-S 386
                 + D L    +L EL L  N L   +PP  F +L+ L +L +  N+L  S+P   
Sbjct: 98  QALPIGVFDQL---VNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGV 152

Query: 387 F-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
           F  L+SL+ L ++ N       GA  +   L  L L +N
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 17/191 (8%)

Query: 55  NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 114
           +  +LDL  N L    S     LT +++L L+ N+L      +   +K+LE L + DN  
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 115 EGLFS--FNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
           + L    F+ L     L   +L  N L  +    F  L   +L  L+L    LQ+LP  +
Sbjct: 98  QALPIGVFDQL---VNLAELRLDRNQLKSLPPRVFDSLT--KLTYLSLGYNELQSLPKGV 152

Query: 172 LQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS----GNFQLPSSKHDLL 226
             +L  L+ + L +N+L+ + P       T+L TL L NN L     G F        L 
Sbjct: 153 FDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK---LK 208

Query: 227 RLDISHNKFSC 237
            L +  N + C
Sbjct: 209 MLQLQENPWDC 219

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 18/189 (9%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFS--FNSLKNHSKLQVFKL- 134
              K LDL SN+L+         +  L  L L+DN  + L +  F  LKN   L+   + 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN---LETLWVT 93

Query: 135 SNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPS 193
            N L  +    F  L    L  L L    L++LP  +   L  L ++ L +N+LQ + P 
Sbjct: 94  DNKLQALPIGVFDQLV--NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-PK 150

Query: 194 WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD----LLRLDISHNKFSCQLPGNMGKILPE 249
            +    T L  L L NN L    ++P    D    L  L + +N+   ++P      L +
Sbjct: 151 GVFDKLTSLKELRLYNNQLK---RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEK 206

Query: 250 LLSLNLSEN 258
           L  L L EN
Sbjct: 207 LKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 13/185 (7%)

Query: 200 TKLDTLYLLNNSLSGNFQLPSSKHD----LLRLDISHNKFSCQLPGNMGKILPELLSLNL 255
                L L +N LS    LPS        L  L ++ NK    LP  + K L  L +L +
Sbjct: 37  ADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92

Query: 256 SENGFEGRIPSSM-SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--E 312
           ++N  +  +P  +  ++  L  L L  N     LP +       L++LSL  N LQ   +
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPK 150

Query: 313 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFL 372
            VF   T+L  L L NN      +    K T L  L L NN L       F +L  L+ L
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

Query: 373 DISEN 377
            + EN
Sbjct: 211 QLQEN 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 27/216 (12%)

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM-SEMKRLE 275
           ++PS       L +        +P +    LP +  + +S +    ++ S     + ++ 
Sbjct: 25  RIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKI 335
            +++ +      +    L     L FL + +  L+   +FP+ T                
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK---MFPDLT---------------- 124

Query: 336 QDGLSKATSLLELDLSNNMLYGQIPPW-FGNLSG-LQFLDISENQLCGSVPSSFNLSSLR 393
              +        L++++N     IP   F  L      L +  N        +FN + L 
Sbjct: 125 --KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLD 182

Query: 394 RLYMHMNAFNGSIP-GALRRSLS-LTVLDLRDNEFS 427
            +Y++ N +   I   A     S  ++LD+     +
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 23/166 (13%), Positives = 58/166 (34%), Gaps = 6/166 (3%)

Query: 53  LKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQS-VIANIKSLEYLSLD 110
           L N+  + +S +     L      NL+ +  +++ + +    +    +  +  L++L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 111 DNNFEGLFSFNSLKNHSKLQVFKLS--NSLVKIETEEFPGLPEYQLKALNLRNCSLQALP 168
           +   +       + +     + +++    +  I    F GL   +   L L N    ++ 
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN-ETLTLKLYNNGFTSVQ 172

Query: 169 SILLQQLDLRFIDLSHNK-LQGIFPSWLLQNNTKLDTLYLLNNSLS 213
                   L  + L+ NK L  I         +    L +   S++
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 39/218 (17%), Positives = 79/218 (36%), Gaps = 19/218 (8%)

Query: 75  SNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKL 134
           S     + L L    L        +N+ ++  + +  +        +S  N SK+   ++
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 135 SN--SLVKIETEEFPGLPEYQLKALNLRNCSLQALP--SILLQQLDLRFIDLSHNKLQGI 190
            N  +L  I+ +    LP   LK L + N  L+  P  + +        ++++ N     
Sbjct: 88  RNTRNLTYIDPDALKELP--LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 191 FPSWLLQN-NTKLDTLYLLNNSLS----GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGK 245
            P    Q    +  TL L NN  +      F        L  + ++ NK+   +  +   
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK----LDAVYLNKNKYLTVIDKDAFG 201

Query: 246 ILPELLS-LNLSENGFEGRIPSSMSEMKRLESLDLSSN 282
            +    S L++S+      +PS    ++ L+ L   + 
Sbjct: 202 GVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 42/258 (16%), Positives = 94/258 (36%), Gaps = 42/258 (16%)

Query: 81  KVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS--NS 137
           +   ++   +       I ++  S + L L + +   + S ++  N   +    +S   +
Sbjct: 14  EDFRVTCKDIQ-----RIPSLPPSTQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDVT 67

Query: 138 LVKIETEEFPGLPEYQLKALNLR-NCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWL 195
           L ++E+  F  L   ++  + +R   +L  +    L++L  L+F+ + +  L+       
Sbjct: 68  LQQLESHSFYNLS--KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 196 LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNL 255
           + +      L + +N    +              I  N F          +  E L+L L
Sbjct: 126 VYSTDIFFILEITDNPYMTS--------------IPVNAFQ--------GLCNETLTLKL 163

Query: 256 SENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS-LSFLSLSDNHLQGEVV 314
             NGF   +        +L+++ L+ N +   + +    G +S  S L +S   +     
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT---A 219

Query: 315 FPNS--TNLCWLYLNNNH 330
            P+    +L  L   N  
Sbjct: 220 LPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 16/166 (9%)

Query: 53  LKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIA--NIKSLEYLSL 109
           L  +  +++       ++ P  L  L  +K L + +  L      +    +      L +
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEI 137

Query: 110 DDNNFEGLFSFNSLKN-HSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNL-RNCSLQA 166
            DN +      N+ +   ++    KL  N    ++   F G    +L A+ L +N  L  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT---KLDAVYLNKNKYLTV 194

Query: 167 LPSILLQQL--DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
           +       +      +D+S   +  + PS  L++   L  L   N 
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVTAL-PSKGLEH---LKELIARNT 236

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 302 LSLSDNH---LQGEVVFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYG 357
           L L++N    L+   +F     L  +  +NN  +  I++G    A+ + E+ L++N L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL-E 94

Query: 358 QIPPW-FGNLSGLQFLDISENQLCGSVPS-SF-NLSSLRRLYMHMNAFNGSIPGALRRSL 414
            +    F  L  L+ L +  N++   V + SF  LSS+R L ++ N      PGA     
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 415 SLTVLDLRDN 424
           SL+ L+L  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 11/136 (8%)

Query: 275 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNH-- 330
             L L++N F+             L  ++ S+N +    E  F  ++ +  + L +N   
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 331 -FSGKIQDGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPSSF- 387
               K+  GL    SL  L L +N +   +    F  LS ++ L + +NQ+    P +F 
Sbjct: 95  NVQHKMFKGL---ESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 388 NLSSLRRLYMHMNAFN 403
            L SL  L +  N FN
Sbjct: 151 TLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 78  THIKVLDLSSNQLTG-NLQSVIANIKSLEYLSLDDNNFEGLFS--FNSLKNHSKLQVFKL 134
            +   L L++N+ T      +   +  L  ++  +N    +    F        +    L
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG---VNEILL 88

Query: 135 S-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFP 192
           + N L  ++ + F GL    LK L LR+  +  + +     L  +R + L  N++  +  
Sbjct: 89  TSNRLENVQHKMFKGLE--SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-A 145

Query: 193 SWLLQNNTKLDTLYLLNN 210
                    L TL LL N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 324 LYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCG 381
           L LNNN F+     G+  K   L +++ SNN +   I    F   SG+  + ++ N+L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRL-E 94

Query: 382 SVPSS-F-NLSSLRRLYMHMNAFNGSIP-GALRRSLSLTVLDLRDNEFS 427
           +V    F  L SL+ L +  N     +   +     S+ +L L DN+ +
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 18/156 (11%)

Query: 161 NCS---LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS---- 213
           +CS   L  +P  + Q      + L++N+   +  + + +   +L  +   NN ++    
Sbjct: 17  DCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE 74

Query: 214 GNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM-SEM 271
           G F         +  + ++ N+    +   M K L  L +L L  N     + +     +
Sbjct: 75  GAFEGASG----VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGL 128

Query: 272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 307
             +  L L  N  +  +         SLS L+L  N
Sbjct: 129 SSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
              + E+ L+ N L          L  +K L L SN++T         + S+  LSL DN
Sbjct: 80  ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

Query: 113 NFEGLF--SFNSLKNHSKLQVF 132
               +   +F++L + S L + 
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 343 TSLLELDLSNNMLYGQIPP--WFGNLSGLQFLDISENQLCGSVPSSFN-LSSLRRLYMHM 399
               EL L+NN     +     F  L  L+ ++ S N++      +F   S +  + +  
Sbjct: 32  QYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 400 NAFNGSIPGALRRSLSLTVLDLRDNE 425
           N          +   SL  L LR N 
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNR 116

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 51/281 (18%), Positives = 99/281 (35%), Gaps = 48/281 (17%)

Query: 195 LLQNNTKLDTLYLLNNSLSGN------FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILP 248
                  + +L L  N+L             ++   +  L++S N    +    + +IL 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 249 E----LLSLNLSENGFEGRIPSSMSEM-----KRLESLDLSSNNFSGE----LPRQFLSG 295
                + SLNLS N    +    + +        +  LDL  N+FS +      + F + 
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 296 CFSLSFLSLSDNHLQ-------GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA-----T 343
             S++ L+L  N L         +++     N+  L L  N+ + K    L+K       
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 344 SLLELDLSNNMLYGQIPPWFG-----NLSGLQFLDISENQLCGSVPSSF-----NLSSLR 393
           S+  LDLS N+L  +             + +  L++  N L G    +      +L  L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 394 RLYMHMNAFNG-------SIPGALRRSLSLTVLDLRDNEFS 427
            +Y+  +           ++  A      + ++D    E  
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 50/342 (14%), Positives = 91/342 (26%), Gaps = 55/342 (16%)

Query: 69  HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-----NIKSLEYLSLDDNNF--EGLFSFN 121
            +    S    +  LDLS N L       +         S+  L+L  N+   +      
Sbjct: 13  PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72

Query: 122 SLKNHSKLQVFKLSNSLVKIETEEFPGL------PEYQLKALNLRNCSL-----QALPSI 170
            +       V  L+ S   +  +    L        + +  L+L                
Sbjct: 73  QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132

Query: 171 LLQQ-LDLRFIDLSHNKLQG----IFPSWLLQNNTKLDTLYLLNNSLSGNF------QLP 219
                  +  ++L  N L           L      +++L L  N+L+          L 
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192

Query: 220 SSKHDLLRLDISHNKFSCQLPGNMGKILPE----LLSLNLSENGFEG----RIPSSMSEM 271
           S    +  LD+S N    +    +  I       ++SLNL  N   G     +      +
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 272 KRLESLDLSSNNFSGELPRQF------LSGCFSLSFLSLSDNHLQGEVVFP-------NS 318
           K L+++ L  +        Q             +  +  +   +      P        S
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELS 312

Query: 319 TNLCWLYLNNNHFS-----GKIQDGLSKATSLLELDLSNNML 355
                  L N             + L+    L E   +   L
Sbjct: 313 GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 1e-10
 Identities = 42/226 (18%), Positives = 68/226 (30%), Gaps = 12/226 (5%)

Query: 157 LNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF 216
             L     +           L   +LS  K   +     L++  +L  L   N       
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVL--QSELESCKELQELEPENKWCLLTI 388

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276
            L     D L  +    ++   L             L+   + F         E   +  
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTL---KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGKI 335
           L L+  + +  L    L     ++ L LS N L+           L  L  ++N     +
Sbjct: 446 LHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NV 501

Query: 336 QDGLSKATSLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQLC 380
            DG++    L EL L NN L          +   L  L++  N LC
Sbjct: 502 -DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 49  GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
            + +L  +  LDLS N L   L P L+ L  ++VL  S N L  N+   +AN+  L+ L 
Sbjct: 458 HLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELL 514

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETE 144
           L +N  +   +   L +  +L +  L  NSL + E  
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 50/260 (19%), Positives = 87/260 (33%), Gaps = 38/260 (14%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
              +  E  L K+          +    +   +LS  + T  LQS + + K L+ L  + 
Sbjct: 324 GSDSQKECVLLKDRPEC-WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPE- 380

Query: 112 NNFEGLFSFNSLKNHSKLQVFK-LSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
           N +  L     ++    L   K        ++  +            +LR+  L     +
Sbjct: 381 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD----DLRSKFLLENSVL 436

Query: 171 LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDI 230
            ++  D+R + L+H  L  +     L+    +  L L +N L                  
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLR----------------- 476

Query: 231 SHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290
                   LP  +   L  L  L  S+N  E  +   ++ + RL+ L L +N        
Sbjct: 477 -------ALPPALAA-LRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAI 526

Query: 291 QFLSGCFSLSFLSLSDNHLQ 310
           Q L  C  L  L+L  N L 
Sbjct: 527 QPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 6e-07
 Identities = 39/226 (17%), Positives = 76/226 (33%), Gaps = 33/226 (14%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
            + L   +LS       L   L +   ++ L+  +      +  ++  +  L Y      
Sbjct: 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406

Query: 113 NFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPE-----------------YQLK 155
            F  L + + ++      +         +   E+  +                     + 
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVT 466

Query: 156 ALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN 215
            L+L +  L+ALP  L     L  +  S N L+ +     + N  +L  L L NN L   
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG---VANLPRLQELLLCNNRLQ-- 521

Query: 216 FQLPSSKH-----DLLRLDISHNKFSCQLPGNMGKI---LPELLSL 253
            Q  + +       L+ L++  N   CQ  G   ++   LP + S+
Sbjct: 522 -QSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 46  VNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV--IANIKS 103
           +   +  L+ L  L  S N L  ++   ++NL  ++ L L +N+L     ++  + +   
Sbjct: 478 LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPR 534

Query: 104 LEYLSLDDN 112
           L  L+L  N
Sbjct: 535 LVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 8e-05
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 40/174 (22%)

Query: 49  GICELKNLVELD--------LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN 100
            +     L  +D          ++      S        ++VL L+   LT  L   +  
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQ 461

Query: 101 IKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR 160
           +  + +L L  N    L         + L+                       L+ L   
Sbjct: 462 LLLVTHLDLSHNRLRAL-----PPALAALR----------------------CLEVLQAS 494

Query: 161 NCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS 213
           + +L+ +    +  L  L+ + L +N+LQ       L +  +L  L L  NSL 
Sbjct: 495 DNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 42/279 (15%), Positives = 82/279 (29%), Gaps = 13/279 (4%)

Query: 151 EYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
           E  L     R  ++ +    LL  +D   + +      G      +              
Sbjct: 254 EACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQL 313

Query: 211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSE 270
                  + +         +  ++  C    +      +L    LS       + S +  
Sbjct: 314 PQHTFRVIWTGSDSQKECVLLKDRPECWCRDS--ATDEQLFRCELSVEKST-VLQSELES 370

Query: 271 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNH 330
            K L+ L+  +      +     +    L  L      LQ          +   YL++  
Sbjct: 371 CKELQELEPENKWCLLTIILLMRA----LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426

Query: 331 FSGKIQDGLSK--ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN 388
               +++ + K     +  L L++  L   +      L  +  LD+S N+L    P+   
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAA 484

Query: 389 LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           L  L  L    NA   ++ G +     L  L L +N   
Sbjct: 485 LRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 8e-10
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 315 FPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFL 372
            P + NL  LY+ N      ++   L     L  L +  + L   + P  F     L  L
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRL 85

Query: 373 DISENQLCGSVPSSFNLSSLRRLYMHMNAFN 403
           ++S N L      +    SL+ L +  N  +
Sbjct: 86  NLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 9e-10
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 337 DGLSKATSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISENQLCGSVPSSF-NLSSLRR 394
             L  A +L EL + N      +       L  L+ L I ++ L    P +F     L R
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 395 LYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
           L +  NA   S+     + LSL  L L  N  
Sbjct: 85  LNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 1e-08
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 263 RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTN 320
                +   + L  L + +      L  + L G   L  L++  + L+      F  +  
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 321 LCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 355
           L  L L+ N     +     +  SL EL LS N L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 33  SCRKTNGV----PLTVFVNTGICELKNLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSS 87
               ++G+       +     +   +NL EL +       HL    L  L  ++ L +  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 88  NQLTGNLQSVIANIKSLEYLSLDDNNF----EGLFSFNSLKN 125
           + L             L  L+L  N             SL+ 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 83  LDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKI 141
           L  + +    +L   +   ++L  L +++           L+   +L+   +  + L  +
Sbjct: 13  LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 142 ETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQ 188
             + F   P  +L  LNL   +L++L    +Q L L+ + LS N L 
Sbjct: 72  APDAFHFTP--RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 209 NNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM 268
           + +L     LP +++ L  L I + +    L     + L EL +L + ++G     P + 
Sbjct: 18  DGALDSLHHLPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 269 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 310
               RL  L+LS N     L  + + G  SL  L LS N L 
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWKTVQG-LSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 2/71 (2%)

Query: 359 IPPWFGNLSGLQFLDISENQLCGSVPS-SF-NLSSLRRLYMHMNAFNGSIPGALRRSLSL 416
                     L  L I   Q    +       L  LR L +  +      P A   +  L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 417 TVLDLRDNEFS 427
           + L+L  N   
Sbjct: 83  SRLNLSFNALE 93

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 275 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFS 332
           + L L  N  + +L         +L  L L  N L      VF + T L  L L  N  +
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 333 GKIQDGL-SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPS-SF-NL 389
             +   +  +   L EL +  N L  ++P     L+ L  L + +NQL  S+P  +F  L
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRL 158

Query: 390 SSLRRLYMHMN 400
           SSL   Y+  N
Sbjct: 159 SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 81  KVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFS--FNSLKNHSKLQVFKLS-NS 137
           ++L L  NQ+T     V  ++ +L+ L L  N    L    F+SL     L V  L  N 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ---LTVLDLGTNQ 99

Query: 138 LVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQ 197
           L  + +  F  L    LK L +    L  LP  + +   L  + L  N+L+ I P     
Sbjct: 100 LTVLPSAVFDRLV--HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFD 156

Query: 198 NNTKLDTLYLLNN 210
             + L   YL  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 252 SLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF----SLSFLSLSDN 307
            L L +N      P     +  L+ L L SN     LP     G F     L+ L L  N
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALP----VGVFDSLTQLTVLDLGTN 98

Query: 308 HLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGN 365
            L      VF    +L  L++  N  + ++  G+ + T L  L L  N L       F  
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 366 LSGLQFLDISENQ 378
           LS L    +  N 
Sbjct: 158 LSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 12/83 (14%)

Query: 135 SNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQ----G 189
            N + K+E   F  L    LK L L +  L ALP  +   L  L  +DL  N+L      
Sbjct: 49  DNQITKLEPGVFDSLI--NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106

Query: 190 IFPSWLLQNNTKLDTLYLLNNSL 212
           +F          L  L++  N L
Sbjct: 107 VFDRL-----VHLKELFMCCNKL 124

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 45/160 (28%), Positives = 64/160 (40%), Gaps = 20/160 (12%)

Query: 252 SLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 311
            L+L   G      ++   + +L  L+L  N     L          L  L L++N L  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLAS 97

Query: 312 --EVVFPNSTNLCWLYLNNNHFSGKIQ-------DGLSKATSLLELDLSNNMLYGQIPP- 361
               VF + T L  LYL  N    +++       D L   T L EL L+ N L   IP  
Sbjct: 98  LPLGVFDHLTQLDKLYLGGN----QLKSLPSGVFDRL---TKLKELRLNTNQL-QSIPAG 149

Query: 362 WFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMN 400
            F  L+ LQ L +S NQL      +F  L  L+ + +  N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 10/157 (6%)

Query: 58  ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGL 117
           +LDL    L          LT +  L+L  NQL      V  ++  L  L L +N    L
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 118 FS--FNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQ 174
               F+ L   ++L    L  N L  + +  F  L   +LK L L    LQ++P+    +
Sbjct: 99  PLGVFDHL---TQLDKLYLGGNQLKSLPSGVFDRLT--KLKELRLNTNQLQSIPAGAFDK 153

Query: 175 L-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
           L +L+ + LS N+LQ + P        KL T+ L  N
Sbjct: 154 LTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 46/159 (28%), Positives = 62/159 (38%), Gaps = 14/159 (8%)

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG 286
           +LD+     +  L     + L +L  LNL  N  +        ++  L +L L++N  + 
Sbjct: 39  KLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 287 ELPRQFLSGCF----SLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL- 339
            LP     G F     L  L L  N L+     VF   T L  L LN N     I  G  
Sbjct: 97  SLP----LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 340 SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ 378
            K T+L  L LS N L       F  L  LQ + +  NQ
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 36/124 (29%), Positives = 48/124 (38%), Gaps = 9/124 (7%)

Query: 94  LQSVIANI-KSLEYLSLDDNNFEGLFS--FNSLKNHSKLQVFKLSNSLVKIETEEFPGLP 150
           L SV + I    E L L       L    F  L   + L +    N L  +    F  L 
Sbjct: 26  LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLD--YNQLQTLSAGVFDDLT 83

Query: 151 EYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN 209
             +L  L L N  L +LP  +   L  L  + L  N+L+ + PS +    TKL  L L  
Sbjct: 84  --ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNT 140

Query: 210 NSLS 213
           N L 
Sbjct: 141 NQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 81  KVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFS--FNSLKNHSKLQVFKLSNSL 138
           + LDL S  L     +    +  L +L+LD N  + L +  F+ L     L +   +N L
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA--NNQL 95

Query: 139 VKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQ 197
             +    F  L   QL  L L    L++LPS +  +L  L+ + L+ N+LQ I P+    
Sbjct: 96  ASLPLGVFDHLT--QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFD 152

Query: 198 NNTKLDTLYLLNNSL 212
             T L TL L  N L
Sbjct: 153 KLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 53/204 (25%), Positives = 75/204 (36%), Gaps = 63/204 (30%)

Query: 135 SNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPS 193
           S  L  +    F GL   +L  LNL    LQ L + +   L +L  + L++N+L  + P 
Sbjct: 44  STGLATLSDATFRGLT--KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PL 100

Query: 194 WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSL 253
            +  + T+LD LYL  N      QL S                  LP  +   L +L  L
Sbjct: 101 GVFDHLTQLDKLYLGGN------QLKS------------------LPSGVFDRLTKLKEL 136

Query: 254 NLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF----SLSFLSLSDNHL 309
            L+ N              +L+S+           P    +G F    +L  LSLS N L
Sbjct: 137 RLNTN--------------QLQSI-----------P----AGAFDKLTNLQTLSLSTNQL 167

Query: 310 QG--EVVFPNSTNLCWLYLNNNHF 331
           Q      F     L  + L  N F
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQF 191

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 10/150 (6%)

Query: 248 PELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 307
            E + L+      E ++ +++S +K  + L LS+NN   ++    LSG  +L  LSL  N
Sbjct: 25  AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI--SSLSGMENLRILSLGRN 80

Query: 308 HLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML--YGQIPPWFG 364
            ++  E +   +  L  L+++ N  +  +  G+ K  +L  L +SNN +  +G+I     
Sbjct: 81  LIKKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDK-LA 137

Query: 365 NLSGLQFLDISENQLCGSVPSSFNLSSLRR 394
            L  L+ L ++ N L      +   S  R 
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKENNATSEYRI 167

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 12/133 (9%)

Query: 49  GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
            +  ++NL  L L +N +   +    +    ++ L +S NQ+  +L   I  + +L  L 
Sbjct: 65  SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLY 121

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP 168
           + +N        + L    KL+   L+ + +  + +E     EY       R   ++ LP
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY-------RIEVVKRLP 174

Query: 169 SILLQQLDLRFID 181
           +  L++LD   +D
Sbjct: 175 N--LKKLDGMPVD 185

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 37/185 (20%), Positives = 74/185 (40%), Gaps = 44/185 (23%)

Query: 50  ICELKNLVELDLSKNNLYGHLSP------CLSNLTHIKVLDLSSNQLTGNLQSVIANI-- 101
             E K++V  +  K  L+G + P       LS L   K L LS+N +       I+++  
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-----KISSLSG 68

Query: 102 -KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNL 159
            ++L  LSL  N  + + + +++ +   L+   +S N +  +                  
Sbjct: 69  MENLRILSLGRNLIKKIENLDAVAD--TLEELWISYNQIASLS----------------- 109

Query: 160 RNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLP 219
               ++ L +       LR + +S+NK+        L    KL+ L L  N L  +++  
Sbjct: 110 ---GIEKLVN-------LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

Query: 220 SSKHD 224
           ++  +
Sbjct: 160 NATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 30/191 (15%)

Query: 136 NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWL 195
           +++   E  +     E +   L+     ++ + + L      + + LS N ++ I     
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--- 65

Query: 196 LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNL 255
           L     L  L L  N +     L +    L  L IS+N+ +         +         
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA--------SL--------- 108

Query: 256 SENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVF 315
                     S + ++  L  L +S+N  +       L+    L  L L+ N L  +   
Sbjct: 109 ----------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158

Query: 316 PNSTNLCWLYL 326
            N+T+   + +
Sbjct: 159 NNATSEYRIEV 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 20/158 (12%)

Query: 275 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGK 334
              +L   + +  + +  L+   S+  +  +++ ++         N+ +L L  N    K
Sbjct: 22  IKANLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQGIQYLPNVRYLALGGN----K 74

Query: 335 IQ-----DGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPSS-F 387
           +        L   T+L  L L+ N L   +P   F  L+ L+ L + ENQL  S+P   F
Sbjct: 75  LHDISALKEL---TNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQL-QSLPDGVF 129

Query: 388 N-LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
           + L++L  L +  N       G   +  +LT LDL  N
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 14/164 (8%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L ++ ++  + +++       +  L +++ L L  N+L     S +  + +L YL L  N
Sbjct: 40  LNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGN 95

Query: 113 NFEGLFS--FNSLKNHSKLQVFKL-SNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
             + L +  F+ L   + L+   L  N L  +    F  L    L  LNL +  LQ+LP 
Sbjct: 96  QLQSLPNGVFDKL---TNLKELVLVENQLQSLPDGVFDKLT--NLTYLNLAHNQLQSLPK 150

Query: 170 ILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
            +  +L +L  +DLS+N+LQ + P  +    T+L  L L  N L
Sbjct: 151 GVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 42/185 (22%), Positives = 67/185 (36%), Gaps = 25/185 (13%)

Query: 155 KALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGI--FPSWLLQNNTKLDTLYLLNNSL 212
              NL+  S+    +   +   +  I  +++ ++ +             +  L L  N L
Sbjct: 22  IKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQGIQYL-----PNVRYLALGGNKL 75

Query: 213 S--GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSE 270
                 +      +L  L ++ N+    LP  +   L  L  L L EN  +        +
Sbjct: 76  HDISALK---ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131

Query: 271 MKRLESLDLSSNNFSGELPRQFLSGCF----SLSFLSLSDNHLQG--EVVFPNSTNLCWL 324
           +  L  L+L+ N     LP     G F    +L+ L LS N LQ   E VF   T L  L
Sbjct: 132 LTNLTYLNLAHNQLQ-SLP----KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186

Query: 325 YLNNN 329
            L  N
Sbjct: 187 RLYQN 191

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 302 LSLSDNHLQG---EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYG 357
           L L+DN L     + +F    +L  L L  N  +  I+      A+ + EL L  N +  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI-K 91

Query: 358 QIPP-WFGNLSGLQFLDISENQLCGSVP-SSF-NLSSLRRLYMHMNAFN 403
           +I    F  L  L+ L++ +NQ+   V   SF +L+SL  L +  N FN
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASNPFN 139

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG 333
           +  L L +   +        +   +L FLSL +  L      P    L  L L+ N   G
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG 85

Query: 334 KIQDGLSKATSLLELDLSNNML--YGQIPPWFGNLSGLQFLDISENQLC 380
            +     K  +L  L+LS N L     + P    L  L+ LD+   ++ 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           E  NL  L L    L   +S  L  L  +K L+LS N++ G L  +   + +L +L+L  
Sbjct: 47  EFVNLEFLSLINVGL-ISVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLSN 136
           N  + + +   LK    L+   L N
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 6/125 (4%)

Query: 137 SLVKIETEEFPGLPEYQLKALNLRNCSLQ--ALPSILLQQLDLRFIDLSHNKLQGIFPSW 194
            + +    E        ++ L L NC      +  +  + ++L F+ L +  L  +    
Sbjct: 9   DMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-- 66

Query: 195 LLQNNTKLDTLYLLNNSLSGNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSL 253
            L    KL  L L  N + G    L     +L  L++S NK          K L  L SL
Sbjct: 67  -LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 254 NLSEN 258
           +L   
Sbjct: 126 DLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV--IANIKSLE 105
           + + +L  L +L+LS+N ++G L      L ++  L+LS N+L  ++ ++  +  ++ L+
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLK 123

Query: 106 YLSLDDN 112
            L L + 
Sbjct: 124 SLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 100 NIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALN 158
              ++  L LD+                 L+   L    L+ +     P LP  +LK L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLP--KLKKLE 77

Query: 159 LRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS 213
           L    +     +L ++L  L  ++LS NKL+ I     L+    L +L L N  ++
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 39/203 (19%)

Query: 245 KILPELLSLNLSENGFEGRIPSSMSEM-----KRLESLDLSSNNFSGELPRQFLSGCFSL 299
           ++L  L  LNL+         + ++ +       L+ ++L+S        R  L      
Sbjct: 69  EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 300 SFLSLSDNHLQ-------GEVVFPNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLEL 348
             L L  N L         +++  +   +  L L+NN  +      + +GL+  TS+  L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188

Query: 349 DLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGS--- 405
            L +  L        G+  GL+        L   +  +     L+ L +  N    +   
Sbjct: 189 SLLHTGL--------GD-EGLEL-------LAAQLDRN---RQLQELNVAYNGAGDTAAL 229

Query: 406 -IPGALRRSLSLTVLDLRDNEFS 427
            +  A R   SL +L L  NE S
Sbjct: 230 ALARAAREHPSLELLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 43/301 (14%), Positives = 82/301 (27%), Gaps = 51/301 (16%)

Query: 178 RFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN------FQLPSSKHDLLRLDIS 231
             +D      +     +  +  + L  L L    ++          L S +H L  ++++
Sbjct: 50  ELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA 109

Query: 232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEM-----KRLESLDLSSNNFSG 286
             +        +  +      L L  N         + ++      ++ +L LS+N  + 
Sbjct: 110 SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA 169

Query: 287 ELPRQF---LSGCFSLSFLSLSDNHLQGE------VVFPNSTNLCWLYLNNNHFSGK--- 334
                    L+G  S++ LSL    L  E           +  L  L +  N        
Sbjct: 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229

Query: 335 -IQDGLSKATSLLELDLSNNML----YGQIPPWFGNLSGLQFLDISENQLCG-SVPSSFN 388
            +     +  SL  L L  N L       +    G   G   + +S  +    S   S  
Sbjct: 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVI 289

Query: 389 LSSLRRLYMHMNAFNGS----------------------IPGALRRSLSLTVLDLRDNEF 426
           LS ++R     +                               LR    +  L  +    
Sbjct: 290 LSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

Query: 427 S 427
            
Sbjct: 350 G 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 44/256 (17%), Positives = 73/256 (28%), Gaps = 49/256 (19%)

Query: 53  LKNLVELDLSKNNL----YGHLSPCL-SNLTHIKVLDLSSNQLTGN----LQSVIANIKS 103
                +L L  N+L       L   L  +   I  L LS+N LT      L   +A   S
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 104 LEYLSLDDNNF--EGLFSF-NSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR 160
           + +LSL       EGL      L  + +LQ                          LN+ 
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQE-------------------------LNVA 219

Query: 161 NCSL-----QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN 215
                     AL     +   L  + L  N+L       L       +    +  SL+  
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279

Query: 216 FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKR-- 273
             +      +L     +     +          ELL  +L ++      P   +++ R  
Sbjct: 280 TAVSEYWSVILSEVQRNLNSWDRARVQRH---LELLLRDLEDSRGATLNPWRKAQLLRVE 336

Query: 274 --LESLDLSSNNFSGE 287
             + +L     +    
Sbjct: 337 GEVRALLEQLGSSGSP 352

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 54/302 (17%), Positives = 92/302 (30%), Gaps = 58/302 (19%)

Query: 155 KALNLRNCS--LQALPSILLQQLDLRFIDLSHNKLQGIFPSW------LLQNNTKLDTLY 206
           + L+        Q           LR ++L+  ++  +          L      LD + 
Sbjct: 50  ELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPV--KCTVVAAVLGSGRHALDEVN 107

Query: 207 LLNNSLS--GNFQLPSSKHDLLRLDISHNKFSCQLPGNMG-KILPELLSLNLSENGFEGR 263
           L +  L   G   L        +L +  N       G    K L +LL  +         
Sbjct: 108 LASCQLDPAGLRTLLPVFLRARKLGLQLNSL-----GPEACKDLRDLLLHDQC------- 155

Query: 264 IPSSMSEMKRLESLDLSSNNFSGELPRQF---LSGCFSLSFLSLSDNHLQGE------VV 314
                    ++ +L LS+N  +          L+G  S++ LSL    L  E        
Sbjct: 156 ---------QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206

Query: 315 FPNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLELDLSNNML----YGQIPPWFGNL 366
              +  L  L +  N         +     +  SL  L L  N L       +    G  
Sbjct: 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAA 266

Query: 367 SGLQFLDISENQLCG-SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNE 425
            G   + +S  +    S   S  LS ++R     +         ++R L L + DL D+ 
Sbjct: 267 EGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRAR------VQRHLELLLRDLEDSR 320

Query: 426 FS 427
            +
Sbjct: 321 GA 322

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 36/286 (12%)

Query: 53  LKNLVELDLSKNNLYG----HLSPCL-SNLTHIKVLDLSSNQLTGN-LQSVIANIKSLEY 106
           L +L +L+L+   +       ++  L S    +  ++L+S QL    L++++        
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 107 LSLDDNNF--EGLFSFNSL--KNHSKLQVFKLSNSLVKIETEEF--PGLPE-YQLKALNL 159
           L L  N+   E       L   +  ++   +LSN+ +          GL     +  L+L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 160 RNCSL-----QALPSILLQQLDLRFIDLSHNKLQ---GIFPSWLLQNNTKLDTLYLLNNS 211
            +  L     + L + L +   L+ +++++N       +  +   + +  L+ L+L  N 
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250

Query: 212 LSGN-----FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPS 266
           LS         L  +     R+ +S  +    +      IL E+     S +        
Sbjct: 251 LSSEGRQVLRDLGGAAEGGARVVVSLTE-GTAVSEYWSVILSEVQRNLNSWDRAR----- 304

Query: 267 SMSEMKRLESLDLSSNNFSGELPR---QFLSGCFSLSFLSLSDNHL 309
            +     L   DL  +  +   P    Q L     +  L       
Sbjct: 305 -VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 53/322 (16%), Positives = 98/322 (30%), Gaps = 72/322 (22%)

Query: 68  GHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-----NIKSLEYLSLDDNNF--EGLFSF 120
            +       L+ ++ L+L+  ++T    +V+A        +L+ ++L        GL + 
Sbjct: 62  QNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL 121

Query: 121 NSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL-----QALPSILL-QQ 174
                   L VF                    + + L L+  SL     + L  +LL  Q
Sbjct: 122 --------LPVFL-------------------RARKLGLQLNSLGPEACKDLRDLLLHDQ 154

Query: 175 LDLRFIDLSHNKLQGIFPSWL---LQNNTKLDTLYLLNNSLSGNF------QLPSSKHDL 225
             +  + LS+N L     + L   L  NT +  L LL+  L          QL  ++  L
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ-L 213

Query: 226 LRLDISHNKFS---CQLPGNMGKILPELLSLNLSENGFE-------GRIPSSMSEMKRLE 275
             L++++N              +  P L  L+L  N            +  +     R+ 
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273

Query: 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFS--- 332
                    S             LS +  + N      V  +   L    L ++  +   
Sbjct: 274 VSLTEGTAVSEY-------WSVILSEVQRNLNSWDRARVQRHLELLL-RDLEDSRGATLN 325

Query: 333 -GKIQDGLSKATSLLELDLSNN 353
             +    L     +  L     
Sbjct: 326 PWRKAQLLRVEGEVRALLEQLG 347

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG 333
           ++ L L ++  +             L FLS  +  L      P    L  L L++N  SG
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSG 78

Query: 334 KIQDGLSKATSLLELDLSNNML--YGQIPPWFGNLSGLQFLDISENQLC 380
            ++    K  +L  L+LS N +     I P    L  L+ LD+   ++ 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 49  GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
              E + L  L      L   ++  L  L  +K L+LS N+++G L+ +     +L +L+
Sbjct: 37  LTDEFEELEFLSTINVGL-TSIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLSN 136
           L  N  + L +   LK    L+   L N
Sbjct: 95  LSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 100 NIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALN 158
               ++ L LD++               +L+        L  I     P L   +LK L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN--KLKKLE 70

Query: 159 LRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
           L +  +     +L ++   L  ++LS NK++ +     L+    L +L L N 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 140 KIETEEFPGLPEYQLKALNLRNCSLQ--ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQ 197
           +    E        +K L L N       L  +  +  +L F+   +  L  I     L 
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LP 61

Query: 198 NNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLS 256
              KL  L L +N +SG    L     +L  L++S NK          K L  L SL+L 
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

Query: 257 EN 258
             
Sbjct: 122 NC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 48  TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV--IANIKSLE 105
             + +L  L +L+LS N + G L        ++  L+LS N++  +L ++  +  +++L+
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLK 116

Query: 106 YLSLDDN 112
            L L + 
Sbjct: 117 SLDLFNC 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 253 LNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 312
           + L+    E    +  +   R   LDL        +     +       +  SDN ++  
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL 57

Query: 313 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKA-TSLLELDLSNNML--YGQIPPWFGNLSGL 369
             FP    L  L +NNN    +I +GL +A   L EL L+NN L   G + P   +L  L
Sbjct: 58  DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSL 115

Query: 370 QFLDISENQLC 380
            +L I  N + 
Sbjct: 116 TYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 20/130 (15%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L     +D S N +   L      L  +K L +++N++    + +   +  L  L L +N
Sbjct: 41  LDQFDAIDFSDNEI-RKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 113 NFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
           +   L   + L +   L    +  N +   +               + R   +  +P   
Sbjct: 99  SLVELGDLDPLASLKSLTYLCILRNPVTNKK---------------HYRLYVIYKVPQ-- 141

Query: 172 LQQLDLRFID 181
           ++ LD + + 
Sbjct: 142 VRVLDFQKVK 151

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 32/153 (20%)

Query: 59  LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
           + L+   +    +   +N    + LDL   ++   ++++ A +   + +   DN    L 
Sbjct: 2   VKLTAELI--EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 119 SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DL 177
            F  L+                             LK L + N  +  +   L Q L DL
Sbjct: 59  GFPLLRR----------------------------LKTLLVNNNRICRIGEGLDQALPDL 90

Query: 178 RFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
             + L++N L  +     L +   L  L +L N
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 10/129 (7%)

Query: 181 DLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSC--Q 238
            L+   ++         N  +   L L    +     L ++      +D S N+      
Sbjct: 3   KLTAELIEQAAQ---YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59

Query: 239 LPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS 298
            P      L  L +L ++ N            +  L  L L++N+         L+   S
Sbjct: 60  FPL-----LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 299 LSFLSLSDN 307
           L++L +  N
Sbjct: 115 LTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
           + + L+LR   +  + ++         ID S N+++ +          +L TL + NN +
Sbjct: 20  RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTLLVNNNRI 76

Query: 213 SG-NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSEN 258
                 L  +  DL  L +++N        +    L  L  L +  N
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 49  GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV--IANIKSLEY 106
           G   L+ L  L ++ N +          L  +  L L++N L   L  +  +A++KSL Y
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY 117

Query: 107 LSLDDN 112
           L +  N
Sbjct: 118 LCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 5/128 (3%)

Query: 302 LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPP 361
           + L+   ++    + N+     L L        I++  +       +D S+N +  ++  
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-RKLDG 59

Query: 362 WFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNG-SIPGALRRSLSLTVL 419
            F  L  L+ L ++ N++C         L  L  L +  N+         L    SLT L
Sbjct: 60  -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118

Query: 420 DLRDNEFS 427
            +  N  +
Sbjct: 119 CILRNPVT 126

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 49/334 (14%), Positives = 104/334 (31%), Gaps = 35/334 (10%)

Query: 54  KNLVELDLSKNNL-------YGHLSPCLSNLTHIKVLDLSSNQLTGN-LQSVIANIKSLE 105
           + +  L + +++           L+   ++L  +        +++   L+++  N +SL 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
            + + D     L  F     + +       N  + +  +    +   +L  L L      
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN-SLSGNFQLPSSKHD 224
            +P +      +R +DL +  L+      L+Q    L+ L   N     G   L      
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343

Query: 225 LLRLDISHNKFSCQLPGNMGKI-----------LPELLSLNLSENGFEGR----IPSSMS 269
           L RL I        +    G +             EL  + +  +         I + + 
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403

Query: 270 EMKRLESLDLSSNNFSGELP-----RQFLSGCFSLSFLSLSDNHLQ-----GEVVFPNST 319
            +     + L       +LP     R  L GC  L   +               +   S 
Sbjct: 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463

Query: 320 NLCWLYLNNNHFSGK-IQDGLSKATSLLELDLSN 352
           N+ W+ L     S + + +      +L +L++  
Sbjct: 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 47/299 (15%), Positives = 94/299 (31%), Gaps = 32/299 (10%)

Query: 155 KALNLRNCSLQALPSIL-----LQQLDLR------FIDLSHNKLQGIFPSW---LLQNNT 200
           + + +  C       +      L+ L L+        +L      G    W   +  N  
Sbjct: 53  EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112

Query: 201 KLDTLYLLNNSLS--GNFQLPSSKHDLLR-LDISH-NKFSCQLPGNMGKILPELLSLNLS 256
           +L +++     +S     +L  ++ D L  L +   + F+     ++     ++ +L + 
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 257 ENGFEGRIPSSMSEM----KRLESLDLSSNNFSG---ELPRQFLSGCFSLSFLSLSDNHL 309
           E+ F  +    + E+      LE L+     F+    +        C SL  + + D  +
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232

Query: 310 QGEVVF----PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGN 365
              V F     N    C   LN +    +    L     L  L LS       +P  F  
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPF 291

Query: 366 LSGLQFLDISENQL--CGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLR 422
            + ++ LD+    L             +L  L       +  +    +    L  L + 
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 302 LSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQ 358
           L L  N LQ     VF   T L  L L+ N     + DG+  K T L  L L  N L   
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL-QS 90

Query: 359 IPP-WFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMN 400
           +P   F  L+ L+ L +  NQL  SVP      L+SL+++++H N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 135 SNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPS 193
           SN L  +    F  L   QL  L+L    +Q+LP  +  +L  L  + L  NKLQ + P+
Sbjct: 37  SNKLQSLPHGVFDKLT--QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PN 93

Query: 194 WLLQNNTKLDTLYLLNNSL 212
            +    T+L  L L  N L
Sbjct: 94  GVFDKLTQLKELALDTNQL 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 72/406 (17%), Positives = 119/406 (29%), Gaps = 125/406 (30%)

Query: 4   LAKPIIKKPQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGIC------ELKN-L 56
           L  PI  + +       Q   +T + +E   R  N     VF    +       +L+  L
Sbjct: 94  LMSPIKTEQR-------QPSMMTRMYIEQRDRLYNDNQ--VFAKYNVSRLQPYLKLRQAL 144

Query: 57  VELDLSKN-NLYGHL----SPCLSN--LTHIKVLDLSSNQ---LT-GNLQS---VIANIK 102
           +EL  +KN  + G L    +  ++       KV      +   L   N  S   V+  ++
Sbjct: 145 LELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 103 SL------EYLSLDDNNFEGLFSFNSLKNHSK--LQVFKLSNSLV---KIETEEFPGLPE 151
            L       + S  D++       +S++   +  L+     N L+    ++  +      
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA----- 258

Query: 152 YQLKALNLRNCSLQALPSILLQQLDLRFID-LSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
               A NL  C       ILL     +  D LS      I         T  +   LL  
Sbjct: 259 --WNAFNLS-CK------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSE 270
            L    Q                     LP  +    P  LS+          I  S+ +
Sbjct: 310 YLDCRPQ--------------------DLPREVLTTNPRRLSI----------IAESIRD 339

Query: 271 M-------------KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN 317
                         K    ++ S N       R+         F  LS        VFP 
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--------FDRLS--------VFPP 383

Query: 318 STN-----LC--WLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY 356
           S +     L   W  +  +     + + L K  SL+E     + + 
Sbjct: 384 SAHIPTILLSLIWFDVIKS-DVMVVVNKLHKY-SLVEKQPKESTIS 427

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 39/224 (17%), Positives = 78/224 (34%), Gaps = 56/224 (25%)

Query: 53  LKNLVELDLSKNNLYGHLS--PCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
           L  L   +  K  ++  LS  P  +++    +L L    +  +   V+ N K  +Y  ++
Sbjct: 363 LNVLEPAEYRK--MFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVN-KLHKYSLVE 418

Query: 111 DNNFEGLFSFNSLKNHSKLQV---FKLSNSLV-------KIETEEFPGLPE--------- 151
               E   S  S+    K+++   + L  S+V         ++++               
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 152 YQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTL-----Y 206
           + LK +      +     + L   D RF++    K++    +W    +  L+TL     Y
Sbjct: 479 HHLKNIEHPE-RMTLFRMVFL---DFRFLE---QKIRHDSTAWNASGSI-LNTLQQLKFY 530

Query: 207 -----------------LLNNSLSGNFQLPSSKH-DLLRLDISH 232
                            +L+        L  SK+ DLLR+ +  
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 43/306 (14%), Positives = 99/306 (32%), Gaps = 33/306 (10%)

Query: 153 QLKALNLRNCSLQALPSIL-----LQQLDLR---------FIDLSHNKLQGIFPSWLLQN 198
             + + + NC   +  +++     ++ ++L+          +          +   +  +
Sbjct: 44  CRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS 103

Query: 199 NTKLDTLYLLNNSLSGN--FQLPSSKHDLLRLDISH-NKFSCQLPGNMGKILPELLSLNL 255
            T L+ + L    ++ +    +  S  +   L +S    FS      +      L  L+L
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 256 SENGFEGRIPSSMSEM----KRLESLDLS--SNNFSGELPRQFLSGCFSLSFLSLSD--N 307
            E+  +      +S        L SL++S  ++  S     + ++ C +L  L L+    
Sbjct: 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223

Query: 308 HLQGEVVFPNSTNLCWLYLN------NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPP 361
             +   +   +  L  L                +   LS    L  L    + +   +P 
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283

Query: 362 WFGNLSGLQFLDISENQLC--GSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVL 419
            +   S L  L++S   +     V        L+RL++     +  +         L  L
Sbjct: 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLREL 343

Query: 420 DLRDNE 425
            +  +E
Sbjct: 344 RVFPSE 349

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 65/341 (19%), Positives = 125/341 (36%), Gaps = 46/341 (13%)

Query: 53  LKNLVELDLSKNNLYG----HLSPCLSNLTHIKVLDLS--SNQLTGN-LQSVIANIKSLE 105
            +NL ELDL ++++       LS      T +  L++S  +++++ + L+ ++    +L+
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214

Query: 106 YLSLDDN-NFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL 164
            L L+     E L +   L+   +L+         ++  + + GL         LR  S 
Sbjct: 215 SLKLNRAVPLEKLATL--LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 165 ------QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN-SLSGNFQ 217
                   LP++      L  ++LS+  +Q      LL    KL  L++L+    +G   
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332

Query: 218 LPSSKHDLLRLDISHNKFSCQLPGN---------MGKILPELLSL-----NLSENGFEGR 263
           L S+  DL  L +  ++     P           +    P+L S+      ++       
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT- 391

Query: 264 IPSSMSEMKRLE-------SLDLSSNNFSGELPRQFLSGCFSLSFLSLS----DNHLQGE 312
           I  +   M R         + D  +           +  C  L  LSLS    D     E
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVF--E 449

Query: 313 VVFPNSTNLCWLYLNNNHFSGK-IQDGLSKATSLLELDLSN 352
            +   +  +  L +     S   +   LS   SL +L++ +
Sbjct: 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 48/269 (17%), Positives = 96/269 (35%), Gaps = 38/269 (14%)

Query: 55  NLVELDLSKNNLYGHLSPCL----SNLTHIKVLDLSSNQLTGN-LQSVIANIKSLEYLSL 109
           +  + +L  +   G++ P +    S+ T ++ + L    +T + L+ +  + K+ + L L
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 110 DDNNF---EGLFSFNSLKNHSKLQVFKLSNSLVKIETEE-FPGLPEY--QLKALNLRNCS 163
                   +GL +         L+   L  S V   +       P+    L +LN+   +
Sbjct: 138 SSCEGFSTDGLAAI--AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195

Query: 164 LQ----ALPSILLQQLDLRFIDLSHN-KLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQL 218
            +    AL  ++ +  +L+ + L+    L+ +    LLQ   +L+ L     +      +
Sbjct: 196 SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT--LLQRAPQLEELGTGGYTAEVRPDV 253

Query: 219 PSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLD 278
            S     L                      EL  L+   +     +P+  S   RL +L+
Sbjct: 254 YSGLSVALSG------------------CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 279 LSSNNFSGELPRQFLSGCFSLSFLSLSDN 307
           LS          + L  C  L  L + D 
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 49/270 (18%), Positives = 87/270 (32%), Gaps = 23/270 (8%)

Query: 53  LKNLVELDLSK------NNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEY 106
              L EL           ++Y  LS  LS    ++ L    + +   L +V +    L  
Sbjct: 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 107 LSLDDNNF--EGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEY--QLKALNLRNC 162
           L+L         L     L    KLQ   + +    IE      L      L+ L +   
Sbjct: 294 LNLSYATVQSYDLVKL--LCQCPKLQRLWVLD---YIEDAGLEVLASTCKDLRELRVFPS 348

Query: 163 -SLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKL--DTLYLLNNSLSGNFQLP 219
                 P++ L +  L  + +   KL+      +L    ++    L  +  +     +  
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLE-----SVLYFCRQMTNAALITIARNRPNMTRFR 403

Query: 220 SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL 279
               +    D    +      G + +   +L  L+LS    +       +  K++E L +
Sbjct: 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSV 463

Query: 280 SSNNFSGELPRQFLSGCFSLSFLSLSDNHL 309
           +    S       LSGC SL  L + D   
Sbjct: 464 AFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 81  KVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFS--FNSLKNHSKLQVFKLSNSL 138
             LDL +N L      V   + SL  L L  N  + L +  FN L + + L +   +N L
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS--TNQL 88

Query: 139 VKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQ 197
             +    F  L   QLK L L    LQ+LP  +  +L  L+ + L  N+L+ + P  +  
Sbjct: 89  QSLPNGVFDKLT--QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFD 145

Query: 198 NNTKLDTLYLLNN 210
             T L  ++L +N
Sbjct: 146 RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 94  LQSVIANI-KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKL-SNSLVKIETEEFPGLPE 151
             SV   I     YL L+ N+ + L         + L    L  N L  +    F  L  
Sbjct: 19  RTSVPTGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77

Query: 152 YQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
             L  LNL    LQ+LP+ +  +L  L+ + L+ N+LQ + P  +    T+L  L L  N
Sbjct: 78  --LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL-PDGVFDKLTQLKDLRLYQN 134

Query: 211 SL 212
            L
Sbjct: 135 QL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 252 SLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF----SLSFLSLSDN 307
            L+L  N  +        E+  L  L L  N     LP    +G F    SL++L+LS N
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP----NGVFNKLTSLTYLNLSTN 86

Query: 308 HLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPPWFG 364
            LQ     VF   T L  L LN N     + DG+  K T L +L L  N L       F 
Sbjct: 87  QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145

Query: 365 NLSGLQFLDISENQ 378
            L+ LQ++ + +N 
Sbjct: 146 RLTSLQYIWLHDNP 159

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 28/171 (16%)

Query: 153 QLKALNLRNC---SLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN 209
            L  L ++     S+   P   L+ L++    L  + ++ I  S  L N  KL  LY+  
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS-DLPNLEKLV-LYVGV 230

Query: 210 NSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMS 269
                +  +   +                         P L  L + +   +  +     
Sbjct: 231 EDYGFDGDMNVFRPLFS-----------------KDRFPNLKWLGIVDAEEQNVVVEMFL 273

Query: 270 E---MKRLESLDLSSNNFSGELPRQFLSGC---FSLSFLSLSDNHLQGEVV 314
           E   + +LE++D+S+   + E  R  L        L F+++  N+L  E+ 
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 347 ELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGS 405
           EL L  N     +P    N   L  +D+S N++      SF N++ L  L +  N     
Sbjct: 35  ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-C 92

Query: 406 IP-GALRRSLSLTVLDLRDNE 425
           IP        SL +L L  N+
Sbjct: 93  IPPRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 275 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFS 332
             L L  N F+  +P++  S    L+ + LS+N +       F N T L  L L+ N   
Sbjct: 34  TELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 333 GKIQDGL-SKATSLLELDLSNNMLYGQIPPW--FGNLSGLQFLDISENQL 379
             I         SL  L L  N +   + P   F +LS L  L I  N L
Sbjct: 92  C-IPPRTFDGLKSLRLLSLHGNDI--SVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 94  LQSVIANI-KSLEYLSLDDNNFEGLFS-FNSLKNHSKLQVFKLS-NSLVKIETEEFPGLP 150
           L+ +   I + +  L LD N F  +    ++ K    L +  LS N +  +  + F  + 
Sbjct: 22  LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYK---HLTLIDLSNNRISTLSNQSFSNMT 78

Query: 151 EYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN 209
             QL  L L    L+ +P      L  LR + L  N +  + P     + + L  L +  
Sbjct: 79  --QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGA 135

Query: 210 N 210
           N
Sbjct: 136 N 136

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 14/100 (14%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 54  KNLVELDLSKNNLYG-----HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI----KSL 104
            +L E++L+             +  L   T++K   +   +    +   +A +     +L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 105 EYLSLDDNNF--EGLFSF-NSLKNHSKLQVFKLSNSLVKI 141
           + L+++ N     G+ +   +L++++ L   ++ N    +
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	428
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.23
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.9
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.27
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	87.29
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	81.24

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.6e-42  Score=343.81  Aligned_cols=91  Identities=35%  Similarity=0.569  Sum_probs=83.2

Q ss_pred             hhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCC
Q 042919          338 GLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSL  416 (428)
Q Consensus       338 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  416 (428)
                      .+..+++|+.|++++|.+++.+|..+++++.|+.|+|++|++++.+|..+ .+++|+.|++++|++++..|..++.+++|
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L  706 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML  706 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred             hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence            44556789999999999998999999999999999999999999999888 89999999999999999999999999999


Q ss_pred             CEEECCCCccCC
Q 042919          417 TVLDLRDNEFSG  428 (428)
Q Consensus       417 ~~L~l~~~~~~~  428 (428)
                      +.|++++|+++|
T Consensus       707 ~~L~ls~N~l~g  718 (768)
T 3rgz_A          707 TEIDLSNNNLSG  718 (768)
T ss_dssp             SEEECCSSEEEE
T ss_pred             CEEECcCCcccc
Confidence            999999999886

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.2e-40  Score=326.36  Aligned_cols=394  Identities=21%  Similarity=0.203  Sum_probs=253.1

Q ss_pred             ceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCC
Q 042919           24 SITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS  103 (428)
Q Consensus        24 ~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  103 (428)
                      .++++.+...       .++.+.+.+|+++++|++|++++|.+....|..|.++++|++|++++|.+....+..++++++
T Consensus        34 ~l~~L~Ls~n-------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  106 (606)
T 3t6q_A           34 STECLEFSFN-------VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA  106 (606)
T ss_dssp             TCCEEECTTC-------CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred             cCcEEEccCC-------ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence            4566766652       255666788999999999999999998888888999999999999999998777888999999


Q ss_pred             CcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc-ccCCCCCCCcCCccEEEcCCCCCccc-hhHhhhCCCcc--E
Q 042919          104 LEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNLRNCSLQAL-PSILLQQLDLR--F  179 (428)
Q Consensus       104 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~--~  179 (428)
                      |++|++++|.+.++.+ ..++.+++|++|++++|.+.. ....+...  ++|++|++++|.+..+ +..+..+++|+  .
T Consensus       107 L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~  183 (606)
T 3t6q_A          107 LKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKLPKGFPT--EKLKVLDFQNNAIHYLSKEDMSSLQQATNLS  183 (606)
T ss_dssp             CCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCCCTTCCC--TTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred             ccEeeccccCcccCCc-chhccCCcccEEECCCCcccccCcccccCC--cccCEEEcccCcccccChhhhhhhcccceeE
Confidence            9999999999887633 468899999999999988755 33444443  3599999999988766 56677788887  7


Q ss_pred             EEccCCcCCCCCchh-----------------------------------------------------------------
Q 042919          180 IDLSHNKLQGIFPSW-----------------------------------------------------------------  194 (428)
Q Consensus       180 L~l~~~~~~~~~~~~-----------------------------------------------------------------  194 (428)
                      |++++|.+....+..                                                                 
T Consensus       184 L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~  263 (606)
T 3t6q_A          184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK  263 (606)
T ss_dssp             EECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred             EecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence            777777654332211                                                                 


Q ss_pred             ---------hhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCC-
Q 042919          195 ---------LLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRI-  264 (428)
Q Consensus       195 ---------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-  264 (428)
                               .+..+++|++|++++|.+...+.....+++|++|++++|.+.+..+..+.. +++|++|++++|.+.... 
T Consensus       264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~  342 (606)
T 3t6q_A          264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLSIKGNTKRLELG  342 (606)
T ss_dssp             CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG-CTTCSEEECCSCSSCCBCC
T ss_pred             CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhc-cCcCCEEECCCCCcccccc
Confidence                     124456666666666666655555556666667777666665333333333 566666666666554222 


Q ss_pred             CccccCCCCCCEEECcCcccCCCCc-hhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeecccCccCccch-hhhh
Q 042919          265 PSSMSEMKRLESLDLSSNNFSGELP-RQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQ-DGLS  340 (428)
Q Consensus       265 ~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~l~  340 (428)
                      +..+..+++|++|++++|.+.+... ...+..+++|+.|++++|.+....  .+..+++|++|++++|.+.+..+ ..+.
T Consensus       343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  422 (606)
T 3t6q_A          343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ  422 (606)
T ss_dssp             SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred             hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence            2335556666666666665542110 222445556666666655554332  24455556666665555543332 2255


Q ss_pred             cCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCC---CCcc-ccccCceEEccCCcCCccCCcccccCCCC
Q 042919          341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV---PSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSL  416 (428)
Q Consensus       341 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~---~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  416 (428)
                      .+++|+.|++++|.+++..+..+..+++|++|++++|++++..   +..+ .+++|+.|++++|.+.+..|..|+.+++|
T Consensus       423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM  502 (606)
T ss_dssp             TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence            5566666666666665555555666666666666666655421   1222 55666666666666665556666666666


Q ss_pred             CEEECCCCccCC
Q 042919          417 TVLDLRDNEFSG  428 (428)
Q Consensus       417 ~~L~l~~~~~~~  428 (428)
                      +.|++++|+++|
T Consensus       503 ~~L~Ls~N~l~~  514 (606)
T 3t6q_A          503 NHVDLSHNRLTS  514 (606)
T ss_dssp             CEEECCSSCCCG
T ss_pred             CEEECCCCccCc
Confidence            666666666553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.9e-41  Score=329.55  Aligned_cols=395  Identities=24%  Similarity=0.209  Sum_probs=242.7

Q ss_pred             cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCC
Q 042919           23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK  102 (428)
Q Consensus        23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  102 (428)
                      ..++++.+.. |      .+....|.+|+++++|++|++++|.+.+..|..|.++++|++|++++|.+....+..+.+++
T Consensus        57 ~~L~~L~Ls~-n------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~  129 (606)
T 3t6q_A           57 INLTFLDLTR-C------QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK  129 (606)
T ss_dssp             TTCSEEECTT-C------CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred             ccceEEECCC-C------ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence            4566666655 2      24556667788888888888888887766677777888888888888877765566677777


Q ss_pred             CCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccc--------------------------c-CCCCC-------
Q 042919          103 SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIE--------------------------T-EEFPG-------  148 (428)
Q Consensus       103 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------------------~-~~~~~-------  148 (428)
                      +|++|++++|.+.++..+. +..+++|++|++++|.+...                          . ..+..       
T Consensus       130 ~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~  208 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN  208 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             cccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence            7777777777766543222 22255555555554433211                          0 00000       


Q ss_pred             ------------------------------------------------------------------CCcCCccEEEcCCC
Q 042919          149 ------------------------------------------------------------------LPEYQLKALNLRNC  162 (428)
Q Consensus       149 ------------------------------------------------------------------~~~~~L~~L~l~~~  162 (428)
                                                                                        ...++|++|++++|
T Consensus       209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  288 (606)
T 3t6q_A          209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT  288 (606)
T ss_dssp             CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred             cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence                                                                              00123444555555


Q ss_pred             CCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc--ccCCCCCCCccEEecCCCccccCC-
Q 042919          163 SLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN--FQLPSSKHDLLRLDISHNKFSCQL-  239 (428)
Q Consensus       163 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~-  239 (428)
                      .+..+|..+..+++|+.|++++|.+....+.. +..+++|+.|++++|.+...  ......+++|++|++++|.+.+.. 
T Consensus       289 ~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  367 (606)
T 3t6q_A          289 HLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC  367 (606)
T ss_dssp             CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred             ccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence            44445444444555555555555544332222 23455555555555544321  112345566666666666654322 


Q ss_pred             -CchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC
Q 042919          240 -PGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP  316 (428)
Q Consensus       240 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~  316 (428)
                       +..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+.....  +.
T Consensus       368 ~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  446 (606)
T 3t6q_A          368 CNLQLRN-LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD  446 (606)
T ss_dssp             STTTTTT-CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred             cchhccc-CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence             223333 56666666666666555556666677777777777766544444445666777777777776665433  56


Q ss_pred             CCCCcceeecccCccCcc---chhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccC
Q 042919          317 NSTNLCWLYLNNNHFSGK---IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSL  392 (428)
Q Consensus       317 ~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L  392 (428)
                      .+++|++|++++|.+.+.   ....+..+++|+.|++++|.+++..|..+.++++|+.|++++|++++..+..+ .+++|
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence            677777777777776542   22456677777777777777776667777777777777777777777666666 67777


Q ss_pred             ceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          393 RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       393 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                       .|++++|++++..|..+..+++|+.|++++||+++
T Consensus       527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence             77777777776667777777788888888887654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.4e-41  Score=339.45  Aligned_cols=375  Identities=31%  Similarity=0.431  Sum_probs=223.1

Q ss_pred             ccccCCCCCcEEeccCCcCCCCchH--hhhcCCCCCEEEccCCccCcchhhhh-ccCCCCcEEeCCCCccCCccccc--c
Q 042919           48 TGICELKNLVELDLSKNNLYGHLSP--CLSNLTHIKVLDLSSNQLTGNLQSVI-ANIKSLEYLSLDDNNFEGLFSFN--S  122 (428)
Q Consensus        48 ~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~--~  122 (428)
                      +.++++++|++|++++|.+.+..|.  .+.++++|++|++++|.+....+..+ .++++|++|++++|.+.+..+..  .
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  173 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL  173 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred             hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence            6788888888888888888776776  78888888888888887765555443 67788888888888776553321  1


Q ss_pred             ccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCC
Q 042919          123 LKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKL  202 (428)
Q Consensus       123 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  202 (428)
                      +.++++|++|++++|.+...... .  ...+|++|++++|.+......+..+++|++|++++|.+....+..+ ..+++|
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~~-~--~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L  249 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVDV-S--RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI-STCTEL  249 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCBC-T--TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT-TTCSSC
T ss_pred             hccCCCCCEEECCCCcccccCCc-c--cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH-hcCCCC
Confidence            66777777877777766433222 2  2234777888777775433337777777888887777775555544 567777


Q ss_pred             CEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCc
Q 042919          203 DTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN  282 (428)
Q Consensus       203 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (428)
                      ++|++++|.+.+..... .+++|++|++++|.+.+.++..+...+++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus       250 ~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  328 (768)
T 3rgz_A          250 KLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN  328 (768)
T ss_dssp             CEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred             CEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence            77777777765433222 55666666666666665555555543466666666666665555555666666666666666


Q ss_pred             ccCCCCchhhhcCCCCCCEEeCCCcccccc-------------------------cc--cCC--CCCcceeecccCccCc
Q 042919          283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGE-------------------------VV--FPN--STNLCWLYLNNNHFSG  333 (428)
Q Consensus       283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------------------~~--~~~--~~~L~~L~l~~~~~~~  333 (428)
                      .+.+.++...+..+++|+.|++++|.+.+.                         ..  +..  +++|++|++++|.+++
T Consensus       329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  408 (768)
T 3rgz_A          329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG  408 (768)
T ss_dssp             EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred             cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence            655455544445555555555555544311                         00  111  3445555555555544


Q ss_pred             cchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCccccc
Q 042919          334 KIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRR  412 (428)
Q Consensus       334 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~  412 (428)
                      ..+..+.++++|+.|++++|.+++..|..+.++++|+.|++++|.+++..+..+ .+++|+.|++++|++.+..|..++.
T Consensus       409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  488 (768)
T 3rgz_A          409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN  488 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence            444555555555555555555554445555555555555555554444444433 4444444444444444444444444


Q ss_pred             CCCCCEEECCCCccC
Q 042919          413 SLSLTVLDLRDNEFS  427 (428)
Q Consensus       413 ~~~L~~L~l~~~~~~  427 (428)
                      +++|+.|++++|+++
T Consensus       489 l~~L~~L~L~~N~l~  503 (768)
T 3rgz_A          489 CTNLNWISLSNNRLT  503 (768)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCCCCEEEccCCccC
Confidence            444444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-39  Score=320.24  Aligned_cols=380  Identities=21%  Similarity=0.187  Sum_probs=256.2

Q ss_pred             eeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccc
Q 042919           42 LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFN  121 (428)
Q Consensus        42 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  121 (428)
                      +..+.|.+|.++++|++|++++|.+....|..|.++++|++|++++|.+....+..++++++|++|++++|.+.+...+.
T Consensus        68 l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~  147 (606)
T 3vq2_A           68 IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA  147 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH
Confidence            44555666777777777777777777666777777777777777777776555556777777777777777776544356


Q ss_pred             cccCCCCCcEEEccCCcccccc-CCCCC-------------------------CCcCCccEEEcCCCCCc----------
Q 042919          122 SLKNHSKLQVFKLSNSLVKIET-EEFPG-------------------------LPEYQLKALNLRNCSLQ----------  165 (428)
Q Consensus       122 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~-------------------------~~~~~L~~L~l~~~~~~----------  165 (428)
                      .++++++|++|++++|.+.... ..+..                         ....+|+++++++|.+.          
T Consensus       148 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~  227 (606)
T 3vq2_A          148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN  227 (606)
T ss_dssp             GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHT
T ss_pred             hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcc
Confidence            6777888888888776653221 11100                         01113455555444321          


Q ss_pred             -------------------------------------------------cchhHhhhCCCccEEEccCCcCCCCCchhhh
Q 042919          166 -------------------------------------------------ALPSILLQQLDLRFIDLSHNKLQGIFPSWLL  196 (428)
Q Consensus       166 -------------------------------------------------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  196 (428)
                                                                       .++. +..+++|+.|+++++.+... +  .+
T Consensus       228 l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~--~l  303 (606)
T 3vq2_A          228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E--DV  303 (606)
T ss_dssp             TTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C--CC
T ss_pred             ccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h--hc
Confidence                                                             0011 22334455555555544322 2  12


Q ss_pred             hcCCCCCEEEecCCccCCcc--------------------cCCCCCCCccEEecCCCccccC--CCchhhhcCCCCcEEE
Q 042919          197 QNNTKLDTLYLLNNSLSGNF--------------------QLPSSKHDLLRLDISHNKFSCQ--LPGNMGKILPELLSLN  254 (428)
Q Consensus       197 ~~~~~L~~L~l~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~  254 (428)
                      ..+++|+.|++++|.+....                    .....+++|+.|++++|.+.+.  .+..+.. +++|++|+
T Consensus       304 ~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~  382 (606)
T 3vq2_A          304 PKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLD  382 (606)
T ss_dssp             CTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEE
T ss_pred             cccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeE
Confidence            34444455554444442221                    1233566777777777766533  1344433 77888888


Q ss_pred             ccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccC
Q 042919          255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFS  332 (428)
Q Consensus       255 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~  332 (428)
                      +++|.+.. .+..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+....+  +..+++|++|++++|.+.
T Consensus       383 L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  461 (606)
T 3vq2_A          383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK  461 (606)
T ss_dssp             CCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence            88887763 456777888888888888888755554557788888888888888776443  778888999999888887


Q ss_pred             c-cchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCccc
Q 042919          333 G-KIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGAL  410 (428)
Q Consensus       333 ~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~  410 (428)
                      + ..+..+..+++|+.|++++|.+++..|..+.++++|+.|++++|++++..+..+ .+++|+.|++++|+++ .+|..+
T Consensus       462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~  540 (606)
T 3vq2_A          462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL  540 (606)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred             CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence            6 356778888889999999998887778888888899999999998887777777 7888999999999888 666668


Q ss_pred             ccCC-CCCEEECCCCccCC
Q 042919          411 RRSL-SLTVLDLRDNEFSG  428 (428)
Q Consensus       411 ~~~~-~L~~L~l~~~~~~~  428 (428)
                      ..++ +|+.|++++||+++
T Consensus       541 ~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          541 QHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             GGSCTTCCEEECCSCCCCC
T ss_pred             hhhcccCcEEEccCCCccc
Confidence            8886 59999999988764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-39  Score=321.01  Aligned_cols=348  Identities=20%  Similarity=0.259  Sum_probs=282.6

Q ss_pred             chHhhhcCCCCCEEEccCCccCcc-----------------hhhhhc--cCCCCcEEeCCCCccCCccccccccCCCCCc
Q 042919           70 LSPCLSNLTHIKVLDLSSNQLTGN-----------------LQSVIA--NIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQ  130 (428)
Q Consensus        70 ~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  130 (428)
                      +|..+.++++|++|++++|.+++.                 .|..+.  ++++|++|++++|.+.+..+ ..++++++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCC
Confidence            567788899999999999988864                 788877  89999999999998776544 6788899999


Q ss_pred             EEEccCCc-ccc--ccCCCCCC----CcCCccEEEcCCCCCccchh--HhhhCCCccEEEccCCcCCCCCchhhhhcCCC
Q 042919          131 VFKLSNSL-VKI--ETEEFPGL----PEYQLKALNLRNCSLQALPS--ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTK  201 (428)
Q Consensus       131 ~L~l~~~~-~~~--~~~~~~~~----~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  201 (428)
                      +|++++|. +..  .+..+..+    ..++|++|++++|.+..+|.  .+..+++|+.|++++|.+...++ . +..+++
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~  354 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIK  354 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCC
Confidence            99999886 542  23222221    11359999999999988888  88899999999999998875566 3 467889


Q ss_pred             CCEEEecCCccCCcccCCCCCCC-ccEEecCCCccccCCCchhhhc-CCCCcEEEccCCCCCCCCCcccc-------CCC
Q 042919          202 LDTLYLLNNSLSGNFQLPSSKHD-LLRLDISHNKFSCQLPGNMGKI-LPELLSLNLSENGFEGRIPSSMS-------EMK  272 (428)
Q Consensus       202 L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~-------~~~  272 (428)
                      |+.|++++|.+...+.....+++ |+.|++++|.+. .++..+... +++|+.|++++|.+.+..|..+.       .++
T Consensus       355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI  433 (636)
T ss_dssp             ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred             CCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence            99999999988866566677888 999999999988 677655431 34899999999999887777777       788


Q ss_pred             CCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC-------CCCCcceeecccCccCccchhhhh--c
Q 042919          273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP-------NSTNLCWLYLNNNHFSGKIQDGLS--K  341 (428)
Q Consensus       273 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~-------~~~~L~~L~l~~~~~~~~~~~~l~--~  341 (428)
                      +|++|++++|.+. .++...+..+++|+.|++++|.+.....  +.       .+++|++|++++|.++ ..+..+.  .
T Consensus       434 ~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~  511 (636)
T 4eco_A          434 NVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT  511 (636)
T ss_dssp             CEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred             CCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence            9999999999998 7888778889999999999999884333  22       2339999999999998 4555665  8


Q ss_pred             CCCCcEEEccCCcccccCCcccCCCCCCcEEeC------CCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCC
Q 042919          342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDI------SENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSL  414 (428)
Q Consensus       342 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L------~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~  414 (428)
                      +++|+.|++++|.+++ +|..+.++++|+.|++      ++|++.+..+..+ .+++|+.|++++|++. .+|..+.  +
T Consensus       512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~  587 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--P  587 (636)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--T
T ss_pred             CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--C
Confidence            9999999999999995 8889999999999999      5677787888777 8999999999999995 7787765  7


Q ss_pred             CCCEEECCCCccC
Q 042919          415 SLTVLDLRDNEFS  427 (428)
Q Consensus       415 ~L~~L~l~~~~~~  427 (428)
                      +|+.|++++|+++
T Consensus       588 ~L~~L~Ls~N~l~  600 (636)
T 4eco_A          588 NISVLDIKDNPNI  600 (636)
T ss_dssp             TCCEEECCSCTTC
T ss_pred             cCCEEECcCCCCc
Confidence            9999999999864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=317.43  Aligned_cols=391  Identities=25%  Similarity=0.298  Sum_probs=268.4

Q ss_pred             ceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCC
Q 042919           24 SITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS  103 (428)
Q Consensus        24 ~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  103 (428)
                      .++++.+...       .++.+.+.+|.++++|++|++++|.+.+..+..|.++++|++|+++++.+....+.+|.++++
T Consensus        29 ~l~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           29 STKNLDLSFN-------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             SCCEEECCSC-------CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             cccEEEccCC-------ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            4566666541       244445566777777777777777777666666777777777777777776555567777777


Q ss_pred             CcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc--ccCCCCCCCcCCccEEEcCCCCCccc-hhHhhhCCCc---
Q 042919          104 LEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI--ETEEFPGLPEYQLKALNLRNCSLQAL-PSILLQQLDL---  177 (428)
Q Consensus       104 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L---  177 (428)
                      |++|++++|.+..+.. ..++.+++|++|++++|.+..  .+..+...+  +|++|++++|.+..+ +..+..+++|   
T Consensus       102 L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~~  178 (570)
T 2z63_A          102 LQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--NLEHLDLSSNKIQSIYCTDLRVLHQMPLL  178 (570)
T ss_dssp             CCEEECTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT--TCCEEECTTSCCCEECGGGGHHHHTCTTC
T ss_pred             cccccccccccccCCC-ccccccccccEEecCCCccceecChhhhcccC--CCCEEeCcCCccceecHHHccchhccchh
Confidence            7777777777666532 236677777777777766543  233444443  377777777766544 2334444444   


Q ss_pred             -cEEEccCCcCCCCCch---------------------------------------------------------------
Q 042919          178 -RFIDLSHNKLQGIFPS---------------------------------------------------------------  193 (428)
Q Consensus       178 -~~L~l~~~~~~~~~~~---------------------------------------------------------------  193 (428)
                       +.+++++|.+....+.                                                               
T Consensus       179 ~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~  258 (570)
T 2z63_A          179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  258 (570)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred             hhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence             4555555443321111                                                               


Q ss_pred             -----------------hhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhh------------
Q 042919          194 -----------------WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMG------------  244 (428)
Q Consensus       194 -----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------  244 (428)
                                       ..+..+++|+.|+++++.+.........+ +|+.|++++|.+. .++....            
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNK  336 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCB
T ss_pred             hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCc
Confidence                             11233456666666666555443333333 5555555555443 2222100            


Q ss_pred             -------hcCCCCcEEEccCCCCCCCC--CccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--
Q 042919          245 -------KILPELLSLNLSENGFEGRI--PSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--  313 (428)
Q Consensus       245 -------~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--  313 (428)
                             ..+++|++|++++|.+....  +..+..+++|++|++++|.+. ..+.. +..+++|+.|++++|.+....  
T Consensus       337 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~  414 (570)
T 2z63_A          337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEF  414 (570)
T ss_dssp             SCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred             cccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccch
Confidence                   23567777777777665332  455667788888888888766 33333 667888888888888877653  


Q ss_pred             -ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccc-ccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccc
Q 042919          314 -VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY-GQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLS  390 (428)
Q Consensus       314 -~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~  390 (428)
                       .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..+..+ .++
T Consensus       415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence             3778899999999999988778888899999999999999987 4678889999999999999999998878777 889


Q ss_pred             cCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          391 SLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      +|+.|++++|++++..+..+..+++|+.|++++|+++|
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            99999999999997778889999999999999999886

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.5e-39  Score=316.40  Aligned_cols=386  Identities=21%  Similarity=0.194  Sum_probs=271.1

Q ss_pred             cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCC
Q 042919           23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK  102 (428)
Q Consensus        23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  102 (428)
                      ..++++.+...       .+....+.+|.++++|++|++++|.+++..+..|.++++|++|++++|.+....|..+++++
T Consensus        32 ~~l~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  104 (606)
T 3vq2_A           32 SSTKNIDLSFN-------PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT  104 (606)
T ss_dssp             TTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred             CCcCEEECCCC-------CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence            45667776652       25566677899999999999999999877788899999999999999999877788899999


Q ss_pred             CCcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc--ccCCCCCCCcCCccEEEcCCCCCccch-hHhhhC-----
Q 042919          103 SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI--ETEEFPGLPEYQLKALNLRNCSLQALP-SILLQQ-----  174 (428)
Q Consensus       103 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~-----  174 (428)
                      +|++|++++|.+.+..+ ..++++++|++|++++|.+..  .+..+...+  +|++|++++|.+..++ ..+..+     
T Consensus       105 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3vq2_A          105 SLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT--NLVHVDLSYNYIQTITVNDLQFLRENPQ  181 (606)
T ss_dssp             TCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT--TCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred             cCCEEEccCCccccccc-cccCCCCCCCEEeCCCCcccceechHhHhhcC--CCCEEEccCCcceecChhhhhhhhcccc
Confidence            99999999999887643 468999999999999988753  345555554  4888888888775442 222222     


Q ss_pred             ----------------------CCccEEEccCCcCCC-------------------------------------------
Q 042919          175 ----------------------LDLRFIDLSHNKLQG-------------------------------------------  189 (428)
Q Consensus       175 ----------------------~~L~~L~l~~~~~~~-------------------------------------------  189 (428)
                                            .+|+.|++++|.+..                                           
T Consensus       182 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l  261 (606)
T 3vq2_A          182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV  261 (606)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred             ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence                                  245555555554320                                           


Q ss_pred             ---------------CCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEE
Q 042919          190 ---------------IFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLN  254 (428)
Q Consensus       190 ---------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  254 (428)
                                     ..+.  +..+++|+.|+++++.+.... ....+++|++|++++|.+ +.++. +  .+++|++|+
T Consensus       262 ~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~  334 (606)
T 3vq2_A          262 TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLT  334 (606)
T ss_dssp             EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEE
T ss_pred             cHhheeccccccccccccc--cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C--CCCccceee
Confidence                           0011  245688999999999887655 666788999999999988 36663 2  366666666


Q ss_pred             ccCCCCC----------------------CC--CCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccc
Q 042919          255 LSENGFE----------------------GR--IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ  310 (428)
Q Consensus       255 l~~~~~~----------------------~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (428)
                      +++|...                      ..  .+..+..+++|++|++++|.+. .++ ..+..+++|+.|++++|.+.
T Consensus       335 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~  412 (606)
T 3vq2_A          335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLK  412 (606)
T ss_dssp             EESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEE
T ss_pred             ccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccC
Confidence            6666332                      11  1233344444444444444443 222 22445566666666666655


Q ss_pred             ccc---ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccc-cCCcccCCCCCCcEEeCCCCcCCcCCCCc
Q 042919          311 GEV---VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQLCGSVPSS  386 (428)
Q Consensus       311 ~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  386 (428)
                      ...   .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..++.+++|+.|++++|++++..+..
T Consensus       413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  492 (606)
T 3vq2_A          413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV  492 (606)
T ss_dssp             STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence            442   35566777777777777766666677777778888888877775 35777778888888888888887776666


Q ss_pred             c-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          387 F-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       387 ~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      + .+++|++|++++|++.+..|..++.+++|+.|++++|+|+
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            6 7788888888888887777788888888888888888775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.1e-38  Score=304.91  Aligned_cols=386  Identities=22%  Similarity=0.233  Sum_probs=269.9

Q ss_pred             cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCC
Q 042919           23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK  102 (428)
Q Consensus        23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  102 (428)
                      ..++++.+.. +      .+....+.++.++++|++|++++|.+.+..+..|.++++|++|++++|.+....+..+++++
T Consensus        26 ~~L~~L~Ls~-n------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   98 (549)
T 2z81_A           26 AAMKSLDLSF-N------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS   98 (549)
T ss_dssp             TTCCEEECCS-S------CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred             CCccEEECcC-C------ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence            4577777766 2      24455667888999999999999999877778899999999999999998877777789999


Q ss_pred             CCcEEeCCCCccCCccccccccCCCCCcEEEccCCc-cc-cccCCCCCCCcCCccEEEcCCCCCcc-chhHhhhCCCccE
Q 042919          103 SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSL-VK-IETEEFPGLPEYQLKALNLRNCSLQA-LPSILLQQLDLRF  179 (428)
Q Consensus       103 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~  179 (428)
                      +|++|++++|.+.+...+..++.+++|++|+++++. .. .....+...+  +|++|++++|.+.. .|..+..+++|+.
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~  176 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT--SLNELEIKALSLRNYQSQSLKSIRDIHH  176 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC--EEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred             CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc--ccCeeeccCCcccccChhhhhccccCce
Confidence            999999999988865445678889999999998876 32 2233455544  48888888877744 4555665556666


Q ss_pred             EEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc----cCC------------------------------------
Q 042919          180 IDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF----QLP------------------------------------  219 (428)
Q Consensus       180 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~------------------------------------  219 (428)
                      |+++++... ..+..++..+++|+.|++++|.+.+..    ...                                    
T Consensus       177 L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~  255 (549)
T 2z81_A          177 LTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE  255 (549)
T ss_dssp             EEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred             EecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence            666555543 233333344555555555555443310    000                                    


Q ss_pred             ----------------------CC-----------------------------CCCccEEecCCCccccCCCchhhhcCC
Q 042919          220 ----------------------SS-----------------------------KHDLLRLDISHNKFSCQLPGNMGKILP  248 (428)
Q Consensus       220 ----------------------~~-----------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~  248 (428)
                                            ..                             .++|+.++++++.+. .++..++..++
T Consensus       256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~  334 (549)
T 2z81_A          256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK  334 (549)
T ss_dssp             EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred             cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence                                  11                             123445555555544 45555544477


Q ss_pred             CCcEEEccCCCCCCCCC---ccccCCCCCCEEECcCcccCCCCch--hhhcCCCCCCEEeCCCcccccccc-cCCCCCcc
Q 042919          249 ELLSLNLSENGFEGRIP---SSMSEMKRLESLDLSSNNFSGELPR--QFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLC  322 (428)
Q Consensus       249 ~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~  322 (428)
                      +|++|++++|.+.+..+   ..+..+++|++|++++|.+. .++.  ..+..+++|+.|++++|.+..... +..+++|+
T Consensus       335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~  413 (549)
T 2z81_A          335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR  413 (549)
T ss_dssp             TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCC
T ss_pred             cccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCccCChhhccccccc
Confidence            77778877777764332   23566777888888877775 3332  346677788888888887765433 56677888


Q ss_pred             eeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcC
Q 042919          323 WLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAF  402 (428)
Q Consensus       323 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~  402 (428)
                      +|++++|.++..... +  .++|+.|++++|++++.    ...+++|++|++++|+++. .+....+++|+.|++++|++
T Consensus       414 ~L~Ls~N~l~~l~~~-~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~-ip~~~~l~~L~~L~Ls~N~l  485 (549)
T 2z81_A          414 FLNLSSTGIRVVKTC-I--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKT-LPDASLFPVLLVMKISRNQL  485 (549)
T ss_dssp             EEECTTSCCSCCCTT-S--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSS-CCCGGGCTTCCEEECCSSCC
T ss_pred             EEECCCCCcccccch-h--cCCceEEECCCCChhhh----cccCChhcEEECCCCccCc-CCCcccCccCCEEecCCCcc
Confidence            888888877643222 1  35788888888887743    2578999999999999984 44444789999999999999


Q ss_pred             CccCCcccccCCCCCEEECCCCccCC
Q 042919          403 NGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       403 ~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      ++..|..++.+++|+.|++++|+++|
T Consensus       486 ~~~~~~~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          486 KSVPDGIFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             CCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred             CCcCHHHHhcCcccCEEEecCCCccC
Confidence            98888889999999999999999876

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.4e-37  Score=308.69  Aligned_cols=171  Identities=26%  Similarity=0.254  Sum_probs=103.4

Q ss_pred             CCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc------------------------
Q 042919          258 NGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV------------------------  313 (428)
Q Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------------  313 (428)
                      |.+.+..+..+..+++|++|++++|.+.+.++...+.++++|+.|++++|.+....                        
T Consensus       391 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  470 (680)
T 1ziw_A          391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD  470 (680)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred             CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence            33333334455566666666666666554444444555666666666665543211                        


Q ss_pred             ----ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccC--------CcccCCCCCCcEEeCCCCcCCc
Q 042919          314 ----VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI--------PPWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       314 ----~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~--------~~~~~~~~~L~~L~L~~~~~~~  381 (428)
                          .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++...        +..+.++++|+.|++++|+++.
T Consensus       471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  550 (680)
T 1ziw_A          471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE  550 (680)
T ss_dssp             CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence                1445556666666666666555555666666666666666665321        1125666677777777777665


Q ss_pred             CCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          382 SVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       382 ~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      ..+..+ .+++|+.|++++|+++...+..|..+++|+.|++++|+++|
T Consensus       551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred             CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence            554445 67777777777777775555666777777777777777764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1e-37  Score=312.40  Aligned_cols=346  Identities=21%  Similarity=0.251  Sum_probs=286.5

Q ss_pred             chHhhhcCCCCCEEEccCCccCc-----------------chhhhhc--cCCCCcEEeCCCCccCCccccccccCCCCCc
Q 042919           70 LSPCLSNLTHIKVLDLSSNQLTG-----------------NLQSVIA--NIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQ  130 (428)
Q Consensus        70 ~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  130 (428)
                      +|..+.++++|+.|++++|.+.+                 ..|..+.  ++++|++|++++|.+.+..+ ..+.++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCC
Confidence            67789999999999999999986                 2777776  99999999999998877655 7899999999


Q ss_pred             EEEccCCc-ccc--ccCCCC-----CCCcCCccEEEcCCCCCccchh--HhhhCCCccEEEccCCcCCCCCchhhhhcCC
Q 042919          131 VFKLSNSL-VKI--ETEEFP-----GLPEYQLKALNLRNCSLQALPS--ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNT  200 (428)
Q Consensus       131 ~L~l~~~~-~~~--~~~~~~-----~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  200 (428)
                      +|++++|. +..  .+..+.     ....++|+.|++++|.+..+|.  .+..+++|+.|++++|.+. .++  .+..++
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~  595 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNV  595 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTS
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCC
Confidence            99999987 542  222111     1122359999999999999998  8999999999999999988 666  357899


Q ss_pred             CCCEEEecCCccCCcccCCCCCCC-ccEEecCCCccccCCCchhhhcC--CCCcEEEccCCCCCCCCCc---ccc--CCC
Q 042919          201 KLDTLYLLNNSLSGNFQLPSSKHD-LLRLDISHNKFSCQLPGNMGKIL--PELLSLNLSENGFEGRIPS---SMS--EMK  272 (428)
Q Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~---~l~--~~~  272 (428)
                      +|+.|++++|.+...+.....+++ |+.|++++|.+. .++..+.. .  ++|+.|++++|.+.+..+.   .+.  .++
T Consensus       596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~-~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA-KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT-TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             cceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhc-cccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            999999999999876666778888 999999999998 77765543 3  3499999999998765442   222  345


Q ss_pred             CCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC-------CCCCcceeecccCccCccchhhhh--c
Q 042919          273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP-------NSTNLCWLYLNNNHFSGKIQDGLS--K  341 (428)
Q Consensus       273 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~-------~~~~L~~L~l~~~~~~~~~~~~l~--~  341 (428)
                      +|++|++++|.+. .++...+..+++|+.|++++|.+.....  +.       ++++|++|++++|.++ ..+..+.  .
T Consensus       674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~  751 (876)
T 4ecn_A          674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT  751 (876)
T ss_dssp             CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred             CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence            8999999999998 7888888889999999999999885433  22       2349999999999998 4556665  8


Q ss_pred             CCCCcEEEccCCcccccCCcccCCCCCCcEEeCCC------CcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCC
Q 042919          342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISE------NQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSL  414 (428)
Q Consensus       342 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~------~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~  414 (428)
                      +++|+.|++++|.+++ +|..+.++++|+.|+|++      |.+.+..+..+ .+++|+.|++++|++ +.+|..+.  +
T Consensus       752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~  827 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--P  827 (876)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--S
T ss_pred             CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--C
Confidence            9999999999999995 788899999999999976      77787888777 899999999999999 48887765  6


Q ss_pred             CCCEEECCCCccC
Q 042919          415 SLTVLDLRDNEFS  427 (428)
Q Consensus       415 ~L~~L~l~~~~~~  427 (428)
                      +|+.|++++|++.
T Consensus       828 ~L~~LdLs~N~l~  840 (876)
T 4ecn_A          828 QLYILDIADNPNI  840 (876)
T ss_dssp             SSCEEECCSCTTC
T ss_pred             CCCEEECCCCCCC
Confidence            9999999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.7e-36  Score=301.05  Aligned_cols=392  Identities=25%  Similarity=0.277  Sum_probs=237.8

Q ss_pred             cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCC
Q 042919           23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK  102 (428)
Q Consensus        23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  102 (428)
                      ..++++.+.. +      .+..+.+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+....+.+|++++
T Consensus        25 ~~l~~L~Ls~-n------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~   97 (680)
T 1ziw_A           25 TNITVLNLTH-N------QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT   97 (680)
T ss_dssp             TTCSEEECCS-S------CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCcEEECCC-C------CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence            4577777766 2      13344456788999999999999999888888899999999999999988865555788999


Q ss_pred             CCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccc-cCCCCCCCcCCccEEEcCCCCCccchhH-h--hhCCCcc
Q 042919          103 SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIE-TEEFPGLPEYQLKALNLRNCSLQALPSI-L--LQQLDLR  178 (428)
Q Consensus       103 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~--~~~~~L~  178 (428)
                      +|++|++++|.+.++ ++..++++++|++|++++|.+... +..+...+  +|++|++++|.+..++.. +  ..+++|+
T Consensus        98 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  174 (680)
T 1ziw_A           98 NLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE--NLQELLLSNNKIQALKSEELDIFANSSLK  174 (680)
T ss_dssp             TCSEEECCSSCCCCC-CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT--TCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred             CCCEEECCCCccCcc-ChhHccccCCCCEEECCCCcccccCchhhcccc--cCCEEEccCCcccccCHHHhhcccccccc
Confidence            999999999988766 335688899999999998876443 33444444  499999999888766543 2  2446888


Q ss_pred             EEEccCCcCCCCCchhhhhcC---------------------------CCCCEEEecCCccCCccc-CCCCC--CCccEE
Q 042919          179 FIDLSHNKLQGIFPSWLLQNN---------------------------TKLDTLYLLNNSLSGNFQ-LPSSK--HDLLRL  228 (428)
Q Consensus       179 ~L~l~~~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~-~~~~~--~~L~~L  228 (428)
                      .|++++|.+....+..+ ..+                           ++|+.|+++++.+.+... ....+  ++|++|
T Consensus       175 ~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L  253 (680)
T 1ziw_A          175 KLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML  253 (680)
T ss_dssp             EEECTTCCCCCBCTTGG-GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred             EEECCCCcccccChhhh-hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence            88888887775544332 122                           445555555555443211 11222  236666


Q ss_pred             ecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCcc---------------------------------ccCCCCCC
Q 042919          229 DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS---------------------------------MSEMKRLE  275 (428)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------------------------l~~~~~L~  275 (428)
                      ++++|.+.+..+..+.. +++|++|++++|.+.+..+..                                 +..+++|+
T Consensus       254 ~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~  332 (680)
T 1ziw_A          254 DLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE  332 (680)
T ss_dssp             ECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred             ECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence            66666555333333332 556666666655554333333                                 44455566


Q ss_pred             EEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc----ccC--CCCCcceeecccCccCccchhhhhcCCCCcEEE
Q 042919          276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV----VFP--NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELD  349 (428)
Q Consensus       276 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  349 (428)
                      +|++++|.+. .++...+..+++|+.|++++|.+....    .+.  ..++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus       333 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  411 (680)
T 1ziw_A          333 HLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD  411 (680)
T ss_dssp             EEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             EEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence            6666666555 233334455566666666554321100    000  012333333333444333344444445555555


Q ss_pred             ccCCccc-------------------------ccCCcccCCCCCCcEEeCCCCcCC--cCCCCcc-ccccCceEEccCCc
Q 042919          350 LSNNMLY-------------------------GQIPPWFGNLSGLQFLDISENQLC--GSVPSSF-NLSSLRRLYMHMNA  401 (428)
Q Consensus       350 l~~~~i~-------------------------~~~~~~~~~~~~L~~L~L~~~~~~--~~~~~~~-~~~~L~~L~l~~~~  401 (428)
                      +++|.++                         +..+..+..+++|+.|++++|.+.  +..+..+ .+++|+.|++++|.
T Consensus       412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~  491 (680)
T 1ziw_A          412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN  491 (680)
T ss_dssp             CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred             CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence            5555444                         333344444445555555554443  2334444 66778888888888


Q ss_pred             CCccCCcccccCCCCCEEECCCCccC
Q 042919          402 FNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       402 ~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      ++...+..|..+++|+.|++++|+++
T Consensus       492 l~~i~~~~~~~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          492 IANINDDMLEGLEKLEILDLQHNNLA  517 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred             CCcCChhhhccccccCEEeCCCCCcc
Confidence            77666677778888888888888765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-37  Score=300.52  Aligned_cols=368  Identities=23%  Similarity=0.218  Sum_probs=281.4

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK  133 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  133 (428)
                      +++++|+++++.+++..+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+.+. ++..+.++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCcccccccc
Confidence            5799999999999987788899999999999999999877778899999999999999998776 336789999999999


Q ss_pred             ccCCccccccC-CCCCCCcCCccEEEcCCCCCcc--chhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCC----CEEE
Q 042919          134 LSNSLVKIETE-EFPGLPEYQLKALNLRNCSLQA--LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKL----DTLY  206 (428)
Q Consensus       134 l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~  206 (428)
                      ++++.+...+. .+..++  +|++|++++|.+..  +|..+..+++|++|++++|.+....+..+ ..+++|    +.++
T Consensus       107 L~~n~l~~l~~~~~~~l~--~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L~  183 (570)
T 2z63_A          107 AVETNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLD  183 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCT--TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEEE
T ss_pred             ccccccccCCCccccccc--cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-cchhccchhhhhcc
Confidence            99998755433 455444  59999999999865  68999999999999999999886554443 455555    6777


Q ss_pred             ecCCccCCcccC--------------------------------------------------------------------
Q 042919          207 LLNNSLSGNFQL--------------------------------------------------------------------  218 (428)
Q Consensus       207 l~~~~~~~~~~~--------------------------------------------------------------------  218 (428)
                      +++|.+......                                                                    
T Consensus       184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            776655432111                                                                    


Q ss_pred             --------------CCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCcc-----------------
Q 042919          219 --------------PSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS-----------------  267 (428)
Q Consensus       219 --------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------  267 (428)
                                    ...+++|+.|+++++.+. .++..+.. + +|++|++++|.+.......                 
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc-C-CccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence                          123456666666666665 44444433 3 5666666665554211110                 


Q ss_pred             --ccCCCCCCEEECcCcccCCCCc-hhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccch-hhhhcC
Q 042919          268 --MSEMKRLESLDLSSNNFSGELP-RQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQ-DGLSKA  342 (428)
Q Consensus       268 --l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~l~~~  342 (428)
                        ...+++|++|++++|.+.+... ...+..+++|+.|++++|.+..... +..+++|++|++++|.+.+..+ ..+.++
T Consensus       341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  420 (570)
T 2z63_A          341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  420 (570)
T ss_dssp             CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred             cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence              0355667777777776652210 2335677888888888887765443 7788899999999888876544 467889


Q ss_pred             CCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC-cCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEE
Q 042919          343 TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC-GSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLD  420 (428)
Q Consensus       343 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  420 (428)
                      ++|+.|++++|.+++..+..+.++++|+.|++++|.++ +..+..+ .+++|+.|++++|++++..|..+..+++|+.|+
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence            99999999999998788888999999999999999987 4566666 889999999999999988899999999999999


Q ss_pred             CCCCccCC
Q 042919          421 LRDNEFSG  428 (428)
Q Consensus       421 l~~~~~~~  428 (428)
                      +++|+++|
T Consensus       501 l~~n~l~~  508 (570)
T 2z63_A          501 MASNQLKS  508 (570)
T ss_dssp             CCSSCCSC
T ss_pred             CCCCcCCC
Confidence            99999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.8e-37  Score=302.52  Aligned_cols=364  Identities=22%  Similarity=0.296  Sum_probs=297.7

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCc--------------------------------------------
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ--------------------------------------------   89 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------------------------------------   89 (428)
                      .+++.|+++++.+.+.+|..+.++++|++|++++|.                                            
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            467777777777777777777777778888777663                                            


Q ss_pred             ----------------------------------cCcchhhhhccCCCCcEEeCCCCccCCc----------------cc
Q 042919           90 ----------------------------------LTGNLQSVIANIKSLEYLSLDDNNFEGL----------------FS  119 (428)
Q Consensus        90 ----------------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------~~  119 (428)
                                                        +++ +|..++++++|++|++++|.+.+.                ..
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                                              333 677899999999999999998872                02


Q ss_pred             ccccc--CCCCCcEEEccCCcc-ccccCCCCCCCcCCccEEEcCCCC-Cc--cchhHhhhC------CCccEEEccCCcC
Q 042919          120 FNSLK--NHSKLQVFKLSNSLV-KIETEEFPGLPEYQLKALNLRNCS-LQ--ALPSILLQQ------LDLRFIDLSHNKL  187 (428)
Q Consensus       120 ~~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~--~l~~~~~~~------~~L~~L~l~~~~~  187 (428)
                      +..++  ++++|++|++++|.. ...+..+..++  +|++|++++|. +.  .+|..+..+      ++|++|++++|.+
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP--EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS--SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCC--CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            46777  999999999999875 34455565555  49999999998 76  589988886      8999999999999


Q ss_pred             CCCCch-hhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCC-CcEEEccCCCCCCCCC
Q 042919          188 QGIFPS-WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPE-LLSLNLSENGFEGRIP  265 (428)
Q Consensus       188 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~  265 (428)
                      . .++. ..+..+++|+.|++++|.+.+.......+++|++|++++|.+. .++..+.. +++ |++|++++|.+. ..|
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp  393 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIP  393 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCC
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccc
Confidence            8 6665 2347899999999999999843336678899999999999998 77777666 778 999999999998 677


Q ss_pred             ccccCCC--CCCEEECcCcccCCCCchhhhc-------CCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCcc
Q 042919          266 SSMSEMK--RLESLDLSSNNFSGELPRQFLS-------GCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGK  334 (428)
Q Consensus       266 ~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~  334 (428)
                      ..+...+  +|++|++++|.+.+..+.. +.       .+++|+.|++++|.+.....  +..+++|++|++++|.++..
T Consensus       394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i  472 (636)
T 4eco_A          394 NIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI  472 (636)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred             hhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence            7777654  8999999999988655543 33       56799999999999986554  56789999999999999854


Q ss_pred             chhhhhcCC-------CCcEEEccCCcccccCCcccC--CCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEc------c
Q 042919          335 IQDGLSKAT-------SLLELDLSNNMLYGQIPPWFG--NLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYM------H  398 (428)
Q Consensus       335 ~~~~l~~~~-------~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l------~  398 (428)
                      ....+....       +|+.|++++|.++ .+|..+.  .+++|+.|+|++|++++ .+..+ .+++|+.|++      +
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls  550 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ  550 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred             CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence            444444333       8999999999999 7888886  99999999999999997 55555 8999999999      5


Q ss_pred             CCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          399 MNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       399 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      +|++.+..|..++.+++|+.|++++|+++
T Consensus       551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  579 (636)
T 4eco_A          551 GNRTLREWPEGITLCPSLTQLQIGSNDIR  579 (636)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred             cCcccccChHHHhcCCCCCEEECCCCcCC
Confidence            67788889999999999999999999984

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=315.60  Aligned_cols=109  Identities=23%  Similarity=0.191  Sum_probs=55.8

Q ss_pred             CCCCEEEecCCccCCc-ccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEE
Q 042919          200 TKLDTLYLLNNSLSGN-FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLD  278 (428)
Q Consensus       200 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  278 (428)
                      ++|+.|++++|.+... ......+++|+.|++++|.+.+..+..+.. +++|++|++++|.+....+..+..+++|++|+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            3455555555544432 122334555556666555555333333322 55566666666655544455555566666666


Q ss_pred             CcCcccCCCCchhhhcCCCCCCEEeCCCcccc
Q 042919          279 LSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ  310 (428)
Q Consensus       279 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (428)
                      +++|.+. .++...+..+++|+.|++++|.+.
T Consensus       345 L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          345 LQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             CCSCCCC-CCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCCCCCC-ccChhhhcCCCCCCEEECCCCCCC
Confidence            6665554 333333445555555555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.8e-36  Score=283.72  Aligned_cols=357  Identities=24%  Similarity=0.268  Sum_probs=229.4

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCc-chhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-NLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVF  132 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  132 (428)
                      ++|++|++++|.+.+..+..|.++++|++|+++++.+.. ..+..|..+++|++|++++|.+.+. .+..++++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEE
Confidence            679999999999887778888899999999999988763 3356788899999999999988765 33577888889999


Q ss_pred             EccCCcccc---ccCCCCCCCcCCccEEEcCCCCCccc-hhH-hhhCCCccEEEccCCcCCCCCchhhhh-cCCCCCEEE
Q 042919          133 KLSNSLVKI---ETEEFPGLPEYQLKALNLRNCSLQAL-PSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQ-NNTKLDTLY  206 (428)
Q Consensus       133 ~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~  206 (428)
                      ++++|.+..   ....+...+  +|++|++++|.+..+ |.. +..+++|+.|++++|.+....+..+.. ...+++.++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~  186 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLT--SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR  186 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCT--TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred             eCCCCCCCccccCcccccCcc--cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence            888887753   222244444  488888888888665 433 677888888888888877655544321 125677888


Q ss_pred             ecCCccCCcccC---------CCCCCCccEEecCCCccccCCCchhhhc--CCCCcEEEccCCCCCCCCCccccCCCCCC
Q 042919          207 LLNNSLSGNFQL---------PSSKHDLLRLDISHNKFSCQLPGNMGKI--LPELLSLNLSENGFEGRIPSSMSEMKRLE  275 (428)
Q Consensus       207 l~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  275 (428)
                      ++++.+......         ...+++|++|++++|.+.+..+..+...  .++++.|++++|....... ....++.  
T Consensus       187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~--  263 (455)
T 3v47_A          187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-GHTNFKD--  263 (455)
T ss_dssp             CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-TCCSSCC--
T ss_pred             cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-chhhhcc--
Confidence            888776653322         2244677777887777765555544432  2567777777765432110 0000000  


Q ss_pred             EEECcCcccCCCCchhhhc--CCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEcc
Q 042919          276 SLDLSSNNFSGELPRQFLS--GCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS  351 (428)
Q Consensus       276 ~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  351 (428)
                                  .....+.  ..++|+.|++++|.+.....  +..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       264 ------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  331 (455)
T 3v47_A          264 ------------PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS  331 (455)
T ss_dssp             ------------CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ------------CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence                        0000011  23456666666666554332  5556666666666666665555566666666666666


Q ss_pred             CCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          352 NNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       352 ~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      +|.+++..+..+.++++|+.|++++|++++..+..+ .+++|++|++++|+++...+..+..+++|+.|++++|+++|
T Consensus       332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            666665555666666666666666666665555555 56666666666666665444555666666666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.5e-35  Score=278.74  Aligned_cols=345  Identities=24%  Similarity=0.319  Sum_probs=177.0

Q ss_pred             CCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEE
Q 042919           53 LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVF  132 (428)
Q Consensus        53 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  132 (428)
                      ++++++|++.++.+... + .+..+++|++|++++|.+....+  +..+++|++|++++|.+.+..+   +..+++|++|
T Consensus        45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEE
T ss_pred             hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEE
Confidence            44555555555555422 2 24455555555555555543222  4555555555555555544421   5555555555


Q ss_pred             EccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCcc
Q 042919          133 KLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL  212 (428)
Q Consensus       133 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  212 (428)
                      ++++|.+...+. +...+  +|++|++++|.+..++. +..+++|+.|++++ .+....+   +..+++|+.|++++|.+
T Consensus       118 ~L~~n~l~~~~~-~~~l~--~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~~~~~---~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          118 TLFNNQITDIDP-LKNLT--NLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVTDLKP---LANLTTLERLDISSNKV  189 (466)
T ss_dssp             ECCSSCCCCCGG-GTTCT--TCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCCCCGG---GTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCChH-HcCCC--CCCEEECCCCccCCChh-hccCCcccEeecCC-cccCchh---hccCCCCCEEECcCCcC
Confidence            555554433222 22222  35555555555544442 45555555555542 2221111   34555555555555555


Q ss_pred             CCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhh
Q 042919          213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF  292 (428)
Q Consensus       213 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  292 (428)
                      .... ....+++|++|++++|.+.+..+  +. .+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+ .+.  
T Consensus       190 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~--  260 (466)
T 1o6v_A          190 SDIS-VLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP--  260 (466)
T ss_dssp             CCCG-GGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--
T ss_pred             CCCh-hhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc-chh--
Confidence            4332 23445556666666555543222  22 255566666666655432  245555666666666665542 222  


Q ss_pred             hcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEE
Q 042919          293 LSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFL  372 (428)
Q Consensus       293 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  372 (428)
                      +..+++|+.|++++|.+.....+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence            44556666666666655555445556666666666665554322  4555666666666666553332  4555666666


Q ss_pred             eCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          373 DISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       373 ~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      ++++|++++. +....+++|+.|++++|++.+..|  +..+++|+.|++++|+++|
T Consensus       337 ~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            6666655543 211155666666666666654444  5556666666666665543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=285.45  Aligned_cols=220  Identities=21%  Similarity=0.209  Sum_probs=163.1

Q ss_pred             CCCEEEecCCccCC-cccCC-----CCCCCccEEecCCCccccCCC-chhhhc--CCCCcEEEccCCCCCCCCCccccCC
Q 042919          201 KLDTLYLLNNSLSG-NFQLP-----SSKHDLLRLDISHNKFSCQLP-GNMGKI--LPELLSLNLSENGFEGRIPSSMSEM  271 (428)
Q Consensus       201 ~L~~L~l~~~~~~~-~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~  271 (428)
                      +|+.|++++|.+.+ .+...     ..+++|+.++++.+.+  .++ ..+...  .++|+.|++++|.+....  ....+
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l  323 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKI  323 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred             cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhC
Confidence            45555555554442 22222     4455566666665555  333 222221  156888888888775322  12688


Q ss_pred             CCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc----ccCCCCCcceeecccCccCc-cchhhhhcCCCCc
Q 042919          272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSG-KIQDGLSKATSLL  346 (428)
Q Consensus       272 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~  346 (428)
                      ++|++|++++|.+.+..+. .+..+++|+.|++++|.+....    .+..+++|++|++++|.+.+ .....+..+++|+
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            9999999999999854554 4678999999999999998632    27899999999999999987 4444578889999


Q ss_pred             EEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCc-ccccCCCCCEEECCCCc
Q 042919          347 ELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPG-ALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       347 ~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~  425 (428)
                      +|++++|.+++..+..+.  ++|+.|++++|+++........+++|+.|++++|+++ .+|. .+..+++|+.|++++|+
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence            999999999877666654  7999999999999944443448999999999999999 4555 48999999999999999


Q ss_pred             cCC
Q 042919          426 FSG  428 (428)
Q Consensus       426 ~~~  428 (428)
                      ++|
T Consensus       480 ~~c  482 (520)
T 2z7x_B          480 WDC  482 (520)
T ss_dssp             BCC
T ss_pred             Ccc
Confidence            975

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.3e-36  Score=302.62  Aligned_cols=360  Identities=17%  Similarity=0.151  Sum_probs=292.7

Q ss_pred             eeeeecccccCCCCCcEEeccCCcCCCC-----------------chHhhh--cCCCCCEEEccCCccCcchhhhhccCC
Q 042919           42 LTVFVNTGICELKNLVELDLSKNNLYGH-----------------LSPCLS--NLTHIKVLDLSSNQLTGNLQSVIANIK  102 (428)
Q Consensus        42 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~  102 (428)
                      +.. +|..++++++|++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+..|..+.+++
T Consensus       437 L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~  515 (876)
T 4ecn_A          437 ITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP  515 (876)
T ss_dssp             EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred             ccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence            444 678899999999999999999972                 777766  999999999999998888899999999


Q ss_pred             CCcEEeCCCCc-cCC-cccccc-------ccCCCCCcEEEccCCccccccC--CCCCCCcCCccEEEcCCCCCccchhHh
Q 042919          103 SLEYLSLDDNN-FEG-LFSFNS-------LKNHSKLQVFKLSNSLVKIETE--EFPGLPEYQLKALNLRNCSLQALPSIL  171 (428)
Q Consensus       103 ~L~~L~l~~~~-~~~-~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~l~~~~  171 (428)
                      +|++|++++|+ +.+ .. +..       +..+++|++|++++|.+...+.  .+..++  +|+.|++++|.+..+| .+
T Consensus       516 ~L~~L~Ls~N~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~--~L~~L~Ls~N~l~~lp-~~  591 (876)
T 4ecn_A          516 ELQSLNIACNRGISAAQL-KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV--KLGLLDCVHNKVRHLE-AF  591 (876)
T ss_dssp             SCCEEECTTCTTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCT--TCCEEECTTSCCCBCC-CC
T ss_pred             CCCEEECcCCCCcccccc-hHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCC--CCCEEECCCCCcccch-hh
Confidence            99999999998 665 22 233       3455699999999998875555  566655  4999999999999999 88


Q ss_pred             hhCCCccEEEccCCcCCCCCchhhhhcCCC-CCEEEecCCccCCcccCCCCC--CCccEEecCCCccccCCCchh---hh
Q 042919          172 LQQLDLRFIDLSHNKLQGIFPSWLLQNNTK-LDTLYLLNNSLSGNFQLPSSK--HDLLRLDISHNKFSCQLPGNM---GK  245 (428)
Q Consensus       172 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~---~~  245 (428)
                      ..+++|+.|++++|.+. .++..+ ..+++ |+.|++++|.+...+......  ++|+.|++++|.+.+.++...   ..
T Consensus       592 ~~L~~L~~L~Ls~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             CTTSEESEEECCSSCCS-CCCTTS-CEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             cCCCcceEEECcCCccc-cchHHH-hhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            89999999999999998 666554 57788 999999999988655444444  459999999999976544211   11


Q ss_pred             -cCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCC-------CCCCEEeCCCcccccccc-cC
Q 042919          246 -ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGC-------FSLSFLSLSDNHLQGEVV-FP  316 (428)
Q Consensus       246 -~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~-~~  316 (428)
                       ..++|+.|++++|.+.......+..+++|++|++++|.+. .++...+...       ++|+.|++++|.+..... +.
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~  748 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR  748 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence             1458999999999998544444558999999999999988 7776655433       399999999999985544 44


Q ss_pred             --CCCCcceeecccCccCccchhhhhcCCCCcEEEccC------CcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccc
Q 042919          317 --NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN------NMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN  388 (428)
Q Consensus       317 --~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~------~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~  388 (428)
                        .+++|+.|++++|.+.+ .+..+..+++|+.|++++      |.+.+.+|..+.++++|+.|+|++|++. ..|..+ 
T Consensus       749 ~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l-  825 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL-  825 (876)
T ss_dssp             TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCC-
T ss_pred             hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhh-
Confidence              89999999999999987 577788999999999976      6777789999999999999999999994 555554 


Q ss_pred             cccCceEEccCCcCCccCCccccc
Q 042919          389 LSSLRRLYMHMNAFNGSIPGALRR  412 (428)
Q Consensus       389 ~~~L~~L~l~~~~~~~~~~~~~~~  412 (428)
                      .++|+.|++++|++....+..+..
T Consensus       826 ~~~L~~LdLs~N~l~~i~~~~~~~  849 (876)
T 4ecn_A          826 TPQLYILDIADNPNISIDVTSVCP  849 (876)
T ss_dssp             CSSSCEEECCSCTTCEEECGGGHH
T ss_pred             cCCCCEEECCCCCCCccChHHccc
Confidence            379999999999998666655543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-36  Score=304.08  Aligned_cols=393  Identities=21%  Similarity=0.180  Sum_probs=252.0

Q ss_pred             cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCc-hHhhhcCCCCCEEEccCCccCcchhhhhccC
Q 042919           23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHL-SPCLSNLTHIKVLDLSSNQLTGNLQSVIANI  101 (428)
Q Consensus        23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  101 (428)
                      ..++++.+...       .++...+.+|.++++|++|++++|.....+ +..|.++++|++|++++|.+....|..|.++
T Consensus        24 ~~l~~LdLs~N-------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l   96 (844)
T 3j0a_A           24 NTTERLLLSFN-------YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL   96 (844)
T ss_dssp             TTCCEEEEESC-------CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred             CCcCEEECCCC-------cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence            34666666551       244555677788888888888887544333 6677888888888888888776667778888


Q ss_pred             CCCcEEeCCCCccCCccc-cccccCCCCCcEEEccCCcccccc--CCCCCCCcCCccEEEcCCCCCcc-chhHhhhC--C
Q 042919          102 KSLEYLSLDDNNFEGLFS-FNSLKNHSKLQVFKLSNSLVKIET--EEFPGLPEYQLKALNLRNCSLQA-LPSILLQQ--L  175 (428)
Q Consensus       102 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~--~  175 (428)
                      ++|++|++++|.+.+..+ ...+..+++|++|++++|.+....  ..+..++  +|++|++++|.+.. .+..+..+  +
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~--~L~~L~Ls~N~i~~~~~~~l~~l~~~  174 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN--SLKSIDFSSNQIFLVCEHELEPLQGK  174 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS--SCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC--CCCEEECCCCcCCeeCHHHcccccCC
Confidence            888888888887765322 224777888888888877764432  2344444  48888888877744 34445544  6


Q ss_pred             CccEEEccCCcCCCCCchhhhhcCC------CCCEEEecCCccCCccc--------------------------------
Q 042919          176 DLRFIDLSHNKLQGIFPSWLLQNNT------KLDTLYLLNNSLSGNFQ--------------------------------  217 (428)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~--------------------------------  217 (428)
                      +|+.|++++|.+....+..+ ..+.      .|+.|++++|.+.....                                
T Consensus       175 ~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~  253 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK  253 (844)
T ss_dssp             SSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred             ccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence            77777777777665444332 1222      37788887775432100                                


Q ss_pred             -----CCC--CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919          218 -----LPS--SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR  290 (428)
Q Consensus       218 -----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  290 (428)
                           ...  ..++++.|++++|.+....+..+.. +++|+.|++++|.+....+..+..+++|++|++++|.+. .+..
T Consensus       254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~  331 (844)
T 3j0a_A          254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYS  331 (844)
T ss_dssp             TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCS
T ss_pred             CCChhhhhccccCCccEEECCCCcccccChhhhhc-CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCH
Confidence                 000  1367888999888887544444443 889999999999888777788888999999999999887 4444


Q ss_pred             hhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccc---------------------------------
Q 042919          291 QFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKI---------------------------------  335 (428)
Q Consensus       291 ~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~---------------------------------  335 (428)
                      ..+..+++|+.|++++|.+.....  +..+++|++|++++|.++...                                 
T Consensus       332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N  411 (844)
T 3j0a_A          332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN  411 (844)
T ss_dssp             CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSC
T ss_pred             HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccC
Confidence            457788999999999998876543  677888888888887765321                                 


Q ss_pred             -------hhhhhcCCCCcEEEccCCcccccCCc-ccCCCCCCcEEeCCCCcCCcC-----CCCcc-ccccCceEEccCCc
Q 042919          336 -------QDGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGS-----VPSSF-NLSSLRRLYMHMNA  401 (428)
Q Consensus       336 -------~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~L~~~~~~~~-----~~~~~-~~~~L~~L~l~~~~  401 (428)
                             ...+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.++..     .+..+ .+++|+.|++++|.
T Consensus       412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  491 (844)
T 3j0a_A          412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY  491 (844)
T ss_dssp             CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred             ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence                   11123556666666666666532211 223344444444444444311     11222 44556666666666


Q ss_pred             CCccCCcccccCCCCCEEECCCCccC
Q 042919          402 FNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       402 ~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      +++..|..|..+++|+.|++++|.|+
T Consensus       492 l~~~~~~~~~~l~~L~~L~Ls~N~l~  517 (844)
T 3j0a_A          492 LNSLPPGVFSHLTALRGLSLNSNRLT  517 (844)
T ss_dssp             HTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred             ccccChhHccchhhhheeECCCCCCC
Confidence            65555555566666666666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.2e-36  Score=291.80  Aligned_cols=367  Identities=20%  Similarity=0.240  Sum_probs=270.5

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK  133 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  133 (428)
                      ++|++|++++|.+++..+..|.++++|++|++++|++....+.++..+++|++|++++|.+.+. ++..++++++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEE
Confidence            7899999999999987788899999999999999999977778899999999999999999876 335689999999999


Q ss_pred             ccCCcccc--ccCCCCCCCcCCccEEEcCCCC-Cccch-hHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecC
Q 042919          134 LSNSLVKI--ETEEFPGLPEYQLKALNLRNCS-LQALP-SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN  209 (428)
Q Consensus       134 l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  209 (428)
                      +++|.+..  .+..+...+  +|++|++++|. +..++ ..+..+++|++|++++|.+....+..+ ..+++|+.|+++.
T Consensus       105 Ls~n~l~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~  181 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLT--NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHL  181 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCT--TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEEC
T ss_pred             CCCCcccccchhhhhhccC--CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh-hccccCceEeccc
Confidence            99998864  234455554  59999999998 57776 578889999999999999987666655 5789999999999


Q ss_pred             CccCCcccCC-CCCCCccEEecCCCccccCC--Cchhhhc----------------------------CCCCcEEEccCC
Q 042919          210 NSLSGNFQLP-SSKHDLLRLDISHNKFSCQL--PGNMGKI----------------------------LPELLSLNLSEN  258 (428)
Q Consensus       210 ~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~----------------------------~~~L~~L~l~~~  258 (428)
                      +......... ..+++|+.|++++|.+.+..  +..+...                            +++|+.+++.+|
T Consensus       182 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            8875433222 35789999999999886421  1111111                            234444444444


Q ss_pred             CCCCCC-----------------------------------CccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEe
Q 042919          259 GFEGRI-----------------------------------PSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS  303 (428)
Q Consensus       259 ~~~~~~-----------------------------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  303 (428)
                      .+.+..                                   +......++|+++++++|.+. .++..++..+++|+.|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~  340 (549)
T 2z81_A          262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD  340 (549)
T ss_dssp             EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEE
T ss_pred             cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEE
Confidence            322100                                   000112345677777777765 66766666788888888


Q ss_pred             CCCccccccc-----ccCCCCCcceeecccCccCccch--hhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCC
Q 042919          304 LSDNHLQGEV-----VFPNSTNLCWLYLNNNHFSGKIQ--DGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISE  376 (428)
Q Consensus       304 l~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~  376 (428)
                      +++|.+.+..     .+..+++|++|++++|.+++...  ..+..+++|++|++++|+++ .+|..+..+++|++|++++
T Consensus       341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~  419 (549)
T 2z81_A          341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS  419 (549)
T ss_dssp             CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTT
T ss_pred             ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCC
Confidence            8888877532     25677888888888888875432  45778888888888888887 6677777777777777777


Q ss_pred             CcCCcCCCCc------------------cccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          377 NQLCGSVPSS------------------FNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       377 ~~~~~~~~~~------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      |++++.....                  ..+++|++|++++|+++ .+|. ...+++|+.|++++|+++|
T Consensus       420 N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          420 TGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             SCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred             CCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence            7765322211                  14678888888888887 5565 4578888999998888875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-34  Score=275.11  Aligned_cols=350  Identities=21%  Similarity=0.255  Sum_probs=224.2

Q ss_pred             cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCC-chHhhhcCCCCCEEEccCCccCcchhhhhccC
Q 042919           23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGH-LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI  101 (428)
Q Consensus        23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  101 (428)
                      ..++++.+...       .+....+..++++++|++|++++|.+.+. .+..|.++++|++|++++|.+....+..+.++
T Consensus        30 ~~l~~L~Ls~n-------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  102 (455)
T 3v47_A           30 AHVNYVDLSLN-------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL  102 (455)
T ss_dssp             TTCCEEECCSS-------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred             CccCEEEecCC-------ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence            45778877762       25566678899999999999999988744 46679999999999999999987778899999


Q ss_pred             CCCcEEeCCCCccCCccc-cccccCCCCCcEEEccCCccccccC-C-CCCCCcCCccEEEcCCCCCccc-hhHhhhC--C
Q 042919          102 KSLEYLSLDDNNFEGLFS-FNSLKNHSKLQVFKLSNSLVKIETE-E-FPGLPEYQLKALNLRNCSLQAL-PSILLQQ--L  175 (428)
Q Consensus       102 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~--~  175 (428)
                      ++|++|++++|.+.+..+ ...+..+++|++|++++|.+..... . +...+  +|++|++++|.+..+ +..+..+  .
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~~  180 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR--RFHVLDLTFNKVKSICEEDLLNFQGK  180 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT--TCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC--cccEEeCCCCcccccChhhhhccccc
Confidence            999999999999876322 2348899999999999998865433 2 44444  599999999998655 4455554  5


Q ss_pred             CccEEEccCCcCCCCCchhh-------hhcCCCCCEEEecCCccCCccc----CCCCCCCccEEecCCCccccCCCc---
Q 042919          176 DLRFIDLSHNKLQGIFPSWL-------LQNNTKLDTLYLLNNSLSGNFQ----LPSSKHDLLRLDISHNKFSCQLPG---  241 (428)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~---  241 (428)
                      +|+.|+++++.+....+..+       ...+++|++|++++|.+.+...    ......+++.++++++...+....   
T Consensus       181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  260 (455)
T 3v47_A          181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN  260 (455)
T ss_dssp             EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred             cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence            89999999999876543321       1245789999999998765211    112347899999998865422110   


Q ss_pred             -------hhhh-cCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc
Q 042919          242 -------NMGK-ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV  313 (428)
Q Consensus       242 -------~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  313 (428)
                             .+.. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+. ..+...+..+++|+             
T Consensus       261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~-------------  326 (455)
T 3v47_A          261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL-------------  326 (455)
T ss_dssp             SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC-------------
T ss_pred             hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCC-------------
Confidence                   0000 0234555555555555444445555555555555555544 22222234444444             


Q ss_pred             ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccC
Q 042919          314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSL  392 (428)
Q Consensus       314 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L  392 (428)
                               +|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..+..+ .+++|
T Consensus       327 ---------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          327 ---------KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL  397 (455)
T ss_dssp             ---------EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ---------EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence                     45554444444444444445555555555555544444445555555555555555544443333 44555


Q ss_pred             ceEEccCCcCCc
Q 042919          393 RRLYMHMNAFNG  404 (428)
Q Consensus       393 ~~L~l~~~~~~~  404 (428)
                      +.|++++|++..
T Consensus       398 ~~L~l~~N~l~~  409 (455)
T 3v47_A          398 QKIWLHTNPWDC  409 (455)
T ss_dssp             CEEECCSSCBCC
T ss_pred             cEEEccCCCccc
Confidence            555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.1e-34  Score=276.20  Aligned_cols=361  Identities=22%  Similarity=0.218  Sum_probs=256.6

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK  133 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  133 (428)
                      +++++|++++|.+.+..+..|.++++|++|++++|.++...+.+|..+++|++|++++|.+..+..  .  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--C--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS--C--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc--c--ccccCCEEE
Confidence            678888888888887777788888888888888888876667778888888888888888775522  2  778888888


Q ss_pred             ccCCcccccc--CCCCCCCcCCccEEEcCCCCCccchhHhhhCCCc--cEEEccCCcC--CCCCchhhh-----------
Q 042919          134 LSNSLVKIET--EEFPGLPEYQLKALNLRNCSLQALPSILLQQLDL--RFIDLSHNKL--QGIFPSWLL-----------  196 (428)
Q Consensus       134 l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~-----------  196 (428)
                      +++|.+...+  ..+...+  +|++|++++|.+...  .+..+++|  +.|++++|.+  ....+..+.           
T Consensus       128 Ls~N~l~~l~~p~~~~~l~--~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLT--KLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCT--TCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             CCCCCccccCchHhhcccC--cccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            8887775432  3455544  488888888877542  34445555  8888877766  333322221           


Q ss_pred             --------------hcCCCCCEEEecCCc----------------------------cCCc----ccCCCCCCCccEEec
Q 042919          197 --------------QNNTKLDTLYLLNNS----------------------------LSGN----FQLPSSKHDLLRLDI  230 (428)
Q Consensus       197 --------------~~~~~L~~L~l~~~~----------------------------~~~~----~~~~~~~~~L~~L~l  230 (428)
                                    ..+++|+.++++++.                            +...    ........+|++|++
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l  283 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI  283 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence                          122334444444331                            1000    000001126666677


Q ss_pred             CCCccccCCCchhh----------------------------h--cCCCCcEEEccCCCCCCCCCccccCCCCCCEEECc
Q 042919          231 SHNKFSCQLPGNMG----------------------------K--ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS  280 (428)
Q Consensus       231 ~~~~~~~~~~~~~~----------------------------~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  280 (428)
                      ++|.+.+.++..++                            .  ...++++|++++|.+....  ....+++|++|+++
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~  361 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFT  361 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECC
T ss_pred             eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECC
Confidence            66666554444331                            0  0245888888888775321  12678999999999


Q ss_pred             CcccCCCCchhhhcCCCCCCEEeCCCccccccc----ccCCCCCcceeecccCccCc-cchhhhhcCCCCcEEEccCCcc
Q 042919          281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSG-KIQDGLSKATSLLELDLSNNML  355 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i  355 (428)
                      +|.+.+..+ ..+..+++|+.|++++|.+....    .+..+++|++|++++|.+++ .....+..+++|+.|++++|.+
T Consensus       362 ~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l  440 (562)
T 3a79_B          362 QNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML  440 (562)
T ss_dssp             SSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred             CCccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence            999985444 34678999999999999988643    27899999999999999987 4445678899999999999999


Q ss_pred             cccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcc-cccCCCCCEEECCCCccCC
Q 042919          356 YGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGA-LRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       356 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~  428 (428)
                      ++..+..+.  ++|+.|++++|+++........+++|+.|++++|+++ .+|.. +..+++|+.|++++|+++|
T Consensus       441 ~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          441 TGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             Ccchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence            866665554  7999999999999855554558999999999999999 55554 8999999999999999876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6e-34  Score=275.25  Aligned_cols=361  Identities=21%  Similarity=0.201  Sum_probs=264.2

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK  133 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  133 (428)
                      ++|++|++++|.+.+..+..|.++++|++|++++|+++...+..+.++++|++|++++|++..+..  .  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC--H--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC--C--CCCCCSEEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc--c--ccCCccEEe
Confidence            899999999999998888899999999999999999997778899999999999999999986522  2  899999999


Q ss_pred             ccCCcccc--ccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCc--cEEEccCCcC--CCCCchhhh-----------
Q 042919          134 LSNSLVKI--ETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDL--RFIDLSHNKL--QGIFPSWLL-----------  196 (428)
Q Consensus       134 l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~-----------  196 (428)
                      +++|.+..  .+..+...+  +|++|++++|.+..  ..+..+++|  +.|++++|.+  ....+..+.           
T Consensus        97 L~~N~l~~~~~p~~~~~l~--~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMS--QLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF  172 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCT--TCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred             ccCCccccccchhhhccCC--cceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence            99998864  235566555  49999999999865  456777778  9999999987  444333321           


Q ss_pred             --------------hcCCCCCEEEecCCc-------cCCcccCCCCCC---------------------------CccEE
Q 042919          197 --------------QNNTKLDTLYLLNNS-------LSGNFQLPSSKH---------------------------DLLRL  228 (428)
Q Consensus       197 --------------~~~~~L~~L~l~~~~-------~~~~~~~~~~~~---------------------------~L~~L  228 (428)
                                    ..+++|+.+++++|.       +.+.......++                           +|++|
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence                          123444444444443       111111112223                           45555


Q ss_pred             ecCCCccccCCCchhh----hcCCCCcEEEccCCCCCCCCCccccCC---CCCCEEECcCcccCCCCchhhhcCCCCCCE
Q 042919          229 DISHNKFSCQLPGNMG----KILPELLSLNLSENGFEGRIPSSMSEM---KRLESLDLSSNNFSGELPRQFLSGCFSLSF  301 (428)
Q Consensus       229 ~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  301 (428)
                      ++++|.+.+.++..++    ..+++|+.++++++.+ ......+..+   ++|++|++++|.+.. .+.  ...+++|++
T Consensus       253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~  328 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLC--PSKISPFLH  328 (520)
T ss_dssp             EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC-CCC--CSSCCCCCE
T ss_pred             EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc-ccc--hhhCCcccE
Confidence            5555554444444331    1244555555555544 1111222222   456677777666542 221  257899999


Q ss_pred             EeCCCcccccc--cccCCCCCcceeecccCccCc--cchhhhhcCCCCcEEEccCCcccccCCc-ccCCCCCCcEEeCCC
Q 042919          302 LSLSDNHLQGE--VVFPNSTNLCWLYLNNNHFSG--KIQDGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISE  376 (428)
Q Consensus       302 L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~L~~  376 (428)
                      |++++|.+.+.  ..+..+++|++|++++|.+++  ..+..+..+++|++|++++|.+++.+|. .+..+++|+.|++++
T Consensus       329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~  408 (520)
T 2z7x_B          329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS  408 (520)
T ss_dssp             EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred             EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence            99999999873  347899999999999999986  3456788999999999999999864555 488899999999999


Q ss_pred             CcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          377 NQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      |++++..+..+. ++|+.|++++|++. .+|..+..+++|+.|++++|+|++
T Consensus       409 N~l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          409 NILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS  458 (520)
T ss_dssp             SCCCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence            999876665543 79999999999999 888888899999999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1e-32  Score=262.41  Aligned_cols=327  Identities=28%  Similarity=0.378  Sum_probs=274.1

Q ss_pred             cccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCC
Q 042919           49 GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSK  128 (428)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  128 (428)
                      .+..+++|++|++++|.+.+..+  +..+++|++|+++++.+....+  +.++++|++|++++|.+.+..   .+..+++
T Consensus        63 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~l~~  135 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID---PLKNLTN  135 (466)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTT
T ss_pred             chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh---HHcCCCC
Confidence            47789999999999999986655  8999999999999999885444  899999999999999988773   3899999


Q ss_pred             CcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEec
Q 042919          129 LQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLL  208 (428)
Q Consensus       129 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  208 (428)
                      |++|++++|.+...+ .+...+  +|+.+++. +.+..++. +..+++|+.|++++|.+....  . +..+++|+.|+++
T Consensus       136 L~~L~l~~n~l~~~~-~~~~l~--~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~  207 (466)
T 1o6v_A          136 LNRLELSSNTISDIS-ALSGLT--SLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDIS--V-LAKLTNLESLIAT  207 (466)
T ss_dssp             CSEEEEEEEEECCCG-GGTTCT--TCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCSEEECC
T ss_pred             CCEEECCCCccCCCh-hhccCC--cccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCCh--h-hccCCCCCEEEec
Confidence            999999998876543 344444  59999996 45555544 788999999999999987542  2 4689999999999


Q ss_pred             CCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCC
Q 042919          209 NNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL  288 (428)
Q Consensus       209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  288 (428)
                      +|.+..... ...+++|+.|++++|.+.+ + ..+. .+++|+.|++++|.+.+..+  +..+++|++|++++|.+. ..
T Consensus       208 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~  280 (466)
T 1o6v_A          208 NNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NI  280 (466)
T ss_dssp             SSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CC
T ss_pred             CCccccccc-ccccCCCCEEECCCCCccc-c-hhhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cc
Confidence            999876544 5578899999999999873 3 2344 38999999999999985543  889999999999999987 34


Q ss_pred             chhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCC
Q 042919          289 PRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSG  368 (428)
Q Consensus       289 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  368 (428)
                      +.  +..+++|+.|++++|.+.+...+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++.  ..++++++
T Consensus       281 ~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~  354 (466)
T 1o6v_A          281 SP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN  354 (466)
T ss_dssp             GG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred             cc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence            43  67899999999999999988888999999999999999986654  77899999999999999854  57899999


Q ss_pred             CcEEeCCCCcCCcCCCCccccccCceEEccCCcCCc
Q 042919          369 LQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNG  404 (428)
Q Consensus       369 L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  404 (428)
                      |+.|++++|++++..+ ...+++|+.|++++|++++
T Consensus       355 L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          355 INWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             CCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            9999999999987776 3388999999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.1e-33  Score=275.58  Aligned_cols=162  Identities=27%  Similarity=0.327  Sum_probs=137.1

Q ss_pred             ccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccC-ccchhhhhcC
Q 042919          266 SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFS-GKIQDGLSKA  342 (428)
Q Consensus       266 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~-~~~~~~l~~~  342 (428)
                      ..+..+++|+.+++..+......+...+..+..++.++++.|.+.....  +..++.++.|++++|... ...+..|..+
T Consensus       414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l  493 (635)
T 4g8a_A          414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  493 (635)
T ss_dssp             SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence            3455677778888877766545555567778899999998888775443  778899999999998754 3466778899


Q ss_pred             CCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccC-CCCCEEE
Q 042919          343 TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRS-LSLTVLD  420 (428)
Q Consensus       343 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~  420 (428)
                      ++|+.|++++|++++..|..|.++++|+.|+|++|++++..+..+ .+++|+.|++++|++++..|..+..+ ++|+.|+
T Consensus       494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred             cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence            999999999999998889999999999999999999998888777 88999999999999998899999888 6899999


Q ss_pred             CCCCccC
Q 042919          421 LRDNEFS  427 (428)
Q Consensus       421 l~~~~~~  427 (428)
                      +++||++
T Consensus       574 L~~Np~~  580 (635)
T 4g8a_A          574 LTQNDFA  580 (635)
T ss_dssp             CTTCCBC
T ss_pred             eeCCCCc
Confidence            9999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.1e-32  Score=252.47  Aligned_cols=306  Identities=23%  Similarity=0.315  Sum_probs=212.7

Q ss_pred             hhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCC
Q 042919           74 LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ  153 (428)
Q Consensus        74 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  153 (428)
                      +..+++|++|++.++.+.. .+ .+..+++|++|++++|.+.++.+   +..+++|++|++++|.+..            
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~------------  102 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD------------  102 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC------------
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccC------------
Confidence            4567888999998888773 33 37788889999999888876622   6677777777766665433            


Q ss_pred             ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCC
Q 042919          154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN  233 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (428)
                                   ++ .+..+++|++|++++|.+.+..+   +..+++|+.|++++|...........+++|++|+++++
T Consensus       103 -------------~~-~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~  165 (347)
T 4fmz_A          103 -------------IS-ALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES  165 (347)
T ss_dssp             -------------CG-GGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred             -------------ch-HHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence                         22 23344444444444444443221   23444555555554433333333445555666666665


Q ss_pred             ccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc
Q 042919          234 KFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV  313 (428)
Q Consensus       234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  313 (428)
                      .+... +. +. .+++|++|++++|.+.+..+  +..+++|+++++++|.+.+ .+.  +..+++|+.|++++|.+....
T Consensus       166 ~~~~~-~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          166 KVKDV-TP-IA-NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             CCCCC-GG-GG-GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             CcCCc-hh-hc-cCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCCc
Confidence            55422 21 33 37788888888887764322  6778888888888887763 332  567888888888888888777


Q ss_pred             ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccC
Q 042919          314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSL  392 (428)
Q Consensus       314 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L  392 (428)
                      .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..+..+ .+++|
T Consensus       238 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          238 PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence            788888899999998888754  4678889999999999988743  457888999999999999887777666 78999


Q ss_pred             ceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          393 RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       393 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      +.|++++|++++..|  +..+++|+.|++++|+|+
T Consensus       314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999999986656  788999999999999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.8e-32  Score=248.20  Aligned_cols=307  Identities=23%  Similarity=0.291  Sum_probs=193.1

Q ss_pred             ccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCC
Q 042919           50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKL  129 (428)
Q Consensus        50 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  129 (428)
                      +..+++|++|+++++.+... + .+..+++|++|++++|.+....+  +..+++|++|++++|.+.++   ..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~---~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI---SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GGGTTCTTC
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc---hHHcCCCcC
Confidence            45789999999999998854 3 38899999999999999885433  88999999999999988876   458888888


Q ss_pred             cEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecC
Q 042919          130 QVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN  209 (428)
Q Consensus       130 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  209 (428)
                      ++|+++++.+...+. +...+  +|+++++++|........+..+++|+.|++++|.+....+   +..+++|+.|++++
T Consensus       113 ~~L~l~~n~i~~~~~-~~~l~--~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          113 RELYLNEDNISDISP-LANLT--KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNY  186 (347)
T ss_dssp             SEEECTTSCCCCCGG-GTTCT--TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTT
T ss_pred             CEEECcCCcccCchh-hccCC--ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccC
Confidence            888888776644333 33333  3666776666432223335666666666666666554332   34555566666555


Q ss_pred             CccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCc
Q 042919          210 NSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELP  289 (428)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  289 (428)
                      |.+..... ...                         +++|+.+++++|.+.+..+  +..+++|++|++++|.+. ..+
T Consensus       187 n~l~~~~~-~~~-------------------------l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~  237 (347)
T 4fmz_A          187 NQIEDISP-LAS-------------------------LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLS  237 (347)
T ss_dssp             SCCCCCGG-GGG-------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG
T ss_pred             Cccccccc-ccC-------------------------CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCc
Confidence            55443221 223                         5555555555555543222  455556666666665554 222


Q ss_pred             hhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCC
Q 042919          290 RQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGL  369 (428)
Q Consensus       290 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L  369 (428)
                      .  +..+++|+.|++++|.+.....+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..++++++|
T Consensus       238 ~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          238 P--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             c--hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence            2  445566666666666555554456666666666666666543  345566666666666666665555666666667


Q ss_pred             cEEeCCCCcCCcCCCCccccccCceEEccCCcCC
Q 042919          370 QFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFN  403 (428)
Q Consensus       370 ~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  403 (428)
                      +.|++++|++++..+ ...+++|+.|++++|+++
T Consensus       314 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          314 TTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             CEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence            777777766665444 225666777777766654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.4e-32  Score=262.36  Aligned_cols=358  Identities=22%  Similarity=0.210  Sum_probs=266.8

Q ss_pred             CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919           52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV  131 (428)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  131 (428)
                      .|...++++++++.++. +|..+.  ++|++|++++|.+....+..+.++++|++|++++|.+.++. +..+.++++|++
T Consensus        29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~  104 (562)
T 3a79_B           29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEY  104 (562)
T ss_dssp             ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCE
T ss_pred             ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCE
Confidence            45566999999999985 554443  89999999999999777789999999999999999988763 367899999999


Q ss_pred             EEccCCccccccCCCCCCCcCCccEEEcCCCCCccch--hHhhhCCCccEEEccCCcCCCCCchhhhhcCCCC--CEEEe
Q 042919          132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP--SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKL--DTLYL  207 (428)
Q Consensus       132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l  207 (428)
                      |++++|.+...+..    ...+|++|++++|.+..++  ..+..+++|+.|++++|.+....    +..+++|  +.|++
T Consensus       105 L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L  176 (562)
T 3a79_B          105 LDVSHNRLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILL  176 (562)
T ss_dssp             EECTTSCCCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEE
T ss_pred             EECCCCcCCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEe
Confidence            99999988654444    3446999999999997764  78999999999999999987533    2345556  99999


Q ss_pred             cCCcc--CCccc-C--------------------------CCCCCCccEEecCCCcc-----------------------
Q 042919          208 LNNSL--SGNFQ-L--------------------------PSSKHDLLRLDISHNKF-----------------------  235 (428)
Q Consensus       208 ~~~~~--~~~~~-~--------------------------~~~~~~L~~L~l~~~~~-----------------------  235 (428)
                      ++|.+  ..... .                          ...+++|+.++++++..                       
T Consensus       177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L  256 (562)
T 3a79_B          177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL  256 (562)
T ss_dssp             EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred             ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence            99877  32110 0                          11344556666655420                       


Q ss_pred             -----ccC----CCchhhhcCCCCcEEEccCCCCCCCCCccc-----cCC--------------------------CCCC
Q 042919          236 -----SCQ----LPGNMGKILPELLSLNLSENGFEGRIPSSM-----SEM--------------------------KRLE  275 (428)
Q Consensus       236 -----~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~--------------------------~~L~  275 (428)
                           .+.    .+... . .++|++|++++|.+.+..|..+     .++                          ++|+
T Consensus       257 ~~~~l~~~~~~~~~~~~-~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          257 QHIETTWKCSVKLFQFF-W-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEEEECHHHHHHHHHHH-T-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred             cCCcCcHHHHHHHHHhh-h-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence                 000    00000 1 2378888888887765555444     222                          2355


Q ss_pred             EEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeecccCccCcc--chhhhhcCCCCcEEEcc
Q 042919          276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGK--IQDGLSKATSLLELDLS  351 (428)
Q Consensus       276 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~  351 (428)
                      +|++++|.+.. ..  ....+++|+.|++++|.+.+..  .+..+++|++|++++|.+++.  .+..+..+++|+.|+++
T Consensus       335 ~L~l~~n~~~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          335 MLSISDTPFIH-MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             EEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             EEEccCCCccc-cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            55555555431 11  1156889999999999998743  378899999999999998863  34568899999999999


Q ss_pred             CCcccccCCc-ccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          352 NNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       352 ~~~i~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      +|.+++.+|. .+..+++|+.|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+|++
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~  487 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS  487 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC
Confidence            9999874554 588899999999999999876655443 79999999999998 777777799999999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.7e-32  Score=256.64  Aligned_cols=299  Identities=21%  Similarity=0.187  Sum_probs=232.5

Q ss_pred             cccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCC
Q 042919           49 GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSK  128 (428)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  128 (428)
                      +++++++|++|+++++.+++. | .+..+++|++|++++|.+++. +  +..+++|++|++++|.+.++    .++.+++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~----~~~~l~~  107 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL----DVTPLTK  107 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC----CCTTCTT
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee----ecCCCCc
Confidence            577899999999999999865 4 688999999999999998853 3  78899999999999998876    2889999


Q ss_pred             CcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEec
Q 042919          129 LQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLL  208 (428)
Q Consensus       129 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  208 (428)
                      |++|++++|.+...+  +...+  +|++|++++|.+..++  +..+++|+.|++++|......+   +..+++|+.|+++
T Consensus       108 L~~L~L~~N~l~~l~--~~~l~--~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls  178 (457)
T 3bz5_A          108 LTYLNCDTNKLTKLD--VSQNP--LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCS  178 (457)
T ss_dssp             CCEEECCSSCCSCCC--CTTCT--TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCeec--CCCCC--cCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECC
Confidence            999999999876532  44443  5999999999998875  7788999999999996443442   4578999999999


Q ss_pred             CCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCC
Q 042919          209 NNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL  288 (428)
Q Consensus       209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  288 (428)
                      +|.+....  ...+++|+.|++++|.+.+. +  +.. +++|+.|++++|.+.+ .|  +..+++|++|++++|.+.+ .
T Consensus       179 ~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~--l~~-l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~  248 (457)
T 3bz5_A          179 FNKITELD--VSQNKLLNRLNCDTNNITKL-D--LNQ-NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-L  248 (457)
T ss_dssp             SSCCCCCC--CTTCTTCCEEECCSSCCSCC-C--CTT-CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-C
T ss_pred             CCccceec--cccCCCCCEEECcCCcCCee-c--ccc-CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-c
Confidence            99988753  67889999999999998743 2  333 7899999999999986 34  7889999999999999874 4


Q ss_pred             chhhhcCCCCCCEEeC----------CCcccccccccCCCCCcceeecccCccCccchh--------hhhcCCCCcEEEc
Q 042919          289 PRQFLSGCFSLSFLSL----------SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--------GLSKATSLLELDL  350 (428)
Q Consensus       289 ~~~~~~~~~~L~~L~l----------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~l~~~~~L~~L~l  350 (428)
                      +.   ..+++|+.|++          ++|......+...+++|+.|++++|...+..+.        .+..+++|+.|++
T Consensus       249 ~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L  325 (457)
T 3bz5_A          249 DV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL  325 (457)
T ss_dssp             CC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred             CH---HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence            42   34555555544          444444444466778888888888865433221        2456677888888


Q ss_pred             cCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919          351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       351 ~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~  381 (428)
                      ++|++++ ++  ++++++|+.|++++|++++
T Consensus       326 ~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          326 NNTELTE-LD--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             TTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred             CCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence            8888875 33  7778888888888888775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.5e-32  Score=251.23  Aligned_cols=309  Identities=23%  Similarity=0.235  Sum_probs=159.8

Q ss_pred             CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919           52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV  131 (428)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  131 (428)
                      .++++++|+++++.+....+..+..+++|++|+++++.+....+..+..+++|++|++++|.+.++.+ ..+.++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCE
Confidence            45777777777777775555566777777777777777775555677777777777777777665522 33455555444


Q ss_pred             EEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhH-hhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCC
Q 042919          132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN  210 (428)
Q Consensus       132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  210 (428)
                      |+++                         +|.+..+|.. +..+++|++|++++|.+....+..+ ..+++|++|++++|
T Consensus       122 L~L~-------------------------~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          122 LVLE-------------------------RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSN  175 (390)
T ss_dssp             EECC-------------------------SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-SSCTTCCEEECCSS
T ss_pred             EECC-------------------------CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhc-cCCCCCCEEECCCC
Confidence            4444                         4444444433 2455566666666665553333222 34555555555555


Q ss_pred             ccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919          211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR  290 (428)
Q Consensus       211 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  290 (428)
                      .+...  ....+++|+.++++++.+.. +     ...++|++|++++|.+... +.  ...++|++|++++|.+      
T Consensus       176 ~l~~~--~~~~l~~L~~L~l~~n~l~~-~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l------  238 (390)
T 3o6n_A          176 RLTHV--DLSLIPSLFHANVSYNLLST-L-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNL------  238 (390)
T ss_dssp             CCSBC--CGGGCTTCSEEECCSSCCSE-E-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCC------
T ss_pred             cCCcc--ccccccccceeecccccccc-c-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCC------
Confidence            44332  12233344444444443321 0     0133455555555544422 11  1224455555555544      


Q ss_pred             hhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCc
Q 042919          291 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQ  370 (428)
Q Consensus       291 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~  370 (428)
                                         .+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ .++..+..+++|+
T Consensus       239 -------------------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~  298 (390)
T 3o6n_A          239 -------------------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK  298 (390)
T ss_dssp             -------------------CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCC
T ss_pred             -------------------cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCC
Confidence                               44333444455555555555554444445555555555555555554 2333344455555


Q ss_pred             EEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          371 FLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       371 ~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      .|++++|++++..+....+++|+.|++++|++... +  +..+++|+.|++++|+++
T Consensus       299 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             EEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred             EEECCCCcceecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence            55555555543222211455555555555555422 2  444555555555555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.1e-31  Score=260.67  Aligned_cols=182  Identities=24%  Similarity=0.260  Sum_probs=143.1

Q ss_pred             CCCCccEEecCCCccccC--CCchhhh----------------------cCCCCcEEEccCCCCCC-CCCccccCCCCCC
Q 042919          221 SKHDLLRLDISHNKFSCQ--LPGNMGK----------------------ILPELLSLNLSENGFEG-RIPSSMSEMKRLE  275 (428)
Q Consensus       221 ~~~~L~~L~l~~~~~~~~--~~~~~~~----------------------~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~  275 (428)
                      .+++|+.++++.+.+...  .+.....                      .+++|+.+++..+.... .....+..+++++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            567888888888765321  1111111                      14455666665543332 2334577889999


Q ss_pred             EEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccc---cccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccC
Q 042919          276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE---VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN  352 (428)
Q Consensus       276 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  352 (428)
                      .++++.|.+. ......+..++.++.|++++|.+...   ..+..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus       449 ~l~ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          449 YLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             EEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cccccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            9999999987 44445577899999999999976543   2388899999999999999988889999999999999999


Q ss_pred             CcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-cc-ccCceEEccCCcCC
Q 042919          353 NMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NL-SSLRRLYMHMNAFN  403 (428)
Q Consensus       353 ~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~-~~L~~L~l~~~~~~  403 (428)
                      |++++..+..+.++++|+.|+|++|++++..+..+ .+ ++|+.|++++|++.
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            99997888889999999999999999999888887 55 68999999999976

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-31  Score=253.76  Aligned_cols=314  Identities=22%  Similarity=0.250  Sum_probs=198.5

Q ss_pred             CEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc-ccCCCCCCCcCCccEEEc
Q 042919           81 KVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNL  159 (428)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l  159 (428)
                      +.++..+..++ ..|..+  .++++.|++++|.+.++. +..+.++++|++|++++|.+.. .+..+..++.  |++|++
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~L   87 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFN--LRTLGL   87 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT--CCEEEC
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccCEeChhhhhCCcc--CCEEEC
Confidence            56677766666 345433  368899999999887663 3577888888888888877644 3455655553  888888


Q ss_pred             CCCCCccchhH-hhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCCCcccc
Q 042919          160 RNCSLQALPSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNKFSC  237 (428)
Q Consensus       160 ~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~  237 (428)
                      ++|.+..++.. +..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+.... .....+++|++|++++|.+. 
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-  165 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-  165 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-
Confidence            88888777653 5677788888888887775444433 56777888888777765432 23456667777777777665 


Q ss_pred             CCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--c
Q 042919          238 QLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--F  315 (428)
Q Consensus       238 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~  315 (428)
                      .++......+++|+.|++.+|.+....+..+..+++|++|++++|...+.++...+ ...+|+.|++++|.+.....  +
T Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~  244 (477)
T 2id5_A          166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAV  244 (477)
T ss_dssp             SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHH
T ss_pred             ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHh
Confidence            33433333366777777777766655555666677777777776665544444332 22356666666665554432  5


Q ss_pred             CCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCce
Q 042919          316 PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRR  394 (428)
Q Consensus       316 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~  394 (428)
                      ..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+.++++|+.|+|++|.+++..+..+ .+++|+.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  324 (477)
T 2id5_A          245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET  324 (477)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred             cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence            555666666666666555555555556666666666666655555556666666666666666655444444 5556666


Q ss_pred             EEccCCcCC
Q 042919          395 LYMHMNAFN  403 (428)
Q Consensus       395 L~l~~~~~~  403 (428)
                      |++++|++.
T Consensus       325 L~l~~N~l~  333 (477)
T 2id5_A          325 LILDSNPLA  333 (477)
T ss_dssp             EECCSSCEE
T ss_pred             EEccCCCcc
Confidence            666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-31  Score=253.60  Aligned_cols=298  Identities=20%  Similarity=0.174  Sum_probs=196.4

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK  133 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  133 (428)
                      +++++|+++++.++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+..+ +...+.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEE
Confidence            5788999998888877777888889999999998888876678888888999999998888766 334567888888888


Q ss_pred             ccCCccccc-cCCCCCCCcCCccEEEcCCCCCccc-hhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCc
Q 042919          134 LSNSLVKIE-TEEFPGLPEYQLKALNLRNCSLQAL-PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS  211 (428)
Q Consensus       134 l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  211 (428)
                      +++|.+... +..+...+  +|++|++++|.+..+ +..+..+++|+.|++++|.+.... ...+..+++|+.|++++|.
T Consensus       111 Ls~n~i~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLY--NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             CTTSCCCEECTTTTTTCT--TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCC
T ss_pred             CCCCccccCChhHccccc--cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCc
Confidence            887776433 33444444  477777777777555 345666777777777777776433 3333566777777777766


Q ss_pred             cCCccc-CCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919          212 LSGNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR  290 (428)
Q Consensus       212 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  290 (428)
                      +..... ....                         +++|+.|++++|...+..+.......+|++|++++|.+. .++.
T Consensus       188 i~~~~~~~~~~-------------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~  241 (477)
T 2id5_A          188 INAIRDYSFKR-------------------------LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPY  241 (477)
T ss_dssp             CCEECTTCSCS-------------------------CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCH
T ss_pred             CcEeChhhccc-------------------------CcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCH
Confidence            554221 2223                         445555555554443333333333445666666666555 4554


Q ss_pred             hhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCC
Q 042919          291 QFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSG  368 (428)
Q Consensus       291 ~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  368 (428)
                      ..+..+++|+.|++++|.+.....  +..+++|++|++++|.+.+..+..|..+++|+.|++++|.++...+..|..+++
T Consensus       242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  321 (477)
T 2id5_A          242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN  321 (477)
T ss_dssp             HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred             HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence            445556666666666666554332  556666777777777666666666667777777777777776555556667777


Q ss_pred             CcEEeCCCCcCCc
Q 042919          369 LQFLDISENQLCG  381 (428)
Q Consensus       369 L~~L~L~~~~~~~  381 (428)
                      |+.|++++|++..
T Consensus       322 L~~L~l~~N~l~c  334 (477)
T 2id5_A          322 LETLILDSNPLAC  334 (477)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             cCEEEccCCCccC
Confidence            7777777776653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.5e-31  Score=250.72  Aligned_cols=340  Identities=24%  Similarity=0.244  Sum_probs=173.7

Q ss_pred             ecccccCCCCCcEEeccCCcCCCCchHhhhcCCC-------------CCEEEccCCccCcchhhhhccCCCCcEEeCCCC
Q 042919           46 VNTGICELKNLVELDLSKNNLYGHLSPCLSNLTH-------------IKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN  112 (428)
Q Consensus        46 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  112 (428)
                      +|++++++++|++|++++|.+.+..|..+.++++             +++|+++++.+++ .|.   ..++|++|++++|
T Consensus        26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n  101 (454)
T 1jl5_A           26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE---LPPHLESLVASCN  101 (454)
T ss_dssp             --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS---CCTTCSEEECCSS
T ss_pred             CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC---CcCCCCEEEccCC
Confidence            3455667777777777766665555555555544             3666666666553 222   1355666666666


Q ss_pred             ccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCc
Q 042919          113 NFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFP  192 (428)
Q Consensus       113 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~  192 (428)
                      .+.++.  .   ..++|++|++++|.+...+.    .+ .+|++|++++|.+..+| .+..+++|+.|++++|.+.. .+
T Consensus       102 ~l~~lp--~---~~~~L~~L~l~~n~l~~l~~----~~-~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp  169 (454)
T 1jl5_A          102 SLTELP--E---LPQSLKSLLVDNNNLKALSD----LP-PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LP  169 (454)
T ss_dssp             CCSSCC--C---CCTTCCEEECCSSCCSCCCS----CC-TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CC
T ss_pred             cCCccc--c---ccCCCcEEECCCCccCcccC----CC-CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cC
Confidence            655531  1   12556666666554432211    11 23666666666555555 35555566666666655543 22


Q ss_pred             hhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCC
Q 042919          193 SWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK  272 (428)
Q Consensus       193 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  272 (428)
                      .    ...+|++|++++|.+.... ....+++|+.|++++|.+.+ ++..    .++|++|++++|.+. ..+ .+..++
T Consensus       170 ~----~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~  237 (454)
T 1jl5_A          170 D----LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELP-ELQNLP  237 (454)
T ss_dssp             C----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCC-CCTTCT
T ss_pred             C----CcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-ccc-ccCCCC
Confidence            1    1235555555555555432 34455555555555555442 2211    234555555555544 223 244555


Q ss_pred             CCCEEECcCcccCCCCchhh----------------hcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccch
Q 042919          273 RLESLDLSSNNFSGELPRQF----------------LSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ  336 (428)
Q Consensus       273 ~L~~L~l~~~~~~~~~~~~~----------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  336 (428)
                      +|++|++++|.+. .++...                -..+++|+.|++++|.+.+...+  .++|++|++++|.+++.  
T Consensus       238 ~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N~l~~i--  312 (454)
T 1jl5_A          238 FLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSL--  312 (454)
T ss_dssp             TCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCC--CTTCCEEECCSSCCSEE--
T ss_pred             CCCEEECCCCcCC-cccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCc--CCcCCEEECcCCcCCcc--
Confidence            5555555555444 222100                00124455555555544432211  24566666666655431  


Q ss_pred             hhhhcC-CCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCc--cCCcccccC
Q 042919          337 DGLSKA-TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNG--SIPGALRRS  413 (428)
Q Consensus       337 ~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~  413 (428)
                         ... ++|+.|++++|++++ +|..   +++|+.|++++|++++.. .  .+++|+.|++++|++.+  ..|..++.+
T Consensus       313 ---~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp-~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          313 ---CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVP-E--LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             ---CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C--CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             ---cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccccc-c--hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence               122 578888888888874 5543   478999999999888543 3  47899999999999987  678888777


Q ss_pred             -------------CCCCEEECCCCccCC
Q 042919          414 -------------LSLTVLDLRDNEFSG  428 (428)
Q Consensus       414 -------------~~L~~L~l~~~~~~~  428 (428)
                                   ++|+.|++++|+++|
T Consensus       383 ~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          383 RMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             ECCC------------------------
T ss_pred             hhcccccccccccCcCCEEECCCCcCCc
Confidence                         789999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=7.3e-31  Score=257.08  Aligned_cols=308  Identities=23%  Similarity=0.234  Sum_probs=157.2

Q ss_pred             CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919           52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV  131 (428)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  131 (428)
                      .+++++.++++++.+...++..+..+++|++|+++++.+....+..|..+++|++|++++|.+.++. +..++.+++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC-HHHHcCCCCCCE
Confidence            3466677777776666555555666777777777777666555556667777777777777665542 233444444444


Q ss_pred             EEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhH-hhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCC
Q 042919          132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN  210 (428)
Q Consensus       132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  210 (428)
                      |+                         +++|.+..+|.. +..+++|+.|++++|.+....+..+ ..+++|+.|++++|
T Consensus       128 L~-------------------------L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N  181 (597)
T 3oja_B          128 LV-------------------------LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSN  181 (597)
T ss_dssp             EE-------------------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECTTS
T ss_pred             EE-------------------------eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh-hcCCcCcEEECcCC
Confidence            44                         444444444433 2455566666666665554333322 34555555555555


Q ss_pred             ccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919          211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR  290 (428)
Q Consensus       211 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  290 (428)
                      .+...  ....+++|+.|++++|.+.+ +     ..+++|+.|++++|.+..... .  ..++|++|++++|.       
T Consensus       182 ~l~~~--~~~~l~~L~~L~l~~n~l~~-l-----~~~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~-------  243 (597)
T 3oja_B          182 RLTHV--DLSLIPSLFHANVSYNLLST-L-----AIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNN-------  243 (597)
T ss_dssp             CCSBC--CGGGCTTCSEEECCSSCCSE-E-----ECCTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSC-------
T ss_pred             CCCCc--ChhhhhhhhhhhcccCcccc-c-----cCCchhheeeccCCccccccc-c--cCCCCCEEECCCCC-------
Confidence            44432  12233344444444443321 0     013345555555554432111 1  12344555555544       


Q ss_pred             hhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCc
Q 042919          291 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQ  370 (428)
Q Consensus       291 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~  370 (428)
                                        +.+...+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++ +|..+..+++|+
T Consensus       244 ------------------l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~  304 (597)
T 3oja_B          244 ------------------LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK  304 (597)
T ss_dssp             ------------------CCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCC
T ss_pred             ------------------CCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCc
Confidence                              4444344455555555555555554445555555555555555555552 344444455555


Q ss_pred             EEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          371 FLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       371 ~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      .|+|++|.++.. +..+ .+++|+.|++++|++... +  +..+++|+.|++++|+++
T Consensus       305 ~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          305 VLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             EEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred             EEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence            555555555522 2222 455555555555555422 2  444555555555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=1.2e-30  Score=246.20  Aligned_cols=339  Identities=19%  Similarity=0.178  Sum_probs=255.5

Q ss_pred             CcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEcc
Q 042919           56 LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS  135 (428)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  135 (428)
                      ++.............+..+.++++|++|+++++.+.+. + .+..+++|++|++++|.+.++    .++.+++|++|+++
T Consensus        20 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls   93 (457)
T 3bz5_A           20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACD   93 (457)
T ss_dssp             HHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC----CCTTCTTCSEEECC
T ss_pred             HHHHHHHhcCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE----ccccCCCCCEEECc
Confidence            33333334444444455688899999999999998853 4 689999999999999999886    28899999999999


Q ss_pred             CCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc
Q 042919          136 NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN  215 (428)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  215 (428)
                      +|.+...+  +...+  +|++|++++|.+..++  +..+++|+.|++++|.+... +   +..+++|++|++++|...+.
T Consensus        94 ~N~l~~~~--~~~l~--~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~  163 (457)
T 3bz5_A           94 SNKLTNLD--VTPLT--KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNKKITK  163 (457)
T ss_dssp             SSCCSCCC--CTTCT--TCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCSCCCC
T ss_pred             CCCCceee--cCCCC--cCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCCcccc
Confidence            99876542  44444  5999999999998886  78899999999999998864 2   46889999999999965443


Q ss_pred             ccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcC
Q 042919          216 FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSG  295 (428)
Q Consensus       216 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  295 (428)
                      . ....+++|+.|++++|.+.+ ++  +. .+++|+.|++++|.+.+.   .+..+++|++|++++|.+.+ ++   +..
T Consensus       164 ~-~~~~l~~L~~L~ls~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~  231 (457)
T 3bz5_A          164 L-DVTPQTQLTTLDCSFNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTP  231 (457)
T ss_dssp             C-CCTTCTTCCEEECCSSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTT
T ss_pred             c-ccccCCcCCEEECCCCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccc
Confidence            3 45678999999999999974 44  33 388999999999999854   47889999999999999984 55   568


Q ss_pred             CCCCCEEeCCCcccccccccCCCCCcceee----------cccCccCccchhhhhcCCCCcEEEccCCcccccCCc----
Q 042919          296 CFSLSFLSLSDNHLQGEVVFPNSTNLCWLY----------LNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPP----  361 (428)
Q Consensus       296 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~----------l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~----  361 (428)
                      +++|+.|++++|.+.+.. ...+++|+.|+          +++|...+..+  +..+++|+.|++++|...+.+|.    
T Consensus       232 l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~  308 (457)
T 3bz5_A          232 LTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAG  308 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred             cCCCCEEEeeCCcCCCcC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCc
Confidence            899999999999988654 45555555554          44444333332  45678899999988865433332    


Q ss_pred             ----ccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCc------------ccccCCCCCEEECCCCc
Q 042919          362 ----WFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPG------------ALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       362 ----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------~~~~~~~L~~L~l~~~~  425 (428)
                          .+.++++|+.|++++|++++. + ...+++|+.|++++|++.+. +.            +...+..|..+++++|.
T Consensus       309 L~~L~l~~~~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~l~~l-~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~  385 (457)
T 3bz5_A          309 ITELDLSQNPKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAHIQDF-SSVGKIPALNNNFEAEGQTITMPKETLTNNS  385 (457)
T ss_dssp             CSCCCCTTCTTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSCCCBC-TTGGGSSGGGTSEEEEEEEEECCCBCCBTTB
T ss_pred             ceEechhhcccCCEEECCCCccccc-c-cccCCcCcEEECCCCCCCCc-cccccccccCCcEEecceeeecCccccccCc
Confidence                256678888888888888864 2 22788888999988888742 11            01123456777777777


Q ss_pred             cCC
Q 042919          426 FSG  428 (428)
Q Consensus       426 ~~~  428 (428)
                      ++|
T Consensus       386 l~g  388 (457)
T 3bz5_A          386 LTI  388 (457)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.4e-34  Score=270.61  Aligned_cols=370  Identities=22%  Similarity=0.198  Sum_probs=250.0

Q ss_pred             CCCcEEeccCCcCCCCchHh-hhcCCCCCEEEccCCccCc----chhhhhccCCCCcEEeCCCCccCCccccccccCCC-
Q 042919           54 KNLVELDLSKNNLYGHLSPC-LSNLTHIKVLDLSSNQLTG----NLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHS-  127 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-  127 (428)
                      ++|++|+++++.++...... +..+++|++|++++|.+..    ..+..+..+++|++|++++|.+.+.........++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            56888888888877544333 6778888888888888773    34566777888888888888776543322333344 


Q ss_pred             ---CCcEEEccCCcccc-----ccCCCCCCCcCCccEEEcCCCCCccc-hhHhh-----hCCCccEEEccCCcCCCCCch
Q 042919          128 ---KLQVFKLSNSLVKI-----ETEEFPGLPEYQLKALNLRNCSLQAL-PSILL-----QQLDLRFIDLSHNKLQGIFPS  193 (428)
Q Consensus       128 ---~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~-----~~~~L~~L~l~~~~~~~~~~~  193 (428)
                         +|++|++++|.+..     .+..+...+  +|++|++++|.+... +..+.     ..++|+.|++++|.+++....
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~--~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP--TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCT--TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCC--ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence               68888888877653     233444444  489999998887432 22222     245799999999988765432


Q ss_pred             h---hhhcCCCCCEEEecCCccCCccc-CC-----CCCCCccEEecCCCccccC----CCchhhhcCCCCcEEEccCCCC
Q 042919          194 W---LLQNNTKLDTLYLLNNSLSGNFQ-LP-----SSKHDLLRLDISHNKFSCQ----LPGNMGKILPELLSLNLSENGF  260 (428)
Q Consensus       194 ~---~~~~~~~L~~L~l~~~~~~~~~~-~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~  260 (428)
                      .   .+..+++|++|++++|.+..... ..     ...++|++|++++|.++..    ++..+. .+++|++|++++|.+
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBC
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcC
Confidence            2   23567899999999988654211 01     1345899999999988743    233333 378899999999887


Q ss_pred             CCCC-----CccccCCCCCCEEECcCcccCCCC---chhhhcCCCCCCEEeCCCcccccccc-------cCCCCCcceee
Q 042919          261 EGRI-----PSSMSEMKRLESLDLSSNNFSGEL---PRQFLSGCFSLSFLSLSDNHLQGEVV-------FPNSTNLCWLY  325 (428)
Q Consensus       261 ~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~L~~L~  325 (428)
                      .+..     +..+..+++|++|++++|.+++..   ....+..+++|+.|++++|.+.+...       ....++|++|+
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence            6432     222335788999999999876321   12234568899999999988765432       23346899999


Q ss_pred             cccCccCccc----hhhhhcCCCCcEEEccCCcccccCCcccCC-----CCCCcEEeCCCCcCCc----CCCCcc-cccc
Q 042919          326 LNNNHFSGKI----QDGLSKATSLLELDLSNNMLYGQIPPWFGN-----LSGLQFLDISENQLCG----SVPSSF-NLSS  391 (428)
Q Consensus       326 l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-----~~~L~~L~L~~~~~~~----~~~~~~-~~~~  391 (428)
                      +++|.+++..    +..+..+++|++|++++|.+++..+..+..     .++|++|++++|++++    ..+..+ .+++
T Consensus       320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence            9999887653    445667789999999999887554433332     6789999999998875    344444 6789


Q ss_pred             CceEEccCCcCCccCCcc----cc-cCCCCCEEECCCCcc
Q 042919          392 LRRLYMHMNAFNGSIPGA----LR-RSLSLTVLDLRDNEF  426 (428)
Q Consensus       392 L~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~  426 (428)
                      |++|++++|++.......    +. ...+|+.|++.++.+
T Consensus       400 L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             ccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence            999999999887432222    21 234688888777654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=2.1e-30  Score=244.38  Aligned_cols=334  Identities=24%  Similarity=0.254  Sum_probs=234.5

Q ss_pred             CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCC-------------CcEEeCCCCccCCcc
Q 042919           52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS-------------LEYLSLDDNNFEGLF  118 (428)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~~~  118 (428)
                      +..+|++|.++++.+ +.+|..+.++++|++|++++|.+.+..|..++.+++             +++|++++|.++++.
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            468999999999999 588999999999999999999888778888887775             599999999988762


Q ss_pred             ccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhc
Q 042919          119 SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQN  198 (428)
Q Consensus       119 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  198 (428)
                      .     -.++|++|+++++.+...+...     .+|++|++++|.+..++..   .++|++|++++|.+.. ++ . +..
T Consensus        88 ~-----~~~~L~~L~l~~n~l~~lp~~~-----~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp-~-~~~  151 (454)
T 1jl5_A           88 E-----LPPHLESLVASCNSLTELPELP-----QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LP-E-LQN  151 (454)
T ss_dssp             S-----CCTTCSEEECCSSCCSSCCCCC-----TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CC-C-CTT
T ss_pred             C-----CcCCCCEEEccCCcCCcccccc-----CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-Cc-c-cCC
Confidence            2     2479999999998876543321     3699999999999877643   2699999999999885 55 3 578


Q ss_pred             CCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEE
Q 042919          199 NTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLD  278 (428)
Q Consensus       199 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  278 (428)
                      +++|++|++++|.+....   ...++|++|++++|.+.+ ++ .+.. +++|+.|++++|.+.+ .+..   .++|++|+
T Consensus       152 l~~L~~L~l~~N~l~~lp---~~~~~L~~L~L~~n~l~~-l~-~~~~-l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLKK-LPDL---PLSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSS-CC-CCTT-CTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred             CCCCCEEECCCCcCcccC---CCcccccEEECcCCcCCc-Cc-cccC-CCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence            999999999999988643   334699999999999984 55 4444 8999999999999874 3332   36899999


Q ss_pred             CcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccc-
Q 042919          279 LSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG-  357 (428)
Q Consensus       279 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-  357 (428)
                      +++|.+. .++.  +..+++|+.|++++|.+.....  .+++|++|++++|.+.+. +.   .+++|+.|++++|.+++ 
T Consensus       222 l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          222 AGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEE
T ss_pred             CcCCcCC-cccc--cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcc
Confidence            9999987 6764  6789999999999998876433  347788888888877642 21   13566666666666653 


Q ss_pred             -cCCcc-------------cCCC-CCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECC
Q 042919          358 -QIPPW-------------FGNL-SGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLR  422 (428)
Q Consensus       358 -~~~~~-------------~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  422 (428)
                       ..|..             +..+ ++|+.|++++|++++. +.  .+++|+.|++++|.++ .+|.   .+++|+.|+++
T Consensus       293 ~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l-p~--~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~  365 (454)
T 1jl5_A          293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PA--LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVE  365 (454)
T ss_dssp             SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             cCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccc-cc--cCCcCCEEECCCCccc-cccc---hhhhccEEECC
Confidence             12211             1122 4788888888887753 32  2588999999999888 5665   47899999999


Q ss_pred             CCccCC
Q 042919          423 DNEFSG  428 (428)
Q Consensus       423 ~~~~~~  428 (428)
                      +|+++|
T Consensus       366 ~N~l~~  371 (454)
T 1jl5_A          366 YNPLRE  371 (454)
T ss_dssp             SSCCSS
T ss_pred             CCCCCc
Confidence            999876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=5.1e-29  Score=231.71  Aligned_cols=297  Identities=21%  Similarity=0.184  Sum_probs=203.2

Q ss_pred             eeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccc
Q 042919           42 LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFN  121 (428)
Q Consensus        42 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  121 (428)
                      +..+.+..+.++++|++|+++++.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+..+ +..
T Consensus        57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~  135 (390)
T 3o6n_A           57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRG  135 (390)
T ss_dssp             ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTT
T ss_pred             hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHH
Confidence            4444455578999999999999999977777899999999999999999977788899999999999999998866 223


Q ss_pred             cccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCC
Q 042919          122 SLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTK  201 (428)
Q Consensus       122 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  201 (428)
                      .+..+++|++|++++|.+....                        +..+..+++|+.|++++|.+....    ...+++
T Consensus       136 ~~~~l~~L~~L~L~~n~l~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~  187 (390)
T 3o6n_A          136 IFHNTPKLTTLSMSNNNLERIE------------------------DDTFQATTSLQNLQLSSNRLTHVD----LSLIPS  187 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCC------------------------TTTTSSCTTCCEEECCSSCCSBCC----GGGCTT
T ss_pred             HhcCCCCCcEEECCCCccCccC------------------------hhhccCCCCCCEEECCCCcCCccc----cccccc
Confidence            4577777777777766553221                        122333444444444444444221    123455


Q ss_pred             CCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcC
Q 042919          202 LDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSS  281 (428)
Q Consensus       202 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (428)
                      |+.++++++.+...    ...++|++|+++++.+. .++...   .++|+.|++++|.+.+.  ..+..+++|++|++++
T Consensus       188 L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~  257 (390)
T 3o6n_A          188 LFHANVSYNLLSTL----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY  257 (390)
T ss_dssp             CSEEECCSSCCSEE----ECCSSCSEEECCSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             cceeeccccccccc----CCCCcceEEECCCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCC
Confidence            55555555544322    12235666666666654 222222   46788888888877643  5677788888888888


Q ss_pred             cccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCC
Q 042919          282 NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP  360 (428)
Q Consensus       282 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~  360 (428)
                      |.+. ......+..+++|+.|++++|.+..... ...+++|++|++++|.+.. .+..+..+++|+.|++++|.++.. +
T Consensus       258 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~  334 (390)
T 3o6n_A          258 NELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K  334 (390)
T ss_dssp             SCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred             CcCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C
Confidence            8776 3333446677788888888877765443 4567788888888887763 444566778888888888887633 3


Q ss_pred             cccCCCCCCcEEeCCCCcCCcC
Q 042919          361 PWFGNLSGLQFLDISENQLCGS  382 (428)
Q Consensus       361 ~~~~~~~~L~~L~L~~~~~~~~  382 (428)
                        +..+++|+.|++++|++...
T Consensus       335 --~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          335 --LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             --CCTTCCCSEEECCSSCEEHH
T ss_pred             --chhhccCCEEEcCCCCccch
Confidence              66677888888888877653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.8e-28  Score=222.63  Aligned_cols=264  Identities=21%  Similarity=0.265  Sum_probs=212.1

Q ss_pred             CccEEEcCCCCCccchh-HhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecC
Q 042919          153 QLKALNLRNCSLQALPS-ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDIS  231 (428)
Q Consensus       153 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  231 (428)
                      +++.|++++|.+..++. .+..+++|+.|++++|.+....+..+ ..+++|++|++++|.+.......  .++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLKELPEKM--PKTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEECCCCcCCccChhh--cccccEEECC
Confidence            47777777777766654 56777888888888888776555544 57888888888888777543322  3789999999


Q ss_pred             CCccccCCCchhhhcCCCCcEEEccCCCCCC--CCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccc
Q 042919          232 HNKFSCQLPGNMGKILPELLSLNLSENGFEG--RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL  309 (428)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  309 (428)
                      +|.+. ..+......+++|+.|++++|.+..  ..+..+..+++|++|++++|.+. .++...   .++|+.|++++|.+
T Consensus       130 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l  204 (330)
T 1xku_A          130 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKI  204 (330)
T ss_dssp             SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCC
T ss_pred             CCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcC
Confidence            99887 4444444458999999999998863  56677889999999999999987 555433   37999999999998


Q ss_pred             cccc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919          310 QGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF  387 (428)
Q Consensus       310 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  387 (428)
                      ....  .+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            8654  4889999999999999998877778999999999999999998 788889999999999999999998777666


Q ss_pred             -------ccccCceEEccCCcCCc--cCCcccccCCCCCEEECCCCc
Q 042919          388 -------NLSSLRRLYMHMNAFNG--SIPGALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       388 -------~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~  425 (428)
                             ..++++.|++++|++..  +.|..|..+++++.+++++|+
T Consensus       284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence                   24789999999999863  567889999999999999985

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.3e-28  Score=222.15  Aligned_cols=263  Identities=21%  Similarity=0.254  Sum_probs=206.3

Q ss_pred             CccEEEcCCCCCccch-hHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecC
Q 042919          153 QLKALNLRNCSLQALP-SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDIS  231 (428)
Q Consensus       153 ~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  231 (428)
                      +++.|++++|.+..++ ..+..+++|+.|++++|.+....+..+ ..+++|++|++++|.+........  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS-TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh-hCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence            3666777777666553 356677777777777777765444443 567777888887777765433322  788888888


Q ss_pred             CCccccCCCchhhhcCCCCcEEEccCCCCCC--CCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccc
Q 042919          232 HNKFSCQLPGNMGKILPELLSLNLSENGFEG--RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL  309 (428)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  309 (428)
                      +|.+. .++......+++|+.|++++|.+..  ..+..+..+ +|++|++++|.+. .++...   .++|+.|++++|.+
T Consensus       132 ~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKI  205 (332)
T ss_dssp             SSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCC
T ss_pred             CCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcC
Confidence            88887 4555444458999999999998853  456667777 8999999999987 465543   37999999999998


Q ss_pred             cccc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919          310 QGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF  387 (428)
Q Consensus       310 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  387 (428)
                      ....  .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence            8765  3889999999999999999888788999999999999999998 788889999999999999999998777665


Q ss_pred             -c------cccCceEEccCCcCC--ccCCcccccCCCCCEEECCCCc
Q 042919          388 -N------LSSLRRLYMHMNAFN--GSIPGALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       388 -~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~  425 (428)
                       .      .++|+.|++.+|++.  ...|..|..+++|+.+++++|+
T Consensus       285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence             2      478999999999987  5778889999999999999985

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=8.4e-32  Score=256.40  Aligned_cols=390  Identities=21%  Similarity=0.203  Sum_probs=285.1

Q ss_pred             ceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCC----CchHhhhcCCCCCEEEccCCccCcchhhhh-
Q 042919           24 SITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYG----HLSPCLSNLTHIKVLDLSSNQLTGNLQSVI-   98 (428)
Q Consensus        24 ~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-   98 (428)
                      .++++.+..  ..+.+.+.    ...+..+++|++|++++|.+.+    .++..+..+++|++|+++++.+....+..+ 
T Consensus         4 ~l~~L~Ls~--~~l~~~~~----~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~   77 (461)
T 1z7x_W            4 DIQSLDIQC--EELSDARW----AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL   77 (461)
T ss_dssp             EEEEEEEES--CCCCHHHH----HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cceehhhhh--cccCchhH----HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence            466777754  23333331    1235688999999999999874    345677888999999999998875444433 


Q ss_pred             ccCC----CCcEEeCCCCccCCcc---ccccccCCCCCcEEEccCCccccccC-CCC---CCCcCCccEEEcCCCCCcc-
Q 042919           99 ANIK----SLEYLSLDDNNFEGLF---SFNSLKNHSKLQVFKLSNSLVKIETE-EFP---GLPEYQLKALNLRNCSLQA-  166 (428)
Q Consensus        99 ~~l~----~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~---~~~~~~L~~L~l~~~~~~~-  166 (428)
                      ..++    +|++|++++|.+.+..   .+..+..+++|++|++++|.+..... .+.   ..+.++|++|++++|.+.. 
T Consensus        78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  157 (461)
T 1z7x_W           78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  157 (461)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence            3455    7999999999887531   24578899999999999988743211 111   1112359999999998853 


Q ss_pred             ----chhHhhhCCCccEEEccCCcCCCCCchhhhh----cCCCCCEEEecCCccCCc-----ccCCCCCCCccEEecCCC
Q 042919          167 ----LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQ----NNTKLDTLYLLNNSLSGN-----FQLPSSKHDLLRLDISHN  233 (428)
Q Consensus       167 ----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~  233 (428)
                          ++..+..+++|++|++++|.+.+.....+..    ..++|+.|++++|.+...     ......+++|++|++++|
T Consensus       158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence                5677888899999999999987654444433    356999999999988752     233446789999999999


Q ss_pred             ccccCCCchh----hhcCCCCcEEEccCCCCCCC----CCccccCCCCCCEEECcCcccCCCCchhh----hcCCCCCCE
Q 042919          234 KFSCQLPGNM----GKILPELLSLNLSENGFEGR----IPSSMSEMKRLESLDLSSNNFSGELPRQF----LSGCFSLSF  301 (428)
Q Consensus       234 ~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~  301 (428)
                      .+.+.....+    ...+++|++|++++|.++..    .+..+..+++|++|++++|.+.+......    ....++|+.
T Consensus       238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  317 (461)
T 1z7x_W          238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  317 (461)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence            8864432222    22378999999999988753    45667779999999999998763322221    123369999


Q ss_pred             EeCCCcccccccc------cCCCCCcceeecccCccCccchhhhhc-----CCCCcEEEccCCcccc----cCCcccCCC
Q 042919          302 LSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKIQDGLSK-----ATSLLELDLSNNMLYG----QIPPWFGNL  366 (428)
Q Consensus       302 L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~i~~----~~~~~~~~~  366 (428)
                      |++++|.+.....      +..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .++..+..+
T Consensus       318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  397 (461)
T 1z7x_W          318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN  397 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence            9999999886532      567799999999999988765555543     6899999999999986    567788889


Q ss_pred             CCCcEEeCCCCcCCcCCCCcc------ccccCceEEccCCcCCccCCccc----ccCCCCCEE
Q 042919          367 SGLQFLDISENQLCGSVPSSF------NLSSLRRLYMHMNAFNGSIPGAL----RRSLSLTVL  419 (428)
Q Consensus       367 ~~L~~L~L~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L  419 (428)
                      ++|++|++++|++++.....+      ...+|+.|++.++.+....+..+    ...|+|+.+
T Consensus       398 ~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~  460 (461)
T 1z7x_W          398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  460 (461)
T ss_dssp             CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence            999999999999886544443      23479999999998875444433    335666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.6e-31  Score=262.46  Aligned_cols=374  Identities=14%  Similarity=0.099  Sum_probs=229.7

Q ss_pred             CCCCCcEEeccCCcCCCCchHhhhc-CCC-CCEEEccCCc-cCc-chhhhhccCCCCcEEeCCCCccCCccc---ccccc
Q 042919           52 ELKNLVELDLSKNNLYGHLSPCLSN-LTH-IKVLDLSSNQ-LTG-NLQSVIANIKSLEYLSLDDNNFEGLFS---FNSLK  124 (428)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~  124 (428)
                      ++++|++|+++++.+++..+..+.. ++. |++|++.+|. +.. ..+.....+++|++|++++|.+.+...   .....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            6788888888888777655555555 344 8888888875 221 223344578888888888887655421   12456


Q ss_pred             CCCCCcEEEccCCcccc-c----cCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCC---CCCchhhh
Q 042919          125 NHSKLQVFKLSNSLVKI-E----TEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQ---GIFPSWLL  196 (428)
Q Consensus       125 ~~~~L~~L~l~~~~~~~-~----~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~  196 (428)
                      .+++|++|+++++.+.. .    ...+...  ++|++|++++|.+..++..+..+++|+.|++++....   .... ..+
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l  266 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNC--RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY-MNL  266 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHC--TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS-SCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhC--CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHH-HHh
Confidence            77888888888776641 1    1111122  3588888888888778888888888888888753221   0111 112


Q ss_pred             hcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCE
Q 042919          197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES  276 (428)
Q Consensus       197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  276 (428)
                      ..+++|+.+.++++...........+++|++|++++|.+++.....+...+++|++|++.++......+.....+++|++
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence            45667777777765444444445567778888888777543333233344777787777733211112233355677888


Q ss_pred             EECcC----------c-ccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC-CCCCcceeecc----cCccCcc----
Q 042919          277 LDLSS----------N-NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP-NSTNLCWLYLN----NNHFSGK----  334 (428)
Q Consensus       277 L~l~~----------~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~----~~~~~~~----  334 (428)
                      |++++          | .+++.........+++|+.|+++.+.+.+...  +. .+++|++|+++    .+.+++.    
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            88773          2 33322222234457778888776666654332  32 36778888875    3345432    


Q ss_pred             -chhhhhcCCCCcEEEccCCc--ccccCCccc-CCCCCCcEEeCCCCcCCcCCCCcc--ccccCceEEccCCcCCcc-CC
Q 042919          335 -IQDGLSKATSLLELDLSNNM--LYGQIPPWF-GNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGS-IP  407 (428)
Q Consensus       335 -~~~~l~~~~~L~~L~l~~~~--i~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~-~~  407 (428)
                       ....+..+++|+.|++++|.  +++.....+ ..+++|+.|++++|++++.....+  .+++|+.|++++|+++.. .+
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  506 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA  506 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence             22335567788888886543  443333333 236778888888887765333322  677888888888886533 34


Q ss_pred             cccccCCCCCEEECCCCccCC
Q 042919          408 GALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       408 ~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      ..+..+++|+.|++++|++++
T Consensus       507 ~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          507 AAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHHHHCSSCCEEEEESCBCCT
T ss_pred             HHHHhcCccCeeECcCCcCCH
Confidence            444667888888888888764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=3.9e-28  Score=237.78  Aligned_cols=295  Identities=21%  Similarity=0.199  Sum_probs=196.8

Q ss_pred             eeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccc
Q 042919           42 LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFN  121 (428)
Q Consensus        42 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  121 (428)
                      +..+.+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+..+ +..
T Consensus        63 l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~  141 (597)
T 3oja_B           63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRG  141 (597)
T ss_dssp             ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTT
T ss_pred             CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHH
Confidence            4455556678999999999999999988888999999999999999999987788889999999999999998866 334


Q ss_pred             cccCCCCCcEEEccCCcccccc-CCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCC
Q 042919          122 SLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNT  200 (428)
Q Consensus       122 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  200 (428)
                      .++.+++|++|++++|.+.... ..+...+  +|++|++++|.+..++  +..+++|+.|++++|.+.            
T Consensus       142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~------------  205 (597)
T 3oja_B          142 IFHNTPKLTTLSMSNNNLERIEDDTFQATT--SLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS------------  205 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCCTTTTTTCT--TCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS------------
T ss_pred             HhccCCCCCEEEeeCCcCCCCChhhhhcCC--cCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc------------
Confidence            4677888777777776653322 2233332  2555555555554443  233445555555544433            


Q ss_pred             CCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECc
Q 042919          201 KLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS  280 (428)
Q Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  280 (428)
                                   ..    ...++|+.|++++|.+. .++..+   .++|+.|++++|.+.+  +.++..+++|++|+++
T Consensus       206 -------------~l----~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls  262 (597)
T 3oja_B          206 -------------TL----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLS  262 (597)
T ss_dssp             -------------EE----ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECC
T ss_pred             -------------cc----cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECC
Confidence                         21    12234555555555543 222211   3567777777776653  3556667777777777


Q ss_pred             CcccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccC
Q 042919          281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI  359 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  359 (428)
                      +|.+.+ .+...+..+++|+.|++++|.+..... ...+++|+.|++++|.+. ..+..+..+++|+.|++++|.++.. 
T Consensus       263 ~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-  339 (597)
T 3oja_B          263 YNELEK-IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-  339 (597)
T ss_dssp             SSCCCE-EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred             CCccCC-CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-
Confidence            777663 323335566777777777776665443 445777888888877776 3445566778888888888877633 


Q ss_pred             CcccCCCCCCcEEeCCCCcCCc
Q 042919          360 PPWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       360 ~~~~~~~~~L~~L~L~~~~~~~  381 (428)
                      +  +..+++|+.|++++|++.+
T Consensus       340 ~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          340 K--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             C--CCTTCCCSEEECCSSCEEH
T ss_pred             C--hhhcCCCCEEEeeCCCCCC
Confidence            2  5667788888888887654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4e-27  Score=213.82  Aligned_cols=242  Identities=22%  Similarity=0.278  Sum_probs=139.4

Q ss_pred             CCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEc
Q 042919           55 NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKL  134 (428)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  134 (428)
                      +++.++++++.++. +|..+  .++++.|+++++.++...+..+..+++|++|++++|.+.++. +..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEEC
Confidence            68889998888773 44333  268899999999888766667888999999999998887663 356778888888888


Q ss_pred             cCCccccccCCCCCCCcCCccEEEcCCCCCccchh-HhhhCCCccEEEccCCcCCCC-CchhhhhcCCCCCEEEecCCcc
Q 042919          135 SNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS-ILLQQLDLRFIDLSHNKLQGI-FPSWLLQNNTKLDTLYLLNNSL  212 (428)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~  212 (428)
                      +++.+...+..+.    .+|++|++++|.+..++. .+..+++|+.|++++|.+... .....+..+++|+.|++++|.+
T Consensus       108 s~n~l~~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCSBCCSSCC----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCCccChhhc----ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            8776654333322    247777777777755543 456666777777777665421 1111224455555555555544


Q ss_pred             CCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhh
Q 042919          213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF  292 (428)
Q Consensus       213 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  292 (428)
                      ..                        ++..+   .++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+...
T Consensus       184 ~~------------------------l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~  235 (330)
T 1xku_A          184 TT------------------------IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGS  235 (330)
T ss_dssp             CS------------------------CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTT
T ss_pred             cc------------------------CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeChhh
Confidence            32                        22211   245555555555555444445555555555555555544 222222


Q ss_pred             hcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccC
Q 042919          293 LSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFS  332 (428)
Q Consensus       293 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  332 (428)
                      +..+++|+.|++++|.+..... +..+++|++|++++|.++
T Consensus       236 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence            3344444444444444332211 333344444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.3e-27  Score=215.45  Aligned_cols=288  Identities=18%  Similarity=0.179  Sum_probs=165.6

Q ss_pred             CCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEc
Q 042919           55 NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKL  134 (428)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  134 (428)
                      +++.++++++.++ .+|..+  .++|+.|+++++.+....+..+.++++|++|++++|.+.++. +..+.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEEC
Confidence            6889999988887 444433  368999999999888666778889999999999999887653 356777788777777


Q ss_pred             cCCccccccCCCCCCCcCCccEEEcCCCCCccchh-HhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccC
Q 042919          135 SNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS-ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS  213 (428)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  213 (428)
                      ++|.+...+....    .+|++|++++|.+..++. .+..+++|+.|++++|.+....                      
T Consensus       110 ~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------  163 (332)
T 2ft3_A          110 SKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG----------------------  163 (332)
T ss_dssp             CSSCCCSCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG----------------------
T ss_pred             CCCcCCccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC----------------------
Confidence            7766543322221    235555555555544443 2444455555555555443100                      


Q ss_pred             CcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhh
Q 042919          214 GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFL  293 (428)
Q Consensus       214 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  293 (428)
                      ........+ +|+.|++++|.+. .++..+   .++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+
T Consensus       164 ~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~  237 (332)
T 2ft3_A          164 FEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSL  237 (332)
T ss_dssp             SCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGG
T ss_pred             CCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-cCChhHh
Confidence            011111222 5666666666655 344333   256777777777776665566777777777777777765 3333334


Q ss_pred             cCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCC------CC
Q 042919          294 SGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGN------LS  367 (428)
Q Consensus       294 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~------~~  367 (428)
                      ..+++|+.|++++|.+..                       .+..+..+++|+.|++++|.+++..+..+..      .+
T Consensus       238 ~~l~~L~~L~L~~N~l~~-----------------------lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  294 (332)
T 2ft3_A          238 SFLPTLRELHLDNNKLSR-----------------------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA  294 (332)
T ss_dssp             GGCTTCCEEECCSSCCCB-----------------------CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred             hCCCCCCEEECCCCcCee-----------------------cChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence            455555555555554442                       2223444455555555555554333333332      24


Q ss_pred             CCcEEeCCCCcCC--cCCCCcc-ccccCceEEccCCc
Q 042919          368 GLQFLDISENQLC--GSVPSSF-NLSSLRRLYMHMNA  401 (428)
Q Consensus       368 ~L~~L~L~~~~~~--~~~~~~~-~~~~L~~L~l~~~~  401 (428)
                      .|+.|++++|++.  +..+..+ .+++|+.+++++|+
T Consensus       295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            4566666666554  3333334 55666666666553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.4e-30  Score=255.78  Aligned_cols=412  Identities=14%  Similarity=0.099  Sum_probs=287.6

Q ss_pred             cccChHHHHHHhccc-ceE-EEeecchhcccCCcc------e------eeeecccccCCCCCcEEeccCCcCC-------
Q 042919            9 IKKPQELWHKFFQKG-SIT-YLSVEDSCRKTNGVP------L------TVFVNTGICELKNLVELDLSKNNLY-------   67 (428)
Q Consensus         9 ~~~~~~~~~~~~~~~-~~~-~l~~~~~c~~~~~~~------~------~~~~~~~~~~~~~L~~L~l~~~~~~-------   67 (428)
                      ..+|+++|..+|..- ..+ .......|+.|.++.      +      ...++..+.++++|++|+++++...       
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~   93 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP   93 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence            468999988887543 221 123344566664321      1      1122334567899999999875321       


Q ss_pred             ----C----CchHhhhcCCCCCEEEccCCccCcchhhhhcc-CC-CCcEEeCCCCcc-CCccccccccCCCCCcEEEccC
Q 042919           68 ----G----HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN-IK-SLEYLSLDDNNF-EGLFSFNSLKNHSKLQVFKLSN  136 (428)
Q Consensus        68 ----~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~  136 (428)
                          +    .++.....+++|++|+++++.+....+..+.. ++ +|++|++++|.- ..........++++|++|++++
T Consensus        94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~  173 (592)
T 3ogk_B           94 ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE  173 (592)
T ss_dssp             TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred             ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence                1    12223348999999999999887655665655 44 499999999862 2111122345899999999999


Q ss_pred             CccccccCC-----CCCCCcCCccEEEcCCCCCc-----cchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEE
Q 042919          137 SLVKIETEE-----FPGLPEYQLKALNLRNCSLQ-----ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLY  206 (428)
Q Consensus       137 ~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  206 (428)
                      |.+......     ....  ++|++|+++++.+.     .++..+..+++|+.|++++|.+.. .+ ..+..+++|+.|.
T Consensus       174 ~~~~~~~~~~l~~~~~~~--~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~  249 (592)
T 3ogk_B          174 SSFSEKDGKWLHELAQHN--TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFC  249 (592)
T ss_dssp             CEEECCCSHHHHHHHHHC--CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEE
T ss_pred             ccccCcchhHHHHHHhcC--CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhc
Confidence            976432211     1122  35999999999875     566677889999999999988774 33 4457899999999


Q ss_pred             ecCCccC----CcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEECcC
Q 042919          207 LLNNSLS----GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIP-SSMSEMKRLESLDLSS  281 (428)
Q Consensus       207 l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~  281 (428)
                      ++.....    ........+++|+.+.+++.... .++. +...+++|++|++++|.+.+... ..+..+++|++|++. 
T Consensus       250 l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-  326 (592)
T 3ogk_B          250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-  326 (592)
T ss_dssp             ECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-
T ss_pred             ccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-
Confidence            9864322    22334567789999999875332 3343 34448899999999998653322 346789999999999 


Q ss_pred             cccCCCCchhhhcCCCCCCEEeCCC-----------cccccccc---cCCCCCcceeecccCccCccchhhhhc-CCCCc
Q 042919          282 NNFSGELPRQFLSGCFSLSFLSLSD-----------NHLQGEVV---FPNSTNLCWLYLNNNHFSGKIQDGLSK-ATSLL  346 (428)
Q Consensus       282 ~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~  346 (428)
                      +.+.+.........+++|+.|++.+           +.+.....   ...+++|++|++..+.+++.....+.. +++|+
T Consensus       327 ~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~  406 (592)
T 3ogk_B          327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC  406 (592)
T ss_dssp             GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCC
T ss_pred             CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCc
Confidence            4443333344456789999999993           44443322   456899999999888888777777765 89999


Q ss_pred             EEEcc----CCccccc-----CCcccCCCCCCcEEeCCCCc--CCcCCCCcc--ccccCceEEccCCcCCc-cCCccccc
Q 042919          347 ELDLS----NNMLYGQ-----IPPWFGNLSGLQFLDISENQ--LCGSVPSSF--NLSSLRRLYMHMNAFNG-SIPGALRR  412 (428)
Q Consensus       347 ~L~l~----~~~i~~~-----~~~~~~~~~~L~~L~L~~~~--~~~~~~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~  412 (428)
                      +|++.    .+.+++.     ++..+.++++|++|++++|.  +++.....+  .+++|+.|++++|.+++ ..+..+..
T Consensus       407 ~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  486 (592)
T 3ogk_B          407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG  486 (592)
T ss_dssp             EEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred             EEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence            99996    5567643     23346678999999998764  555544444  58999999999999875 34556688


Q ss_pred             CCCCCEEECCCCccC
Q 042919          413 SLSLTVLDLRDNEFS  427 (428)
Q Consensus       413 ~~~L~~L~l~~~~~~  427 (428)
                      +++|++|++++|+++
T Consensus       487 ~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          487 CPNLQKLEMRGCCFS  501 (592)
T ss_dssp             CTTCCEEEEESCCCB
T ss_pred             CcccCeeeccCCCCc
Confidence            999999999999976

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=9.6e-28  Score=215.72  Aligned_cols=244  Identities=30%  Similarity=0.468  Sum_probs=157.7

Q ss_pred             CccEEEcCCCCCc---cchhHhhhCCCccEEEccC-CcCCCCCchhhhhcCCCCCEEEecCCccCC-cccCCCCCCCccE
Q 042919          153 QLKALNLRNCSLQ---ALPSILLQQLDLRFIDLSH-NKLQGIFPSWLLQNNTKLDTLYLLNNSLSG-NFQLPSSKHDLLR  227 (428)
Q Consensus       153 ~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~  227 (428)
                      +++.|+++++.+.   .+|..+..+++|+.|++++ +.+....+..+ ..+++|++|++++|.+.+ .......+++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            5999999999886   5888999999999999995 77776777665 578888888888888763 3334556677777


Q ss_pred             EecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCC-CCCEEECcCcccCCCCchhhhcCCCCCCEEeCCC
Q 042919          228 LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK-RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD  306 (428)
Q Consensus       228 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  306 (428)
                      |++++|.+.+..+..+.. +++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+.. +..+. |+.|++++
T Consensus       130 L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred             EeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence            777777776556655554 67777777777776655666666666 6777777777665444433 33443 66666666


Q ss_pred             cccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCC
Q 042919          307 NHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP  384 (428)
Q Consensus       307 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  384 (428)
                      |.+....+  +..+++|+.|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++..+
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            66553322  45555666666666655533332 4455556666666655555555555555556666666655555444


Q ss_pred             CccccccCceEEccCCc
Q 042919          385 SSFNLSSLRRLYMHMNA  401 (428)
Q Consensus       385 ~~~~~~~L~~L~l~~~~  401 (428)
                      ....+++|+.+++++|+
T Consensus       286 ~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          286 QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSTTGGGSCGGGTCSSS
T ss_pred             CCccccccChHHhcCCC
Confidence            44445555555555555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=6.2e-27  Score=210.45  Aligned_cols=248  Identities=25%  Similarity=0.397  Sum_probs=205.1

Q ss_pred             CCccEEEccCCcCCC--CCchhhhhcCCCCCEEEecC-CccCC-cccCCCCCCCccEEecCCCccccCCCchhhhcCCCC
Q 042919          175 LDLRFIDLSHNKLQG--IFPSWLLQNNTKLDTLYLLN-NSLSG-NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPEL  250 (428)
Q Consensus       175 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  250 (428)
                      .+++.|+++++.+..  ..+..+ ..+++|++|++++ +.+.+ .+.....+++|++|++++|.+.+..+..+.. +++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTC
T ss_pred             ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCC
Confidence            478999999999886  566655 6899999999995 76654 3445568889999999999988777777766 8999


Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCC-CCCEEeCCCcccccccc--cCCCCCcceeecc
Q 042919          251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF-SLSFLSLSDNHLQGEVV--FPNSTNLCWLYLN  327 (428)
Q Consensus       251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~  327 (428)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+.++.. +..++ .|+.|++++|.+....+  +..++ |++|+++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            99999999988778888999999999999999987666655 45665 89999999998874433  55555 9999999


Q ss_pred             cCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccC
Q 042919          328 NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSI  406 (428)
Q Consensus       328 ~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~  406 (428)
                      +|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..+..+ .+++|+.|++++|++++..
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            9999888888888999999999999998855554 7888999999999999988888777 8899999999999998888


Q ss_pred             CcccccCCCCCEEECCCCc-cCC
Q 042919          407 PGALRRSLSLTVLDLRDNE-FSG  428 (428)
Q Consensus       407 ~~~~~~~~~L~~L~l~~~~-~~~  428 (428)
                      |.. +.+++|+.+++++|+ +.|
T Consensus       285 p~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          285 PQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCS-TTGGGSCGGGTCSSSEEES
T ss_pred             CCC-ccccccChHHhcCCCCccC
Confidence            876 788999999999997 443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.5e-26  Score=206.36  Aligned_cols=243  Identities=25%  Similarity=0.284  Sum_probs=120.0

Q ss_pred             cEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc---ccCCCCCCCccEEecC
Q 042919          155 KALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN---FQLPSSKHDLLRLDIS  231 (428)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~  231 (428)
                      +.++.+++++..+|..+.  ++|++|++++|.+. ..+..++..+++|++|++++|.+...   ......+++|++|+++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            345555555555655332  36666666666665 23333334556666666665554421   0111123444455554


Q ss_pred             CCccccCCCchhhhcCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccc
Q 042919          232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIP-SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ  310 (428)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (428)
                      +|.+. .++..+.. +++|++|++++|.+....+ ..+..+++|++|++++|.+.+ .....+..+++|+.|++++|.+.
T Consensus        87 ~n~i~-~l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           87 FNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             SCSEE-EEEEEEET-CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCccc-cChhhcCC-CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCccc
Confidence            44443 22333322 5566666666665543322 345555666666666655542 22233444555555555555554


Q ss_pred             c---ccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919          311 G---EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF  387 (428)
Q Consensus       311 ~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  387 (428)
                      +   ...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            3   1124445555555555555554444445555555555555555544334444555555555555555554444444


Q ss_pred             -cc-ccCceEEccCCcCC
Q 042919          388 -NL-SSLRRLYMHMNAFN  403 (428)
Q Consensus       388 -~~-~~L~~L~l~~~~~~  403 (428)
                       .+ ++|+.|++++|++.
T Consensus       244 ~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCCTTCCEEECTTCCEE
T ss_pred             HhhhccCCEEEccCCCee
Confidence             33 25555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=4.6e-30  Score=252.28  Aligned_cols=374  Identities=16%  Similarity=0.147  Sum_probs=208.4

Q ss_pred             cCCCCCcEEeccCCcCCCCchHhhh-cCCCCCEEEccCC-ccCcc-hhhhhccCCCCcEEeCCCCccCCccc---ccccc
Q 042919           51 CELKNLVELDLSKNNLYGHLSPCLS-NLTHIKVLDLSSN-QLTGN-LQSVIANIKSLEYLSLDDNNFEGLFS---FNSLK  124 (428)
Q Consensus        51 ~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~  124 (428)
                      ..+++|++|+++++.+++..+..+. .+++|++|++.+| .+... .+..+.++++|++|++++|.+.+...   .....
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            4678888888888887766565564 6888888888888 44432 34444578888888888887665422   12234


Q ss_pred             CCCCCcEEEccCCccccccCCCCCC--CcCCccEEEcCCC-CCccchhHhhhCCCccEEEccCCcCCC------CCchhh
Q 042919          125 NHSKLQVFKLSNSLVKIETEEFPGL--PEYQLKALNLRNC-SLQALPSILLQQLDLRFIDLSHNKLQG------IFPSWL  195 (428)
Q Consensus       125 ~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~------~~~~~~  195 (428)
                      .+++|++|+++++........+...  ..++|++|++++| .+..++..+..+++|+.|+++.+....      ..+. .
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-A  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-H
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-H
Confidence            6778888888876511111111100  1235888888887 445577777888888888866543210      0111 1


Q ss_pred             hhcCCCCCEE-EecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCC-CCccccCCCC
Q 042919          196 LQNNTKLDTL-YLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGR-IPSSMSEMKR  273 (428)
Q Consensus       196 ~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~  273 (428)
                      +..+++|+.+ .+..............+++|++|++++|.+++.....+...+++|++|++.+| +.+. .......+++
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence            2455666665 22222211111122245677777777776543333333334677777777766 2211 1112224667


Q ss_pred             CCEEECcC---------cccCCCCchhhhcCCCCCCEEeCCCcccccccc--c-CCCCCcceeecc--c----CccCcc-
Q 042919          274 LESLDLSS---------NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--F-PNSTNLCWLYLN--N----NHFSGK-  334 (428)
Q Consensus       274 L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~-~~~~~L~~L~l~--~----~~~~~~-  334 (428)
                      |++|++.+         +.+++.........+++|+.|.+.++.+.+...  + ..+++|++|+++  +    +.+++. 
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            77776633         222211112222346677777666665554332  2 246677777776  2    233311 


Q ss_pred             ----chhhhhcCCCCcEEEccCCcccccCCcccCC-CCCCcEEeCCCCcCCcCCCCcc--ccccCceEEccCCcCCccCC
Q 042919          335 ----IQDGLSKATSLLELDLSNNMLYGQIPPWFGN-LSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIP  407 (428)
Q Consensus       335 ----~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~  407 (428)
                          ....+..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++.....+  .+++|+.|++++|+++....
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~  498 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL  498 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred             hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence                112245567777777765 444333333433 6677777777777655444333  46777777777777643322


Q ss_pred             -cccccCCCCCEEECCCCccC
Q 042919          408 -GALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       408 -~~~~~~~~L~~L~l~~~~~~  427 (428)
                       ..+..+++|+.|++++|+++
T Consensus       499 ~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          499 LANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHhCCCCCEEeeeCCCCC
Confidence             23345677777777777653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=5.5e-26  Score=208.25  Aligned_cols=270  Identities=23%  Similarity=0.192  Sum_probs=195.6

Q ss_pred             ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCC
Q 042919          154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISH  232 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~  232 (428)
                      ....+.++++++.+|..+.  ++|++|++++|.+....+.. +..+++|+.|++++|.+.... .....+++|++|++++
T Consensus        33 ~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             TSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            3345666666666665443  36777777777766433323 356777777777777766543 2355677888888888


Q ss_pred             CccccCCCchhhhcCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc
Q 042919          233 NKFSCQLPGNMGKILPELLSLNLSENGFEGRIP-SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG  311 (428)
Q Consensus       233 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  311 (428)
                      |.+. .++......+++|++|++++|.+..... ..+..+++|++|++++|...+.++...+..+++|+.|++++|.+..
T Consensus       110 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            8877 4555544448899999999998875444 4788899999999998853335555567788899999999988876


Q ss_pred             cc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccC---CCCCCcEEeCCCCcCCcC----
Q 042919          312 EV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFG---NLSGLQFLDISENQLCGS----  382 (428)
Q Consensus       312 ~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~---~~~~L~~L~L~~~~~~~~----  382 (428)
                      ..  .+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+.   ..+.++.++++++.+.+.    
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence            53  378889999999999988765555566789999999999998865443332   356788888888877653    


Q ss_pred             CCCcc-ccccCceEEccCCcCCccCCcc-cccCCCCCEEECCCCccCC
Q 042919          383 VPSSF-NLSSLRRLYMHMNAFNGSIPGA-LRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       383 ~~~~~-~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~  428 (428)
                      .+..+ .+++|+.|++++|+++ .+|.. |+.+++|+.|++++|+++|
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            23333 6889999999999998 45544 6889999999999999876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.3e-25  Score=209.09  Aligned_cols=244  Identities=22%  Similarity=0.225  Sum_probs=161.3

Q ss_pred             EEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCCCc
Q 042919          156 ALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNK  234 (428)
Q Consensus       156 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~  234 (428)
                      .++..+.++..+|..+.  ++++.|++++|.+....+..+ ..+++|+.|++++|.+.... .....+++|++|++++|.
T Consensus        58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            34444444444443222  355555555555553333322 45555555555555554432 233455666666666666


Q ss_pred             cccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc
Q 042919          235 FSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV  314 (428)
Q Consensus       235 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  314 (428)
                      +. .++...+..+++|++|++++|.+....+..+..+++|++|++++|...+.++...+..+++|+.|++++|.+.....
T Consensus       135 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~  213 (452)
T 3zyi_A          135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN  213 (452)
T ss_dssp             CS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred             CC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence            65 33433333467778888877777755556677778888888877554446666667777888888888887777666


Q ss_pred             cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCc
Q 042919          315 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLR  393 (428)
Q Consensus       315 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~  393 (428)
                      +..+++|++|++++|.+++..+..|..+++|+.|++++|.++...+..+.++++|+.|+|++|++++..+..+ .+++|+
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            7777888888888888877777778888888888888888876777777888888888888888876666665 677888


Q ss_pred             eEEccCCcCC
Q 042919          394 RLYMHMNAFN  403 (428)
Q Consensus       394 ~L~l~~~~~~  403 (428)
                      .|++++|++.
T Consensus       294 ~L~L~~Np~~  303 (452)
T 3zyi_A          294 ELHLHHNPWN  303 (452)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEccCCCcC
Confidence            8888888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3.7e-25  Score=208.85  Aligned_cols=244  Identities=21%  Similarity=0.218  Sum_probs=152.7

Q ss_pred             EEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCCCc
Q 042919          156 ALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNK  234 (428)
Q Consensus       156 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~  234 (428)
                      .++..+.++..+|..+.  ++++.|++++|.+....+..+ ..+++|++|++++|.+.... .....+++|++|++++|.
T Consensus        47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            34444444444443322  345555555555443322222 34555555555555444322 223345555666666655


Q ss_pred             cccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc
Q 042919          235 FSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV  314 (428)
Q Consensus       235 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  314 (428)
                      +. .++...+..+++|++|++++|.+....+..+..+++|++|++++|...+.++...+..+++|+.|++++|.+.....
T Consensus       124 l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~  202 (440)
T 3zyj_A          124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN  202 (440)
T ss_dssp             CS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred             CC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence            55 33333333367777777777777655555677777777777777554445555566677777777777777776666


Q ss_pred             cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCc
Q 042919          315 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLR  393 (428)
Q Consensus       315 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~  393 (428)
                      +..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|.++++|+.|+|++|++++..+..+ .+++|+
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence            7777777777777777776666777777777777777777776667777777777777777777776666655 677777


Q ss_pred             eEEccCCcCC
Q 042919          394 RLYMHMNAFN  403 (428)
Q Consensus       394 ~L~l~~~~~~  403 (428)
                      .|++++|++.
T Consensus       283 ~L~L~~Np~~  292 (440)
T 3zyj_A          283 RIHLHHNPWN  292 (440)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEcCCCCcc
Confidence            7777777764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=4.4e-25  Score=199.48  Aligned_cols=201  Identities=21%  Similarity=0.294  Sum_probs=145.8

Q ss_pred             CCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhh--------h
Q 042919          222 KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF--------L  293 (428)
Q Consensus       222 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--------~  293 (428)
                      +++|++|++++|.+. .++..+.. +++|++|++++|.+. ..|..+..+++|++|++++|...+.++...        +
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             CCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            344444444444444 44444433 566666666666665 445556666666666666655544444332        2


Q ss_pred             cCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEE
Q 042919          294 SGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFL  372 (428)
Q Consensus       294 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  372 (428)
                      ..+++|+.|++++|.+..... +..+++|++|++++|.+.+ .+..+..+++|+.|++++|.+.+.+|..+.++++|+.|
T Consensus       180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  258 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL  258 (328)
T ss_dssp             EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred             ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence            347777777777777764432 6777888888888888875 44468888999999999988887888889999999999


Q ss_pred             eCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCcc
Q 042919          373 DISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       373 ~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  426 (428)
                      ++++|++.+..+..+ .+++|+.|++++|++.+.+|..++.+++|+.+++..+.+
T Consensus       259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            999998888888777 889999999999999889999999999999999887754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.6e-25  Score=198.82  Aligned_cols=266  Identities=21%  Similarity=0.204  Sum_probs=189.3

Q ss_pred             cEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc-ccCCCCCCCccEEecCCC
Q 042919          155 KALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN-FQLPSSKHDLLRLDISHN  233 (428)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~  233 (428)
                      ++++.+++++..+|..+  .++|+.|+++++.+....+.. +..+++|++|++++|.+... ......+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHH-cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            34555555555555432  346666666666665433322 24566666666666665543 234456677777777777


Q ss_pred             c-cccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccc
Q 042919          234 K-FSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE  312 (428)
Q Consensus       234 ~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  312 (428)
                      . +....+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+...
T Consensus        91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccccc
Confidence            6 4422233343 3788888888888888777777888888999999988887 56655577888899999988888765


Q ss_pred             cc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccc
Q 042919          313 VV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLS  390 (428)
Q Consensus       313 ~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~  390 (428)
                      ..  +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++...........
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~  248 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA  248 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence            54  7788999999999999887778888899999999999999986666778999999999999998875444322334


Q ss_pred             cCceEEccCCcCCccCCccccc--CCCCCEEECCCCc
Q 042919          391 SLRRLYMHMNAFNGSIPGALRR--SLSLTVLDLRDNE  425 (428)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~  425 (428)
                      .++.+....+.+....|..+..  +..++..++.||+
T Consensus       249 ~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             HHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             HHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence            5666677777777777877654  5677777788774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=2.6e-25  Score=199.68  Aligned_cols=261  Identities=21%  Similarity=0.198  Sum_probs=197.5

Q ss_pred             CccEEEcCCCCCccchhH-hhhCCCccEEEccCCcCCCCC--chhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEe
Q 042919          153 QLKALNLRNCSLQALPSI-LLQQLDLRFIDLSHNKLQGIF--PSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLD  229 (428)
Q Consensus       153 ~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  229 (428)
                      ++++|++++|.+..+|.. +..+++|+.|++++|.+....  +..+ ..+++|++|++++|.+.........+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            477777777777666654 467777888888777766332  2333 357778888888877766544556778888888


Q ss_pred             cCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccc
Q 042919          230 ISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL  309 (428)
Q Consensus       230 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  309 (428)
                      +++|.+...........+++|++|++++|.+....+..+..+++|++|++++|.+.+......+..+++|+.|++++|.+
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            88888764333233334889999999999888777778888999999999999887433334467889999999999998


Q ss_pred             cccc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCC-CCcEEeCCCCcCCcCCCCc
Q 042919          310 QGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLS-GLQFLDISENQLCGSVPSS  386 (428)
Q Consensus       310 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~  386 (428)
                      ....  .+..+++|++|++++|.+++.....+..+++|+.|++++|.+++..+..+..++ +|++|++++|+++......
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence            8763  378899999999999999887777888999999999999999988888899885 9999999999987643322


Q ss_pred             -c--ccccCceEEccCCcCCccCCcccccCC
Q 042919          387 -F--NLSSLRRLYMHMNAFNGSIPGALRRSL  414 (428)
Q Consensus       387 -~--~~~~L~~L~l~~~~~~~~~~~~~~~~~  414 (428)
                       +  .+...+.+.+..+.+....|..+++.+
T Consensus       268 ~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          268 SFLQWIKDQRQLLVEVERMECATPSDKQGMP  298 (306)
T ss_dssp             HHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred             HHHHHHHhhhhhhccccccccCCchhhCCce
Confidence             1  345666677777777767777766543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.2e-23  Score=204.19  Aligned_cols=258  Identities=23%  Similarity=0.270  Sum_probs=133.9

Q ss_pred             CCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEE
Q 042919          102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFID  181 (428)
Q Consensus       102 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  181 (428)
                      .+++.|+++++.++.+.  ..+.  ++|++|++++|.+...+.     ..++|++|++++|.+..+|.   .+++|+.|+
T Consensus        40 ~~l~~L~ls~n~L~~lp--~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLP--DCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCSCCC--SCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCcCccC--hhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEE
Confidence            46899999999888652  2222  677777777666543322     12246666666666666655   455666666


Q ss_pred             ccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCC
Q 042919          182 LSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFE  261 (428)
Q Consensus       182 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  261 (428)
                      +++|.+.....     .+++|+.|++++|.+.....   .+++|+.|++++|.+. .++.    .+++|+.|++++|.+.
T Consensus       108 Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          108 IFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             ECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred             CcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCC
Confidence            66666553221     34556666666665544222   2355555555555544 2221    1344555555555554


Q ss_pred             CCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhc
Q 042919          262 GRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSK  341 (428)
Q Consensus       262 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  341 (428)
                      . .+   ..+++|++|++++|.+. .++.                          .+++|+.|++++|.++... .   .
T Consensus       175 ~-l~---~~~~~L~~L~Ls~N~l~-~l~~--------------------------~~~~L~~L~L~~N~l~~l~-~---~  219 (622)
T 3g06_A          175 S-LP---MLPSGLQELSVSDNQLA-SLPT--------------------------LPSELYKLWAYNNRLTSLP-A---L  219 (622)
T ss_dssp             C-CC---CCCTTCCEEECCSSCCS-CCCC--------------------------CCTTCCEEECCSSCCSSCC-C---C
T ss_pred             C-Cc---ccCCCCcEEECCCCCCC-CCCC--------------------------ccchhhEEECcCCcccccC-C---C
Confidence            2 22   23445555555555444 2221                          1244455555554444221 1   1


Q ss_pred             CCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEEC
Q 042919          342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDL  421 (428)
Q Consensus       342 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  421 (428)
                      +++|+.|++++|.+++ +|   ..+++|+.|++++|+++....   .+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus       220 ~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            3455555555555552 33   233555555555555553222   3455555555555555 44555555555555555


Q ss_pred             CCCccC
Q 042919          422 RDNEFS  427 (428)
Q Consensus       422 ~~~~~~  427 (428)
                      ++|+++
T Consensus       292 ~~N~l~  297 (622)
T 3g06_A          292 EGNPLS  297 (622)
T ss_dssp             CSCCCC
T ss_pred             cCCCCC
Confidence            555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.6e-24  Score=192.34  Aligned_cols=203  Identities=25%  Similarity=0.266  Sum_probs=122.2

Q ss_pred             CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcc-cCCCCchhhhcCCCCCCE
Q 042919          223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN-FSGELPRQFLSGCFSLSF  301 (428)
Q Consensus       223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~  301 (428)
                      +++++|+++++.+....+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|. +. .++...+..+++|++
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHT  109 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCE
T ss_pred             CCceEEEeeCCcCCccCHHHcc-cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCE
Confidence            3455555555555422222232 25566666666666654445556666666666666665 33 443344555666666


Q ss_pred             EeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919          302 LSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL  379 (428)
Q Consensus       302 L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~  379 (428)
                      |++++|.+.....  +..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            6666666554433  55666666666666666655555566666777777777766644455566666777777777766


Q ss_pred             CcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          380 CGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       380 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      ++..+..+ .+++|+.|++++|.+.+..+..+..+++|+.|++++|+++
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            66655555 5667777777777766555555666777777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=199.69  Aligned_cols=278  Identities=23%  Similarity=0.227  Sum_probs=181.6

Q ss_pred             CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919           52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV  131 (428)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  131 (428)
                      .|+.....+.+++.++ .+|..+.  ++|++|+++++.++...+..+..+++|++|++++|.+.++.+ ..+.++++   
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~---  101 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGS---  101 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTT---
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH-hhcCCCCC---
Confidence            4455555677777776 3343332  478888888887775555577778888888888877664421 22333333   


Q ss_pred             EEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhH-hhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCC
Q 042919          132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN  210 (428)
Q Consensus       132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  210 (428)
                                            |++|++++|.+..++.. +..+++|++|++++|.+........+..+++|++|++++|
T Consensus       102 ----------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          102 ----------------------LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             ----------------------CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             ----------------------CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence                                  55566666666566554 6677788888888887764332123345666666666655


Q ss_pred             ccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919          211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR  290 (428)
Q Consensus       211 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  290 (428)
                      ..                      +. .++......+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++.
T Consensus       160 ~~----------------------~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~  215 (353)
T 2z80_A          160 DT----------------------FT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE  215 (353)
T ss_dssp             SS----------------------CC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHH
T ss_pred             cc----------------------cc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchh
Confidence            31                      11 222222222667777777777776666677777778888888877765 5555


Q ss_pred             hhhcCCCCCCEEeCCCcccccccc-----cCCCCCcceeecccCccCcc----chhhhhcCCCCcEEEccCCcccccCCc
Q 042919          291 QFLSGCFSLSFLSLSDNHLQGEVV-----FPNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLELDLSNNMLYGQIPP  361 (428)
Q Consensus       291 ~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~~~~  361 (428)
                      ..+..+++|+.|++++|.+.....     ......++.+++.++.+.+.    .+..+..+++|+.|++++|.++ .+|.
T Consensus       216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~  294 (353)
T 2z80_A          216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPD  294 (353)
T ss_dssp             HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCT
T ss_pred             hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCH
Confidence            555667788888888777765332     23456777888887776642    4556788899999999999998 4454


Q ss_pred             c-cCCCCCCcEEeCCCCcCCcCC
Q 042919          362 W-FGNLSGLQFLDISENQLCGSV  383 (428)
Q Consensus       362 ~-~~~~~~L~~L~L~~~~~~~~~  383 (428)
                      . +.++++|++|++++|++.+..
T Consensus       295 ~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          295 GIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HHHhcCCCCCEEEeeCCCccCcC
Confidence            4 588899999999999887543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=4.1e-24  Score=201.66  Aligned_cols=244  Identities=22%  Similarity=0.178  Sum_probs=206.8

Q ss_pred             CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEE
Q 042919          176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLN  254 (428)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  254 (428)
                      ..+.++..+..+. .+|..+   .++++.|++++|.+.... ..+..+++|++|++++|.+.. ++...+..+++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEE
Confidence            3567777777776 444433   478999999999988754 456789999999999999984 4434444589999999


Q ss_pred             ccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccc---cccCCCCCcceeecccCcc
Q 042919          255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE---VVFPNSTNLCWLYLNNNHF  331 (428)
Q Consensus       255 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~  331 (428)
                      +++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.....   ..+..+++|++|++++|.+
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            9999999777778999999999999999987 67766788999999999998654332   2378899999999999998


Q ss_pred             CccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCccc
Q 042919          332 SGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGAL  410 (428)
Q Consensus       332 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~  410 (428)
                      +...  .+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..+..+ .+++|+.|++++|+++...+..|
T Consensus       198 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          198 REIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             SSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence            8543  47889999999999999998889999999999999999999998888888 89999999999999997778888


Q ss_pred             ccCCCCCEEECCCCccC
Q 042919          411 RRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       411 ~~~~~L~~L~l~~~~~~  427 (428)
                      ..+++|+.|++++||+.
T Consensus       276 ~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          276 TPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             SSCTTCCEEECCSSCEE
T ss_pred             ccccCCCEEEcCCCCcc
Confidence            99999999999999974

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.8e-27  Score=233.81  Aligned_cols=415  Identities=17%  Similarity=0.113  Sum_probs=276.5

Q ss_pred             ccccChHHHHHHhcccc-eE-EEeecchhcccCCcce---ee---------eecccccCCCCCcEEeccCCcCCC---C-
Q 042919            8 IIKKPQELWHKFFQKGS-IT-YLSVEDSCRKTNGVPL---TV---------FVNTGICELKNLVELDLSKNNLYG---H-   69 (428)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-~~-~l~~~~~c~~~~~~~~---~~---------~~~~~~~~~~~L~~L~l~~~~~~~---~-   69 (428)
                      ...+|++++..+|..-. .+ .......|+.|.++..   ..         .....+.++++|++|+++++....   . 
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~   85 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLV   85 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCS
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccc
Confidence            34679998888775433 22 2344456766654310   00         011235578999999999875211   1 


Q ss_pred             -----------chHhhhcCCCCCEEEccCCccCcchhhhhc-cCCCCcEEeCCCC-ccCCccccccccCCCCCcEEEccC
Q 042919           70 -----------LSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-NIKSLEYLSLDDN-NFEGLFSFNSLKNHSKLQVFKLSN  136 (428)
Q Consensus        70 -----------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~  136 (428)
                                 +......+++|++|+++++.+....+..+. .+++|++|++++| .+.+.........+++|++|++++
T Consensus        86 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~  165 (594)
T 2p1m_B           86 PDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE  165 (594)
T ss_dssp             CTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTT
T ss_pred             cccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcC
Confidence                       123345789999999999988866666665 7999999999999 444422234455899999999999


Q ss_pred             CccccccC-CCCCC--CcCCccEEEcCCCC--C--ccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecC
Q 042919          137 SLVKIETE-EFPGL--PEYQLKALNLRNCS--L--QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN  209 (428)
Q Consensus       137 ~~~~~~~~-~~~~~--~~~~L~~L~l~~~~--~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  209 (428)
                      |.+..... .+...  ..++|++|++++|.  +  ..++.....+++|+.|++++|..... ...++..+++|+.|.+..
T Consensus       166 ~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             CEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSB
T ss_pred             CccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEccccc
Confidence            88643221 11111  23469999999986  3  33455556789999999999842222 334457899999999876


Q ss_pred             Ccc-------CCcccCCCCCCCccEE-ecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCC-CccccCCCCCCEEECc
Q 042919          210 NSL-------SGNFQLPSSKHDLLRL-DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRI-PSSMSEMKRLESLDLS  280 (428)
Q Consensus       210 ~~~-------~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~  280 (428)
                      +..       .........+++|+.+ .+..... ..++ .+...+++|++|++++|.+.+.. ...+..+++|++|++.
T Consensus       245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~  322 (594)
T 2p1m_B          245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL  322 (594)
T ss_dssp             CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             ccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence            642       1122233567888888 3433222 1222 23334799999999999865322 2335689999999999


Q ss_pred             CcccCCCCchhhhcCCCCCCEEeCCC---------cccccccc---cCCCCCcceeecccCccCccchhhhh-cCCCCcE
Q 042919          281 SNNFSGELPRQFLSGCFSLSFLSLSD---------NHLQGEVV---FPNSTNLCWLYLNNNHFSGKIQDGLS-KATSLLE  347 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~  347 (428)
                      +| +.+.........+++|+.|++.+         +.+.+...   ...+++|++|.+..+.+++.....+. .+++|+.
T Consensus       323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~  401 (594)
T 2p1m_B          323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR  401 (594)
T ss_dssp             GG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred             Cc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence            88 43222233344689999999943         33433222   23589999999988888876666665 5899999


Q ss_pred             EEcc--C----Cccccc-----CCcccCCCCCCcEEeCCCCcCCcCCCCcc--ccccCceEEccCCcCCccCCccc-ccC
Q 042919          348 LDLS--N----NMLYGQ-----IPPWFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIPGAL-RRS  413 (428)
Q Consensus       348 L~l~--~----~~i~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-~~~  413 (428)
                      |+++  +    +.+++.     ++..+..+++|+.|++++ .+++.....+  .+++|+.|++++|.+++.....+ ..+
T Consensus       402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  480 (594)
T 2p1m_B          402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC  480 (594)
T ss_dssp             EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred             eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence            9999  3    455522     122366789999999987 6665555444  48999999999999875544444 679


Q ss_pred             CCCCEEECCCCccC
Q 042919          414 LSLTVLDLRDNEFS  427 (428)
Q Consensus       414 ~~L~~L~l~~~~~~  427 (428)
                      ++|+.|++++|+++
T Consensus       481 ~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          481 DSLRKLEIRDCPFG  494 (594)
T ss_dssp             TTCCEEEEESCSCC
T ss_pred             CCcCEEECcCCCCc
Confidence            99999999999985

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=4e-24  Score=202.42  Aligned_cols=244  Identities=21%  Similarity=0.201  Sum_probs=206.9

Q ss_pred             CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc-ccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEE
Q 042919          176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN-FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLN  254 (428)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  254 (428)
                      ..+.++..+..++ .+|..+   .++++.|++++|.+... ......+++|++|++++|.+....+..+. .+++|++|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN-GLASLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEE
T ss_pred             CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc-CcccCCEEE
Confidence            3567777777766 344332   47899999999998875 34567899999999999999854444454 489999999


Q ss_pred             ccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc---ccCCCCCcceeecccCcc
Q 042919          255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHF  331 (428)
Q Consensus       255 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~  331 (428)
                      +++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|......   .+..+++|++|++++|.+
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            9999998777777999999999999999987 677777889999999999985543322   378899999999999999


Q ss_pred             CccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCccc
Q 042919          332 SGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGAL  410 (428)
Q Consensus       332 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~  410 (428)
                      .+.  ..+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..+..+ .+++|+.|++++|+++...+..+
T Consensus       209 ~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          209 KDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             SSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             ccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            854  357889999999999999998889999999999999999999998888878 89999999999999997777888


Q ss_pred             ccCCCCCEEECCCCccC
Q 042919          411 RRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       411 ~~~~~L~~L~l~~~~~~  427 (428)
                      ..+++|+.|++++||+.
T Consensus       287 ~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          287 TPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCTTCCEEECCSSCEE
T ss_pred             ccccCCCEEEccCCCcC
Confidence            99999999999999874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=6.6e-24  Score=191.79  Aligned_cols=230  Identities=20%  Similarity=0.165  Sum_probs=129.6

Q ss_pred             ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCC
Q 042919          154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN  233 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (428)
                      ++.|+++++.+..+|..+..+++|+.|++++|.+. .++..+ ..+++|++|++++|.+...+.....+++|++|++++|
T Consensus        83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred             eeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence            55555555555555555555666666666666555 333333 3455555555555544433222333334444444443


Q ss_pred             ccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc
Q 042919          234 KFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV  313 (428)
Q Consensus       234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  313 (428)
                      ...+.++..+..       .         .....+..+++|++|++++|.+. .++.. +..+++|+.|++++|.+....
T Consensus       161 ~~~~~~p~~~~~-------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~~l~  222 (328)
T 4fcg_A          161 PELTELPEPLAS-------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSALG  222 (328)
T ss_dssp             TTCCCCCSCSEE-------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCCCCC
T ss_pred             CCccccChhHhh-------c---------cchhhhccCCCCCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCCcCc
Confidence            333233322211       0         00011223555666666655554 44433 445556666666665555433


Q ss_pred             c-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-cccc
Q 042919          314 V-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSS  391 (428)
Q Consensus       314 ~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~  391 (428)
                      . +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.++++|+.|+|++|++.+..|..+ .+++
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence            2 5556667777777766666666667777777777777777666777777777777777777777777777666 7777


Q ss_pred             CceEEccCCcCC
Q 042919          392 LRRLYMHMNAFN  403 (428)
Q Consensus       392 L~~L~l~~~~~~  403 (428)
                      |+.+++..+.+.
T Consensus       303 L~~l~l~~~~~~  314 (328)
T 4fcg_A          303 NCIILVPPHLQA  314 (328)
T ss_dssp             TCEEECCGGGSC
T ss_pred             ceEEeCCHHHHH
Confidence            777777766554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=6.8e-25  Score=197.21  Aligned_cols=248  Identities=22%  Similarity=0.188  Sum_probs=160.7

Q ss_pred             ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCC-CCchhhh------hcCCCCCEEEecCCccCCc-ccCC--CCCC
Q 042919          154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQG-IFPSWLL------QNNTKLDTLYLLNNSLSGN-FQLP--SSKH  223 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~------~~~~~L~~L~l~~~~~~~~-~~~~--~~~~  223 (428)
                      |+.+++++|.+ .+|..+...  |+.|+++++.+.. ..+..+.      ..+++|++|++++|.+.+. ....  ..++
T Consensus        45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  121 (312)
T 1wwl_A           45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP  121 (312)
T ss_dssp             CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred             ceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence            66666666666 666655544  7777777776632 2222221      1467777777777766542 2221  4556


Q ss_pred             CccEEecCCCccccCCCchhhhc----CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCC
Q 042919          224 DLLRLDISHNKFSCQLPGNMGKI----LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSL  299 (428)
Q Consensus       224 ~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  299 (428)
                      +|++|++++|.+.+. +..+...    +++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..        
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------  192 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI--------  192 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH--------
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH--------
Confidence            666666666666533 4444331    156666666666666555556666666666666666543221100        


Q ss_pred             CEEeCCCcccccccccCCCCCcceeecccCccCc---cchhhhhcCCCCcEEEccCCcccccCC-cccCCCCCCcEEeCC
Q 042919          300 SFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG---KIQDGLSKATSLLELDLSNNMLYGQIP-PWFGNLSGLQFLDIS  375 (428)
Q Consensus       300 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~  375 (428)
                                 ....+..+++|++|++++|.++.   .....+..+++|+.|++++|.+++..| ..+..+++|+.|+++
T Consensus       193 -----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls  261 (312)
T 1wwl_A          193 -----------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS  261 (312)
T ss_dssp             -----------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred             -----------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence                       00112556677777777777663   223445678899999999999986654 456678899999999


Q ss_pred             CCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          376 ENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       376 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      +|+++ ..+..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++|
T Consensus       262 ~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          262 FTGLK-QVPKGLP-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TSCCS-SCCSSCC-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCccC-hhhhhcc-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            99998 4444444 8999999999999855 66 8899999999999999986

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=6.2e-23  Score=180.46  Aligned_cols=198  Identities=25%  Similarity=0.329  Sum_probs=118.0

Q ss_pred             ccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeC
Q 042919          225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL  304 (428)
Q Consensus       225 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  304 (428)
                      .+.++++++.++ .+|..+   .+++++|++++|.+....+..+.++++|++|++++|.+. .++...+..+++|++|++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred             CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence            445555555544 344332   245666666666665444445666666666666666655 454444555666666666


Q ss_pred             CCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcC
Q 042919          305 SDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGS  382 (428)
Q Consensus       305 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~  382 (428)
                      ++|.+.....  +..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            6666554432  45566666666666666655555566666666666666666644444566666666666666666655


Q ss_pred             CCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          383 VPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       383 ~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      .+..+ .+++|+.|++++|++....+..+..+++|+.|++++||++
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            55544 5666666666666666444555666666666666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=2.1e-22  Score=195.52  Aligned_cols=265  Identities=22%  Similarity=0.242  Sum_probs=213.8

Q ss_pred             CCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEE
Q 042919           78 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKAL  157 (428)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  157 (428)
                      .+++.|+++++.++ .+|..+.  ++|++|++++|.+..+..     .+++|++|++++|.+...+.     ..++|++|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV-----LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC-----CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC-----CCCCCCEE
Confidence            46999999999988 5565443  899999999999987622     67999999999998764443     23469999


Q ss_pred             EcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCcccc
Q 042919          158 NLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSC  237 (428)
Q Consensus       158 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  237 (428)
                      ++++|.+..+|.   .+++|+.|++++|.+.. ++.    .+++|+.|++++|.+....   ..+++|+.|++++|.+. 
T Consensus       107 ~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~----~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~-  174 (622)
T 3g06_A          107 SIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPV----LPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLT-  174 (622)
T ss_dssp             EECSCCCCCCCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-
T ss_pred             ECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CCC----CCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCC-
Confidence            999999999887   56799999999999885 332    3589999999999887643   35678999999999997 


Q ss_pred             CCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCC
Q 042919          238 QLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN  317 (428)
Q Consensus       238 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  317 (428)
                      .++    ..+++|+.|++++|.+.. .+.   ..++|++|++++|.+. .++.    .+++|+.|++++|.+....  ..
T Consensus       175 ~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~lp--~~  239 (622)
T 3g06_A          175 SLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTSLP--VL  239 (622)
T ss_dssp             CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCC--CC
T ss_pred             CCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCcCC--CC
Confidence            455    337899999999999885 332   3578999999999987 5553    3578999999999888644  56


Q ss_pred             CCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919          318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF  387 (428)
Q Consensus       318 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  387 (428)
                      +++|+.|++++|.++....    .+++|+.|++++|.++ .+|..+.++++|+.|+|++|++++..+..+
T Consensus       240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence            7889999999998875333    5788999999999998 778888999999999999999887666544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=3.2e-25  Score=199.79  Aligned_cols=236  Identities=19%  Similarity=0.144  Sum_probs=177.9

Q ss_pred             CccEEEcCCCCCccch-hHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecC
Q 042919          153 QLKALNLRNCSLQALP-SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDIS  231 (428)
Q Consensus       153 ~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  231 (428)
                      +|++|++++|.+..++ ..+..+++|+.|++++|.+....+   +..+++|++|++++|.+....    ..++|+.|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc----CCCCcCEEECC
Confidence            4777777777776554 567778888888888888764443   467788888888888776533    33788888888


Q ss_pred             CCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc
Q 042919          232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG  311 (428)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  311 (428)
                      +|.+.+..+.    .+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+...+++|+.|++++|.+..
T Consensus       108 ~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          108 NNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             SSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            8887633221    257889999999888876677788888899999999888744444444567889999999988887


Q ss_pred             ccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC-cCCCCcc-cc
Q 042919          312 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC-GSVPSSF-NL  389 (428)
Q Consensus       312 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~-~~  389 (428)
                      ......+++|++|++++|.+++..+ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..+..+ .+
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          184 VKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             EECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             cccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence            7666678889999999988875444 4778888999999999888 56777888889999999999887 4444444 77


Q ss_pred             ccCceEEccCCc
Q 042919          390 SSLRRLYMHMNA  401 (428)
Q Consensus       390 ~~L~~L~l~~~~  401 (428)
                      ++|+.|++.++.
T Consensus       262 ~~L~~l~l~~~~  273 (317)
T 3o53_A          262 QRVQTVAKQTVK  273 (317)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ccceEEECCCch
Confidence            888888888554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3e-23  Score=183.33  Aligned_cols=204  Identities=24%  Similarity=0.216  Sum_probs=150.5

Q ss_pred             CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEE
Q 042919          223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL  302 (428)
Q Consensus       223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  302 (428)
                      +++++|+++++.+.+..+..+.. +++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHhHhcc-ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence            35777777777766333333433 777888888888777655666777888888888888776 4444456677888888


Q ss_pred             eCCCcccccccc--cCCCCCcceeecccCccCcc-chhhhhcCCCCcEEEccCCcccccCCcccCCCCCCc----EEeCC
Q 042919          303 SLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGK-IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQ----FLDIS  375 (428)
Q Consensus       303 ~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~----~L~L~  375 (428)
                      ++++|.+.....  +..+++|++|++++|.+.+. .+..+..+++|++|++++|++++..+..+..+++|+    .|+++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            888887765544  67788888888888887753 367788888888888888888766666666666666    78888


Q ss_pred             CCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          376 ENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       376 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      +|++++..+..+...+|+.|++++|.++...+..+..+++|+.|++++|+++|
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             SSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            88888776666655688888888888886666667888888888888888875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=4.6e-24  Score=192.23  Aligned_cols=243  Identities=22%  Similarity=0.212  Sum_probs=177.6

Q ss_pred             ccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCC
Q 042919           48 TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHS  127 (428)
Q Consensus        48 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  127 (428)
                      ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.++      ...+
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l------~~~~   99 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------LVGP   99 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE------EECT
T ss_pred             HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc------cCCC
Confidence            445567899999999999998888899999999999999998875443  88899999999999987754      2348


Q ss_pred             CCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchh-HhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEE
Q 042919          128 KLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS-ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLY  206 (428)
Q Consensus       128 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  206 (428)
                      +|++|++++|.+.......  .  ++|++|++++|.+..++. .+..+++|+.|++++|.+....+..+...+++|++|+
T Consensus       100 ~L~~L~l~~n~l~~~~~~~--~--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A          100 SIETLHAANNNISRVSCSR--G--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             TCCEEECCSSCCSEEEECC--C--SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CcCEEECCCCccCCcCccc--c--CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            9999999988775443322  2  359999999999877754 6677889999999999888766666656788899999


Q ss_pred             ecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCC
Q 042919          207 LLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG  286 (428)
Q Consensus       207 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  286 (428)
                      +++|.+.... ....+++|++|++++|.+. .++..+.. +++|+.|++++|.+. ..+..+..+++|++|++++|++..
T Consensus       176 L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          176 LQYNFIYDVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             CTTSCCCEEE-CCCCCTTCCEEECCSSCCC-EECGGGGG-GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred             CCCCcCcccc-cccccccCCEEECCCCcCC-cchhhhcc-cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence            9888877653 2234677777777777776 34444443 677777777777776 345566677777777777777652


Q ss_pred             CCchhhhcCCCCCCEEeCCC
Q 042919          287 ELPRQFLSGCFSLSFLSLSD  306 (428)
Q Consensus       287 ~~~~~~~~~~~~L~~L~l~~  306 (428)
                      ......+..++.|+.+++.+
T Consensus       252 ~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          252 GTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             HHHHHHHHTCHHHHHHHHHH
T ss_pred             cCHHHHHhccccceEEECCC
Confidence            23333445555566555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=6.7e-22  Score=175.30  Aligned_cols=175  Identities=24%  Similarity=0.221  Sum_probs=90.3

Q ss_pred             CCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeec
Q 042919          248 PELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYL  326 (428)
Q Consensus       248 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l  326 (428)
                      ++++.|++++|.+....+..+..+++|++|++++|.+. .++..  ..+++|+.|++++|.+..... +..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC
Confidence            34455555555444333444445555555555555443 22211  344455555555555443332 344555555555


Q ss_pred             ccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCcc
Q 042919          327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGS  405 (428)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~  405 (428)
                      ++|.++...+..|..+++|+.|++++|+++...+..+..+++|+.|++++|+++...+..+ .+++|+.|++++|++. .
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence            5555554444555555556666665555554444445555556666666665554444444 4555666666666555 4


Q ss_pred             CCcccccCCCCCEEECCCCcc
Q 042919          406 IPGALRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       406 ~~~~~~~~~~L~~L~l~~~~~  426 (428)
                      +|..+..+++|+.+++++||+
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCB
T ss_pred             cChhhcccccCCeEEeCCCCc
Confidence            455555555566666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=3.7e-23  Score=196.89  Aligned_cols=233  Identities=20%  Similarity=0.155  Sum_probs=175.1

Q ss_pred             CccEEEcCCCCCccc-hhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecC
Q 042919          153 QLKALNLRNCSLQAL-PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDIS  231 (428)
Q Consensus       153 ~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  231 (428)
                      +|+.|++++|.+..+ |..+..+++|+.|++++|.+....+   +..+++|+.|++++|.+.+..    ..++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC----CCCCcCEEECc
Confidence            477777777777555 3567777788888888887765444   457788888888888776543    23778888888


Q ss_pred             CCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc
Q 042919          232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG  311 (428)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  311 (428)
                      +|.+.+..+.    .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+...+++|+.|++++|.+..
T Consensus       108 ~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          108 NNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            8887633222    257889999999988877777888888999999999988755555544578899999999998887


Q ss_pred             ccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC-cCCCCcc-cc
Q 042919          312 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC-GSVPSSF-NL  389 (428)
Q Consensus       312 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~-~~  389 (428)
                      ......+++|+.|++++|.+++..+. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..+..+ .+
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          184 VKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             EECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             ccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence            77677788899999999888865444 778888999999999888 46777888888999999998887 3333333 66


Q ss_pred             ccCceEEcc
Q 042919          390 SSLRRLYMH  398 (428)
Q Consensus       390 ~~L~~L~l~  398 (428)
                      +.|+.+++.
T Consensus       262 ~~L~~l~~~  270 (487)
T 3oja_A          262 QRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHHH
T ss_pred             CCCcEEecc
Confidence            777777775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=5.9e-23  Score=195.50  Aligned_cols=243  Identities=22%  Similarity=0.219  Sum_probs=169.0

Q ss_pred             ccchhHhhhCC----CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCC
Q 042919          165 QALPSILLQQL----DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLP  240 (428)
Q Consensus       165 ~~l~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  240 (428)
                      ..+|..+..+.    +|+.|++++|.+....+..+ ..+++|+.|++++|.+.+..+ ...+++|++|++++|.+.+ ++
T Consensus        20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~   96 (487)
T 3oja_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL   96 (487)
T ss_dssp             TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE
T ss_pred             hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC
Confidence            45566665554    89999999999987665554 689999999999999876544 6778889999999888763 22


Q ss_pred             chhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC-C
Q 042919          241 GNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP-N  317 (428)
Q Consensus       241 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~-~  317 (428)
                          . .++|+.|++++|.+.+..+.   .+++|++|++++|.+.+ .+...+..+++|+.|++++|.+....+  +. .
T Consensus        97 ----~-~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~  167 (487)
T 3oja_A           97 ----V-GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS  167 (487)
T ss_dssp             ----E-CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             ----C-CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence                1 47888888888888754332   45778888888888773 333345667788888888877765433  32 5


Q ss_pred             CCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEc
Q 042919          318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYM  397 (428)
Q Consensus       318 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l  397 (428)
                      +++|++|++++|.+++..  ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++.+.....+++|+.|++
T Consensus       168 l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL  244 (487)
T ss_dssp             TTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred             CCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence            677777777777776542  23346777777777777774 344477777777777777777753333226677777777


Q ss_pred             cCCcCC-ccCCcccccCCCCCEEECC
Q 042919          398 HMNAFN-GSIPGALRRSLSLTVLDLR  422 (428)
Q Consensus       398 ~~~~~~-~~~~~~~~~~~~L~~L~l~  422 (428)
                      ++|++. +..|..+..++.|+.++++
T Consensus       245 ~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCcCcchHHHHHhCCCCcEEecc
Confidence            777776 4455556666666655553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.1e-20  Score=166.06  Aligned_cols=200  Identities=28%  Similarity=0.324  Sum_probs=93.6

Q ss_pred             CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCccc-CCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEE
Q 042919          176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLN  254 (428)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  254 (428)
                      +.+.++++++.++. ++..+   .++++.|+++++.+..... ....+++|++|+++++.+. .++...+..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCCc-cCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            35566666666552 33211   2445555555555544322 2334445555555555444 33333322244555555


Q ss_pred             ccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCcc
Q 042919          255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGK  334 (428)
Q Consensus       255 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  334 (428)
                      +++|.+....+..+..+++|++|++++|.+. .++...+                      ..+++|++|++++|.+...
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~----------------------~~l~~L~~L~Ls~n~l~~~  148 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF----------------------DSLTKLTYLSLGYNELQSL  148 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTT----------------------TTCTTCCEEECCSSCCCCC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHh----------------------CcCcCCCEEECCCCcCCcc
Confidence            5555444333344444455555555554444 2333333                      4444555555555544444


Q ss_pred             chhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCC
Q 042919          335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       335 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  403 (428)
                      ....+..+++|+.|++++|.++...+..+..+++|+.|++++|++++..+..+ .+++|+.|++++|++.
T Consensus       149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            44444445555555555555543333344445555555555555544433333 4455555555555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=7.3e-23  Score=186.31  Aligned_cols=252  Identities=17%  Similarity=0.193  Sum_probs=174.2

Q ss_pred             ccEEEcCCCCCccchhHhhhC--CCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCC--cccCCCCCCCccEEe
Q 042919          154 LKALNLRNCSLQALPSILLQQ--LDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG--NFQLPSSKHDLLRLD  229 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~  229 (428)
                      ++.++++++.+.  +..+..+  ++++.|++.++.+....+..  ..+++|+.|++++|.+..  .......+++|++|+
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~--~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH--FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC--CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh--ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            778888887765  5566666  78899999988877655542  367888888888887653  333456778888888


Q ss_pred             cCCCccccCCCchhhhcCCCCcEEEccCC-CCCCC-CCccccCCCCCCEEECcCc-ccCCCCchhhhcCCC-CCCEEeCC
Q 042919          230 ISHNKFSCQLPGNMGKILPELLSLNLSEN-GFEGR-IPSSMSEMKRLESLDLSSN-NFSGELPRQFLSGCF-SLSFLSLS  305 (428)
Q Consensus       230 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l~  305 (428)
                      +++|.+.+..+..+.. +++|++|++++| .+++. .+..+..+++|++|++++| .+.+......+..++ +|++|+++
T Consensus       125 L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             CTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             CcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            8888776555555555 788888888888 55532 4455677888888888888 665332234456777 88888888


Q ss_pred             Ccc--ccccc---ccCCCCCcceeecccCc-cCccchhhhhcCCCCcEEEccCCc-ccccCCcccCCCCCCcEEeCCCCc
Q 042919          306 DNH--LQGEV---VFPNSTNLCWLYLNNNH-FSGKIQDGLSKATSLLELDLSNNM-LYGQIPPWFGNLSGLQFLDISENQ  378 (428)
Q Consensus       306 ~~~--~~~~~---~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~L~~~~  378 (428)
                      +|.  +.+..   .+..+++|++|++++|. +++..+..+.++++|++|++++|. ++......++++++|+.|++++| 
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            884  33211   25567888888888887 666666777888888888888884 43333335777888888888888 


Q ss_pred             CCcCCCCccccccCceEEccCCcCCccCCccccc
Q 042919          379 LCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR  412 (428)
Q Consensus       379 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  412 (428)
                      +++..... -..+++.|++++|++++..|..++.
T Consensus       283 i~~~~~~~-l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          283 VPDGTLQL-LKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             SCTTCHHH-HHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             cCHHHHHH-HHhhCcceEEecccCccccCCcccc
Confidence            33222111 1234677778888888777766654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.2e-23  Score=195.03  Aligned_cols=254  Identities=19%  Similarity=0.214  Sum_probs=124.6

Q ss_pred             ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhh---hhcCCCCCEEEecCCccCCccc-----------CC
Q 042919          154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWL---LQNNTKLDTLYLLNNSLSGNFQ-----------LP  219 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-----------~~  219 (428)
                      |+...+....+..++..+..+++|+.|++++|.+....+..+   +..+++|+.|++++|.......           .+
T Consensus        11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l   90 (386)
T 2ca6_A           11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL   90 (386)
T ss_dssp             CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence            444444444556778888889999999999998876544432   3456777788777764432110           01


Q ss_pred             CCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchh---hhcCC
Q 042919          220 SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQ---FLSGC  296 (428)
Q Consensus       220 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~  296 (428)
                      ..+++|++|++++|.+......                     ..+..+..+++|++|++++|.+.+..+..   .+..+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l  149 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQE---------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL  149 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHH---------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred             hhCCcccEEECCCCcCCHHHHH---------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH
Confidence            2344555555555544421100                     12233344444444444444433111110   01111


Q ss_pred             ---------CCCCEEeCCCccccccc------ccCCCCCcceeecccCccCcc-----chhhhhcCCCCcEEEccCCccc
Q 042919          297 ---------FSLSFLSLSDNHLQGEV------VFPNSTNLCWLYLNNNHFSGK-----IQDGLSKATSLLELDLSNNMLY  356 (428)
Q Consensus       297 ---------~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~i~  356 (428)
                               ++|++|++++|.+....      .+..+++|++|++++|.++..     .+..+..+++|+.|++++|.++
T Consensus       150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence                     44555555555443211      133444555555555554421     1114445555555555555553


Q ss_pred             ----ccCCcccCCCCCCcEEeCCCCcCCcCCC----Ccc---ccccCceEEccCCcCCc----cCCccc-ccCCCCCEEE
Q 042919          357 ----GQIPPWFGNLSGLQFLDISENQLCGSVP----SSF---NLSSLRRLYMHMNAFNG----SIPGAL-RRSLSLTVLD  420 (428)
Q Consensus       357 ----~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~---~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~  420 (428)
                          ..++..+..+++|+.|+|++|.+++...    ..+   .+++|+.|++++|.+..    .+|..+ .++++|+.|+
T Consensus       230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence                2344445555555555555555544311    111   14555555555555553    244444 3455555555


Q ss_pred             CCCCccCC
Q 042919          421 LRDNEFSG  428 (428)
Q Consensus       421 l~~~~~~~  428 (428)
                      +++|+++|
T Consensus       310 l~~N~l~~  317 (386)
T 2ca6_A          310 LNGNRFSE  317 (386)
T ss_dssp             CTTSBSCT
T ss_pred             ccCCcCCc
Confidence            55555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=3.1e-21  Score=172.72  Aligned_cols=193  Identities=21%  Similarity=0.308  Sum_probs=137.0

Q ss_pred             hcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCE
Q 042919          197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES  276 (428)
Q Consensus       197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  276 (428)
                      ..+++|+.|+++++.+.... ....+++|++|++++|.+. .++. +. .+++|++|++++|.+.+.  ..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            35678888888888776543 4456778888888888776 3333 33 377888888888877643  35777788888


Q ss_pred             EECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccc
Q 042919          277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY  356 (428)
Q Consensus       277 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  356 (428)
                      |++++|.+. .++.  +..+++|+.|++++|.+.....+..+++|++|++++|.+.+..+  +..+++|+.|++++|.++
T Consensus       112 L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          112 LDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             EECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            888888776 3433  56777888888888877766667777788888888877765433  677778888888888776


Q ss_pred             ccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCC
Q 042919          357 GQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFN  403 (428)
Q Consensus       357 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  403 (428)
                      +. +. +..+++|+.|++++|++++..+ ...+++|+.|++++|+++
T Consensus       187 ~~-~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          187 DI-SP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CC-GG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred             cC-hh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence            43 22 6777778888888887775543 226777888888888776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=8.1e-23  Score=183.63  Aligned_cols=249  Identities=20%  Similarity=0.206  Sum_probs=127.9

Q ss_pred             ccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccC-cchhhhhc-------cCCCCcEEeCCCCccCCccccc
Q 042919           50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT-GNLQSVIA-------NIKSLEYLSLDDNNFEGLFSFN  121 (428)
Q Consensus        50 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~  121 (428)
                      ++..++|++|+++++.+  ..|..+...  |+.|+++++.+. ...+..+.       ++++|++|++++|.+.+..+..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34556677777777766  334433332  666666666553 12233332       4666777777776665443321


Q ss_pred             cc-cCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhC-----CCccEEEccCCcCCCCCchhh
Q 042919          122 SL-KNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQ-----LDLRFIDLSHNKLQGIFPSWL  195 (428)
Q Consensus       122 ~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~  195 (428)
                      .+ ..+++                         |++|++++|.+..+|..+..+     ++|++|++++|.+....+..+
T Consensus       115 ~~~~~l~~-------------------------L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~  169 (312)
T 1wwl_A          115 LLEATGPD-------------------------LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV  169 (312)
T ss_dssp             SSSCCSCC-------------------------CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred             HHHhcCCC-------------------------ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence            11 34444                         555555555554445555544     677777777777765443333


Q ss_pred             hhcCCCCCEEEecCCccCCc---cc--CCCCCCCccEEecCCCcccc--CCCchhhhcCCCCcEEEccCCCCCCCCC-cc
Q 042919          196 LQNNTKLDTLYLLNNSLSGN---FQ--LPSSKHDLLRLDISHNKFSC--QLPGNMGKILPELLSLNLSENGFEGRIP-SS  267 (428)
Q Consensus       196 ~~~~~~L~~L~l~~~~~~~~---~~--~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~  267 (428)
                       ..+++|++|++++|.+.+.   ..  ....+++|++|++++|.+..  ..+..++..+++|++|++++|.+.+..+ ..
T Consensus       170 -~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          170 -RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             -CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             -ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence             4566666666666654321   11  11445555566665555541  1112222234556666666665554332 23


Q ss_pred             ccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcE
Q 042919          268 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE  347 (428)
Q Consensus       268 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  347 (428)
                      +..+++|++|++++|.+. .++....                         ++|++|++++|.+++. +. +..+++|++
T Consensus       249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~-------------------------~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~  300 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLK-QVPKGLP-------------------------AKLSVLDLSYNRLDRN-PS-PDELPQVGN  300 (312)
T ss_dssp             CCCCTTCCEEECTTSCCS-SCCSSCC-------------------------SEEEEEECCSSCCCSC-CC-TTTSCEEEE
T ss_pred             hhhcCCCCEEECCCCccC-hhhhhcc-------------------------CCceEEECCCCCCCCC-hh-HhhCCCCCE
Confidence            334455555555555554 3333211                         4555555555555433 22 455555666


Q ss_pred             EEccCCccc
Q 042919          348 LDLSNNMLY  356 (428)
Q Consensus       348 L~l~~~~i~  356 (428)
                      |++++|+++
T Consensus       301 L~L~~N~l~  309 (312)
T 1wwl_A          301 LSLKGNPFL  309 (312)
T ss_dssp             EECTTCTTT
T ss_pred             EeccCCCCC
Confidence            666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=8.1e-21  Score=167.06  Aligned_cols=195  Identities=27%  Similarity=0.343  Sum_probs=118.2

Q ss_pred             CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCC
Q 042919          221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS  300 (428)
Q Consensus       221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  300 (428)
                      .+++|+.|++.++.+. .++ .+.. +++|++|++++|.+.+.  ..+..+++|++|++++|.+. .++...+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIK-SVQ-GIQY-LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHTTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred             cccceeeeeeCCCCcc-ccc-cccc-CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCC
Confidence            4556667777666654 222 2322 66677777777666532  35666667777777776665 44444455666666


Q ss_pred             EEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCc
Q 042919          301 FLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ  378 (428)
Q Consensus       301 ~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~  378 (428)
                      +|++++|.+.....  +..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            66666666665443  5566666666666666665555555666666666666666665555555666666666666666


Q ss_pred             CCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          379 LCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       379 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      +++..+..+ .+++|+.|++++|++.       +.|+.|+.+++++|.++|
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGG
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCC
Confidence            665555544 5666666666666654       234455555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=3.6e-21  Score=169.35  Aligned_cols=184  Identities=23%  Similarity=0.288  Sum_probs=132.0

Q ss_pred             CCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCE
Q 042919          222 KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF  301 (428)
Q Consensus       222 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  301 (428)
                      +++|++|++++|.+.+ + ..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.
T Consensus        62 l~~L~~L~l~~n~l~~-~-~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD-I-SALKE-LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY  137 (272)
T ss_dssp             CTTCCEEECTTSCCCC-C-GGGTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCCcEEECCCCCCCC-c-hhhcC-CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCE
Confidence            4444444444444432 1 12222 667777777777776655556677777777777777766 455555666777777


Q ss_pred             EeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919          302 LSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL  379 (428)
Q Consensus       302 L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~  379 (428)
                      |++++|.+.....  +..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus       138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            7777777765544  56778888888888888877777778888999999999988877777788889999999999877


Q ss_pred             CcCCCCccccccCceEEccCCcCCccCCcccccCCC
Q 042919          380 CGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLS  415 (428)
Q Consensus       380 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  415 (428)
                      .+      .+++|+.+++++|.+.+..|..++.++.
T Consensus       218 ~~------~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          218 DC------TCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CC------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cc------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            63      3667888889999888888887776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2.1e-22  Score=183.29  Aligned_cols=239  Identities=19%  Similarity=0.197  Sum_probs=138.4

Q ss_pred             ccccChHHHHHHhcccceE-EEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcC--CCCCEEE
Q 042919            8 IIKKPQELWHKFFQKGSIT-YLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNL--THIKVLD   84 (428)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~-~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~   84 (428)
                      ...+|++++..+|..-..+ .+.+...|+.|.++..         .-..++.++++++.+.   +..+..+  ++++.|+
T Consensus         9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~---------~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~   76 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS---------DESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFR   76 (336)
T ss_dssp             SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT---------CSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEE
T ss_pred             hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc---------CchhheeeccccccCC---HHHHHhhhhccceEEE
Confidence            4578999988887544333 2445567887776541         1135889999988766   4566666  8999999


Q ss_pred             ccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc-ccCCCCCCCcCCccEEEcCCC-
Q 042919           85 LSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNLRNC-  162 (428)
Q Consensus        85 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~-  162 (428)
                      ++++.+.+..+. +..+++|++|++++|.+.+...+..+..+++|++|++++|.+.. ....+...  ++|++|++++| 
T Consensus        77 l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~--~~L~~L~L~~~~  153 (336)
T 2ast_B           77 CPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN--SNLVRLNLSGCS  153 (336)
T ss_dssp             CTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC--TTCSEEECTTCB
T ss_pred             cCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC--CCCCEEECCCCC
Confidence            999988755444 56789999999999987654334567777887777777765431 12222222  23555555555 


Q ss_pred             CCc--cchhHhhhCCCccEEEccCC-cCCCCCchhhhhcCC-CCCEEEecCCccCCcccCCCCCCCccEEecCCCccc-c
Q 042919          163 SLQ--ALPSILLQQLDLRFIDLSHN-KLQGIFPSWLLQNNT-KLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFS-C  237 (428)
Q Consensus       163 ~~~--~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~  237 (428)
                      .+.  .++..+..+++|+.|++++| .+++......+..++ +|++|++++|..                     .++ .
T Consensus       154 ~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~---------------------~~~~~  212 (336)
T 2ast_B          154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---------------------NLQKS  212 (336)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG---------------------GSCHH
T ss_pred             CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc---------------------cCCHH
Confidence            343  24444555555555555555 444322222223344 444444443321                     121 1


Q ss_pred             CCCchhhhcCCCCcEEEccCCC-CCCCCCccccCCCCCCEEECcCcc
Q 042919          238 QLPGNMGKILPELLSLNLSENG-FEGRIPSSMSEMKRLESLDLSSNN  283 (428)
Q Consensus       238 ~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~  283 (428)
                      .++..+ ..+++|++|++++|. +++..+..+.++++|++|++++|.
T Consensus       213 ~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          213 DLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHHH-HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             HHHHHH-hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            122222 225666666666665 444444555566666666666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=2.5e-22  Score=184.34  Aligned_cols=248  Identities=19%  Similarity=0.170  Sum_probs=124.5

Q ss_pred             EEcCCCCCccc-hhHhhhCCCccEEEccCCcCCCCCchh---hhhcCC-CCCEEEecCCccCCcc-cCCC----C-CCCc
Q 042919          157 LNLRNCSLQAL-PSILLQQLDLRFIDLSHNKLQGIFPSW---LLQNNT-KLDTLYLLNNSLSGNF-QLPS----S-KHDL  225 (428)
Q Consensus       157 L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~-~L~~L~l~~~~~~~~~-~~~~----~-~~~L  225 (428)
                      +.++.+++... |..+...++|+.|++++|.+.+..+..   .+..++ +|++|++++|.+.... ....    . .++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            45666777544 444444445888888888887665522   224555 7777777777665421 1111    1 2566


Q ss_pred             cEEecCCCccccCCCchhhhc---C-CCCcEEEccCCCCCCCCCccc----cC-CCCCCEEECcCcccCCCCchh---hh
Q 042919          226 LRLDISHNKFSCQLPGNMGKI---L-PELLSLNLSENGFEGRIPSSM----SE-MKRLESLDLSSNNFSGELPRQ---FL  293 (428)
Q Consensus       226 ~~L~l~~~~~~~~~~~~~~~~---~-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~~~~---~~  293 (428)
                      ++|++++|.+++..+..++..   + ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+.....   .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            677776666654443333221   2 566666666666654433322    22 246666666666655322211   11


Q ss_pred             cCCC-CCCEEeCCCcccccccc------cCCC-CCcceeecccCccCccc----hhhhhc-CCCCcEEEccCCcccccCC
Q 042919          294 SGCF-SLSFLSLSDNHLQGEVV------FPNS-TNLCWLYLNNNHFSGKI----QDGLSK-ATSLLELDLSNNMLYGQIP  360 (428)
Q Consensus       294 ~~~~-~L~~L~l~~~~~~~~~~------~~~~-~~L~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~l~~~~i~~~~~  360 (428)
                      ...+ +|++|++++|.+.+...      +..+ ++|++|++++|.+++..    +..+.. .++|++|++++|.+++..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            2232 56666666665544332      2233 35555555555554422    222222 2355555555555543322


Q ss_pred             ----cccCCCCCCcEEeCCCCcCCcCCCC-------cc-ccccCceEEccCCcCCc
Q 042919          361 ----PWFGNLSGLQFLDISENQLCGSVPS-------SF-NLSSLRRLYMHMNAFNG  404 (428)
Q Consensus       361 ----~~~~~~~~L~~L~L~~~~~~~~~~~-------~~-~~~~L~~L~l~~~~~~~  404 (428)
                          ..+..+++|+.|++++|.+.+....       .+ .+++|+.|++++|++..
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence                2234445555555555553222211       11 34455555555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=2.8e-20  Score=161.65  Aligned_cols=176  Identities=24%  Similarity=0.339  Sum_probs=115.8

Q ss_pred             CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEE
Q 042919          223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL  302 (428)
Q Consensus       223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  302 (428)
                      ...+.++++++.+. .+|..+   .++++.|++++|.+....+..+.++++|++|++++|.+. .++...+..+++|+.|
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEE
Confidence            34667777777776 555544   357788888888877666667777888888888887776 4444445667777777


Q ss_pred             eCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919          303 SLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       303 ~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      ++++|.+.....  +..+++|++|++++|.++...+..|..+++|+.|++++|.+++..+..+..+++|+.|+|++|+++
T Consensus        89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            777776665442  556666666666666666555555566666666666666666444445666666666666666666


Q ss_pred             cCCCCcc-ccccCceEEccCCcCC
Q 042919          381 GSVPSSF-NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       381 ~~~~~~~-~~~~L~~L~l~~~~~~  403 (428)
                      +..+..+ .+++|+.|++++|++.
T Consensus       169 ~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          169 SVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccCHHHHhCCCCCCEEEeeCCcee
Confidence            5555444 5666666666666665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=5.4e-21  Score=171.65  Aligned_cols=229  Identities=21%  Similarity=0.192  Sum_probs=139.4

Q ss_pred             CccEEEccCCcCCCCCchhhh--hcCCCCCEEEecCCccCCcccC-C--CCCCCccEEecCCCccccCCC----chhhhc
Q 042919          176 DLRFIDLSHNKLQGIFPSWLL--QNNTKLDTLYLLNNSLSGNFQL-P--SSKHDLLRLDISHNKFSCQLP----GNMGKI  246 (428)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~-~--~~~~~L~~L~l~~~~~~~~~~----~~~~~~  246 (428)
                      .++.+.+.++.+.+.....+.  ..+++|++|++++|.+.+.... .  ..+++|++|++++|.+.+..+    ..+. .
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence            456666666555422111111  1345577777777766543222 1  445555555555555543222    1111 2


Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeec
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  326 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  326 (428)
                      +++|++|++++|.+....+..+..+++|++|++++|++.+...                   +.....+..+++|++|++
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------------~~~~~~~~~l~~L~~L~L  204 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG-------------------LMAALCPHKFPAIQNLAL  204 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-------------------HHTTSCTTSSCCCCSCBC
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh-------------------hhHHHhhhcCCCCCEEEC
Confidence            4445555555555444444444444444444444444321100                   000111356778888888


Q ss_pred             ccCccCccchh---hhhcCCCCcEEEccCCcccccCCcccCCC---CCCcEEeCCCCcCCcCCCCccccccCceEEccCC
Q 042919          327 NNNHFSGKIQD---GLSKATSLLELDLSNNMLYGQIPPWFGNL---SGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMN  400 (428)
Q Consensus       327 ~~~~~~~~~~~---~l~~~~~L~~L~l~~~~i~~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~  400 (428)
                      ++|.++.....   .+..+++|++|++++|.+++..|..+..+   ++|++|++++|+++. .+..+ +++|+.|++++|
T Consensus       205 s~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~-~~~L~~L~Ls~N  282 (310)
T 4glp_A          205 RNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGL-PAKLRVLDLSSN  282 (310)
T ss_dssp             CSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCC-CSCCSCEECCSC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhh-cCCCCEEECCCC
Confidence            88888633221   35678999999999999987767777776   699999999999984 44443 389999999999


Q ss_pred             cCCccCCcccccCCCCCEEECCCCccCC
Q 042919          401 AFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       401 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      ++++. |. +..+++|+.|++++|+|+.
T Consensus       283 ~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          283 RLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             cCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            99843 44 6788999999999999873

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=1.8e-20  Score=165.39  Aligned_cols=219  Identities=20%  Similarity=0.162  Sum_probs=114.8

Q ss_pred             EEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCccc-CCCCCCCccEEecCCCcc
Q 042919          157 LNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ-LPSSKHDLLRLDISHNKF  235 (428)
Q Consensus       157 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~  235 (428)
                      ++..+.++..+|..+.  ++|+.|++++|.+....+.. +..+++|++|++++|.+..... ....+++|++|++++|.+
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTT-TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhH-hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            3444445566665432  47899999998887554433 3567788888888877665332 344566666666666666


Q ss_pred             ccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc-
Q 042919          236 SCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-  314 (428)
Q Consensus       236 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-  314 (428)
                      ....+..+.. +++|++|++++|.+....+..+..+++|++|++++|.+.+......+..+++|+.|++++|.+..... 
T Consensus        89 ~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           89 QSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CEECTTTTTT-CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CccChhhhcC-CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            5333333333 56666666666666554444566666666666666665421112224455555555555555443221 


Q ss_pred             -cCCCCCcc----eeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919          315 -FPNSTNLC----WLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       315 -~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                       +..+++|+    +|++++|.+.+..+..+. ..+|+.|++++|.+++..+..+.++++|+.|++++|++.
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             HhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence             22222222    444444444433222222 224444444444444333333444444444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.1e-20  Score=162.90  Aligned_cols=197  Identities=15%  Similarity=0.148  Sum_probs=152.6

Q ss_pred             CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCC-CCCCCCccccCCCCCCEEECcC-cccCCCCchhhhcCCCCCC
Q 042919          223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENG-FEGRIPSSMSEMKRLESLDLSS-NNFSGELPRQFLSGCFSLS  300 (428)
Q Consensus       223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~  300 (428)
                      ++++.|+++++.+. .++...+..+++|++|++++|. +....+..+..+++|++|++++ |.+. .++...+..+++|+
T Consensus        31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCC
T ss_pred             CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCC
Confidence            36777777777776 3333333337888888888886 7655666788888888888887 7776 56656677888889


Q ss_pred             EEeCCCcccccccccCCCCCcc---eeecccC-ccCccchhhhhcCCCCc-EEEccCCcccccCCcccCCCCCCcEEeCC
Q 042919          301 FLSLSDNHLQGEVVFPNSTNLC---WLYLNNN-HFSGKIQDGLSKATSLL-ELDLSNNMLYGQIPPWFGNLSGLQFLDIS  375 (428)
Q Consensus       301 ~L~l~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~L~~L~L~  375 (428)
                      .|++++|.+.....+..+++|+   +|++++| .++...+..|..+++|+ .|++++|+++...+..+.. ++|+.|+++
T Consensus       109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            9988888887766677788887   9999999 88877777788999999 9999999998444444555 899999999


Q ss_pred             CCc-CCcCCCCcc-cc-ccCceEEccCCcCCccCCcccccCCCCCEEECCCCc
Q 042919          376 ENQ-LCGSVPSSF-NL-SSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       376 ~~~-~~~~~~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  425 (428)
                      +|+ +++..+..+ .+ ++|+.|++++|+++ .+|..  .+++|+.|+++++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            995 887767766 67 89999999999998 44543  67889999998874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=1.1e-19  Score=161.09  Aligned_cols=199  Identities=25%  Similarity=0.216  Sum_probs=124.3

Q ss_pred             hhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCCCccccCCCchhhhcCCCC
Q 042919          172 LQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPEL  250 (428)
Q Consensus       172 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  250 (428)
                      ..++++++++++++.++. ++..+   .+.++.|++++|.+.... .....+++|+.|++++|.+... +..  ..+++|
T Consensus         7 ~~l~~l~~l~~~~~~l~~-ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~--~~l~~L   79 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD--GTLPVL   79 (290)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC--SCCTTC
T ss_pred             cccCCccEEECCCCCCCc-CCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC--CCCCcC
Confidence            445677777777777663 33322   256777777777765532 2345666777777777766532 221  236667


Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeeccc
Q 042919          251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNN  328 (428)
Q Consensus       251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~  328 (428)
                      ++|++++|.+. ..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.....  +..+++|+.|++++
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            77777777666 44555666677777777777665 4444445666677777777766665443  55666677777776


Q ss_pred             CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919          329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       329 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      |.++......|..+++|+.|++++|.++ .+|..+...+.|+.|++++|++.
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            6666555555666666777777766666 55555666666667777666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.7e-21  Score=180.65  Aligned_cols=152  Identities=23%  Similarity=0.283  Sum_probs=99.6

Q ss_pred             CCCcEEEccCCCCCCC-CC---ccccCCCCCCEEECcCcccCCC----CchhhhcCCCCCCEEeCCCcccccc----c--
Q 042919          248 PELLSLNLSENGFEGR-IP---SSMSEMKRLESLDLSSNNFSGE----LPRQFLSGCFSLSFLSLSDNHLQGE----V--  313 (428)
Q Consensus       248 ~~L~~L~l~~~~~~~~-~~---~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~--  313 (428)
                      ++|++|++++|.+... .+   ..+..+++|++|++++|.+...    +....+..+++|+.|++++|.+...    .  
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            7899999999888632 22   3566788888888888877522    1111455678888888888877521    1  


Q ss_pred             ccCCCCCcceeecccCccCcc----chhhhhc--CCCCcEEEccCCcccc----cCCccc-CCCCCCcEEeCCCCcCCcC
Q 042919          314 VFPNSTNLCWLYLNNNHFSGK----IQDGLSK--ATSLLELDLSNNMLYG----QIPPWF-GNLSGLQFLDISENQLCGS  382 (428)
Q Consensus       314 ~~~~~~~L~~L~l~~~~~~~~----~~~~l~~--~~~L~~L~l~~~~i~~----~~~~~~-~~~~~L~~L~L~~~~~~~~  382 (428)
                      .+..+++|++|++++|.+++.    .+..+..  +++|+.|++++|.+++    .+|..+ .++++|+.|++++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            266777788888888877654    2334432  7778888888887775    255555 4567788888888877755


Q ss_pred             CC--Ccc--ccccCceEEccC
Q 042919          383 VP--SSF--NLSSLRRLYMHM  399 (428)
Q Consensus       383 ~~--~~~--~~~~L~~L~l~~  399 (428)
                      .+  ..+  .++.++.+++..
T Consensus       319 ~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          319 DDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             SHHHHHHHHHHHHHTCCEECC
T ss_pred             hhHHHHHHHHhhhcCcchhhh
Confidence            53  222  455555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=3.2e-19  Score=154.95  Aligned_cols=179  Identities=25%  Similarity=0.231  Sum_probs=149.3

Q ss_pred             CCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEEC
Q 042919          200 TKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL  279 (428)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  279 (428)
                      ...+.++++++.+...+...  .++++.|+++++.+.+..+..+.. +++|++|++++|.+.+..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcC-cccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45678888888877654333  368999999999988544444444 899999999999998877778899999999999


Q ss_pred             cCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccc
Q 042919          280 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG  357 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~  357 (428)
                      ++|.+. .++...+..+++|+.|++++|.+.....  +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus        91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            999987 6666667889999999999999886655  6789999999999999987777788899999999999999987


Q ss_pred             cCCcccCCCCCCcEEeCCCCcCCcC
Q 042919          358 QIPPWFGNLSGLQFLDISENQLCGS  382 (428)
Q Consensus       358 ~~~~~~~~~~~L~~L~L~~~~~~~~  382 (428)
                      ..+..+..+++|+.|++++|++...
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            7777889999999999999998765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=2.4e-20  Score=167.44  Aligned_cols=223  Identities=23%  Similarity=0.258  Sum_probs=142.0

Q ss_pred             CccEEEcCCCCCcc--chh--HhhhCCCccEEEccCCcCCCCCchhhh-hcCCCCCEEEecCCccCCccc-----CCCCC
Q 042919          153 QLKALNLRNCSLQA--LPS--ILLQQLDLRFIDLSHNKLQGIFPSWLL-QNNTKLDTLYLLNNSLSGNFQ-----LPSSK  222 (428)
Q Consensus       153 ~L~~L~l~~~~~~~--l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-----~~~~~  222 (428)
                      .++.+.+.++.+..  +..  ....+++|++|++++|.+....+..++ ..+++|++|++++|.+.....     ....+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            47888888887632  211  123446799999999998877776654 678999999999999876322     12368


Q ss_pred             CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCC----CCccccCCCCCCEEECcCcccCCCCchh---hhcC
Q 042919          223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGR----IPSSMSEMKRLESLDLSSNNFSGELPRQ---FLSG  295 (428)
Q Consensus       223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~  295 (428)
                      ++|++|++++|.+....+..+.. +++|++|++++|.+.+.    ....+..+++|++|++++|.+. .++..   .+..
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRA-FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCC-CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHHHhcc-CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            89999999999997544444444 89999999999987531    1233467889999999999875 33322   3445


Q ss_pred             CCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcC---CCCcEEEccCCcccccCCcccCCCCCCcEE
Q 042919          296 CFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA---TSLLELDLSNNMLYGQIPPWFGNLSGLQFL  372 (428)
Q Consensus       296 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  372 (428)
                      +++|++|++++|.+...                      .+..+..+   ++|++|++++|+++ .+|..+.  ++|+.|
T Consensus       223 l~~L~~L~Ls~N~l~~~----------------------~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L  277 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRAT----------------------VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL  277 (310)
T ss_dssp             TCCCSSEECTTSCCCCC----------------------CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred             CCCCCEEECCCCCCCcc----------------------chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence            66666666666665543                      22222222   34555555555554 3343332  455555


Q ss_pred             eCCCCcCCcCCCCccccccCceEEccCCcCC
Q 042919          373 DISENQLCGSVPSSFNLSSLRRLYMHMNAFN  403 (428)
Q Consensus       373 ~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  403 (428)
                      ++++|++++.. ....+++|+.|++++|+++
T Consensus       278 ~Ls~N~l~~~~-~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          278 DLSSNRLNRAP-QPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             ECCSCCCCSCC-CTTSCCCCSCEECSSTTTS
T ss_pred             ECCCCcCCCCc-hhhhCCCccEEECcCCCCC
Confidence            55555555331 1124455555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=1.6e-19  Score=161.57  Aligned_cols=210  Identities=17%  Similarity=0.217  Sum_probs=171.5

Q ss_pred             EcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCcccc
Q 042919          158 NLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSC  237 (428)
Q Consensus       158 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  237 (428)
                      .+..+.+..+. ....+++|+.|+++++.+... + . +..+++|+.|++++|.+..... ...+++|++|++++|.+.+
T Consensus        25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l-~-~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-E-G-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCC-T-T-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred             HhCCCCcCcee-cHHHcCCcCEEEeeCCCccCc-h-h-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence            34444444432 234577999999999998754 3 2 4689999999999999987665 7789999999999999873


Q ss_pred             CCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCC
Q 042919          238 QLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN  317 (428)
Q Consensus       238 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  317 (428)
                       ++ .+.. +++|++|++++|.+.+. + .+..+++|++|++++|.+. .++.  +..+++|+.|++++|.+.+...+..
T Consensus       100 -~~-~~~~-l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~  171 (308)
T 1h6u_A          100 -VS-AIAG-LQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTPLAN  171 (308)
T ss_dssp             -CG-GGTT-CTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred             -ch-hhcC-CCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChhhcC
Confidence             33 3444 89999999999999854 3 4889999999999999987 4443  6789999999999999998777999


Q ss_pred             CCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCC
Q 042919          318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP  384 (428)
Q Consensus       318 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  384 (428)
                      +++|++|++++|.+++..+  +..+++|++|++++|.+++..  .+..+++|+.|++++|++++...
T Consensus       172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence            9999999999999986543  788999999999999998544  38999999999999999975433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=3.3e-20  Score=170.24  Aligned_cols=59  Identities=24%  Similarity=0.146  Sum_probs=39.1

Q ss_pred             EeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchh----hhhccCC-CCcEEeCCCCccCCc
Q 042919           59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQ----SVIANIK-SLEYLSLDDNNFEGL  117 (428)
Q Consensus        59 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~  117 (428)
                      ..++.+.+++..|..+...++|++|++++|.+....+    .++..++ +|++|++++|.+.+.
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~   66 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK   66 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH
Confidence            4566667766666665555667777777777665444    5666666 677777777766554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=6.8e-20  Score=158.04  Aligned_cols=179  Identities=16%  Similarity=0.173  Sum_probs=155.3

Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcc-cCCCCchhhhcCCCCCCEEeCCC-ccccccc--ccCCCCCcc
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN-FSGELPRQFLSGCFSLSFLSLSD-NHLQGEV--VFPNSTNLC  322 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~--~~~~~~~L~  322 (428)
                      .+++++|++++|.+....+..+..+++|++|++++|. +. .++...+..+++|+.|++++ |.+....  .+..+++|+
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            4689999999999987777789999999999999997 65 67766788999999999998 8887655  377899999


Q ss_pred             eeecccCccCccchhhhhcCCCCc---EEEccCC-cccccCCcccCCCCCCc-EEeCCCCcCCcCCCCccccccCceEEc
Q 042919          323 WLYLNNNHFSGKIQDGLSKATSLL---ELDLSNN-MLYGQIPPWFGNLSGLQ-FLDISENQLCGSVPSSFNLSSLRRLYM  397 (428)
Q Consensus       323 ~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~i~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~~~~~~L~~L~l  397 (428)
                      +|++++|.+++. +. +..+++|+   .|++++| .++...+..+.++++|+ .|++++|+++......+..++|+.|++
T Consensus       109 ~L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L  186 (239)
T 2xwt_C          109 FLGIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL  186 (239)
T ss_dssp             EEEEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred             EEeCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence            999999998863 33 78888888   9999999 99877777899999999 999999999866666665589999999


Q ss_pred             cCCc-CCccCCcccccC-CCCCEEECCCCccCC
Q 042919          398 HMNA-FNGSIPGALRRS-LSLTVLDLRDNEFSG  428 (428)
Q Consensus       398 ~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~  428 (428)
                      ++|+ +....+..|..+ ++|+.|++++|++++
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            9995 886777889999 999999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=6.5e-19  Score=148.43  Aligned_cols=179  Identities=23%  Similarity=0.285  Sum_probs=140.5

Q ss_pred             cEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCC
Q 042919          226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS  305 (428)
Q Consensus       226 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  305 (428)
                      +.++.+++.+. .++..+   .+++++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus        10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence            45555555554 444433   457888888888887666666778888888888888877 5666666778888888888


Q ss_pred             Ccccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919          306 DNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV  383 (428)
Q Consensus       306 ~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~  383 (428)
                      +|.+.....  +..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+  
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--  162 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--  162 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence            888776554  6788899999999998887777778889999999999999986666678889999999999997653  


Q ss_pred             CCccccccCceEEccCCcCCccCCcccccCCC
Q 042919          384 PSSFNLSSLRRLYMHMNAFNGSIPGALRRSLS  415 (428)
Q Consensus       384 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  415 (428)
                          .+++|+.|+++.|.+++.+|..++.++.
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence                4678999999999999889988887754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.1e-18  Score=154.80  Aligned_cols=171  Identities=24%  Similarity=0.287  Sum_probs=125.0

Q ss_pred             CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCC
Q 042919          221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS  300 (428)
Q Consensus       221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  300 (428)
                      .+++|+.|+++++.+. .++ .+.. +++|+.|++++|.+.+..+  +..+++|++|++++|.+. .++.  +..+++|+
T Consensus        44 ~l~~L~~L~l~~~~i~-~~~-~~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~  115 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIK-SVQ-GIQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLK  115 (291)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCC
T ss_pred             hcCcccEEEccCCCcc-cCh-hHhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCC
Confidence            5677888888888776 333 2333 7888888888888775433  778888888888888776 3333  66778888


Q ss_pred             EEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919          301 FLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       301 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      .|++++|.+.....+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            8888888877766677788888888888877754  567778888888888888874433  777888888888888877


Q ss_pred             cCCCCccccccCceEEccCCcCCc
Q 042919          381 GSVPSSFNLSSLRRLYMHMNAFNG  404 (428)
Q Consensus       381 ~~~~~~~~~~~L~~L~l~~~~~~~  404 (428)
                      +. +....+++|+.|++++|++..
T Consensus       192 ~l-~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          192 DL-RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             BC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred             CC-hhhccCCCCCEEECcCCcccC
Confidence            54 222267888888888887763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=7.7e-19  Score=146.51  Aligned_cols=154  Identities=19%  Similarity=0.214  Sum_probs=109.0

Q ss_pred             cCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEE
Q 042919          269 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL  348 (428)
Q Consensus       269 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  348 (428)
                      ..+++|++|++++|.+. .++  .+..+++|+.|++++|.+.....+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            45566666777666665 444  245666777777777766655566777788888888887776666677788888888


Q ss_pred             EccCCcccccCCcccCCCCCCcEEeCCCCc-CCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          349 DLSNNMLYGQIPPWFGNLSGLQFLDISENQ-LCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       349 ~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      ++++|.+++..+..++.+++|+.|++++|+ +++ .+....+++|+.|++++|++.. .+ .+..+++|+.|++++|+|+
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            888888876667778888888888888887 553 3332277888888888888874 33 6778888888888888876


Q ss_pred             C
Q 042919          428 G  428 (428)
Q Consensus       428 ~  428 (428)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=5.9e-18  Score=143.52  Aligned_cols=150  Identities=22%  Similarity=0.284  Sum_probs=75.1

Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeeccc
Q 042919          251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNN  328 (428)
Q Consensus       251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~  328 (428)
                      +.++++++.++. +|..+  .+.+++|++++|.+.+..+...+..+++|+.|++++|.+.....  +..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            466666666653 34333  23456666666665532233334455555555555555543332  44455555555555


Q ss_pred             CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCC
Q 042919          329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       329 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  403 (428)
                      |.++...+..|..+++|++|++++|.+++..|..+..+++|+.|+|++|++++..+..+ .+++|+.|++++|++.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            55544444444455555555555555544444445555555555555555544444444 4445555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=4.8e-18  Score=143.09  Aligned_cols=167  Identities=28%  Similarity=0.353  Sum_probs=136.6

Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeeccc
Q 042919          251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNN  328 (428)
Q Consensus       251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~  328 (428)
                      +.++..++.++. .|..+  .++|++|++++|.+. .++...+..+++|++|++++|.+.....  +..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            566777777663 34333  468999999999987 6666667889999999999999886654  67889999999999


Q ss_pred             CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCC
Q 042919          329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIP  407 (428)
Q Consensus       329 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~  407 (428)
                      |.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+ .+++|+.|++++|++.    
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence            99987777778889999999999999986666678899999999999999987776666 7899999999999876    


Q ss_pred             cccccCCCCCEEECCCCccCC
Q 042919          408 GALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       408 ~~~~~~~~L~~L~l~~~~~~~  428 (428)
                         +.++.|+.|++++|.++|
T Consensus       162 ---~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          162 ---CTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             ---CCTTTTHHHHHHHHHCTT
T ss_pred             ---cCCCCHHHHHHHHHhCCc
Confidence               456788888888887776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=9.2e-18  Score=148.80  Aligned_cols=189  Identities=23%  Similarity=0.242  Sum_probs=151.4

Q ss_pred             EEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCC
Q 042919          180 IDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENG  259 (428)
Q Consensus       180 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  259 (428)
                      +.+....+.+...   ...+++|+.|++++|.+.... ....+++|+.|++++|.+.+ ++. +. .+++|+.|++++|.
T Consensus        29 ~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~-~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           29 DNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENK  101 (291)
T ss_dssp             HHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSC
T ss_pred             HHhcCCCcccccc---hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCC-Ccc-cc-cCCCCCEEECCCCc
Confidence            3455555554332   246788999999999887653 35678999999999999874 333 44 48999999999999


Q ss_pred             CCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhh
Q 042919          260 FEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGL  339 (428)
Q Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  339 (428)
                      +.+  ...+..+++|++|++++|.+. .++  .+..+++|+.|++++|.+.....+..+++|++|++++|.+.+..+  +
T Consensus       102 l~~--~~~l~~l~~L~~L~L~~n~i~-~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l  174 (291)
T 1h6t_A          102 VKD--LSSLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--L  174 (291)
T ss_dssp             CCC--GGGGTTCTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCC--ChhhccCCCCCEEECCCCcCC-CCh--hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--h
Confidence            875  344889999999999999987 343  367899999999999999888778899999999999999986544  8


Q ss_pred             hcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCC
Q 042919          340 SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP  384 (428)
Q Consensus       340 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  384 (428)
                      ..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++....
T Consensus       175 ~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcc
Confidence            889999999999999984 44 48899999999999999876444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.1e-17  Score=162.31  Aligned_cols=171  Identities=24%  Similarity=0.284  Sum_probs=122.2

Q ss_pred             CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCC
Q 042919          221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS  300 (428)
Q Consensus       221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  300 (428)
                      .+++|+.|+++++.+. .++ .+.. +++|+.|++++|.+.+..+  +..+++|++|++++|.+. .++  .+..+++|+
T Consensus        41 ~L~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~  112 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIK-SVQ-GIQY-LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLK  112 (605)
T ss_dssp             HHTTCCCCBCTTCCCC-CCT-TGGG-CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT--TSTTCTTCC
T ss_pred             cCCCCCEEECcCCCCC-CCh-HHcc-CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh--hhccCCCCC
Confidence            4567777888887775 333 2333 7788888888887775433  777888888888888776 343  356777888


Q ss_pred             EEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919          301 FLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       301 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      .|++++|.+.....+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.++
T Consensus       113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            8888888777766677778888888888877754  567777888888888887774444  777788888888888777


Q ss_pred             cCCCCccccccCceEEccCCcCCc
Q 042919          381 GSVPSSFNLSSLRRLYMHMNAFNG  404 (428)
Q Consensus       381 ~~~~~~~~~~~L~~L~l~~~~~~~  404 (428)
                      +. +....+++|+.|+|++|++..
T Consensus       189 ~l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          189 DL-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             BC-GGGTTCTTCSEEECCSEEEEC
T ss_pred             CC-hHHccCCCCCEEEccCCcCcC
Confidence            54 322267788888888887763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=3.7e-17  Score=156.91  Aligned_cols=187  Identities=23%  Similarity=0.298  Sum_probs=116.6

Q ss_pred             CCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEEC
Q 042919          200 TKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL  279 (428)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  279 (428)
                      .+++.|+++++.+.+.+...  +++|+.|++++|.+. .++    ..+++|+.|++++|.++. +|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            37888888888877643322  367888888888776 555    226778888888877775 444 443  7778888


Q ss_pred             cCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccC
Q 042919          280 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI  359 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  359 (428)
                      ++|.+.+ ++.    .+++|+.|++++|.+.....  .+++|++|++++|.+++. +. +.  ++|+.|++++|.++ .+
T Consensus       128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          128 DNNQLTM-LPE----LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             CSSCCSC-CCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCCcCCC-CCC----cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCC-ch
Confidence            7777763 444    46677777777777665333  456677777777766642 22 33  66777777777666 44


Q ss_pred             CcccCCCCCC-------cEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCccccc
Q 042919          360 PPWFGNLSGL-------QFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR  412 (428)
Q Consensus       360 ~~~~~~~~~L-------~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  412 (428)
                      |. +..  +|       +.|+|++|+++..+.....+++|+.|++++|++++..|..++.
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            44 433  45       6666666666643332335666666666666666555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=2.7e-17  Score=139.50  Aligned_cols=148  Identities=21%  Similarity=0.285  Sum_probs=74.8

Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeeccc
Q 042919          251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNN  328 (428)
Q Consensus       251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~  328 (428)
                      +.+++.++.++ .+|..+.  +++++|++++|.+. .++...+..+++|+.|++++|.+....  .+..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            45566666555 2333332  45666666666655 344334455555555555555554332  244555555555555


Q ss_pred             CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcC
Q 042919          329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAF  402 (428)
Q Consensus       329 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  402 (428)
                      |.++......|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+ .+++|+.|++++|++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            55544444444445555555555555554444445555555555555555544444333 444555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=3.3e-17  Score=159.01  Aligned_cols=195  Identities=22%  Similarity=0.203  Sum_probs=158.8

Q ss_pred             ccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEcc
Q 042919          177 LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLS  256 (428)
Q Consensus       177 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  256 (428)
                      +..+.+..+.+.+...   ...+++|+.|.+++|.+.... ....+++|+.|++++|.+.+. +. +. .+++|+.|+++
T Consensus        23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~-~l~~L~~L~Ls   95 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LT-NLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCC-GG-GG-GCTTCCEEECC
T ss_pred             HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCC-hh-hc-cCCCCCEEECc
Confidence            3444555555554433   356789999999999887653 456789999999999998743 33 44 48999999999


Q ss_pred             CCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccch
Q 042919          257 ENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ  336 (428)
Q Consensus       257 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  336 (428)
                      +|.+...  ..+..+++|++|++++|.+. .++  .+..+++|+.|++++|.+.....+..+++|+.|+|++|.+.+..+
T Consensus        96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           96 ENKIKDL--SSLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SSCCCCC--TTSTTCTTCCEEECTTSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCCCC--hhhccCCCCCEEEecCCCCC-CCc--cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh
Confidence            9999753  36889999999999999987 443  367899999999999999988779999999999999999986655


Q ss_pred             hhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919          337 DGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF  387 (428)
Q Consensus       337 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  387 (428)
                        +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++......
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~  217 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ  217 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred             --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccc
Confidence              88999999999999999853  468999999999999999886554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=8.3e-17  Score=137.43  Aligned_cols=149  Identities=24%  Similarity=0.302  Sum_probs=99.8

Q ss_pred             CcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecc
Q 042919          250 LLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLN  327 (428)
Q Consensus       250 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~  327 (428)
                      -+.++.+++.+. ..|..+  .++|++|++++|.+. .+....+..+++|+.|++++|.+.....  +..+++|+.|+++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            456777777666 344433  367888888888776 3444446667777777777777765443  5667777777777


Q ss_pred             cCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCC
Q 042919          328 NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       328 ~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  403 (428)
                      +|.++...+..|..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+ .+++|+.|++++|++.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            77776655556666777777777777776 556666677777777777777765555545 5667777777777765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=1.3e-16  Score=145.41  Aligned_cols=199  Identities=19%  Similarity=0.128  Sum_probs=103.1

Q ss_pred             ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCccc--CCCCCCCccE-Eec
Q 042919          154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ--LPSSKHDLLR-LDI  230 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~-L~l  230 (428)
                      -++++.++++++++|..+  .+++++|++++|.++. ++...+..+++|++|++++|.+.....  ....++++.+ +.+
T Consensus        11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            356777778888888755  3478889998888873 444444677888888888877643211  2234444443 333


Q ss_pred             CCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCC-CCCCEEeCCCccc
Q 042919          231 SHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGC-FSLSFLSLSDNHL  309 (428)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~  309 (428)
                      ..+.+. .++...+..+++|++|++++|.+....+..+.....+..+++.++.-...++...+..+ ..++.|++++|.+
T Consensus        88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            344444 23222223355566666666555544333344444455555544321113333333333 2455555555555


Q ss_pred             ccccc-cCCCCCcceeeccc-CccCccchhhhhcCCCCcEEEccCCccc
Q 042919          310 QGEVV-FPNSTNLCWLYLNN-NHFSGKIQDGLSKATSLLELDLSNNMLY  356 (428)
Q Consensus       310 ~~~~~-~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~i~  356 (428)
                      ..... .....+|+++++.+ +.++.....+|..+++|+.|++++|+++
T Consensus       167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            43322 22334455555543 3333333344455555555555555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=1.4e-16  Score=145.20  Aligned_cols=238  Identities=18%  Similarity=0.222  Sum_probs=102.7

Q ss_pred             EEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE-ccC
Q 042919           58 ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK-LSN  136 (428)
Q Consensus        58 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~-l~~  136 (428)
                      +++-++++++ .+|..+  .+++++|++++++++...+.+|.++++|++|++++|++.+..+...+.+++++..+. +..
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4444444444 223322  235556666666555333345555666666666665554443334445555544322 222


Q ss_pred             Ccc-ccccCCCCCCCcCCccEEEcCCCCCccchhH-hhhCCCccEEEccCC-cCCCCCchhhhhcCCCCCEEEecCCccC
Q 042919          137 SLV-KIETEEFPGLPEYQLKALNLRNCSLQALPSI-LLQQLDLRFIDLSHN-KLQGIFPSWLLQNNTKLDTLYLLNNSLS  213 (428)
Q Consensus       137 ~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~  213 (428)
                      +.+ .+.+..|..++.  |+++++++|++..++.. +....++..+++.++ .+.......+......++.|++++|.++
T Consensus        90 N~l~~l~~~~f~~l~~--L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPN--LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             TTCCEECTTSBCCCTT--CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CcccccCchhhhhccc--cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            222 222333333332  55555555544444321 222334455555443 2221111112111233555555555554


Q ss_pred             CcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhh
Q 042919          214 GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFL  293 (428)
Q Consensus       214 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  293 (428)
                      ..........+++++++.+++....++...+..+++|++|++++|.++...+..   +.+|++|...++.-...+|.  +
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~--l  242 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT--L  242 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC--T
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC--c
Confidence            433333334455555554433222444444333555566666555555332222   33344444443332223332  3


Q ss_pred             cCCCCCCEEeCC
Q 042919          294 SGCFSLSFLSLS  305 (428)
Q Consensus       294 ~~~~~L~~L~l~  305 (428)
                      ..+++|+.+++.
T Consensus       243 ~~l~~L~~l~l~  254 (350)
T 4ay9_X          243 EKLVALMEASLT  254 (350)
T ss_dssp             TTCCSCCEEECS
T ss_pred             hhCcChhhCcCC
Confidence            345555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=4.5e-17  Score=149.15  Aligned_cols=174  Identities=24%  Similarity=0.196  Sum_probs=87.0

Q ss_pred             cEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCcccc-CCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeC
Q 042919          226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMS-EMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL  304 (428)
Q Consensus       226 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  304 (428)
                      +.++++++.+. .+|..+   .+.++.|++++|.++...+..+. .+++|++|++++|.+. .++...+..+++|+.|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence            45666666655 444433   34566666666666654444454 5666666666666655 333333445555555555


Q ss_pred             CCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCC
Q 042919          305 SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP  384 (428)
Q Consensus       305 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  384 (428)
                      ++|.+.                      ...+..|..+++|+.|++++|.++...+..|..+++|+.|+|++|.+++...
T Consensus        96 s~N~l~----------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  153 (361)
T 2xot_A           96 SSNHLH----------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV  153 (361)
T ss_dssp             CSSCCC----------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred             CCCcCC----------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence            555544                      3333344444445555555554444444444445555555555554443333


Q ss_pred             Ccc----ccccCceEEccCCcCCccCCcccccCCC--CCEEECCCCcc
Q 042919          385 SSF----NLSSLRRLYMHMNAFNGSIPGALRRSLS--LTVLDLRDNEF  426 (428)
Q Consensus       385 ~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~  426 (428)
                      ..+    .+++|+.|++++|++....+..+..++.  ++.|++++||+
T Consensus       154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            322    2445555555555554333334444443  24455555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.71  E-value=3.5e-16  Score=145.06  Aligned_cols=327  Identities=13%  Similarity=0.132  Sum_probs=196.7

Q ss_pred             HhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCc
Q 042919           72 PCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPE  151 (428)
Q Consensus        72 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  151 (428)
                      .+|.+|.+|+.+.+... ++.....+|.+|++|+.+++.++ +..+ ....+..+..|+.+.+..+...+...+|.... 
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~-  140 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMI-GRCTFSGCYALKSILLPLMLKSIGVEAFKGCD-  140 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCCCCCCTTCCEECTTTTTTCC-
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEc-cchhhcccccchhhcccCceeeecceeeeccc-
Confidence            44555555555555432 33333445555555555555433 2222 12345555555555555444444444444432 


Q ss_pred             CCccEEEcCCCCCccc-hhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEec
Q 042919          152 YQLKALNLRNCSLQAL-PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDI  230 (428)
Q Consensus       152 ~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  230 (428)
                        +....+... +..+ ..++..+++|+.+.+.++..  .+....+..+.+|+.+.+..+-..-.......+..|+.+.+
T Consensus       141 --~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          141 --FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             --CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCC
T ss_pred             --ccccccCcc-ccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCCceEeCchhhccccccceeec
Confidence              222222221 1112 23455666777777765432  23333446677777777765422222233445666666666


Q ss_pred             CCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccc
Q 042919          231 SHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ  310 (428)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (428)
                      ..+...  +...... ..+|+.+.+.... .......+..+..++.+.+..+..  .+....+..+..++.+......+ 
T Consensus       216 ~~~~~~--i~~~~~~-~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i-  288 (394)
T 4fs7_A          216 PNSLYY--LGDFALS-KTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV-  288 (394)
T ss_dssp             CTTCCE--ECTTTTT-TCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE-
T ss_pred             CCCceE--eehhhcc-cCCCceEEECCCc-eecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee-
Confidence            554321  1122222 5678888876543 224556677888888888876643  34455577788888887765543 


Q ss_pred             cccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-cc
Q 042919          311 GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NL  389 (428)
Q Consensus       311 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~  389 (428)
                      ....+..+.+|+.+.+..+ +......+|.++.+|+.+++.++ ++.....+|.+|.+|+.+.+..+ ++.....++ .|
T Consensus       289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  365 (394)
T 4fs7_A          289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC  365 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred             ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence            3445778889999988754 55566778889999999999754 65566778999999999999776 666777777 88


Q ss_pred             ccCceEEccCCcCCccCCcccccCCCCCEE
Q 042919          390 SSLRRLYMHMNAFNGSIPGALRRSLSLTVL  419 (428)
Q Consensus       390 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  419 (428)
                      .+|+.+++..+ +. ....+|..|++|+.+
T Consensus       366 ~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          366 INLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            99999999765 33 335678888888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.5e-17  Score=143.72  Aligned_cols=170  Identities=22%  Similarity=0.318  Sum_probs=137.7

Q ss_pred             CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCC
Q 042919          221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS  300 (428)
Q Consensus       221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  300 (428)
                      .+.++..++++.+.+. .++ .+.. +++|+.|++++|.+... + .+..+++|++|++++|.+. .++.  +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~-~~~-~~~~-l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-DLV-SQKE-LSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-SEE-CHHH-HTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCcc-ccc-chhh-cCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence            3456677788888776 333 3433 78999999999988743 3 6888999999999999987 4544  77899999


Q ss_pred             EEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919          301 FLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       301 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      .|++++|.+.....+.. ++|++|++++|.+++.  ..+..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus        89 ~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           89 ELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             EEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             EEECCCCccCCcCcccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence            99999999987666555 9999999999998864  4588899999999999999854 3 6888999999999999998


Q ss_pred             cCCCCcc-ccccCceEEccCCcCCcc
Q 042919          381 GSVPSSF-NLSSLRRLYMHMNAFNGS  405 (428)
Q Consensus       381 ~~~~~~~-~~~~L~~L~l~~~~~~~~  405 (428)
                      +.  ..+ .+++|+.|++++|++...
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ch--HHhccCCCCCEEeCCCCcccCC
Confidence            66  334 789999999999998743

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=1.9e-16  Score=151.94  Aligned_cols=184  Identities=22%  Similarity=0.257  Sum_probs=143.4

Q ss_pred             CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEc
Q 042919          176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNL  255 (428)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  255 (428)
                      +|+.|++++|.+.. ++..+   .++|+.|++++|.+...+   ..+++|+.|++++|.+++ ++. +.   .+|+.|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LP---ASLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hh---cCCCEEEC
Confidence            89999999998875 55433   378999999999888543   567899999999998884 665 42   38999999


Q ss_pred             cCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccc
Q 042919          256 SENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKI  335 (428)
Q Consensus       256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  335 (428)
                      ++|.+++ .|.   .+++|++|++++|.+. .++.    .+++|+.|++++|.+.....+.  ++|+.|++++|.++.. 
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~l-  195 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESL-  195 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSC-
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCch-
Confidence            9998885 444   6788999999999887 4554    4789999999999888755533  8999999999988743 


Q ss_pred             hhhhhcCCCC-------cEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919          336 QDGLSKATSL-------LELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF  387 (428)
Q Consensus       336 ~~~l~~~~~L-------~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  387 (428)
                      +. +..  +|       +.|++++|.++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            33 433  66       99999999998 678878789999999999999987766655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=1.7e-16  Score=132.20  Aligned_cols=149  Identities=15%  Similarity=0.201  Sum_probs=117.0

Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc--ccccCCCCCccee
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWL  324 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L  324 (428)
                      +++|+.|++++|.+.. .+ .+..+++|++|++++|.+. ..+  .+..+++|+.|++++|.+..  ...+..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            6678888888887773 33 5778888888888888654 333  36678888888888888876  3447888999999


Q ss_pred             ecccCccCccchhhhhcCCCCcEEEccCCc-ccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCC
Q 042919          325 YLNNNHFSGKIQDGLSKATSLLELDLSNNM-LYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFN  403 (428)
Q Consensus       325 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  403 (428)
                      ++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|++++.. ....+++|+.|++++|++.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            999999987778888999999999999997 76 444 6888999999999999988644 2227899999999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=3.7e-16  Score=132.41  Aligned_cols=154  Identities=20%  Similarity=0.273  Sum_probs=125.8

Q ss_pred             ccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEe
Q 042919          225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIP-SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS  303 (428)
Q Consensus       225 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  303 (428)
                      -+.++++++.++ .+|..+   .+.++.|++++|.+....+ ..+..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus        13 ~~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEE
Confidence            457888888887 566654   4567899999998875533 45788899999999999887 55555678889999999


Q ss_pred             CCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919          304 LSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       304 l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~  381 (428)
                      +++|.+.....  +..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..|..+..+++|+.|++++|++..
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            99998887654  7888999999999999888778888889999999999999987778888999999999999998875


Q ss_pred             CC
Q 042919          382 SV  383 (428)
Q Consensus       382 ~~  383 (428)
                      ..
T Consensus       168 ~c  169 (220)
T 2v70_A          168 NC  169 (220)
T ss_dssp             SG
T ss_pred             CC
Confidence            43

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=4.3e-16  Score=132.04  Aligned_cols=152  Identities=25%  Similarity=0.295  Sum_probs=127.3

Q ss_pred             ccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeC
Q 042919          225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL  304 (428)
Q Consensus       225 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  304 (428)
                      -+.++.+++.+. .+|..+   .++++.|++++|.+....+..+..+++|++|++++|.+. .+....+.++++|+.|++
T Consensus        13 ~~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L   87 (220)
T 2v9t_B           13 NNIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVL   87 (220)
T ss_dssp             TTEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEEC
T ss_pred             CCEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEEC
Confidence            357888888776 566554   468999999999988767778889999999999999887 454455788899999999


Q ss_pred             CCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919          305 SDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       305 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~  381 (428)
                      ++|.+.....  +..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus        88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9999886654  6788999999999999988888888899999999999999987777778889999999999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1.6e-16  Score=145.55  Aligned_cols=175  Identities=28%  Similarity=0.219  Sum_probs=133.6

Q ss_pred             CEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCc
Q 042919          203 DTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN  282 (428)
Q Consensus       203 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (428)
                      +.++.+++.+...+..  -...++.|++++|.++...+..+...+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            5788888877765432  23568999999999984444434325899999999999999777788999999999999999


Q ss_pred             ccCCCCchhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeecccCccCccchhhh---hcCCCCcEEEccCCcccc
Q 042919          283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGL---SKATSLLELDLSNNMLYG  357 (428)
Q Consensus       283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~i~~  357 (428)
                      .+. .++...+..+++|+.|++++|.+....  .+..+++|++|++++|.+.......+   ..+++|+.|++++|.++.
T Consensus        99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            987 666666788899999999998887653  37778888888888888876555555   557888888888888875


Q ss_pred             cCCcccCCCCC--CcEEeCCCCcCC
Q 042919          358 QIPPWFGNLSG--LQFLDISENQLC  380 (428)
Q Consensus       358 ~~~~~~~~~~~--L~~L~L~~~~~~  380 (428)
                      ..+..+..++.  ++.|+|++|++.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            44456666665  377888888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=3e-16  Score=136.84  Aligned_cols=171  Identities=20%  Similarity=0.228  Sum_probs=140.1

Q ss_pred             CCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEEC
Q 042919          200 TKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL  279 (428)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  279 (428)
                      .++..++++++.+.... ....+++|+.|++++|.+. .++ .+.. +++|++|++++|.+.+..+  +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            34555667777766543 3457889999999999987 454 4444 8999999999999986544  889999999999


Q ss_pred             cCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccC
Q 042919          280 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI  359 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  359 (428)
                      ++|.+. .++..  .. ++|+.|++++|.+.....+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++. 
T Consensus        93 ~~N~l~-~l~~~--~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           93 NRNRLK-NLNGI--PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             CSSCCS-CCTTC--CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCCccC-CcCcc--cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch-
Confidence            999987 45432  23 89999999999999887799999999999999999865  3688899999999999999855 


Q ss_pred             CcccCCCCCCcEEeCCCCcCCcCCC
Q 042919          360 PPWFGNLSGLQFLDISENQLCGSVP  384 (428)
Q Consensus       360 ~~~~~~~~~L~~L~L~~~~~~~~~~  384 (428)
                       ..+..+++|+.|++++|+++....
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             -HHhccCCCCCEEeCCCCcccCCcc
Confidence             678899999999999999886543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=3.1e-16  Score=141.73  Aligned_cols=196  Identities=13%  Similarity=0.088  Sum_probs=135.4

Q ss_pred             CCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCccc---CCCCchhhhcCCCC
Q 042919          222 KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF---SGELPRQFLSGCFS  298 (428)
Q Consensus       222 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~~  298 (428)
                      +++|+++++.+ .+. .+....+..|++|+.+++.++.+....+.+|..+.++.++.......   ...+....|..+..
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            66777777766 554 44444444477777777777766655666666666666665544211   01122223334444


Q ss_pred             CC-EEeCCCcccccc-------------------------c-c-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEc
Q 042919          299 LS-FLSLSDNHLQGE-------------------------V-V-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL  350 (428)
Q Consensus       299 L~-~L~l~~~~~~~~-------------------------~-~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  350 (428)
                      |+ .+.+........                         . . ...+++|+++++.+|.++.....+|.++.+|+.+++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence            44 222221110000                         0 0 113789999999999898888889999999999999


Q ss_pred             cCCcccccCCcccCCCCCCc-EEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEEC
Q 042919          351 SNNMLYGQIPPWFGNLSGLQ-FLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDL  421 (428)
Q Consensus       351 ~~~~i~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  421 (428)
                      .++ ++...+.+|.+|++|+ .+++.+ .++.....++ .|++|+.|++.+|.+..+-+.+|..|++|+.++.
T Consensus       258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            987 7767778899999999 999988 7777777888 8999999999999999788889999999999874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=2.3e-15  Score=128.40  Aligned_cols=154  Identities=22%  Similarity=0.270  Sum_probs=128.6

Q ss_pred             CccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEe
Q 042919          224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS  303 (428)
Q Consensus       224 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  303 (428)
                      ..+.++.+++.+. .+|..+   .++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence            4566777777766 566544   478999999999998777888889999999999999986 67766678889999999


Q ss_pred             CCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919          304 LSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       304 l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~  381 (428)
                      +++|.+.....  +..+++|++|++++|.+. ..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            99998887654  678999999999999988 456677899999999999999996666778999999999999999875


Q ss_pred             CC
Q 042919          382 SV  383 (428)
Q Consensus       382 ~~  383 (428)
                      ..
T Consensus       174 ~c  175 (229)
T 3e6j_A          174 EC  175 (229)
T ss_dssp             TB
T ss_pred             Cc
Confidence            54

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=2.4e-15  Score=124.53  Aligned_cols=109  Identities=29%  Similarity=0.385  Sum_probs=60.3

Q ss_pred             CcceeecccCccCccchh-hhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEc
Q 042919          320 NLCWLYLNNNHFSGKIQD-GLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYM  397 (428)
Q Consensus       320 ~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l  397 (428)
                      ++++|++++|.+....+. .+..+++|++|++++|.+++..|..+.++++|+.|+|++|++++..+..+ .+++|+.|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            444555555544433332 24555555666665555554455555555566666666665555555444 5556666666


Q ss_pred             cCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          398 HMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      ++|++++..|..+..+++|+.|++++|+++|
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            6666655555555556666666666665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=1.6e-14  Score=133.89  Aligned_cols=333  Identities=15%  Similarity=0.173  Sum_probs=227.0

Q ss_pred             ceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCcccc
Q 042919           41 PLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSF  120 (428)
Q Consensus        41 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  120 (428)
                      +++.+-..+|.+|.+|+++.|.. .++.....+|.+|++|+.+++..+ ++.....+|.++++|+.+.+..+ +..+ ..
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i-~~  133 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSI-GV  133 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE-CT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeee-cc
Confidence            35556667899999999999964 466566678999999999999865 55556778999999999887754 3322 22


Q ss_pred             ccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccch-hHhhhCCCccEEEccCCcCCCCCchhhhhcC
Q 042919          121 NSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP-SILLQQLDLRFIDLSHNKLQGIFPSWLLQNN  199 (428)
Q Consensus       121 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  199 (428)
                      ..+..+.. ..+........+...+|.....  |+.+.+.++. ..++ ..+..+++|+.+.+..+ +. .+....+..+
T Consensus       134 ~aF~~~~~-~~~~~~~~~~~i~~~aF~~c~~--L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~  207 (394)
T 4fs7_A          134 EAFKGCDF-KEITIPEGVTVIGDEAFATCES--LEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC  207 (394)
T ss_dssp             TTTTTCCC-SEEECCTTCCEECTTTTTTCTT--CCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred             eeeecccc-cccccCccccccchhhhcccCC--CcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence            34555543 3333434444555566666554  8888887643 3443 45566778888888765 33 2333345678


Q ss_pred             CCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEEC
Q 042919          200 TKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL  279 (428)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  279 (428)
                      ..|+.+.+..+.... .........|+.+.+.....  .+....+..+..++.+.+..+... .....+..+..++.+..
T Consensus       208 ~~L~~i~~~~~~~~i-~~~~~~~~~l~~i~ip~~~~--~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~  283 (394)
T 4fs7_A          208 ILLENMEFPNSLYYL-GDFALSKTGVKNIIIPDSFT--ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIY  283 (394)
T ss_dssp             TTCCBCCCCTTCCEE-CTTTTTTCCCCEEEECTTCC--EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEE
T ss_pred             cccceeecCCCceEe-ehhhcccCCCceEEECCCce--ecccccccccccceeEEcCCCcce-eeccccccccccceecc
Confidence            888887776554321 12233456788887765432  233334444888999998876443 55667888899998887


Q ss_pred             cCcccCCCCchhhhcCCCCCCEEeCCCc-ccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccccc
Q 042919          280 SSNNFSGELPRQFLSGCFSLSFLSLSDN-HLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ  358 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~  358 (428)
                      ....    ++...+..+.+|+.+.+..+ ...+..++..|.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++..
T Consensus       284 ~~~~----i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I  357 (394)
T 4fs7_A          284 GSVI----VPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI  357 (394)
T ss_dssp             CSSE----ECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred             Ccee----eccccccccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence            7654    34455778899999988654 2224455889999999999743 66667788999999999999876 6656


Q ss_pred             CCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceE
Q 042919          359 IPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRL  395 (428)
Q Consensus       359 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L  395 (428)
                      ...+|.+|++|+.+++..+ +... ...+ .|++|+.+
T Consensus       358 ~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          358 GANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred             hHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence            6778999999999999764 3322 2344 77887765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.63  E-value=3.6e-14  Score=130.94  Aligned_cols=267  Identities=11%  Similarity=0.094  Sum_probs=116.5

Q ss_pred             CCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEE
Q 042919          126 HSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTL  205 (428)
Q Consensus       126 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  205 (428)
                      +..++.+.+.+.-..+...+|...   +|+.+.+..+ +..++...+.-.+|+.+.+.. .+.... ...+..|.+|+.+
T Consensus       112 ~~~l~~i~ip~~i~~I~~~aF~~~---~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~-~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPNSVKSIPKDAFRNS---QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLK-EDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCTTCCEECTTTTTTC---CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEEC-SSTTTTCTTCCEE
T ss_pred             cCCccEEEECCccCEehHhhcccC---CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEeh-HHHhhCcccCCee
Confidence            345555555554444555555432   2555555543 444443333333555555554 232222 2223455555555


Q ss_pred             EecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccC
Q 042919          206 YLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS  285 (428)
Q Consensus       206 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  285 (428)
                      .++.+.+.........+.+|+.+.+..+ +. .+....+..+++|+.+++..+ +......+|.+ .+|+++.+.++ +.
T Consensus       186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred             ecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-cc
Confidence            5555444332222222334444444322 21 222222223444555544432 22223333333 34444444221 21


Q ss_pred             CCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCC
Q 042919          286 GELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGN  365 (428)
Q Consensus       286 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~  365 (428)
                       .++...|.+|++|+.+.+.++.+..                 +........+|..+++|+.+.+.+ .++.....+|.+
T Consensus       261 -~I~~~aF~~c~~L~~l~l~~~~~~~-----------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~  321 (401)
T 4fdw_A          261 -NIASRAFYYCPELAEVTTYGSTFND-----------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG  321 (401)
T ss_dssp             -EECTTTTTTCTTCCEEEEESSCCCC-----------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT
T ss_pred             -EEChhHhhCCCCCCEEEeCCccccC-----------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC
Confidence             2333334444444444443332210                 000123344555555555555553 244344455555


Q ss_pred             CCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCC-CCCEEECCCC
Q 042919          366 LSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSL-SLTVLDLRDN  424 (428)
Q Consensus       366 ~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~  424 (428)
                      |++|+.+.|..+ ++.....++ .| +|+.+++.+|......+..|..++ .++.|++..+
T Consensus       322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            556666655433 444444444 44 566666666555544445555553 5555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=1.1e-14  Score=119.00  Aligned_cols=109  Identities=26%  Similarity=0.311  Sum_probs=52.5

Q ss_pred             CCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEc
Q 042919          319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYM  397 (428)
Q Consensus       319 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l  397 (428)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+ .+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            344444444444443333344445555555555555543333344455555555555555554444333 4455555555


Q ss_pred             cCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          398 HMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      ++|.+....+..+..+++|+.|++++|+++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            555554333333444555555555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=5.7e-14  Score=129.61  Aligned_cols=236  Identities=14%  Similarity=0.139  Sum_probs=150.0

Q ss_pred             ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCC
Q 042919          154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN  233 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (428)
                      ++.+.+.+ .+..++...+.-.+|+.+.+..+ +......+| .+ .+|+.+.+...                       
T Consensus       115 l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF-~~-~~L~~i~lp~~-----------------------  167 (401)
T 4fdw_A          115 YNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAF-FN-STVQEIVFPST-----------------------  167 (401)
T ss_dssp             CSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTT-TT-CCCCEEECCTT-----------------------
T ss_pred             ccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhc-CC-CCceEEEeCCC-----------------------
Confidence            66666654 34555443333346777776654 332332233 23 24666555431                       


Q ss_pred             ccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcc-cccc
Q 042919          234 KFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNH-LQGE  312 (428)
Q Consensus       234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~  312 (428)
                       +. .+....+..|++|+.+++..+.+.......|. +.+|+++.+..+ +. .+...+|.++++|+.+.+..+- ..+.
T Consensus       168 -l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~  242 (401)
T 4fdw_A          168 -LE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQ  242 (401)
T ss_dssp             -CC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTCCEECT
T ss_pred             -cc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCccCccc
Confidence             11 22222333356666666666555544444444 456666666543 22 4555556666666666665431 1122


Q ss_pred             cccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccc-----ccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919          313 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY-----GQIPPWFGNLSGLQFLDISENQLCGSVPSSF  387 (428)
Q Consensus       313 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  387 (428)
                      .++.. .+|+.+.+. +.+......+|.++++|+.+.+.++.+.     .....+|.+|++|+.+.+.. .++......+
T Consensus       243 ~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF  319 (401)
T 4fdw_A          243 EAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL  319 (401)
T ss_dssp             TTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred             ccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence            33444 578888884 4456566778889999999999877654     35677899999999999994 5777777778


Q ss_pred             -ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCcc
Q 042919          388 -NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       388 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  426 (428)
                       .|.+|+.+++..+ ++.+.+.+|..| +|+.+++.+|.+
T Consensus       320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence             8999999999665 666788899999 999999999864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=1.9e-15  Score=122.45  Aligned_cols=131  Identities=24%  Similarity=0.180  Sum_probs=69.2

Q ss_pred             CCCCEEECcCcccC-CCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEc
Q 042919          272 KRLESLDLSSNNFS-GELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL  350 (428)
Q Consensus       272 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  350 (428)
                      ++|++|++++|.+. +.++.. +..+++|+.|++++|.+.....+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            55666666666654 233322 3455566666666665555444555555666666555555444444444555555555


Q ss_pred             cCCcccccC-CcccCCCCCCcEEeCCCCcCCcCCC---Ccc-ccccCceEEccCCcCC
Q 042919          351 SNNMLYGQI-PPWFGNLSGLQFLDISENQLCGSVP---SSF-NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       351 ~~~~i~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~---~~~-~~~~L~~L~l~~~~~~  403 (428)
                      ++|.+++.. +..+..+++|+.|++++|++++..+   ..+ .+++|+.|++++|.+.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            555555321 1445555555555555555554333   122 4555555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.58  E-value=3.6e-13  Score=124.79  Aligned_cols=335  Identities=12%  Similarity=0.119  Sum_probs=156.9

Q ss_pred             ceeeeecccccCCC-CCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCc---cCcchhhhhccCCCCcEEeCCCCccCC
Q 042919           41 PLTVFVNTGICELK-NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ---LTGNLQSVIANIKSLEYLSLDDNNFEG  116 (428)
Q Consensus        41 ~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~  116 (428)
                      +++.+-..+|.+++ .|+++.+-. .++.+...+|.+|.+|+.+.+..+.   ++.....+|..+.+|+.+.+..+ +..
T Consensus        50 ~Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           50 PVSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             EEEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             eeeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence            34455556677774 478887753 3554556677788888888776542   44445567777777777766553 332


Q ss_pred             ccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhh
Q 042919          117 LFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLL  196 (428)
Q Consensus       117 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  196 (428)
                      + ....+..+.+|+.+.+......+....|.....  |+.+.+.++ +..+....+....|+.+.+...-.. .. ...+
T Consensus       128 I-~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~--L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~-~~af  201 (394)
T 4gt6_A          128 I-DSEAFHHCEELDTVTIPEGVTSVADGMFSYCYS--LHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IG-TNAF  201 (394)
T ss_dssp             E-CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTT--CCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-EC-TTTT
T ss_pred             e-hhhhhhhhcccccccccceeeeecccceecccc--cccccccce-eeEeccccccccceeEEEECCcccc-cc-cchh
Confidence            2 224566777777777766655655666655544  666666543 4445444444556666665543211 11 1122


Q ss_pred             hcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCE
Q 042919          197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES  276 (428)
Q Consensus       197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  276 (428)
                      ..+..++.................          ..+... ............+..+.+... +......+|..+..|++
T Consensus       202 ~~c~~l~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~  269 (394)
T 4gt6_A          202 SECFALSTITSDSESYPAIDNVLY----------EKSANG-DYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLAS  269 (394)
T ss_dssp             TTCTTCCEEEECCSSSCBSSSCEE----------EECTTS-CEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCE
T ss_pred             hhccccceecccccccccccceee----------cccccc-cccccccccccccceEEcCCc-ceEcccceeeecccccE
Confidence            345555555443322211100000          000000 000000000112223332221 11122334445555555


Q ss_pred             EECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccc
Q 042919          277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY  356 (428)
Q Consensus       277 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  356 (428)
                      +.+.....  .+....                      +..+.+|+.+.+. ..+......+|.++.+|+.+.+..+ ++
T Consensus       270 i~lp~~~~--~I~~~a----------------------F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~  323 (394)
T 4gt6_A          270 VKMPDSVV--SIGTGA----------------------FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT  323 (394)
T ss_dssp             EECCTTCC--EECTTT----------------------TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred             Eecccccc--eecCcc----------------------cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc
Confidence            55433221  223333                      4444555555543 2233344445555566666655432 33


Q ss_pred             ccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCc
Q 042919          357 GQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       357 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  425 (428)
                      .....+|.+|.+|+.+.|-.+ ++.....++ .|.+|+.+++.++...   ...+..+..|+.+.+..+.
T Consensus       324 ~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          324 QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence            334445666666666666433 444444445 5566666666655432   1334555566666655443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=3.5e-17  Score=157.89  Aligned_cols=196  Identities=18%  Similarity=0.166  Sum_probs=133.2

Q ss_pred             CCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCC-------------CCCCCCccccCCCCCCEEE-CcCcccC
Q 042919          220 SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENG-------------FEGRIPSSMSEMKRLESLD-LSSNNFS  285 (428)
Q Consensus       220 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~  285 (428)
                      ..+++|+.|+++++.+. .+|..+.. +++|+.|+++++.             ..+..+..+..+++|++|+ ++.+.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            34566667777777665 55655555 6667777665442             2234455666677777777 4444322


Q ss_pred             CCCchhh-----hc--CCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccccc
Q 042919          286 GELPRQF-----LS--GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ  358 (428)
Q Consensus       286 ~~~~~~~-----~~--~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~  358 (428)
                       .+....     +.  ....|+.|++++|.+...+.+..+++|+.|++++|.++ ..+..+..+++|+.|++++|.+++ 
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence             111100     00  12358888888888877666778888888888888887 556678888888888888888874 


Q ss_pred             CCcccCCCCCCcEEeCCCCcCCcCC-CCcc-ccccCceEEccCCcCCccCCc---ccccCCCCCEEEC
Q 042919          359 IPPWFGNLSGLQFLDISENQLCGSV-PSSF-NLSSLRRLYMHMNAFNGSIPG---ALRRSLSLTVLDL  421 (428)
Q Consensus       359 ~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l  421 (428)
                      +| .+.++++|+.|+|++|.+++.. +..+ .+++|+.|++++|++.+..|.   .+..+|+|+.|++
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            55 7888888888888888888765 6666 788888888888888754332   2345788888864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=6.9e-15  Score=132.90  Aligned_cols=259  Identities=15%  Similarity=0.197  Sum_probs=129.7

Q ss_pred             CCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhcc--------CCCCcEEeCCCCccCCcccccccc
Q 042919           53 LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN--------IKSLEYLSLDDNNFEGLFSFNSLK  124 (428)
Q Consensus        53 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~  124 (428)
                      +++|++|+|+++.+...... -..++.++.+.+..+.+   ...+|.+        |++|+.+++++ .+..+ +...+.
T Consensus        48 l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I-~~~aF~  121 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNI-EDAAFK  121 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEE-CTTTTT
T ss_pred             hccCeEEecCcceeEEecCc-ccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccch-hHHHhh
Confidence            78899999999987711000 01111223333333322   2334455        66666666665 44443 224556


Q ss_pred             CCCCCcEEEccCCcc-ccccCCCCCCCcCCccEEEcCCCC----Cccc-hhHhhhCCCcc-EEEccCCcCCCCCchhhhh
Q 042919          125 NHSKLQVFKLSNSLV-KIETEEFPGLPEYQLKALNLRNCS----LQAL-PSILLQQLDLR-FIDLSHNKLQGIFPSWLLQ  197 (428)
Q Consensus       125 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~----~~~l-~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~  197 (428)
                      +|++|+.++++++.. .+...+|....  ++..+......    ...+ ...+..+..|+ .+.+....   ..+..++.
T Consensus       122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~--~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~  196 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPNLLPEALADSV--TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMK  196 (329)
T ss_dssp             TCTTCCEEEBCCSSCCEECTTSSCTTT--CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHH
T ss_pred             cCcccceEEcCCCCccccchhhhcCCC--ceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhh
Confidence            666666666665543 44444444422  24444333311    0111 11223344444 33333211   11111111


Q ss_pred             ---cCCCCCEEEecCCccCCcccCC-CCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCC
Q 042919          198 ---NNTKLDTLYLLNNSLSGNFQLP-SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKR  273 (428)
Q Consensus       198 ---~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  273 (428)
                         ...+++.+.+.+.-........ ..+++|+.+++.++.+. .++...+..+++|+++++.++ +..+...+|.++++
T Consensus       197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~  274 (329)
T 3sb4_A          197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR  274 (329)
T ss_dssp             TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh
Confidence               1233444444433211110000 12456666666666655 455555555777777777766 55456666777777


Q ss_pred             CC-EEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeec
Q 042919          274 LE-SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYL  326 (428)
Q Consensus       274 L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l  326 (428)
                      |+ ++.+.+ .+. .++...|.+|++|+.+++..+.+....  +|.++++|+.++.
T Consensus       275 L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          275 LAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            77 777766 443 556666777777777777666665433  3777777777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=4.2e-14  Score=117.01  Aligned_cols=106  Identities=32%  Similarity=0.380  Sum_probs=56.9

Q ss_pred             CcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEcc
Q 042919          320 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMH  398 (428)
Q Consensus       320 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~  398 (428)
                      +|++|++++|.++. .+..|..+++|+.|++++|.+++..+..|.++++|+.|+|++|.+++..+..+ .+++|+.|+++
T Consensus        32 ~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            44455555554442 22445555555555555555554444455555555555555555555554444 45555555555


Q ss_pred             CCcCCccCCcccccCCCCCEEECCCCcc
Q 042919          399 MNAFNGSIPGALRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       399 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~  426 (428)
                      +|.+....+..|..+++|+.|++++|++
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            5555544444455555556666655554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.4e-14  Score=117.26  Aligned_cols=128  Identities=23%  Similarity=0.214  Sum_probs=65.4

Q ss_pred             CCCCEEeCCCcccc--cccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEe
Q 042919          297 FSLSFLSLSDNHLQ--GEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD  373 (428)
Q Consensus       297 ~~L~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  373 (428)
                      +.|+.|++++|.+.  .... +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555554  2221 34455555555555555433  4445555555555555555543444444455555555


Q ss_pred             CCCCcCCcCCC-Ccc-ccccCceEEccCCcCCccCC---cccccCCCCCEEECCCCcc
Q 042919          374 ISENQLCGSVP-SSF-NLSSLRRLYMHMNAFNGSIP---GALRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       374 L~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~  426 (428)
                      +++|++++... ..+ .+++|+.|++++|++....+   ..+..+++|+.|++++|++
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            55555554321 222 45555555555555553322   2455555555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=7.2e-15  Score=116.48  Aligned_cols=125  Identities=20%  Similarity=0.168  Sum_probs=84.6

Q ss_pred             CCCCEEeCCCcccc--cccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEe
Q 042919          297 FSLSFLSLSDNHLQ--GEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD  373 (428)
Q Consensus       297 ~~L~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  373 (428)
                      ++++.|++++|.+.  .... +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666655  2222 45667777777777776654  5566777777777777777755666666677788888


Q ss_pred             CCCCcCCcCC-CCcc-ccccCceEEccCCcCCccCC---cccccCCCCCEEECCC
Q 042919          374 ISENQLCGSV-PSSF-NLSSLRRLYMHMNAFNGSIP---GALRRSLSLTVLDLRD  423 (428)
Q Consensus       374 L~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~  423 (428)
                      +++|++++.. +..+ .+++|+.|++++|++....+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888776532 2334 67788888888888775444   4677788888888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=2.3e-14  Score=118.62  Aligned_cols=111  Identities=21%  Similarity=0.233  Sum_probs=66.0

Q ss_pred             CCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEc
Q 042919          273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL  350 (428)
Q Consensus       273 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  350 (428)
                      ++++|++++|.+.+..+...+..+++|+.|++++|.+....  .+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            44444444444432111122344445555555555444332  2455666666666666666655666777777777777


Q ss_pred             cCCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919          351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV  383 (428)
Q Consensus       351 ~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~  383 (428)
                      ++|.+++..|..+..+++|+.|++++|++.+..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            777777666777777777888888887776543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=8.2e-15  Score=119.62  Aligned_cols=133  Identities=21%  Similarity=0.200  Sum_probs=76.6

Q ss_pred             ccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcE
Q 042919          268 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE  347 (428)
Q Consensus       268 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  347 (428)
                      +..+++|++|++++|.+. .++. .....++|+.|++++|.+.....+..+++|++|++++|.+++..+..+..+++|+.
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            445667777777777766 3332 22223367777777776665544666666666666666665444344456666666


Q ss_pred             EEccCCcccccCCc--ccCCCCCCcEEeCCCCcCCcCCCC---cc-ccccCceEEccCCcCC
Q 042919          348 LDLSNNMLYGQIPP--WFGNLSGLQFLDISENQLCGSVPS---SF-NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       348 L~l~~~~i~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~---~~-~~~~L~~L~l~~~~~~  403 (428)
                      |++++|.++ .+|.  .+..+++|+.|++++|+++.....   .+ .+++|+.|++++|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            666666665 3333  455666666666666666533221   12 5566666666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=8.5e-17  Score=155.17  Aligned_cols=175  Identities=22%  Similarity=0.225  Sum_probs=140.5

Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcc-------------cCCCCchhhhcCCCCCCEEe-CCCcccccc
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN-------------FSGELPRQFLSGCFSLSFLS-LSDNHLQGE  312 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~L~~L~-l~~~~~~~~  312 (428)
                      +++|+.|++++|.+. .+|..++++++|+.|++.+|.             .. ......+..+++|+.|+ ++.+.+...
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchh
Confidence            678999999999887 678889999999999987764             22 22333456677777777 454433221


Q ss_pred             cc-------cC--CCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919          313 VV-------FP--NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV  383 (428)
Q Consensus       313 ~~-------~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~  383 (428)
                      ..       +.  ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..++++++|+.|+|++|.+++. 
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-  501 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-
Confidence            11       11  123599999999999864 44 899999999999999999 8899999999999999999999964 


Q ss_pred             CCcc-ccccCceEEccCCcCCccC-CcccccCCCCCEEECCCCccCC
Q 042919          384 PSSF-NLSSLRRLYMHMNAFNGSI-PGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       384 ~~~~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      + .+ .+++|+.|++++|.+++.. |..++.+++|+.|++++|+++|
T Consensus       502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            4 45 8999999999999999766 9999999999999999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=3.2e-14  Score=112.73  Aligned_cols=126  Identities=22%  Similarity=0.235  Sum_probs=72.7

Q ss_pred             CCCcEEEccCCCCC-CCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeec
Q 042919          248 PELLSLNLSENGFE-GRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  326 (428)
Q Consensus       248 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  326 (428)
                      ++++.|++++|.+. +..+..+..+++|++|++++|.+.                         ....+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~~l~~L~~L~L   71 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-------------------------SIANLPKLNKLKKLEL   71 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-------------------------CCTTCCCCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-------------------------CchhhhcCCCCCEEEC
Confidence            45666666666655 334445555556666666555554                         3323445555566666


Q ss_pred             ccCccCccchhhhhcCCCCcEEEccCCccccc-CCcccCCCCCCcEEeCCCCcCCcCCC---Ccc-ccccCceEEcc
Q 042919          327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPPWFGNLSGLQFLDISENQLCGSVP---SSF-NLSSLRRLYMH  398 (428)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~---~~~-~~~~L~~L~l~  398 (428)
                      ++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++++..+   ..+ .+++|+.|+++
T Consensus        72 s~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66665544555555566666666666666632 23556666677777777776665444   233 56666666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.48  E-value=3.3e-13  Score=111.55  Aligned_cols=126  Identities=27%  Similarity=0.318  Sum_probs=96.4

Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeeccc
Q 042919          251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNN  328 (428)
Q Consensus       251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~  328 (428)
                      +.++++++.+. ..|..+  .++|++|++++|.+. .++ ..+..+++|+.|++++|.+.....  +..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            57888888877 345443  367899999998887 666 456788888888888888876554  77788888888888


Q ss_pred             CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919          329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       329 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~  381 (428)
                      |.++...+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            88877777778888888888888888875555567778888888888887653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.48  E-value=8.4e-12  Score=115.57  Aligned_cols=309  Identities=14%  Similarity=0.186  Sum_probs=182.5

Q ss_pred             eeeeecccccCCCCCcEEeccCCc---CCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCcc
Q 042919           42 LTVFVNTGICELKNLVELDLSKNN---LYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF  118 (428)
Q Consensus        42 ~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  118 (428)
                      ++.+-..+|.+|.+|+++.+..+.   ++.....+|..+.+|+.+.+... ++.....+|..+.+|+.+.+... +..+ 
T Consensus        75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I-  151 (394)
T 4gt6_A           75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSV-  151 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEE-
T ss_pred             eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeee-
Confidence            344556779999999999998653   55455678999999999888765 45456678999999999999864 3333 


Q ss_pred             ccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhc
Q 042919          119 SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQN  198 (428)
Q Consensus       119 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  198 (428)
                      ....+..+..|+.+.+..+...+...+|...   +|+.+.+...-..--...+..+..++............ ...++..
T Consensus       152 ~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~---~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~-~~~~~~~  227 (394)
T 4gt6_A          152 ADGMFSYCYSLHTVTLPDSVTAIEERAFTGT---ALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI-DNVLYEK  227 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTTCCEECTTTTTTC---CCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS-SSCEEEE
T ss_pred             cccceecccccccccccceeeEecccccccc---ceeEEEECCcccccccchhhhccccceecccccccccc-cceeecc
Confidence            3357889999999999988778877777653   49999998754433345667777888887765543321 1111111


Q ss_pred             CCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEE
Q 042919          199 NTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLD  278 (428)
Q Consensus       199 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  278 (428)
                      ..........          ......+..+.+... +. .+....+..+..|+.+.+...... .....+.+++.|+.+.
T Consensus       228 ~~~~~~~~~~----------~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~  294 (394)
T 4gt6_A          228 SANGDYALIR----------YPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIE  294 (394)
T ss_dssp             CTTSCEEEEE----------CCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEE
T ss_pred             cccccccccc----------cccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCccccccccccccc
Confidence            1111111111          011122333333221 11 222233444788999988765443 5667788899999999


Q ss_pred             CcCcccCCCCchhhhcCCCCCCEEeCCCc-ccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccc
Q 042919          279 LSSNNFSGELPRQFLSGCFSLSFLSLSDN-HLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG  357 (428)
Q Consensus       279 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~  357 (428)
                      +... +. .++...|.+|.+|+.+.+..+ ...+..+|.+|.+|+++.+..+ ++.....+|.+|.+|+.+++.++....
T Consensus       295 l~~~-i~-~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~  371 (394)
T 4gt6_A          295 FSSR-IT-ELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW  371 (394)
T ss_dssp             CCTT-CC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred             CCCc-cc-ccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh
Confidence            8643 33 566667777777777777543 1112333555555555555432 333444555555555555555443220


Q ss_pred             cCCcccCCCCCCcEEeCCC
Q 042919          358 QIPPWFGNLSGLQFLDISE  376 (428)
Q Consensus       358 ~~~~~~~~~~~L~~L~L~~  376 (428)
                         ..+..+..|+.+.+..
T Consensus       372 ---~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          372 ---NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             ---HTCBCCCCC-------
T ss_pred             ---hhhhccCCCCEEEeCC
Confidence               2334444455554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.47  E-value=6.6e-13  Score=108.39  Aligned_cols=128  Identities=27%  Similarity=0.331  Sum_probs=74.8

Q ss_pred             CcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecc
Q 042919          250 LLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLN  327 (428)
Q Consensus       250 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~  327 (428)
                      .+.++++++.+.. .|..+  .++|++|++++|.+. .++...+..+++|+.|++++|.+.....  +..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4566677666653 33222  356777777777765 4444445566666666666666654433  4556666666666


Q ss_pred             cCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919          328 NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       328 ~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~  381 (428)
                      +|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            666655555555556666666666666654434444556666666666665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.5e-13  Score=112.14  Aligned_cols=128  Identities=17%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             CCCCCCEEeCCCcccccccccCCCC-CcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEe
Q 042919          295 GCFSLSFLSLSDNHLQGEVVFPNST-NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD  373 (428)
Q Consensus       295 ~~~~L~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  373 (428)
                      .+.+|+.|++++|.+.....+..+. +|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            4556666666666655443333333 666666666665543  4455566666666666666533333345566666666


Q ss_pred             CCCCcCCcCCC-Ccc-ccccCceEEccCCcCCccCCc----ccccCCCCCEEECCCCc
Q 042919          374 ISENQLCGSVP-SSF-NLSSLRRLYMHMNAFNGSIPG----ALRRSLSLTVLDLRDNE  425 (428)
Q Consensus       374 L~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~  425 (428)
                      +++|++++... ..+ .+++|+.|++++|++. ..|.    .+..+++|+.||+++|+
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            66666543222 122 5566666666666665 3333    25566666666666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=9.4e-13  Score=106.49  Aligned_cols=103  Identities=27%  Similarity=0.319  Sum_probs=47.3

Q ss_pred             CEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919          300 SFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL  379 (428)
Q Consensus       300 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~  379 (428)
                      +.++++++.+..... .-.++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++
T Consensus        12 ~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           12 TTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            445555554443222 1124445555555554444444444445555555555554433333344445555555555554


Q ss_pred             CcCCCCcc-ccccCceEEccCCcCC
Q 042919          380 CGSVPSSF-NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       380 ~~~~~~~~-~~~~L~~L~l~~~~~~  403 (428)
                      ++..+..+ .+++|+.|++++|++.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            44433333 4444555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=6.2e-14  Score=139.48  Aligned_cols=120  Identities=26%  Similarity=0.271  Sum_probs=69.4

Q ss_pred             CCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcC
Q 042919          264 IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKA  342 (428)
Q Consensus       264 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~  342 (428)
                      .+..+..++.|+.|++++|.+. .++...+ .++.|+.|++++|.+..... +..+++|+.|+|++|.++ ..+..+..+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3444555666666666666655 4544433 56666666666666653322 556666666666666666 345556666


Q ss_pred             CCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919          343 TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF  387 (428)
Q Consensus       343 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  387 (428)
                      ++|+.|+|++|.++ .+|..|..+++|+.|+|++|++++..+..+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            66666666666665 556566666666667776666665544443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=4.1e-13  Score=133.62  Aligned_cols=175  Identities=23%  Similarity=0.286  Sum_probs=70.5

Q ss_pred             CCCcEEEccCCCCCCCCCccccCCCCCCEEECcC-----cccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCc
Q 042919          248 PELLSLNLSENGFEGRIPSSMSEMKRLESLDLSS-----NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNL  321 (428)
Q Consensus       248 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L  321 (428)
                      +.++.|++.++.+.. .+..+.....|..+.+..     +.+.  .+...+..+..|+.|++++|.+..... +..+++|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL  249 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence            456777777666653 222222222222222221     1111  223334555666666666666553332 3455566


Q ss_pred             ceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCC
Q 042919          322 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMN  400 (428)
Q Consensus       322 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~  400 (428)
                      ++|+|++|.++ ..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++. .+..+ .+++|+.|+|++|
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTS
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCC
Confidence            66666666555 34445555666666666666665 455556666666666666665552 23334 5566666666666


Q ss_pred             cCCccCCcccccCC-CCCEEECCCCccCC
Q 042919          401 AFNGSIPGALRRSL-SLTVLDLRDNEFSG  428 (428)
Q Consensus       401 ~~~~~~~~~~~~~~-~L~~L~l~~~~~~~  428 (428)
                      ++.+..|..+..+. .+..+++++|.++|
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccC
Confidence            66555554443321 11224455554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=1.5e-15  Score=126.51  Aligned_cols=111  Identities=27%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             cccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCC
Q 042919          267 SMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSL  345 (428)
Q Consensus       267 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  345 (428)
                      .+..+++|++|++++|.+. .++  .+..+++|+.|++++|.+..... +..+++|++|++++|.+++. + .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-S-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence            5666677777777777665 344  34556666666666666553322 23345566666666555532 1 34555555


Q ss_pred             cEEEccCCcccccCC-cccCCCCCCcEEeCCCCcCCcC
Q 042919          346 LELDLSNNMLYGQIP-PWFGNLSGLQFLDISENQLCGS  382 (428)
Q Consensus       346 ~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~~~~~~~  382 (428)
                      +.|++++|.+++..+ ..+..+++|+.|++++|++.+.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            555555555542211 2455555555555555555433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=3.3e-12  Score=103.63  Aligned_cols=103  Identities=24%  Similarity=0.322  Sum_probs=56.0

Q ss_pred             CEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919          300 SFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL  379 (428)
Q Consensus       300 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~  379 (428)
                      +.++++++.+...+. .-.++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..|.++++|+.|+|++|++
T Consensus        15 ~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            455555555543322 1125566666666665555555555566666666666665543333445556666666666665


Q ss_pred             CcCCCCcc-ccccCceEEccCCcCC
Q 042919          380 CGSVPSSF-NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       380 ~~~~~~~~-~~~~L~~L~l~~~~~~  403 (428)
                      ++..+..+ .+++|+.|++++|++.
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ceeCHHHhccccCCCEEEeCCCCcc
Confidence            54444434 4556666666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=1.3e-14  Score=132.61  Aligned_cols=133  Identities=22%  Similarity=0.239  Sum_probs=67.3

Q ss_pred             CCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc------c-CCCCCcceeecccCccCccc----hhhhh
Q 042919          272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV------F-PNSTNLCWLYLNNNHFSGKI----QDGLS  340 (428)
Q Consensus       272 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------~-~~~~~L~~L~l~~~~~~~~~----~~~l~  340 (428)
                      ++|++|++++|.+.+.........+++|+.|++++|.+.+...      + ...++|++|++++|.+++..    ...+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            4555555555554322222222233455555555555543322      1 23455666666666654322    22234


Q ss_pred             cCCCCcEEEccCCccccc----CCcccCCCCCCcEEeCCCCcCCcCCCCcc-----ccccCceEEccCCcCCc
Q 042919          341 KATSLLELDLSNNMLYGQ----IPPWFGNLSGLQFLDISENQLCGSVPSSF-----NLSSLRRLYMHMNAFNG  404 (428)
Q Consensus       341 ~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~  404 (428)
                      .+++|++|++++|.+++.    ++..+..+++|+.|+|++|.+++.....+     .+++|++|++++|++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            556666666666665532    23344555566666666666654333222     34566666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=3.5e-14  Score=129.78  Aligned_cols=157  Identities=21%  Similarity=0.206  Sum_probs=117.1

Q ss_pred             CCCCCEEECcCcccCCCCchh---hhc-CCCCCCEEeCCCcccccccc---cCCCCCcceeecccCccCccchhhh----
Q 042919          271 MKRLESLDLSSNNFSGELPRQ---FLS-GCFSLSFLSLSDNHLQGEVV---FPNSTNLCWLYLNNNHFSGKIQDGL----  339 (428)
Q Consensus       271 ~~~L~~L~l~~~~~~~~~~~~---~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l----  339 (428)
                      ++.|++|++++|.++......   .+. ....|+.|++++|.+.+...   ...+++|++|++++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            356777777777765222111   111 23699999999999876443   3346789999999999986655554    


Q ss_pred             -hcCCCCcEEEccCCccccc----CCcccCCCCCCcEEeCCCCcCCcCCC----Ccc-ccccCceEEccCCcCCcc----
Q 042919          340 -SKATSLLELDLSNNMLYGQ----IPPWFGNLSGLQFLDISENQLCGSVP----SSF-NLSSLRRLYMHMNAFNGS----  405 (428)
Q Consensus       340 -~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~-~~~~L~~L~l~~~~~~~~----  405 (428)
                       ...++|++|++++|.+++.    ++..+..+++|++|+|++|.+++...    ..+ .+++|+.|++++|.++..    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2468999999999998753    34455778999999999999886543    223 567999999999999753    


Q ss_pred             CCcccccCCCCCEEECCCCccC
Q 042919          406 IPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       406 ~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      ++..+..+++|+.|++++|+|+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            3455667899999999999986

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.35  E-value=1e-10  Score=107.71  Aligned_cols=136  Identities=14%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCc-ccccccccCCCCCcceee
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN-HLQGEVVFPNSTNLCWLY  325 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~  325 (428)
                      +.+++.+.+..+ +.......+..+..|+.+.+..+ +. .+....+..+..|+.+.+..+ ......++..|.+|+.+.
T Consensus       216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEE
T ss_pred             ccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhccccccccceecccccccccccccccc
Confidence            556666666543 22234455666677777776544 22 344555666667777666432 111233466667777777


Q ss_pred             cccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919          326 LNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF  387 (428)
Q Consensus       326 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  387 (428)
                      +.++.++.....+|.++.+|+.+.+..+ ++.....+|.+|++|+.+.+..+ ++.+...++
T Consensus       293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF  352 (379)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence            7666666555666777777777777543 44344556777777777766543 444444444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.34  E-value=1.2e-10  Score=107.33  Aligned_cols=316  Identities=13%  Similarity=0.085  Sum_probs=181.8

Q ss_pred             hhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCC
Q 042919           74 LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ  153 (428)
Q Consensus        74 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  153 (428)
                      +....+|+.+.+... ++.....+|.+|.+|+.+++..+ ++.+. ...+..+ +|+.+.+..+-..+...+|...   +
T Consensus        42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig-~~aF~~c-~l~~i~~~~~l~~I~~~aF~~~---~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIG-DGAFADT-KLQSYTGMERVKKFGDYVFQGT---D  114 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEEC-TTTTTTC-CCCEEEECTTCCEECTTTTTTC---C
T ss_pred             cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEec-hhhhcCC-CCceEECCceeeEeccceeccC---C
Confidence            334455666655543 33344455666666666666543 33221 1334444 4555555444334444444432   3


Q ss_pred             ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCC
Q 042919          154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN  233 (428)
Q Consensus       154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (428)
                      |+.+.+.++ +..+....+...+++.+.+..+ +.... ...+..+..++.+.+...............        .. 
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~-~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~-  182 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIK-DGIGYKAENLEKIEVSSNNKNYVAENYVLY--------NK-  182 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CCEEC-SCTTTTCTTCCEEEECTTCSSEEEETTEEE--------ET-
T ss_pred             cccccCCCc-cccccccccccceeeeeeccce-eeccc-cchhcccccccccccccccceeecccceec--------cc-
Confidence            666666543 2333333333334555554432 11111 112345566666655443321110000000        00 


Q ss_pred             ccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcc-cccc
Q 042919          234 KFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNH-LQGE  312 (428)
Q Consensus       234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~  312 (428)
                        ....... +..+..+..+.+...... .....+..+..|+.+.+..+- . .+....+.++..|+.+.+..+- ..+.
T Consensus       183 --~~~~~~~-~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~v~~I~~  256 (379)
T 4h09_A          183 --NKTILES-YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKNVTSIGS  256 (379)
T ss_dssp             --TSSEEEE-CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTTCCEECT
T ss_pred             --ccceecc-ccccccccccccccceeE-Eeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCCccEeCc
Confidence              0000111 112445666665544322 345566778889999886552 2 4556667789999999986641 2234


Q ss_pred             cccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-cccc
Q 042919          313 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSS  391 (428)
Q Consensus       313 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~  391 (428)
                      .++..+.+|+.+.+... +......+|..+.+|+.+.+.++.++.....+|.+|.+|+.+.|..+ ++.....++ .|.+
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  334 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA  334 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence            45888999999999654 55566778999999999999988887667789999999999999754 666667777 8899


Q ss_pred             CceEEccCCcCCccCCcccccCCCCC
Q 042919          392 LRRLYMHMNAFNGSIPGALRRSLSLT  417 (428)
Q Consensus       392 L~~L~l~~~~~~~~~~~~~~~~~~L~  417 (428)
                      |+.+.+..+ ++.+...+|..|+.++
T Consensus       335 L~~i~ip~~-v~~I~~~aF~~c~~~~  359 (379)
T 4h09_A          335 LSTISYPKS-ITLIESGAFEGSSITK  359 (379)
T ss_dssp             CCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred             CCEEEECCc-cCEEchhHhhCCCCCc
Confidence            999999765 6556777888775443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=4.6e-14  Score=117.53  Aligned_cols=133  Identities=27%  Similarity=0.273  Sum_probs=101.9

Q ss_pred             hhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCc
Q 042919          242 NMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNL  321 (428)
Q Consensus       242 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L  321 (428)
                      .+.. +++|++|++++|.+.. .+ .+..+++|++|++++|.+. .++. .+..+++|+.|++++|.+.....+..+++|
T Consensus        43 ~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L  117 (198)
T 1ds9_A           43 TLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIASLSGIEKLVNL  117 (198)
T ss_dssp             HHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHHHHHCSEEEEEEEECCCHHHHHHHHHS
T ss_pred             HHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhcCCcCCEEECcCCcCCcCCccccCCCC
Confidence            4544 7889999998888875 44 7788888999999988887 5554 345567899999998888876667788899


Q ss_pred             ceeecccCccCccch-hhhhcCCCCcEEEccCCcccccCCc----------ccCCCCCCcEEeCCCCcCCc
Q 042919          322 CWLYLNNNHFSGKIQ-DGLSKATSLLELDLSNNMLYGQIPP----------WFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       322 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~----------~~~~~~~L~~L~L~~~~~~~  381 (428)
                      ++|++++|.+++... ..+..+++|+.|++++|.+.+..|.          .+..+++|+.|+  +++++.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            999999998875443 5688899999999999988655443          267788888886  666653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.26  E-value=4.6e-11  Score=96.50  Aligned_cols=106  Identities=25%  Similarity=0.241  Sum_probs=79.0

Q ss_pred             CCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEcc
Q 042919          274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS  351 (428)
Q Consensus       274 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  351 (428)
                      .++++++++.+. .+|...   .+.++.|++++|.+.....  +..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            467888887776 565433   3678888888888776543  7778888888888888877666677788888888888


Q ss_pred             CCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919          352 NNMLYGQIPPWFGNLSGLQFLDISENQLCGSV  383 (428)
Q Consensus       352 ~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~  383 (428)
                      +|.++...+..+..+++|+.|+|++|++....
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            88887555556778888888888888776443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.23  E-value=9.9e-11  Score=94.84  Aligned_cols=106  Identities=23%  Similarity=0.238  Sum_probs=84.3

Q ss_pred             CCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEcc
Q 042919          274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS  351 (428)
Q Consensus       274 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  351 (428)
                      -+.++++++.+. .+|...   .+.|+.|++++|.+.....  +..+++|++|++++|.++......|..+++|+.|+++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            367888888876 666543   3788899999998887644  7788899999999998887766777888899999999


Q ss_pred             CCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919          352 NNMLYGQIPPWFGNLSGLQFLDISENQLCGSV  383 (428)
Q Consensus       352 ~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~  383 (428)
                      +|.++...+..+..+++|+.|+|++|++....
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            99888555556888899999999999887543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.12  E-value=7.3e-11  Score=106.84  Aligned_cols=179  Identities=17%  Similarity=0.162  Sum_probs=85.9

Q ss_pred             CCCccEEecCCCcccc-CC---C---chhhhcCCCCcEEEccCCCCCC---------CCCccccCCCCCCEEECcCcccC
Q 042919          222 KHDLLRLDISHNKFSC-QL---P---GNMGKILPELLSLNLSENGFEG---------RIPSSMSEMKRLESLDLSSNNFS  285 (428)
Q Consensus       222 ~~~L~~L~l~~~~~~~-~~---~---~~~~~~~~~L~~L~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~  285 (428)
                      ...++.|.+..+...+ ..   .   ......+++|+.|.+.......         .+...+..+|+|++|.++++.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3456677777554321 11   0   0112236788888876532210         12233455667777777665211


Q ss_pred             CCCchhhhcCCCCCCEEeCCCcccccccc----cCCCCCcceeecccC--cc-Cc----cchhhh--hcCCCCcEEEccC
Q 042919          286 GELPRQFLSGCFSLSFLSLSDNHLQGEVV----FPNSTNLCWLYLNNN--HF-SG----KIQDGL--SKATSLLELDLSN  352 (428)
Q Consensus       286 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~--~~-~~----~~~~~l--~~~~~L~~L~l~~  352 (428)
                       .++.  + ..++|+.|++..|.+.....    ...+|+|++|+|+.+  .. .+    .....+  ..+++|+.|++.+
T Consensus       186 -~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~  261 (362)
T 2ra8_A          186 -SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD  261 (362)
T ss_dssp             -BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred             -eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence             1221  1 25666666666665543322    235666666666421  11 10    001112  1356666666666


Q ss_pred             CcccccCCccc---CCCCCCcEEeCCCCcCCcCCCCcc-----ccccCceEEccCCcCCc
Q 042919          353 NMLYGQIPPWF---GNLSGLQFLDISENQLCGSVPSSF-----NLSSLRRLYMHMNAFNG  404 (428)
Q Consensus       353 ~~i~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~  404 (428)
                      |.+++..+..+   ..+++|+.|+|++|.+.+.....+     .+++|+.|++++|.++.
T Consensus       262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            66543222111   135566666666666554322111     35666666666666553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=6.4e-10  Score=101.09  Aligned_cols=102  Identities=24%  Similarity=0.204  Sum_probs=68.3

Q ss_pred             EeCCCc-ccccccccCCCCCcceeeccc-CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919          302 LSLSDN-HLQGEVVFPNSTNLCWLYLNN-NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL  379 (428)
Q Consensus       302 L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~  379 (428)
                      ++.+++ .+...+.+..+++|++|+|++ |.+....+..|..+++|+.|+|++|.+++..+..|.++++|+.|+|++|++
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            455555 555443456666777777775 777666666677777777777777777766666777777777777777777


Q ss_pred             CcCCCCccccccCceEEccCCcCC
Q 042919          380 CGSVPSSFNLSSLRRLYMHMNAFN  403 (428)
Q Consensus       380 ~~~~~~~~~~~~L~~L~l~~~~~~  403 (428)
                      ++..+..+....|+.|++.+|++.
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeCHHHcccCCceEEEeeCCCcc
Confidence            765555553233777777777765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.95  E-value=3.2e-09  Score=96.44  Aligned_cols=104  Identities=26%  Similarity=0.199  Sum_probs=87.0

Q ss_pred             CEEECcCc-ccCCCCchhhhcCCCCCCEEeCCC-cccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEc
Q 042919          275 ESLDLSSN-NFSGELPRQFLSGCFSLSFLSLSD-NHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL  350 (428)
Q Consensus       275 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  350 (428)
                      ..++++++ .+. .+|.  +..+.+|+.|++++ |.+.....  +..+++|+.|+|++|.+.+..+..|.++++|+.|+|
T Consensus        11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            35688777 676 6776  77888999999996 88887654  889999999999999999888888999999999999


Q ss_pred             cCCcccccCCcccCCCCCCcEEeCCCCcCCcC
Q 042919          351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGS  382 (428)
Q Consensus       351 ~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~  382 (428)
                      ++|.++...+..+..++ |+.|+|++|++...
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            99999865555666665 99999999998743

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.90  E-value=3e-09  Score=96.24  Aligned_cols=188  Identities=14%  Similarity=0.038  Sum_probs=88.3

Q ss_pred             hHhhhCCCccEEEccCCcCCC--------CCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCC
Q 042919          169 SILLQQLDLRFIDLSHNKLQG--------IFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLP  240 (428)
Q Consensus       169 ~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  240 (428)
                      ....++++|+.|.+.+.....        .....++..+++|+.|.++++.......  ...++|+.|++..+.+.....
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHH
Confidence            335567788888886543211        1122344567778888877652111111  124566666665555433222


Q ss_pred             chhhh-cCCCCcEEEccCC--C-CCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--
Q 042919          241 GNMGK-ILPELLSLNLSEN--G-FEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--  314 (428)
Q Consensus       241 ~~~~~-~~~~L~~L~l~~~--~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--  314 (428)
                      ..++. .+|+|+.|++..+  . ..+.....+.                   +......+++|+.|++.+|.+.+...  
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-------------------GGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHH-------------------HHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            22221 2555666655321  0 0000000000                   00000124555555555555443211  


Q ss_pred             ---cCCCCCcceeecccCccCccchhh----hhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCc
Q 042919          315 ---FPNSTNLCWLYLNNNHFSGKIQDG----LSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ  378 (428)
Q Consensus       315 ---~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~  378 (428)
                         ...+++|++|+++.|.+.+.....    +.++++|+.|++++|.+++.....+...- ...+++++++
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred             HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence               124566777777766665543222    23457777777777776644333333200 2446666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.76  E-value=1.3e-09  Score=89.14  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             hhcCCCCCCEEeCCCc-ccccccc------cCCCCCcceeecccCccCccch----hhhhcCCCCcEEEccCCccccc--
Q 042919          292 FLSGCFSLSFLSLSDN-HLQGEVV------FPNSTNLCWLYLNNNHFSGKIQ----DGLSKATSLLELDLSNNMLYGQ--  358 (428)
Q Consensus       292 ~~~~~~~L~~L~l~~~-~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~--  358 (428)
                      .+...+.|++|++++| .+.+...      +...++|++|++++|.+.+...    ..+...++|++|+|++|.|++.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3445667777777776 6654322      4555667777777776654332    2334446666666666666532  


Q ss_pred             --CCcccCCCCCCcEEeC--CCCcCCcCCCCcc-----ccccCceEEccCCcC
Q 042919          359 --IPPWFGNLSGLQFLDI--SENQLCGSVPSSF-----NLSSLRRLYMHMNAF  402 (428)
Q Consensus       359 --~~~~~~~~~~L~~L~L--~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~  402 (428)
                        +...+...++|+.|+|  ++|.+.+.....+     ..++|++|++++|.+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence              2334455556666666  5565554332222     335555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.72  E-value=4.6e-09  Score=85.86  Aligned_cols=84  Identities=20%  Similarity=0.174  Sum_probs=36.8

Q ss_pred             CCCCCEEeCCCcccccccc------cCCCCCcceeecccCccCccc----hhhhhcCCCCcEEEc--cCCccccc----C
Q 042919          296 CFSLSFLSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKI----QDGLSKATSLLELDL--SNNMLYGQ----I  359 (428)
Q Consensus       296 ~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l--~~~~i~~~----~  359 (428)
                      .+.|++|++++|.+.+...      +...++|++|++++|.+.+..    ..++...++|++|++  ++|.+++.    +
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            3455555555555443221      233344555555555544332    223334445555555  44444432    1


Q ss_pred             CcccCCCCCCcEEeCCCCcC
Q 042919          360 PPWFGNLSGLQFLDISENQL  379 (428)
Q Consensus       360 ~~~~~~~~~L~~L~L~~~~~  379 (428)
                      ...+...++|++|+|++|.+
T Consensus       144 ~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          144 ANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCCCcCEEeccCCCC
Confidence            22233334555555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.61  E-value=4.1e-09  Score=83.80  Aligned_cols=84  Identities=7%  Similarity=0.020  Sum_probs=62.8

Q ss_pred             CCcceeecccCccCccchhhhhcCCCCcEEEccCCc-ccccCCcccCCC----CCCcEEeCCCCc-CCcCCCCcc-cccc
Q 042919          319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM-LYGQIPPWFGNL----SGLQFLDISENQ-LCGSVPSSF-NLSS  391 (428)
Q Consensus       319 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~----~~L~~L~L~~~~-~~~~~~~~~-~~~~  391 (428)
                      ..|++|++++|.+++.....+..+++|++|+|++|. +++.....++.+    ++|+.|+|++|. +++.....+ .+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468888888888887777778888888888888884 776555555553    468888888884 776555555 6788


Q ss_pred             CceEEccCCcC
Q 042919          392 LRRLYMHMNAF  402 (428)
Q Consensus       392 L~~L~l~~~~~  402 (428)
                      |++|++++|+-
T Consensus       141 L~~L~L~~c~~  151 (176)
T 3e4g_A          141 LKYLFLSDLPG  151 (176)
T ss_dssp             CCEEEEESCTT
T ss_pred             CCEEECCCCCC
Confidence            88888888863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.40  E-value=2.1e-07  Score=73.94  Aligned_cols=85  Identities=11%  Similarity=0.125  Sum_probs=66.2

Q ss_pred             CCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCc-cCcchhhhhccC----CCCcEEeCCCCc-cCCccccccccCC
Q 042919           53 LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ-LTGNLQSVIANI----KSLEYLSLDDNN-FEGLFSFNSLKNH  126 (428)
Q Consensus        53 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~  126 (428)
                      -.+|++|++++|.+++.....+..+++|++|+|++|. ++......++.+    ++|++|++++|. +++. ....+.++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~  138 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHF  138 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGC
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcC
Confidence            3579999999999987777778899999999999994 776666666664    479999999985 5544 33566778


Q ss_pred             CCCcEEEccCCc
Q 042919          127 SKLQVFKLSNSL  138 (428)
Q Consensus       127 ~~L~~L~l~~~~  138 (428)
                      ++|++|++++|.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            888888887764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=2.1e-07  Score=79.79  Aligned_cols=80  Identities=26%  Similarity=0.356  Sum_probs=60.3

Q ss_pred             hcCCCCcEEEccCCcccc--cCCcccCCCCCCcEEeCCCCcCCcCCCCccccc--cCceEEccCCcCCccCC-------c
Q 042919          340 SKATSLLELDLSNNMLYG--QIPPWFGNLSGLQFLDISENQLCGSVPSSFNLS--SLRRLYMHMNAFNGSIP-------G  408 (428)
Q Consensus       340 ~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~-------~  408 (428)
                      .++++|+.|+|++|.+++  .++..+..+++|+.|+|++|++.+... .-.+.  +|++|++++|++.+..|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            567889999999998875  344566788999999999998886521 11233  89999999999876554       2


Q ss_pred             ccccCCCCCEEE
Q 042919          409 ALRRSLSLTVLD  420 (428)
Q Consensus       409 ~~~~~~~L~~L~  420 (428)
                      .+..+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            467889999887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.95  E-value=7e-06  Score=70.37  Aligned_cols=64  Identities=23%  Similarity=0.385  Sum_probs=34.2

Q ss_pred             cCCCCCEEEccCCccCc--chhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccc
Q 042919           76 NLTHIKVLDLSSNQLTG--NLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVK  140 (428)
Q Consensus        76 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  140 (428)
                      ++++|+.|+|++|.+..  ..+..+..+++|+.|++++|.+.++.....+..+ +|+.|.+++|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            45566666666665553  2234445566666666666665555333333333 5666666655543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.84  E-value=5e-06  Score=67.38  Aligned_cols=82  Identities=15%  Similarity=0.094  Sum_probs=40.6

Q ss_pred             CCCCCCEEeCCCc-ccccccc------cCCCCCcceeecccCccCccch----hhhhcCCCCcEEEccCCccccc----C
Q 042919          295 GCFSLSFLSLSDN-HLQGEVV------FPNSTNLCWLYLNNNHFSGKIQ----DGLSKATSLLELDLSNNMLYGQ----I  359 (428)
Q Consensus       295 ~~~~L~~L~l~~~-~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~----~  359 (428)
                      .-+.|+.|+++++ .+.+...      +..-+.|++|+|++|.+.+...    +++...++|++|+|++|.|++.    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3456666666653 5443221      4444556666666665554322    2333445566666666655432    2


Q ss_pred             CcccCCCCCCcEEeCCC
Q 042919          360 PPWFGNLSGLQFLDISE  376 (428)
Q Consensus       360 ~~~~~~~~~L~~L~L~~  376 (428)
                      ...+...+.|+.|+|++
T Consensus       119 a~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHTTTTCCCSEEECCC
T ss_pred             HHHHhhCCceeEEECCC
Confidence            22333444555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.74  E-value=1.9e-05  Score=63.95  Aligned_cols=56  Identities=16%  Similarity=0.229  Sum_probs=24.0

Q ss_pred             CCCCEEeCCCcccccccc------cCCCCCcceeecccCccCccch----hhhhcCCCCcEEEccC
Q 042919          297 FSLSFLSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKIQ----DGLSKATSLLELDLSN  352 (428)
Q Consensus       297 ~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~  352 (428)
                      ..|+.|++++|.+.+..+      +..-+.|++|+|++|.+.+...    +++...++|++|+|++
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            345555555554443322      2233445555555554443322    2233334455555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.85  E-value=0.0027  Score=47.81  Aligned_cols=56  Identities=21%  Similarity=0.261  Sum_probs=38.9

Q ss_pred             cEEEccCCccc-ccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCC
Q 042919          346 LELDLSNNMLY-GQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       346 ~~L~l~~~~i~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  403 (428)
                      ..++.++++++ ..+|..+.  ++|+.|+|++|+++......+ .+++|+.|+|.+|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777775 24453332  368888888888887666666 6778888888888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.27  E-value=0.011  Score=44.53  Aligned_cols=57  Identities=16%  Similarity=0.191  Sum_probs=42.6

Q ss_pred             ceeecccCccC-ccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919          322 CWLYLNNNHFS-GKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       322 ~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      +.++.++..++ ..++..+  .++|+.|+|++|.|+...+..|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35666776665 1233222  457999999999999666777889999999999999875

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=87.29  E-value=0.48  Score=33.38  Aligned_cols=45  Identities=18%  Similarity=0.205  Sum_probs=22.8

Q ss_pred             CCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCC
Q 042919           66 LYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD  111 (428)
Q Consensus        66 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  111 (428)
                      ++.+...+|.+|..|+.+.+... ++.....+|.+|.+|+.+.+.+
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            33344445555555555555543 3333444555555555555544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=81.24  E-value=1.6  Score=30.69  Aligned_cols=47  Identities=15%  Similarity=0.117  Sum_probs=28.7

Q ss_pred             ccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCC
Q 042919          330 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISEN  377 (428)
Q Consensus       330 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~  377 (428)
                      .++.....+|.+|.+|+.+.|..+ ++.....+|.+|.+|+.+.+.+.
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            344455566677777777776654 33244556777777777776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	428
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 8e-20
 Identities = 71/382 (18%), Positives = 129/382 (33%), Gaps = 29/382 (7%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L   ++  L K N+   +S   ++L  +  L      +  ++   +  + +L  ++  +N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 76

Query: 113 NFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILL 172
               +    +L     + +     + +                        L+ L ++  
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 173 QQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG----------NFQLPSSK 222
            +L    I              L   N   D   L N +             +  + +  
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282
            +L  L  ++N+ S   P  +      L  L+L+ N  +     +++ +  L  LDL++N
Sbjct: 197 TNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA 342
             S   P   LSG   L+ L L  N +         T L  L LN N          S  
Sbjct: 252 QISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI--SNL 306

Query: 343 TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAF 402
            +L  L L  N +    P    +L+ LQ L  + N++   V S  NL+++  L    N  
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQI 363

Query: 403 NGSIPGALRRSLSLTVLDLRDN 424
           +   P  L     +T L L D 
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 1e-17
 Identities = 72/361 (19%), Positives = 138/361 (38%), Gaps = 29/361 (8%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
           +L  +  L   +  +   +   +  L ++  ++ S+NQLT    + + N+  L  + +++
Sbjct: 42  DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNN 97

Query: 112 NNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLP-----------EYQLKALNLR 160
           N    +    +L N + L +F    + +                             +L+
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 161 NCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 220
             S     + L    +L  ++        +    +L   T L++L   NN +S    L  
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS 280
             + L  L ++ N+      G +   L  L  L+L+ N      P  +S + +L  L L 
Sbjct: 218 LTN-LDELSLNGNQLKD--IGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 271

Query: 281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLS 340
           +N  S   P   L+     + L L++N L+      N  NL +L L  N+ S      +S
Sbjct: 272 ANQISNISPLAGLTAL---TNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVS 326

Query: 341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMN 400
             T L  L  +NN +         NL+ + +L    NQ+    P + NL+ + +L ++  
Sbjct: 327 SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA-NLTRITQLGLNDQ 383

Query: 401 A 401
           A
Sbjct: 384 A 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 4e-11
 Identities = 60/331 (18%), Positives = 107/331 (32%), Gaps = 65/331 (19%)

Query: 153 QLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS 211
           Q+  L      ++++  +  + L +L  I+ S+N+L  I P   L     +         
Sbjct: 45  QVTTLQADRLGIKSIDGV--EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 102

Query: 212 LSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPS----- 266
           ++    L +     L  +   +    +   N+ ++     +++                 
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162

Query: 267 -----------------------------SMSEMKRLESLDLSSNNFSGELPRQFLSGCF 297
                                         ++++  LESL  ++N  S   P        
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LT 219

Query: 298 SLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG 357
           +L  LSL+ N L+      + TNL  L L NN  S      LS  T L EL L  N +  
Sbjct: 220 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISN 277

Query: 358 QIP--------------------PWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYM 397
             P                        NL  L +L +  N +    P S +L+ L+RL+ 
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-SLTKLQRLFF 336

Query: 398 HMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
             N  +     +L    ++  L    N+ S 
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 7e-07
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 13  QELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSP 72
            EL     Q  +I+ L+   +          +   + I  LKNL  L L  NN+      
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--IS 323

Query: 73  CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVF 132
            +S+LT ++ L  ++N+++    S +AN+ ++ +LS   N    L    +L     +   
Sbjct: 324 PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTR---ITQL 378

Query: 133 KLSN 136
            L++
Sbjct: 379 GLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           +  L  L  L  + N +       L+NLT+I  L    NQ++    + +AN+  +  L L
Sbjct: 325 VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGL 380

Query: 110 DDN 112
           +D 
Sbjct: 381 NDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.9 bits (190), Expect = 2e-16
 Identities = 52/259 (20%), Positives = 81/259 (31%), Gaps = 3/259 (1%)

Query: 152 YQLKALNLRNCSLQ---ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLL 208
           Y++  L+L   +L     +PS L     L F+ +             +   T+L  LY+ 
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 209 NNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSM 268
           + ++SG      S+   L                    LP L+ +    N   G IP S 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 269 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNN 328
               +L +    S N          +           +       V   S          
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN 388
            +        +  + +L  LDL NN +YG +P     L  L  L++S N LCG +P   N
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 389 LSSLRRLYMHMNAFNGSIP 407
           L          N      P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 26/257 (10%)

Query: 75  SNLTHIKVLDLSSNQLTGNLQ--SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVF 132
           +    +  LDLS   L       S +AN+  L +L +   N        ++   ++L   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 133 KLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFP 192
            ++++ V     +F    +  +      N     LP  +    +L  I    N++ G  P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 193 SWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNK------------------ 234
                 +    ++ +  N L+G      +  +L  +D+S N                   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 235 ----FSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290
                S         +   L  L+L  N   G +P  ++++K L SL++S NN  GE+P+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 291 QFLSGCFSLSFLSLSDN 307
                       + ++N
Sbjct: 287 --GGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 51  CELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
              KNL  LDL  N +YG L   L+ L  +  L++S N L G +     N++  +  +  
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

Query: 111 DNNF 114
           +N  
Sbjct: 300 NNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 6/236 (2%)

Query: 198 NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL---DISHNKFSCQLPGNMGKILPELLSLN 254
              +++ L L   +L   + +PSS  +L  L    I                L +L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV 314
           ++     G IP  +S++K L +LD S N  SG LP    S    +   +   N + G + 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIP 166

Query: 315 --FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFL 372
             + + + L      + +             +L  +DLS NML G     FG+    Q +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 373 DISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
            +++N L   +       +L  L +  N   G++P  L +   L  L++  N   G
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQL 90
           +   +  G+ +LK L  L++S NNL G + P   NL    V   ++N+ 
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 266 SSMSEMKRLESLDLSSNNFSGELP-RQFLSGCFSLSFLSLSDNHLQGEVVFP---NSTNL 321
            + ++  R+ +LDLS  N     P    L+    L+FL +   +     + P     T L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 322 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG 381
            +LY+ + + SG I D LS+  +L+ LD S N L G +PP   +L  L  +    N++ G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 382 SVPSSFN 388
           ++P S+ 
Sbjct: 164 AIPDSYG 170

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 158 NLRNCSLQ-ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF 216
           +LRN  +   LP  L Q   L  +++S N L G  P     N  + D     NN      
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGS 307

Query: 217 QLPS 220
            LP+
Sbjct: 308 PLPA 311

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 1e-15
 Identities = 51/274 (18%), Positives = 88/274 (32%), Gaps = 8/274 (2%)

Query: 157 LNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF 216
            +     LQA+P  +      + I L  N++  +  +               N     + 
Sbjct: 16  TSCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 217 QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276
              +    L +LD+S N     +       L  L +L+L   G +   P     +  L+ 
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGK 334
           L L  N         F     +L+ L L  N +    E  F    +L  L L+ N  +  
Sbjct: 134 LYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRR 394
                     L+ L L  N L          L  LQ+L +++N       +    + L++
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

Query: 395 LYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
                +    S+P  L       +  L  N+  G
Sbjct: 253 FRGSSSEVPCSLPQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 55/306 (17%), Positives = 103/306 (33%), Gaps = 56/306 (18%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLE-YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSN 136
              + + L  N+++    +     ++L       +       +  +     +      + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 137 SLVKIETEEFPGLPEYQLKALNLRNCSLQAL-PSILLQQLDLRFIDLSHNKLQGIFPSWL 195
            L  ++   F GL   +L  L+L  C LQ L P +      L+++ L  N LQ +     
Sbjct: 92  QLRSVDPATFHGL--GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT- 148

Query: 196 LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNL 255
            ++   L  L+L  N +                          +P    + L  L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRI------------------------SSVPERAFRGLHSLDRLLL 184

Query: 256 SENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVF 315
            +N      P +  ++ RL +L L +NN S  LP + L+   +L +L L+DN        
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC---- 239

Query: 316 PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDIS 375
                   L+                   L +   S++ +   +P     L+G     ++
Sbjct: 240 --DCRARPLWAW-----------------LQKFRGSSSEVPCSLPQ---RLAGRDLKRLA 277

Query: 376 ENQLCG 381
            N L G
Sbjct: 278 ANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 5e-08
 Identities = 37/187 (19%), Positives = 61/187 (32%), Gaps = 3/187 (1%)

Query: 71  SPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQ 130
                 L  +  L L    L      +   + +L+YL L DN  + L         +   
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157

Query: 131 VFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGI 190
           +F   N +  +    F GL       L+ +N      P        L  + L  N L  +
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLH-QNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 191 FPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNM-GKILPE 249
               L      L  L L +N    + +       L +   S ++  C LP  + G+ L  
Sbjct: 217 PTEAL-APLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275

Query: 250 LLSLNLS 256
           L + +L 
Sbjct: 276 LAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 32/164 (19%), Positives = 54/164 (32%), Gaps = 6/164 (3%)

Query: 51  CELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
             L  L  L L  N L         +L ++  L L  N+++   +     + SL+ L L 
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 111 DNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
            N    +           + ++  +N+L  + TE     P   L+ L L +         
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA--PLRALQYLRLNDNPWVCDCRA 243

Query: 171 LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG 214
                 L+    S +++    P  L       D   L  N L G
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRL----AGRDLKRLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 3e-15
 Identities = 50/271 (18%), Positives = 97/271 (35%), Gaps = 14/271 (5%)

Query: 54  KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
            +   LDL  N +         NL ++  L L +N+++       A +  LE L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 114 FEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQ 173
            + L         +  ++    N + K+    F GL +  +  L         + +   Q
Sbjct: 91  LKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 174 QL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISH 232
            +  L +I ++   +  I           L  L+L  N ++          + L      
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 233 NKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG-----E 287
                 +        P L  L+L+ N    ++P  +++ K ++ + L +NN S       
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 288 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS 318
            P  + +   S S +SL  N +Q   + P++
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 1e-13
 Identities = 63/279 (22%), Positives = 112/279 (40%), Gaps = 14/279 (5%)

Query: 153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
            L+ +   +  L+ +P  L    D   +DL +NK+  I      +N   L TL L+NN +
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKI 67

Query: 213 SGNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEM 271
           S       +    L RL +S N+   +LP  M K L EL             + + +++M
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHF 331
             +E L  +    SG     F  G   LS++ ++D ++   +      +L  L+L+ N  
Sbjct: 127 IVVE-LGTNPLKSSGIENGAF-QGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKI 183

Query: 332 SGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSS 391
           +      L    +L +L LS N +         N   L+ L ++ N+L        +   
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 392 LRRLYMHMNAFNG------SIPGALRRSLSLTVLDLRDN 424
           ++ +Y+H N  +         PG   +  S + + L  N
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 6e-11
 Identities = 46/270 (17%), Positives = 89/270 (32%), Gaps = 14/270 (5%)

Query: 42  LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
           +T   +     LKNL  L L  N +        + L  ++ L LS NQL    + +   +
Sbjct: 43  ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 102

Query: 102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRN 161
           + L     +         FN L     +++         IE   F G+   +L  + + +
Sbjct: 103 QELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK--KLSYIRIAD 159

Query: 162 CSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSS 221
            ++  +P  L     L  + L  NK+  +  + L   N         N+  + +    ++
Sbjct: 160 TNITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 222 KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEG------RIPSSMSEMKRLE 275
              L  L +++NK      G        +  + L  N            P   ++     
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 276 SLDLSSNNFS-GELPRQFLSGCFSLSFLSL 304
            + L SN     E+        +  + + L
Sbjct: 276 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 47/289 (16%), Positives = 93/289 (32%), Gaps = 27/289 (9%)

Query: 93  NLQSVIANI-KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLP 150
            L+ V  ++      L L +N    +      KN   L    L  N + KI    F  L 
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLV 79

Query: 151 EYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
             +L+ L L    L+ LP  + + L  + + +  N++  +  S     N  +  + L  N
Sbjct: 80  --KLERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMI-VVELGTN 134

Query: 211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSE 270
            L  +     +   + +L          +      + P L  L+L  N       +S+  
Sbjct: 135 PLKSSGIENGAFQGMKKLSY-IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 193

Query: 271 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNH 330
           +  L  L LS N+ S        +          ++  ++      +   +  +YL+NN+
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

Query: 331 FSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379
            S    +                      P +    +    + +  N +
Sbjct: 254 ISAIGSNDF------------------CPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 2/132 (1%)

Query: 298 SLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 355
             + L L +N +    +  F N  NL  L L NN  S       +    L  L LS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 356 YGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLS 415
                     L  L+  +    ++  SV +  N   +  L  +    +G   GA +    
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 416 LTVLDLRDNEFS 427
           L+ + + D   +
Sbjct: 152 LSYIRIADTNIT 163

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 6/157 (3%)

Query: 274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHF 331
              LDL +N  +  +         +L  L L +N +       F     L  LYL+ N  
Sbjct: 33  TALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 332 SGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSS 391
               +        L   +     +   +      +  ++              +   +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 392 LRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
           L  + +          G      SLT L L  N+ + 
Sbjct: 152 LSYIRIADTNITTIPQGLPP---SLTELHLDGNKITK 185

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISEN 377
             +   L L NN  +           +L  L L NN +    P  F  L  L+ L +S+N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 378 QLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427
           QL           +L+ L +H N               + V++L  N   
Sbjct: 90  QLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 7e-10
 Identities = 38/206 (18%), Positives = 58/206 (28%), Gaps = 26/206 (12%)

Query: 220 SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL 279
           S     L ++      +  LP +   +  +   L+LSEN       +++    RL  L+L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 280 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV----------------------VFPN 317
                +       L    +L         L                              
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISEN 377
              L  LYL  N         L+    L +L L+NN L          L  L  L + EN
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 378 QLCGSVPSSFNLSSLRRLYMHMNAFN 403
            L       F    L   ++H N + 
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 48/235 (20%), Positives = 79/235 (33%), Gaps = 33/235 (14%)

Query: 50  ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
           + ++ + +E++  K NL   L P L       +L LS N L     + +     L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
           D      L    +L                              L  L+L +  LQ+LP 
Sbjct: 63  DRAELTKLQVDGTLPV----------------------------LGTLDLSHNQLQSLPL 94

Query: 170 ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLD 229
           +      L  +D+S N+L  +    L       +     N   +    L +    L +L 
Sbjct: 95  LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154

Query: 230 ISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF 284
           +++N  +    G +   L  L +L L EN     IP        L    L  N +
Sbjct: 155 LANNNLTELPAGLLNG-LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 36/182 (19%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 306
           +   L +N  +      +P  +   K    L LS N          L     L+ L+L  
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDR 64

Query: 307 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNL 366
             L    V      L  L   +++    +        +L  LD+S N L          L
Sbjct: 65  AELTKLQVDGTLPVLGTLD-LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 367 SGLQFLDISENQLCGSVPSSFNLSSLRRLYMH-MNAFNGSIPGALRRSLSLTVLDLRDNE 425
             LQ L +  N+L    P     +          N       G L    +L  L L++N 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 426 FS 427
             
Sbjct: 184 LY 185

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 54/343 (15%), Positives = 97/343 (28%), Gaps = 27/343 (7%)

Query: 51  CELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
           C  +   EL+L+   L   L     +L     L  S N LT     +    +SL+ L +D
Sbjct: 35  CLDRQAHELELNNLGL-SSLPELPPHLES---LVASCNSLT----ELPELPQSLKSLLVD 86

Query: 111 DNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI 170
           +NN + L     L  +  +              +            L + +    +L  +
Sbjct: 87  NNNLKALSDLPPLLEYLGVS-----------NNQLEKLPELQNSSFLKIIDVDNNSLKKL 135

Query: 171 LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDI 230
                 L FI   +N+L+ +     L   T +         L        S      +  
Sbjct: 136 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 195

Query: 231 SHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290
              +               LL            +    + +  L  L  S          
Sbjct: 196 ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255

Query: 291 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350
                    +   L+ +  +   +     +L  L ++NN    ++         L  L  
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIA 311

Query: 351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLR 393
           S N L  ++P    NL   + L +  N L        ++  LR
Sbjct: 312 SFNHL-AEVPELPQNL---KQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 16  WHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLS 75
                   +I     E           +  + +      +L EL++S N L   L     
Sbjct: 246 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPP 304

Query: 76  NLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGL 117
            L     L  S N L      V    ++L+ L ++ N     
Sbjct: 305 RLER---LIASFNHLA----EVPELPQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 47/298 (15%), Positives = 85/298 (28%), Gaps = 25/298 (8%)

Query: 145 EFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSW-LLQNNTKLD 203
             P LP   L++L     SL  LP +      L+ + + +N L+ +     LL+     +
Sbjct: 52  SLPELPP-HLESLVASCNSLTELPELPQS---LKSLLVDNNNLKALSDLPPLLEYLGVSN 107

Query: 204 TLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGR 263
                   L  +  L     D   L    +          G    E L    +       
Sbjct: 108 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAI 167

Query: 264 IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCW 323
              + S  K  +      +  +G    + L    +L FL+            P+      
Sbjct: 168 YADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLE 227

Query: 324 LYLNNNHFSGKIQDGLSKATSL-------------LELDLSNNMLYGQIPPWFGNLSGLQ 370
                +++   + +     T L                    N    +I         L+
Sbjct: 228 ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 287

Query: 371 FLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
            L++S N+L   +P+      L RL    N     +P   +   +L  L +  N    
Sbjct: 288 ELNVSNNKLI-ELPAL--PPRLERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQ 291
           +   S     ++  + P L  LN+S N     +P+      RLE L  S N+ + E+P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVP-- 320

Query: 292 FLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNN 328
                 +L  L +  N L+     P S  +  L +N+
Sbjct: 321 --ELPQNLKQLHVEYNPLREFPDIPES--VEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 52/310 (16%), Positives = 87/310 (28%), Gaps = 21/310 (6%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEY----- 106
              +L  L  S N+L   L     +L  + V + +   L+     +     S        
Sbjct: 56  LPPHLESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP 114

Query: 107 ----LSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNC 162
                S          S   L +      F  + +    E  E   LP       +  + 
Sbjct: 115 ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 174

Query: 163 SLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSK 222
                  + L+ +      L         P              L +   S         
Sbjct: 175 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 234

Query: 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282
           +     ++  +     +  N+   L EL       N     I S       LE L++S+N
Sbjct: 235 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 294

Query: 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA 342
               ELP    +    L  L  S NHL    V     NL  L++  N    +  D     
Sbjct: 295 KLI-ELP----ALPPRLERLIASFNHLAE--VPELPQNLKQLHVEYNPLR-EFPDIPE-- 344

Query: 343 TSLLELDLSN 352
            S+ +L +++
Sbjct: 345 -SVEDLRMNS 353

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 33/287 (11%), Positives = 78/287 (27%), Gaps = 17/287 (5%)

Query: 137 SLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLL 196
           +   +  +    L    + A       +    +       ++ +DLS++ ++      +L
Sbjct: 8   TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLS 256
              +KL  L L    LS    + ++      L   +            + L    S    
Sbjct: 68  SQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125

Query: 257 ENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFP 316
            N       +       +        + S  + +  LSG       S          V  
Sbjct: 126 LNLSWCFDFTEKHVQVAV-------AHVSETITQLNLSGYRKNLQKSDLSTL-----VRR 173

Query: 317 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN-NMLYGQIPPWFGNLSGLQFLDIS 375
               +     ++            +   L  L LS    +  +     G +  L+ L + 
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

Query: 376 ENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLR 422
                G++       +L  L ++ + F       +    +  +  ++
Sbjct: 234 GIVPDGTLQLL--KEALPHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 227 RLDISHNKFSCQLPGNMGKILPE-LLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS 285
            LD++        P   G++L + +++     +  +  +    S   R++ +DLS++   
Sbjct: 4   TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIE 59

Query: 286 GELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDG 338
                  LS C  L  LSL    L   +V   + N   + LN +  SG  +  
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 35/246 (14%), Positives = 70/246 (28%), Gaps = 16/246 (6%)

Query: 180 IDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQL 239
           +DL+   L       LL             + +        S   +  +D+S++      
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVI--AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 240 PGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN-NFSGELPRQFLSGCFS 298
              +     +L +L+L        I +++++   L  L+LS    FS    +  LS C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 299 LSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ 358
           L  L+LS      E     +       +   + SG  ++             +       
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------SDLSTLVRRCPN 176

Query: 359 IPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTV 418
           +     + S +   D  +     +     +LS                   L    +L  
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS-------RCYDIIPETLLELGEIPTLKT 229

Query: 419 LDLRDN 424
           L +   
Sbjct: 230 LQVFGI 235

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 8/177 (4%)

Query: 252 SLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 311
           +++ +  G +  IP  +        L L+ N                L  L L  N L G
Sbjct: 12  TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 312 EVVFPNSTNLCW--LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGL 369
                         L L  N               L  L+L +N +   +P  F +L+ L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 370 QFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
             L+++ N    +   ++    LR+  ++  A     P  +R    + + DL  +EF
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEF 182

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 4e-06
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 11/101 (10%)

Query: 274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV------FPNSTNLCWLYLN 327
           ++SLD+     S     + L        + L D  L              +  L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 328 NNHFSGKIQDGLSKA-----TSLLELDLSNNMLYGQIPPWF 363
           +N         + +        + +L L N  L G      
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 55  NLVELDLSKNNL-YGHLSPCLSNLTHIKVLDLSSNQLTG----NLQSVIANIKSLEYLSL 109
           ++  LD+    L     +  L  L   +V+ L    LT     ++ S +    +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 110 DDNNF--EGLFSFNSL--KNHSKLQVFKLSN 136
             N     G+            K+Q   L N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 4e-04
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 54  KNLVELDLSKNNL----YGHLSPCLSNLTHIKVLDLSSNQLTGN-----LQSVIANIKSL 104
             L  L L+  ++       L+  L     ++ LDLS+N L        ++SV      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 105 EYLSLDDNNFEG 116
           E L L D  +  
Sbjct: 429 EQLVLYDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 5e-04
 Identities = 49/389 (12%), Positives = 92/389 (23%), Gaps = 16/389 (4%)

Query: 53  LKNLVELDLSKNNL----YGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-----NIKS 103
           L+    + L    L       +S  L     +  L+L SN+L       +          
Sbjct: 26  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85

Query: 104 LEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCS 163
           ++ LSL +    G            L   +  +    +  +    L    L     R   
Sbjct: 86  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 145

Query: 164 LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH 223
           LQ     L          +   K      +    +  +     L         QL + K 
Sbjct: 146 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 205

Query: 224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN 283
           +   +   + +  C +  +   +    L  N  + G  G        +     L      
Sbjct: 206 ESCGVTSDNCRDLCGIVASKASLRELALGSN--KLGDVGMAELCPGLLHPSSRLRTLWIW 263

Query: 284 FSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKAT 343
             G   +     C  L                 +                     +   +
Sbjct: 264 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 323

Query: 344 SLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFN 403
                    + +  Q             L+ +  +           S LR L++     +
Sbjct: 324 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ-PGSVLRVLWLADCDVS 382

Query: 404 G----SIPGALRRSLSLTVLDLRDNEFSG 428
                S+   L  + SL  LDL +N    
Sbjct: 383 DSSCSSLAATLLANHSLRELDLSNNCLGD 411

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 7e-04
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 9/108 (8%)

Query: 175 LDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN-----FQLPSSKHDLLRLD 229
           LD++ +D+   +L     + LL    +   + L +  L+                L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 230 ISHNKFSCQLPGNMGKILPE----LLSLNLSENGFEGRIPSSMSEMKR 273
           +  N+        + + L      +  L+L      G     +S   R
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 109

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 9/81 (11%)

Query: 315 FPNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLELDLSNNMLYGQIPPWFG-----N 365
               + L  L+L +   S      +   L    SL ELDLSNN L               
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 366 LSGLQFLDISENQLCGSVPSS 386
              L+ L + +      +   
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 22/115 (19%)

Query: 232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGR----IPSSMSEMKRLESLDLSSNNFSGE 287
            +    +L   +G+    L  L L++          + +++     L  LDLS+N     
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 288 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA 342
              Q +                           L  L L + ++S +++D L   
Sbjct: 413 GILQLVESVRQ------------------PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 150 PEYQLKALNLRNCSL-----QALPSILLQQLDLRFIDLSHNKLQGIFPSWLL----QNNT 200
           P   L+ L L +C +      +L + LL    LR +DLS+N L       L+    Q   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 201 KLDTLYLLNNSLSGNFQ 217
            L+ L L +   S   +
Sbjct: 427 LLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 15/103 (14%)

Query: 73  CLSNLTHIKVLDLSSNQLTGN----LQSVIANIKSLEYLSLDDNNF--EGLFSFNSL--K 124
                + ++VL L+   ++ +    L + +    SL  L L +N     G+        +
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 125 NHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
               L+   L +     E E+       +L+AL     SL+ +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLRVI 459

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 27/226 (11%), Positives = 60/226 (26%), Gaps = 6/226 (2%)

Query: 157 LNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWL--LQNNTKLDTLYLLNNSLSG 214
              +   +  +PS L +  +   +     KL+ I         +  K++        +  
Sbjct: 13  FLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 70

Query: 215 NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRL 274
                +            N      P     +      L  +           +  ++++
Sbjct: 71  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 130

Query: 275 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN--STNLCWLYLNNNHFS 332
                 + N        F+   F    L L+ N +Q         +        +NN+  
Sbjct: 131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE 190

Query: 333 GKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ 378
               D    A+  + LD+S   ++        NL  L+       +
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 2/207 (0%)

Query: 78  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNS 137
            +   L     +L    +   +    LE + +  N+   +   +   N  KL   ++  +
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 138 LVKIETEEFPGLPEYQLKALNLRNCSLQALP--SILLQQLDLRFIDLSHNKLQGIFPSWL 195
              +            L+ L + N  ++ LP    +     +      +  +  I  +  
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 196 LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNL 255
           +  + +   L+L  N +        +   L  L++S N    +LP ++       + L++
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 256 SENGFEGRIPSSMSEMKRLESLDLSSN 282
           S           +  +K+L +    + 
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNL 235

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 52/357 (14%), Positives = 90/357 (25%), Gaps = 39/357 (10%)

Query: 52  ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN----LQSVIANIKSLEYL 107
           E K+L    ++  +     +  L     +K + LS N +       L   IA+ K LE  
Sbjct: 6   EGKSLKLDAITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
              D     +           LQ       L  +   +    P  Q   ++  +      
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 168 PSIL-LQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
              L    L  +        LQ +  +   +N   L ++    N L        +K    
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG 286
              +   K         G     L  L                E+K L+  D +  +   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLA------------YCQELKVLDLQDNTFTHLGS 232

Query: 287 ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 346
                 L    +L  L L+D  L              L                +   L 
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL----------------ENIGLQ 276

Query: 347 ELDLSNNMLYGQIPPW-----FGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMH 398
            L L  N +               +  L FL+++ N+          +  +      
Sbjct: 277 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKI 335
           L L+  + +  L    L     ++ L LS N L+           L  L    +  + + 
Sbjct: 3   LHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVL--QASDNALEN 57

Query: 336 QDGLSKATSLLELDLSNNML-YGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSL 392
            DG++    L EL L NN L          +   L  L++  N LC        L+ +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383
           L+L +   +  +   L +   +  LDLS+N L    PP    L  L+ L  S+N    +V
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNA-LENV 58

Query: 384 PSSFNLSSLRRLYMHMNAFNG-SIPGALRRSLSLTVLDLRDNEFSG 428
               NL  L+ L +  N     +    L     L +L+L+ N    
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 20/228 (8%)

Query: 53  LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
           L N +++   K+N+   ++   ++L  I  L      +T      +  + +L  L L DN
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 113 NFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILL 172
               L    +L   ++L++       V                        L  L     
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS---- 129

Query: 173 QQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISH 232
               L         +  +     LQ  +  +        L+   +L + K          
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA-------DD 182

Query: 233 NKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS 280
           NK S   P      LP L+ ++L  N      P  ++    L  + L+
Sbjct: 183 NKISDISPLAS---LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 21/231 (9%)

Query: 76  NLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS 135
            L +   +    + +T  +    A++  +  LS        +     L N   L   +L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNN---LIGLELK 71

Query: 136 NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWL 195
           ++       +   L   +                 +     L+ I         I     
Sbjct: 72  DN-------QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 196 LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNL 255
           L   + L  LYL  N ++    L    +       +          N+ K    L +L  
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK----LTTLKA 180

Query: 256 SENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 306
            +N      P  ++ +  L  + L +N  S   P   L+   +L  ++L++
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLS 340
           S   +       L+    L+ L   DN +       +  NL  ++L NN  S      L+
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS--PLA 214

Query: 341 KATSLLELDLSN 352
             ++L  + L+N
Sbjct: 215 NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 315 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDI 374
             N + L  L  ++N  S      L+   +L+E+ L NN +    P    N S L  + +
Sbjct: 169 LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 375 SENQ 378
           + NQ
Sbjct: 225 T-NQ 227

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 71  SPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKN 125
           +   +N    + LDL   ++   ++++ A +   + +   DN    L  F  L+ 
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 64

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 3/138 (2%)

Query: 252 SLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 311
            L  + +G        +   + L  L + +      L  + L G   L  L++  + L+ 
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 312 EVVF--PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGL 369
                   +  L  L L+ N         +   +    +   N +       W       
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE 130

Query: 370 QFLDISENQLCGSVPSSF 387
               + E +L        
Sbjct: 131 GLGGVPEQKLQCHGQGPL 148

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 16/221 (7%)

Query: 134 LSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQ-QLD-LRFIDLSHNKLQGIF 191
           L +  + + T       +         N   +++   + Q +L+ +  I  +++ ++ + 
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 62

Query: 192 PSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELL 251
               +Q    +  L+L  N L+    L + K+                  ++  +     
Sbjct: 63  G---IQYLPNVTKLFLNGNKLTDIKPLANLKNL------GWLFLDENKVKDLSSLKDLKK 113

Query: 252 SLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 311
             +LS         + +  + +LESL L +N  +       L+   +LS     DN +  
Sbjct: 114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL---EDNQISD 170

Query: 312 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN 352
            V     T L  LYL+ NH S      L+   +L  L+L +
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	428
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.62

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=7.6e-26  Score=207.82  Aligned_cols=342  Identities=23%  Similarity=0.269  Sum_probs=242.9

Q ss_pred             CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919           52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV  131 (428)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  131 (428)
                      .+.+|++|+++++.++..  +.+..+++|++|++++|+++.. + .++++++|++|++++|.+.++   ..++.+++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i---~~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI---TPLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC---GGGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccccc---ccccccccccc
Confidence            567899999999988754  4578899999999999988853 3 388899999999999988876   34788889999


Q ss_pred             EEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCc
Q 042919          132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS  211 (428)
Q Consensus       132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  211 (428)
                      ++++++............   .+.......+.+..+..... ....+........ .  .... +.............+.
T Consensus       115 L~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQITDIDPLKNLT---NLNRLELSSNTISDISALSG-LTSLQQLSFGNQV-T--DLKP-LANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCCCCGGGTTCT---TCSEEEEEEEEECCCGGGTT-CTTCSEEEEEESC-C--CCGG-GTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccc---cccccccccccccccccccc-ccccccccccccc-c--hhhh-hccccccccccccccc
Confidence            998877665433332221   24444444444333322111 1111111111111 1  1111 2233444444444443


Q ss_pred             cCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchh
Q 042919          212 LSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQ  291 (428)
Q Consensus       212 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  291 (428)
                      ... ......+++++.++++++.+.+..+  . ..+++|++|++++|.+.+.  ..+..+++|+.+++++|.+. ..+. 
T Consensus       187 ~~~-~~~~~~l~~~~~l~l~~n~i~~~~~--~-~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~-  258 (384)
T d2omza2         187 VSD-ISVLAKLTNLESLIATNNQISDITP--L-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-NLAP-  258 (384)
T ss_dssp             CCC-CGGGGGCTTCSEEECCSSCCCCCGG--G-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-
T ss_pred             ccc-ccccccccccceeeccCCccCCCCc--c-cccCCCCEEECCCCCCCCc--chhhcccccchhccccCccC-CCCc-
Confidence            322 2334567788889998888764322  2 2368899999999988743  46788999999999999887 3433 


Q ss_pred             hhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 042919          292 FLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQF  371 (428)
Q Consensus       292 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  371 (428)
                       +..+++|+.++++++.+.....+..++.++.+.+..|.+.+.  ..+..+++++.|++++|.+++. + .+..+++|++
T Consensus       259 -~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~  333 (384)
T d2omza2         259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQR  333 (384)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCE
T ss_pred             -ccccccCCEeeccCcccCCCCccccccccccccccccccccc--cccchhcccCeEECCCCCCCCC-c-ccccCCCCCE
Confidence             567899999999999998887888999999999999988753  3477889999999999999854 2 3888999999


Q ss_pred             EeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCC
Q 042919          372 LDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN  424 (428)
Q Consensus       372 L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  424 (428)
                      |++++|++++. +....+++|++|++++|++++..|  ++++++|+.|++++|
T Consensus       334 L~L~~n~l~~l-~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         334 LFFANNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCCCC-GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EECCCCCCCCC-hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999998853 332288999999999999985554  889999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=6.9e-24  Score=194.63  Aligned_cols=324  Identities=26%  Similarity=0.336  Sum_probs=234.5

Q ss_pred             ccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCC
Q 042919           48 TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHS  127 (428)
Q Consensus        48 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  127 (428)
                      +.+..+++|++|++++|++++..+  +.++++|++|++++|.+....  .+..+++|+.++++++.+.+..   ......
T Consensus        60 ~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~---~~~~~~  132 (384)
T d2omza2          60 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID---PLKNLT  132 (384)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG---GGTTCT
T ss_pred             cccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc--cccccccccccccccccccccc---cccccc
Confidence            457899999999999999996643  899999999999999988533  3789999999999999887763   344555


Q ss_pred             CCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEe
Q 042919          128 KLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYL  207 (428)
Q Consensus       128 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  207 (428)
                      .+.......+.+.......... ..............    ..+...+.........+.....  . ....+++++.+.+
T Consensus       133 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~~~l~l  204 (384)
T d2omza2         133 NLNRLELSSNTISDISALSGLT-SLQQLSFGNQVTDL----KPLANLTTLERLDISSNKVSDI--S-VLAKLTNLESLIA  204 (384)
T ss_dssp             TCSEEEEEEEEECCCGGGTTCT-TCSEEEEEESCCCC----GGGTTCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEEC
T ss_pred             cccccccccccccccccccccc-cccccccccccchh----hhhccccccccccccccccccc--c-ccccccccceeec
Confidence            6666666554442222211111 10122222222111    2233444455555555444322  1 1356788888888


Q ss_pred             cCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCC
Q 042919          208 LNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGE  287 (428)
Q Consensus       208 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  287 (428)
                      +++.+..... ...+++|++++++++.+. .++ .+. .+++|+.+++.+|.+.+..  .+..+++|++++++++.+. .
T Consensus       205 ~~n~i~~~~~-~~~~~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~-~  277 (384)
T d2omza2         205 TNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQIS-N  277 (384)
T ss_dssp             CSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC-C
T ss_pred             cCCccCCCCc-ccccCCCCEEECCCCCCC-Ccc-hhh-cccccchhccccCccCCCC--cccccccCCEeeccCcccC-C
Confidence            8887765432 345678889999988876 332 333 3789999999999887543  4778899999999999876 3


Q ss_pred             CchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCC
Q 042919          288 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLS  367 (428)
Q Consensus       288 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~  367 (428)
                      .+.  +..++.++.+.+..+.+.....+..+++++.|++++|.+.+..  .+..+++|++|++++|++++ ++ .+++++
T Consensus       278 ~~~--~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~  351 (384)
T d2omza2         278 ISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLT  351 (384)
T ss_dssp             CGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCT
T ss_pred             CCc--cccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCC
Confidence            433  5678899999999999888777888999999999999988653  37889999999999999983 44 588999


Q ss_pred             CCcEEeCCCCcCCcCCCCccccccCceEEccCC
Q 042919          368 GLQFLDISENQLCGSVPSSFNLSSLRRLYMHMN  400 (428)
Q Consensus       368 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~  400 (428)
                      +|++|++++|++++..+ ...+++|+.|++++|
T Consensus       352 ~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         352 NINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            99999999999986654 237899999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.7e-22  Score=176.84  Aligned_cols=259  Identities=21%  Similarity=0.273  Sum_probs=193.6

Q ss_pred             CccEEEcCCCCCccchh-HhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecC
Q 042919          153 QLKALNLRNCSLQALPS-ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDIS  231 (428)
Q Consensus       153 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  231 (428)
                      ++++|++++|++++++. .+..+++|++|+++++.+....+.. +..+++|+.|++++|.+.....  .....++.+.+.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~-f~~l~~L~~L~l~~n~l~~l~~--~~~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCSBCCS--SCCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh-hhCCCccCEecccCCccCcCcc--chhhhhhhhhcc
Confidence            48888888888888875 5778889999999998888554544 4678889999998888775432  244578888888


Q ss_pred             CCccccCCCchhhhcCCCCcEEEccCCCCC--CCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccc
Q 042919          232 HNKFSCQLPGNMGKILPELLSLNLSENGFE--GRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL  309 (428)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  309 (428)
                      .+.+. .++............++...+...  ......+..+++|+.+++.+|.+. .++..   .+++++.|++.+|..
T Consensus       109 ~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~---~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         109 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG---LPPSLTELHLDGNKI  183 (305)
T ss_dssp             SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS---CCTTCSEEECTTSCC
T ss_pred             ccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc---cCCccCEEECCCCcC
Confidence            88876 445444444667788887776443  234456778888999999988876 45433   367888999988876


Q ss_pred             ccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919          310 QGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF  387 (428)
Q Consensus       310 ~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  387 (428)
                      .....  +..++.+++|++++|.+.+..+..+.++++|++|++++|+++ .+|.++.++++|+.|+|++|+++......+
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhc
Confidence            65433  778888999999988888777778888899999999999887 667788888999999999998876544333


Q ss_pred             -------ccccCceEEccCCcCC--ccCCcccccCCCCCEEE
Q 042919          388 -------NLSSLRRLYMHMNAFN--GSIPGALRRSLSLTVLD  420 (428)
Q Consensus       388 -------~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~  420 (428)
                             ..++|+.|++++|++.  ...|.+|+.+.....++
T Consensus       263 ~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             cCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcccc
Confidence                   4678889999999875  35667777666555444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.2e-22  Score=177.24  Aligned_cols=266  Identities=22%  Similarity=0.272  Sum_probs=216.4

Q ss_pred             CccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecC
Q 042919          153 QLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDIS  231 (428)
Q Consensus       153 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~  231 (428)
                      ..++++-++.+++++|..+.  ++++.|++++|.++...+ ..+..+++|++|+++++.+.... .....+++|+.|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcCh-hHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            46777777777888887553  589999999999985443 33478999999999999988753 346789999999999


Q ss_pred             CCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCC-CCchhhhcCCCCCCEEeCCCcccc
Q 042919          232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG-ELPRQFLSGCFSLSFLSLSDNHLQ  310 (428)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~  310 (428)
                      +|++. .++...   .+.++.|....+.+.......+.....+..+.+..+.... ......+..++.|+.+++.+|.+.
T Consensus        88 ~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            99987 566544   4689999999998886666667788888999988875431 223345678899999999999877


Q ss_pred             cccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-cc
Q 042919          311 GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NL  389 (428)
Q Consensus       311 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~  389 (428)
                      ... ...+++|++|++.+|......+..+.+++.++.|++++|.+++..+..+.++++|++|+|++|+++.. +..+ .+
T Consensus       164 ~l~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l  241 (305)
T d1xkua_         164 TIP-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADH  241 (305)
T ss_dssp             SCC-SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTC
T ss_pred             ccC-cccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccc
Confidence            543 34578999999999999888888899999999999999999988888999999999999999999855 4455 89


Q ss_pred             ccCceEEccCCcCCccCCcc------cccCCCCCEEECCCCccC
Q 042919          390 SSLRRLYMHMNAFNGSIPGA------LRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       390 ~~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~  427 (428)
                      ++|+.|++++|+++......      ....++|+.|++++||++
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            99999999999998554433      345789999999999974

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=1.3e-23  Score=187.05  Aligned_cols=246  Identities=30%  Similarity=0.483  Sum_probs=184.0

Q ss_pred             CccEEEcCCCCCc---cchhHhhhCCCccEEEccC-CcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccE
Q 042919          153 QLKALNLRNCSLQ---ALPSILLQQLDLRFIDLSH-NKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLR  227 (428)
Q Consensus       153 ~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~  227 (428)
                      +++.|+++++++.   .+|..+.++++|+.|++++ |.+.+.+|..+ .++++|++|++++|.+.+.. .....+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhcc
Confidence            4888999888774   5789999999999999987 67776777776 68999999999999887643 23456778888


Q ss_pred             EecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCC-CEEECcCcccCCCCchhhhcCCCCCCEEeCCC
Q 042919          228 LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRL-ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD  306 (428)
Q Consensus       228 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  306 (428)
                      ++++.|.+...++..+.. ++.++.+++++|.+.+..|..+..+..+ +.+.++.|++.+..+.. +..+ ....+++..
T Consensus       130 l~l~~N~~~~~~p~~l~~-l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l-~~~~l~l~~  206 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL-NLAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGC-CCSEEECCS
T ss_pred             cccccccccccCchhhcc-Ccccceeecccccccccccccccccccccccccccccccccccccc-cccc-ccccccccc
Confidence            888888887677776665 7888888888888876677777777665 77888888876544433 3444 334677777


Q ss_pred             cccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCC
Q 042919          307 NHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP  384 (428)
Q Consensus       307 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  384 (428)
                      +.......  ...+++++.+++.++.+.+.. ..+..+++|+.|++++|++++.+|..++++++|++|+|++|++++.+|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            66654433  566778888888888776543 346677788888888888877778888888888888888888877666


Q ss_pred             CccccccCceEEccCCcCC
Q 042919          385 SSFNLSSLRRLYMHMNAFN  403 (428)
Q Consensus       385 ~~~~~~~L~~L~l~~~~~~  403 (428)
                      ....+++|+.+++++|+..
T Consensus       286 ~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         286 QGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CSTTGGGSCGGGTCSSSEE
T ss_pred             CcccCCCCCHHHhCCCccc
Confidence            5446778888888888753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9e-22  Score=172.27  Aligned_cols=203  Identities=25%  Similarity=0.277  Sum_probs=139.9

Q ss_pred             CccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEe
Q 042919          224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS  303 (428)
Q Consensus       224 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  303 (428)
                      ++++|++++|.++ .++...+..+++|+.|+++++.+....+..+...+.++++.+..+.....++...+.++++|++|+
T Consensus        33 ~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            4566666666665 344433334677777777777766555556666677777766544433355555566777777777


Q ss_pred             CCCccccccc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919          304 LSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       304 l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~  381 (428)
                      +++|.+....  .+..+++|+.+++.+|.++......|..+++|++|++++|.++...+..+.++++|+.+++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            7777665433  25566777777777777776666677777778888888777776666777777788888888887777


Q ss_pred             CCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          382 SVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       382 ~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      ..+..+ .+++|+.|++++|++....+..|+.+++|++|++++||+.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            666666 6777888888888877666677777788888888887765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.4e-22  Score=175.01  Aligned_cols=265  Identities=21%  Similarity=0.200  Sum_probs=178.7

Q ss_pred             EEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCccc-CCCCCCCccEEecCCCcc
Q 042919          157 LNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ-LPSSKHDLLRLDISHNKF  235 (428)
Q Consensus       157 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~  235 (428)
                      ++.++++++.+|..+.  +++++|++++|.++. ++...+..+++|+.|+++++.+..... .......++.+.......
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCC-CCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            3444444555554322  355666666666653 233333556666666666665544222 223445566665543332


Q ss_pred             ccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--
Q 042919          236 SCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--  313 (428)
Q Consensus       236 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--  313 (428)
                      ...++...+..+++|++|++++|.+....+..+...++|+.+++.+|.+. .++...+..++.|+.|++++|.+....  
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchh
Confidence            22444444444788999999888887666667778888999999998887 666666778888999999988887544  


Q ss_pred             ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCc
Q 042919          314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLR  393 (428)
Q Consensus       314 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~  393 (428)
                      .+..+++|+++++.+|.+.+..+..|..+++|++|++++|.+.+..+..++++++|++|++++|++...-........++
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~  251 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ  251 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHH
Confidence            37888999999999999888888889999999999999999987777889999999999999998875433222234566


Q ss_pred             eEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          394 RLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       394 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      ......+.+....|..+.+   ....+++.+.++|
T Consensus       252 ~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         252 KFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             HCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             hCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence            6666666676566766543   3444455555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=4.5e-22  Score=176.92  Aligned_cols=248  Identities=26%  Similarity=0.387  Sum_probs=204.1

Q ss_pred             CccEEEccCCcCCCC--CchhhhhcCCCCCEEEecC-CccCC-cccCCCCCCCccEEecCCCccccCCCchhhhcCCCCc
Q 042919          176 DLRFIDLSHNKLQGI--FPSWLLQNNTKLDTLYLLN-NSLSG-NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELL  251 (428)
Q Consensus       176 ~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  251 (428)
                      .++.|+++++.+...  ++..+ ..+++|++|++++ +.+.+ .+.....+++|++|++++|.+.+..+..+.. ++.|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccc-hhhhc
Confidence            689999999988753  45555 6899999999987 56664 4456678899999999999998665655554 88999


Q ss_pred             EEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccC
Q 042919          252 SLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNN  329 (428)
Q Consensus       252 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~  329 (428)
                      .+++..|.+....|..+.+++.++++++++|.+.+.++.........++.+.+++|.+.....  +..+ ....+++..+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            999999988878889999999999999999998877776644333445889999998875543  4444 3457888888


Q ss_pred             ccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCc
Q 042919          330 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPG  408 (428)
Q Consensus       330 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~  408 (428)
                      ...+..+..+..+++++.+++.++.+.+.+ ..+..+++|+.|++++|++++..|..+ .+++|+.|+|++|++++.+|.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            888788888889999999999999988554 468888999999999999998888878 899999999999999988885


Q ss_pred             ccccCCCCCEEECCCCc-cCC
Q 042919          409 ALRRSLSLTVLDLRDNE-FSG  428 (428)
Q Consensus       409 ~~~~~~~L~~L~l~~~~-~~~  428 (428)
                       ++.+++|+.+++++|+ +.|
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEES
T ss_pred             -cccCCCCCHHHhCCCccccC
Confidence             5788999999999997 444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.3e-21  Score=167.70  Aligned_cols=192  Identities=23%  Similarity=0.230  Sum_probs=111.4

Q ss_pred             EEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCC
Q 042919          227 RLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD  306 (428)
Q Consensus       227 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  306 (428)
                      +++.+++.++ .+|..+   .+++++|++++|.++...+..|.++++|++|++++|.++ .++.  +..+++|+.|++++
T Consensus        14 ~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          14 EVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSH   86 (266)
T ss_dssp             EEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEEECCS
T ss_pred             EEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--cccccccccccccc
Confidence            3444444444 344333   235566666666555444445555666666666666554 3332  23455666666666


Q ss_pred             cccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCC
Q 042919          307 NHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPS  385 (428)
Q Consensus       307 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  385 (428)
                      |.+..... +..+++|+.|+++++.+.......+..+.+++.|++.+|.++...+..+..++.|+.+++++|++++..+.
T Consensus        87 N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~  166 (266)
T d1p9ag_          87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (266)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             ccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcc
Confidence            65554333 45566666666666666555555556666666666666666645555556666666666666666655555


Q ss_pred             cc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCcc
Q 042919          386 SF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       386 ~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  426 (428)
                      .+ .+++|++|+|++|+++ .+|..+..+++|+.|+++|||+
T Consensus       167 ~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            55 5666666666666666 5566666666666666666664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-18  Score=149.82  Aligned_cols=175  Identities=25%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             CccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEe
Q 042919          224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS  303 (428)
Q Consensus       224 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  303 (428)
                      ++++|++++|.+. .++...+..+++|++|++++|.++..  ..+..+++|++|++++|++.. .+. .+..+++|+.|+
T Consensus        32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~  106 (266)
T d1p9ag_          32 DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLD  106 (266)
T ss_dssp             TCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEECCSSCCSS-CCC-CTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCC-CcCHHHhhcccccccccccccccccc--ccccccccccccccccccccc-ccc-cccccccccccc
Confidence            3444555554444 22222222245555555555554421  123345555555555555442 211 234455555555


Q ss_pred             CCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919          304 LSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       304 l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~  381 (428)
                      ++++.+.....  +..+.++++|++++|.+....+..+..+++++.+++++|++++..+..+..+++|++|+|++|+++.
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc
Confidence            55554443222  4445555555555555554444445555555555555555554444455555555555555555553


Q ss_pred             CCCCccccccCceEEccCCcCC
Q 042919          382 SVPSSFNLSSLRRLYMHMNAFN  403 (428)
Q Consensus       382 ~~~~~~~~~~L~~L~l~~~~~~  403 (428)
                      .....+.+++|+.|++++|++.
T Consensus       187 lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         187 IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cChhHCCCCCCCEEEecCCCCC
Confidence            3222235555555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.3e-19  Score=155.28  Aligned_cols=177  Identities=21%  Similarity=0.206  Sum_probs=71.1

Q ss_pred             CCCCEEEecCCccCC--cccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCC-CCCCCC-CccccCCCCCC
Q 042919          200 TKLDTLYLLNNSLSG--NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSEN-GFEGRI-PSSMSEMKRLE  275 (428)
Q Consensus       200 ~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~l~~~~~L~  275 (428)
                      .+|++|++++|.+..  .......+++|++|++.++.+++.....+.. +++|++|++++| .+++.. ......+++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhcc
Confidence            345555555544332  1122334455555555555443333333332 445555555543 222111 11122344555


Q ss_pred             EEECcCcc-cCCCCc-hhhhcCCCCCCEEeCCCcc--cccccc---cCCCCCcceeecccCc-cCccchhhhhcCCCCcE
Q 042919          276 SLDLSSNN-FSGELP-RQFLSGCFSLSFLSLSDNH--LQGEVV---FPNSTNLCWLYLNNNH-FSGKIQDGLSKATSLLE  347 (428)
Q Consensus       276 ~L~l~~~~-~~~~~~-~~~~~~~~~L~~L~l~~~~--~~~~~~---~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~  347 (428)
                      +|++++|. +++... ......++.|+.|+++++.  +.+...   ...+++|++|++++|. +++.....+.++++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            55555442 111111 1111123445555554432  111111   2334455555554432 33334444444455555


Q ss_pred             EEccCC-cccccCCcccCCCCCCcEEeCCCC
Q 042919          348 LDLSNN-MLYGQIPPWFGNLSGLQFLDISEN  377 (428)
Q Consensus       348 L~l~~~-~i~~~~~~~~~~~~~L~~L~L~~~  377 (428)
                      |++++| .+++.....++++|+|+.|++++|
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            555543 344333334444455555555444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.5e-20  Score=170.67  Aligned_cols=181  Identities=26%  Similarity=0.226  Sum_probs=88.6

Q ss_pred             CCCCcEEEccCCCCCCC-----CCccccCCCCCCEEECcCcccCCCCc---hhhhcCCCCCCEEeCCCcccccccc----
Q 042919          247 LPELLSLNLSENGFEGR-----IPSSMSEMKRLESLDLSSNNFSGELP---RQFLSGCFSLSFLSLSDNHLQGEVV----  314 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~----  314 (428)
                      .+.++.+.+.++.....     ..........++.+++++|.+.....   ...+...+.++.+++++|.+.+...    
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            45556666655544211     11222334556666666665432111   1112335566666666665543221    


Q ss_pred             ---cCCCCCcceeecccCccCccchhh----hhcCCCCcEEEccCCccccc----CCcccC-CCCCCcEEeCCCCcCCcC
Q 042919          315 ---FPNSTNLCWLYLNNNHFSGKIQDG----LSKATSLLELDLSNNMLYGQ----IPPWFG-NLSGLQFLDISENQLCGS  382 (428)
Q Consensus       315 ---~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~i~~~----~~~~~~-~~~~L~~L~L~~~~~~~~  382 (428)
                         ......|+.+++++|.++......    +...++|++|++++|.+++.    ++..+. ..+.|++|+|++|.+++.
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence               223345666666666655443222    23445666666666666432    122222 345566666666666543


Q ss_pred             CCCcc-----ccccCceEEccCCcCCccCC----cccc-cCCCCCEEECCCCccC
Q 042919          383 VPSSF-----NLSSLRRLYMHMNAFNGSIP----GALR-RSLSLTVLDLRDNEFS  427 (428)
Q Consensus       383 ~~~~~-----~~~~L~~L~l~~~~~~~~~~----~~~~-~~~~L~~L~l~~~~~~  427 (428)
                      ....+     .+++|++|++++|+++....    ..+. ....|+.|++.+|.++
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            22221     45666666666666653222    2222 2235666666666553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.4e-20  Score=174.75  Aligned_cols=388  Identities=20%  Similarity=0.201  Sum_probs=244.6

Q ss_pred             eEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCC----chHhhhcCCCCCEEEccCCccCcchhhhhc-
Q 042919           25 ITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGH----LSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-   99 (428)
Q Consensus        25 ~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-   99 (428)
                      ++.+++  +|.++.+..+..    -+..++++++|+|++|.++..    +...+..+++|++|++++|.++......+. 
T Consensus         4 l~~ld~--~~~~i~~~~~~~----l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           4 IQSLDI--QCEELSDARWAE----LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEE--ESCCCCHHHHHH----HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCEEEe--eCCcCChHHHHH----HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            555666  244554443332    234678888899988887632    344567788899999988877633222222 


Q ss_pred             ----cCCCCcEEeCCCCccCCccc---cccccCCCCCcEEEccCCccccccC-----CCCCCCcCCccEEEcCCCCC---
Q 042919          100 ----NIKSLEYLSLDDNNFEGLFS---FNSLKNHSKLQVFKLSNSLVKIETE-----EFPGLPEYQLKALNLRNCSL---  164 (428)
Q Consensus       100 ----~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~---  164 (428)
                          ...+|++|++++|++++...   ...+..+++|++|++++|.+.....     .... ...............   
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~  156 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD-PQCRLEKLQLEYCSLSAA  156 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS-TTCCCCEEECTTSCCBGG
T ss_pred             HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccc-cccccccccccccccchh
Confidence                23478899998888765421   2356778888999888876632111     0011 111234444444333   


Q ss_pred             --ccchhHhhhCCCccEEEccCCcCCCCCch----hhhhcCCCCCEEEecCCccCCc-----ccCCCCCCCccEEecCCC
Q 042919          165 --QALPSILLQQLDLRFIDLSHNKLQGIFPS----WLLQNNTKLDTLYLLNNSLSGN-----FQLPSSKHDLLRLDISHN  233 (428)
Q Consensus       165 --~~l~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~  233 (428)
                        ..+...+...+.++.+.++++...+....    .+.......+.+.+..+.....     .......+.++.+.+.++
T Consensus       157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n  236 (460)
T d1z7xw1         157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  236 (460)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc
Confidence              12234455566788888887765432211    1223345667788777765431     112235577889999888


Q ss_pred             ccccCC----CchhhhcCCCCcEEEccCCCCCCC----CCccccCCCCCCEEECcCcccCCCCchh----hhcCCCCCCE
Q 042919          234 KFSCQL----PGNMGKILPELLSLNLSENGFEGR----IPSSMSEMKRLESLDLSSNNFSGELPRQ----FLSGCFSLSF  301 (428)
Q Consensus       234 ~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~  301 (428)
                      .+....    ..........++.+++++|.+...    ....+...+.++.+++++|.+.+.....    .......|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~  316 (460)
T d1z7xw1         237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  316 (460)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             cccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence            754221    122233356899999999877632    2233556788999999998875322211    1223468999


Q ss_pred             EeCCCcccccccc------cCCCCCcceeecccCccCccchhh----hh-cCCCCcEEEccCCccccc----CCcccCCC
Q 042919          302 LSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKIQDG----LS-KATSLLELDLSNNMLYGQ----IPPWFGNL  366 (428)
Q Consensus       302 L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~----l~-~~~~L~~L~l~~~~i~~~----~~~~~~~~  366 (428)
                      +.+.++.+.....      ....++|++|++++|.+++.....    +. ..+.|++|++++|.+++.    +...+..+
T Consensus       317 l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~  396 (460)
T d1z7xw1         317 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN  396 (460)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             ccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcC
Confidence            9999998876543      455678999999999987544333    32 467899999999999753    34456678


Q ss_pred             CCCcEEeCCCCcCCcCCCCcc------ccccCceEEccCCcCCccCCcc----cccCCCCCEE
Q 042919          367 SGLQFLDISENQLCGSVPSSF------NLSSLRRLYMHMNAFNGSIPGA----LRRSLSLTVL  419 (428)
Q Consensus       367 ~~L~~L~L~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L  419 (428)
                      ++|++|+|++|++++.....+      ....|+.|++.+|.+.......    ....|+|+.|
T Consensus       397 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            999999999999886544433      2347999999999987544433    3456777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=3.5e-16  Score=140.82  Aligned_cols=315  Identities=30%  Similarity=0.374  Sum_probs=180.3

Q ss_pred             CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919           54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK  133 (428)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  133 (428)
                      .++++|+++++.++. +|+   ..++|++|++++++++ .+|..   ..+|+.|++++|.+..+..   +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~---l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSD---L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCS---C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCCC-CCC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhh---h--cccccccc
Confidence            468889999888874 453   3578899999988887 44543   4678888888887765521   1  13577777


Q ss_pred             ccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccC
Q 042919          134 LSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS  213 (428)
Q Consensus       134 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  213 (428)
                      ++++.+...+. +...+  +|+.+++.++.+...+..   ...+..+.+..+.......   +..++.++.+.+..+...
T Consensus       105 L~~n~l~~lp~-~~~l~--~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~---l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         105 VSNNQLEKLPE-LQNSS--FLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPE---LQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCSSCCC-CTTCT--TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccc-hhhhc--cceeeccccccccccccc---cccccchhhcccccccccc---ccccccceeccccccccc
Confidence            77766644332 22222  477777776666554432   2345556555544332211   234566667776666554


Q ss_pred             CcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhh
Q 042919          214 GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFL  293 (428)
Q Consensus       214 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  293 (428)
                      ....   .....+.+......+. ..+. .. .++.++.++++++.... .+   ....++..+.+..+.+. ..+    
T Consensus       176 ~~~~---~~~~~~~l~~~~~~~~-~~~~-~~-~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~-~~~----  240 (353)
T d1jl5a_         176 KLPD---LPLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLT-DLP----  240 (353)
T ss_dssp             SCCC---CCTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCS-CCC----
T ss_pred             cccc---cccccccccccccccc-cccc-cc-ccccccccccccccccc-cc---ccccccccccccccccc-ccc----
Confidence            3221   1122334444444332 2222 11 25667777776665542 22   22345566666665543 111    


Q ss_pred             cCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEe
Q 042919          294 SGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD  373 (428)
Q Consensus       294 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  373 (428)
                      .....+....+..+.+.....  -.......++..+.+...    ...+++|++|++++|+++ .+|..   +++|+.|+
T Consensus       241 ~~~~~l~~~~~~~~~~~~l~~--l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~  310 (353)
T d1jl5a_         241 ELPQSLTFLDVSENIFSGLSE--LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLI  310 (353)
T ss_dssp             CCCTTCCEEECCSSCCSEESC--CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEE
T ss_pred             ccccccccccccccccccccc--ccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEE
Confidence            123345555544433322111  112333444444444322    234678999999999988 55643   57899999


Q ss_pred             CCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECC
Q 042919          374 ISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLR  422 (428)
Q Consensus       374 L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  422 (428)
                      +++|+++. .+..  +++|++|++++|++. .+|..   .+.|+.|.+.
T Consensus       311 L~~N~L~~-l~~~--~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         311 ASFNHLAE-VPEL--PQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CCSSCCSC-CCCC--CTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             CCCCcCCc-cccc--cCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence            99999874 3332  568999999999987 66653   3467777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2e-17  Score=139.12  Aligned_cols=164  Identities=23%  Similarity=0.345  Sum_probs=114.8

Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeec
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  326 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  326 (428)
                      +++|++|++++|.+.+..  .+..+++++++++++|.+. .++.  +..++.|+.+.++++.......+...+.++.+.+
T Consensus        62 l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~~--l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~  136 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVSA--IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL  136 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCGG--GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEEC
T ss_pred             CCCCcEeecCCceeeccc--ccccccccccccccccccc-cccc--ccccccccccccccccccccchhccccchhhhhc
Confidence            667777777777665332  3666777777777777665 3432  4567777777777777666666677777788888


Q ss_pred             ccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccC
Q 042919          327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSI  406 (428)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  406 (428)
                      +++.+...  ..+..+++|+.|++.+|.+.+.  ..++++++|+.|++++|++++. +....+++|++|++++|++++..
T Consensus       137 ~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~~l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         137 DLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             CSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECTTSCCCBCG
T ss_pred             hhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCCC-hhhcCCCCCCEEECcCCcCCCCc
Confidence            77766533  3356778888888888877633  3377888888888888888753 22226788888888888887443


Q ss_pred             CcccccCCCCCEEECC
Q 042919          407 PGALRRSLSLTVLDLR  422 (428)
Q Consensus       407 ~~~~~~~~~L~~L~l~  422 (428)
                      |  ++.+++|+.|+++
T Consensus       212 ~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         212 P--LANTSNLFIVTLT  225 (227)
T ss_dssp             G--GTTCTTCCEEEEE
T ss_pred             c--cccCCCCCEEEee
Confidence            3  7788888888876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=8e-17  Score=135.40  Aligned_cols=165  Identities=24%  Similarity=0.352  Sum_probs=98.9

Q ss_pred             CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCC
Q 042919          221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS  300 (428)
Q Consensus       221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  300 (428)
                      .+++|++|++++|.+.+ +. .+ ..+++++.+++.+|.++..  ..+..+++|+++.++++... ....  +...+.++
T Consensus        61 ~l~~L~~L~ls~n~i~~-~~-~l-~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~-~~~~--~~~~~~~~  132 (227)
T d1h6ua2          61 YLNNLIGLELKDNQITD-LA-PL-KNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQ  132 (227)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GG-TTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCC
T ss_pred             cCCCCcEeecCCceeec-cc-cc-ccccccccccccccccccc--cccccccccccccccccccc-ccch--hccccchh
Confidence            34444444444444432 11 12 2256666666666665532  34566677777777666554 2221  34556677


Q ss_pred             EEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919          301 FLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       301 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      .+.+.++.+.....+..+++|++|++.+|.+.+.  ..+.++++|+.|++++|++++ ++ .++++++|++|+|++|+++
T Consensus       133 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC
T ss_pred             hhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC
Confidence            7777776666655566677777777777766533  236667777777777777763 32 3677777777777777776


Q ss_pred             cCCCCccccccCceEEcc
Q 042919          381 GSVPSSFNLSSLRRLYMH  398 (428)
Q Consensus       381 ~~~~~~~~~~~L~~L~l~  398 (428)
                      +..+ .-.+++|+.|+++
T Consensus       209 ~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         209 DVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             BCGG-GTTCTTCCEEEEE
T ss_pred             CCcc-cccCCCCCEEEee
Confidence            5432 2267777777775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.72  E-value=5.3e-15  Score=132.92  Aligned_cols=284  Identities=24%  Similarity=0.269  Sum_probs=189.2

Q ss_pred             CCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEE
Q 042919          102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFID  181 (428)
Q Consensus       102 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  181 (428)
                      .++++|++++++++.+.  +   ..++|++|+++++.+...+..+     .+|++|++.++++..++..   .+.|+.|+
T Consensus        38 ~~l~~LdLs~~~L~~lp--~---~~~~L~~L~Ls~N~l~~lp~~~-----~~L~~L~l~~n~l~~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLP--E---LPPHLESLVASCNSLTELPELP-----QSLKSLLVDNNNLKALSDL---PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCSCCC--S---CCTTCSEEECCSSCCSSCCCCC-----TTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred             cCCCEEEeCCCCCCCCC--C---CCCCCCEEECCCCCCcccccch-----hhhhhhhhhhcccchhhhh---cccccccc
Confidence            47899999999988762  2   3578999999998876544332     2599999999998877642   24799999


Q ss_pred             ccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCC
Q 042919          182 LSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFE  261 (428)
Q Consensus       182 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  261 (428)
                      +++|.+... +.  ...+++|+.++++++.+....   .....+..+.+..+.....  ..+.. ++.++.+++.++...
T Consensus       105 L~~n~l~~l-p~--~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~l~~~~~~~~~~--~~l~~-l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         105 VSNNQLEKL-PE--LQNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEEL--PELQN-LPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCSSC-CC--CTTCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSC--CCCTT-CTTCCEEECCSSCCS
T ss_pred             ccccccccc-cc--hhhhccceeeccccccccccc---cccccccchhhcccccccc--ccccc-cccceeccccccccc
Confidence            999998743 33  257899999999988876433   3345677777776655321  22222 678899999988765


Q ss_pred             CCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhc
Q 042919          262 GRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSK  341 (428)
Q Consensus       262 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  341 (428)
                      .. +.   .....+.+....+.+. ..+.  ...++.++.++++++......  ....++..+.+..+.+.... .   .
T Consensus       176 ~~-~~---~~~~~~~l~~~~~~~~-~~~~--~~~l~~L~~l~l~~n~~~~~~--~~~~~l~~~~~~~~~~~~~~-~---~  242 (353)
T d1jl5a_         176 KL-PD---LPLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDNYLTDLP-E---L  242 (353)
T ss_dssp             SC-CC---CCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCC--SCCTTCCEEECCSSCCSCCC-C---C
T ss_pred             cc-cc---cccccccccccccccc-cccc--ccccccccccccccccccccc--cccccccccccccccccccc-c---c
Confidence            32 21   1233456666655544 3433  456889999999988755432  34556777777766654221 1   1


Q ss_pred             CCCCcEEEccCCcccc----------------cCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCcc
Q 042919          342 ATSLLELDLSNNMLYG----------------QIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGS  405 (428)
Q Consensus       342 ~~~L~~L~l~~~~i~~----------------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  405 (428)
                      ...+...++..+.+..                .++.....+++|++|+|++|+++.. +.  .+++|+.|++++|+++ .
T Consensus       243 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~--~~~~L~~L~L~~N~L~-~  318 (353)
T d1jl5a_         243 PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PA--LPPRLERLIASFNHLA-E  318 (353)
T ss_dssp             CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCS-C
T ss_pred             cccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCcc-cc--ccCCCCEEECCCCcCC-c
Confidence            2233333333221110                1112233468999999999998843 33  3689999999999998 5


Q ss_pred             CCcccccCCCCCEEECCCCccC
Q 042919          406 IPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       406 ~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      +|..   +++|+.|++++|+|+
T Consensus       319 l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         319 VPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCCC---CTTCCEEECCSSCCS
T ss_pred             cccc---cCCCCEEECcCCcCC
Confidence            6643   568999999999986

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3e-16  Score=129.90  Aligned_cols=165  Identities=24%  Similarity=0.331  Sum_probs=121.9

Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeec
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  326 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  326 (428)
                      +.+++.|++.+|.+...  ..+..+++|++|++++|.+. .++.  ++.+++|+.|++++|.+.+...+..+++|+.|++
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcccc-Cccc--cccCcccccccccccccccccccccccccccccc
Confidence            45677788887777643  24677788888888888776 3442  4567788888888888777666777888888888


Q ss_pred             ccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccC
Q 042919          327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSI  406 (428)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  406 (428)
                      .+|.+...  ..+.+++.++.++++++.+++  +..+..+++|+.+++++|++++..+ ...+++|++|++++|+++ .+
T Consensus       120 ~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~-~l  193 (210)
T d1h6ta2         120 EHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DL  193 (210)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-BC
T ss_pred             cccccccc--ccccccccccccccccccccc--ccccccccccccccccccccccccc-ccCCCCCCEEECCCCCCC-CC
Confidence            88876532  456778888888888888763  2356778888899998888875432 227888999999998887 34


Q ss_pred             CcccccCCCCCEEECCC
Q 042919          407 PGALRRSLSLTVLDLRD  423 (428)
Q Consensus       407 ~~~~~~~~~L~~L~l~~  423 (428)
                      + .+..+++|+.|++++
T Consensus       194 ~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GGTTCTTCSEEEEEE
T ss_pred             h-hhcCCCCCCEEEccC
Confidence            4 578888999988864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=5.1e-16  Score=127.35  Aligned_cols=161  Identities=27%  Similarity=0.373  Sum_probs=122.1

Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeec
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  326 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  326 (428)
                      ++++++|+++++.+.+.  ..++.+++|++|++++|.+. .++.  +.++++|+.|++++|.+.....+..+++|+.|++
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc--ccCCcccccccccccccccccccccccccccccc
Confidence            56788888888877643  35777888888888888776 3433  5678888888888888777777888888888888


Q ss_pred             ccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccC
Q 042919          327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSI  406 (428)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  406 (428)
                      +++.....  ..+..+++|+.|++++|.+. .+ +.+..+++|+.|++++|++++..+ ...+++|+.|++++|+++. +
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~-i  187 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD-I  187 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-C
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCC-C
Confidence            88877643  34677888999999888886 33 357888899999999998875432 2278899999999998874 3


Q ss_pred             CcccccCCCCCEE
Q 042919          407 PGALRRSLSLTVL  419 (428)
Q Consensus       407 ~~~~~~~~~L~~L  419 (428)
                      + .++.+++|+.|
T Consensus       188 ~-~l~~L~~L~~L  199 (199)
T d2omxa2         188 S-VLAKLTNLESL  199 (199)
T ss_dssp             G-GGGGCTTCSEE
T ss_pred             c-cccCCCCCCcC
Confidence            3 47788888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.6e-16  Score=133.77  Aligned_cols=197  Identities=14%  Similarity=0.062  Sum_probs=100.8

Q ss_pred             CccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCC-CCccccCCCCCCEEECcCc-ccCCCCchhhhcCCCCCCE
Q 042919          224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGR-IPSSMSEMKRLESLDLSSN-NFSGELPRQFLSGCFSLSF  301 (428)
Q Consensus       224 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~  301 (428)
                      ++++|+++++.+. .++...+..+++|++|++++|.+... .+..+..++.++++.+..+ .+. ..+...+..+++|+.
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-ccccccccccccccc
Confidence            4555555555554 33333333356666666666655432 2334555666666655443 222 333444555666666


Q ss_pred             EeCCCcccccccccCCCCCcc---eeecccCccCccchhhhhcC-CCCcEEEccCCcccccCCcccCCCCCCcEE-eCCC
Q 042919          302 LSLSDNHLQGEVVFPNSTNLC---WLYLNNNHFSGKIQDGLSKA-TSLLELDLSNNMLYGQIPPWFGNLSGLQFL-DISE  376 (428)
Q Consensus       302 L~l~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L-~L~~  376 (428)
                      +++.++.+........+.+++   .+...++.+.......+..+ ..++.|++.+++++...+..+ ..++++.+ .+++
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~  186 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDN  186 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccc
Confidence            666666555444333333333   33334444443344444443 356666776666663333333 33444433 4555


Q ss_pred             CcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCC
Q 042919          377 NQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRD  423 (428)
Q Consensus       377 ~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  423 (428)
                      |+++......+ .+++|+.|++++|+++...+..|..+++|+.+++.+
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            56665545445 567777777777776644444566666666555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.6e-17  Score=140.12  Aligned_cols=39  Identities=23%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             hhcCCCCcEEEccCCC-CCCCCCccccCCCCCCEEECcCc
Q 042919          244 GKILPELLSLNLSENG-FEGRIPSSMSEMKRLESLDLSSN  282 (428)
Q Consensus       244 ~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~  282 (428)
                      ...+++|++|++++|. +++.....+.++++|++|++++|
T Consensus       171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             ccccccccccccccccCCCchhhhhhcccCcCCEEECCCC
Confidence            3335666666666542 34344444555555666665554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.6e-15  Score=125.40  Aligned_cols=143  Identities=28%  Similarity=0.294  Sum_probs=89.9

Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeec
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  326 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  326 (428)
                      +++|++|++++|.+++..  .+..+++|++|++++|++. .++.  +..+++|+.+++.+|.+.....+..++.++.+++
T Consensus        67 l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~  141 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL  141 (210)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCCEEeCCCccccCcc--ccccCcccccccccccccc-cccc--cccccccccccccccccccccccccccccccccc
Confidence            566666666666665322  3456666777777666665 3332  4556667777776666665555666677777777


Q ss_pred             ccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccC
Q 042919          327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHM  399 (428)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~  399 (428)
                      ++|.+++.  ..+..+++|+.+++++|++++ ++ .++++++|++|++++|++++. +..-.+++|+.|++++
T Consensus       142 ~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         142 GNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEE
T ss_pred             cccccccc--ccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCCC-hhhcCCCCCCEEEccC
Confidence            77766532  234566777777777777763 22 366777777777777777643 2222667777777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=3.2e-15  Score=122.50  Aligned_cols=139  Identities=28%  Similarity=0.349  Sum_probs=95.9

Q ss_pred             CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeec
Q 042919          247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  326 (428)
Q Consensus       247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  326 (428)
                      +++|++|++++|.+++..  .+.++++|++|++++|.+. .++.  +.+++.|+.++++++.......+..+++|+.|++
T Consensus        61 l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l  135 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  135 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             CCCcCcCccccccccCcc--cccCCcccccccccccccc-cccc--cccccccccccccccccccccccchhhhhHHhhh
Confidence            677777777777776432  2667777777777777665 3332  5567777777777777766666777788888888


Q ss_pred             ccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceE
Q 042919          327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRL  395 (428)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L  395 (428)
                      ++|.+...  ..+..+++|+.|++.+|.+++.  ..++++++|++|++++|++++.. ....+++|++|
T Consensus       136 ~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         136 SSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             hhhhhccc--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            87776532  3467778888888888877643  24777888888888888877532 22266777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=4.8e-16  Score=126.76  Aligned_cols=152  Identities=20%  Similarity=0.229  Sum_probs=89.9

Q ss_pred             CCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEE
Q 042919          272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELD  349 (428)
Q Consensus       272 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  349 (428)
                      +++++|++++|.++...+...|.++++|+.|++++|.+.....  +..+++|++|++++|.+....+.+|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            3455555555555433334444455555555555555543322  55566666677777766666666777777788888


Q ss_pred             ccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCcc
Q 042919          350 LSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF  426 (428)
Q Consensus       350 l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  426 (428)
                      |++|+++...+..|..+++|++|+|++|++............++.+.+..+.+....|..+   ..++.++++.+.+
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l  182 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEF  182 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhC
Confidence            8877777666667777778888888877766433322222345566666666665555443   3444555655544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.7e-15  Score=127.32  Aligned_cols=198  Identities=16%  Similarity=0.146  Sum_probs=151.1

Q ss_pred             cEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCC
Q 042919          226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS  305 (428)
Q Consensus       226 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  305 (428)
                      +.++.++..++ .+|..+   ++++++|++++|.+....+..|.++++|++|++++|.+.+.++...+.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666666665 666554   46899999999999866666789999999999999988766677778889999999876


Q ss_pred             C-ccccccc--ccCCCCCcceeecccCccCccchh-hhhcCCCCcEEEccCCcccccCCcccCCCC-CCcEEeCCCCcCC
Q 042919          306 D-NHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQD-GLSKATSLLELDLSNNMLYGQIPPWFGNLS-GLQFLDISENQLC  380 (428)
Q Consensus       306 ~-~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~L~~~~~~  380 (428)
                      . +.+....  .+..+++|++++++++.+...... .+..+..+..+...++.+....+..+.+++ .++.|++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4 4554333  378899999999999988754332 234456666666677777766666777765 7899999999998


Q ss_pred             cCCCCccccccCceE-EccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919          381 GSVPSSFNLSSLRRL-YMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS  427 (428)
Q Consensus       381 ~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  427 (428)
                      ......+...++.++ .+.+|.++..-+..|.++++|++|++++|+|+
T Consensus       167 ~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            777766666666655 56777888555567899999999999999986

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1e-14  Score=118.70  Aligned_cols=126  Identities=29%  Similarity=0.405  Sum_probs=88.8

Q ss_pred             CCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc---ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEc
Q 042919          274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL  350 (428)
Q Consensus       274 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  350 (428)
                      .++++.+++.++ .+|...   .+.+++|++++|.+....   .+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            356777777776 566542   357777888887775422   2566777777777777777666677777777777777


Q ss_pred             cCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCC
Q 042919          351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFN  403 (428)
Q Consensus       351 ~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  403 (428)
                      ++|+++...+..|.++++|++|+|++|+++...+..+ .+++|++|++++|++.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            7777776666677777777777777777776666666 6777777777777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.57  E-value=1.1e-15  Score=136.93  Aligned_cols=250  Identities=17%  Similarity=0.186  Sum_probs=113.0

Q ss_pred             ccchhHhhhCCCccEEEccCCcCCCCCchhhh---hcCCCCCEEEecCCccCCcc-----------cCCCCCCCccEEec
Q 042919          165 QALPSILLQQLDLRFIDLSHNKLQGIFPSWLL---QNNTKLDTLYLLNNSLSGNF-----------QLPSSKHDLLRLDI  230 (428)
Q Consensus       165 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~-----------~~~~~~~~L~~L~l  230 (428)
                      ..+...+.....|+.|++++|.+.+.....+.   ...+.|+.+.++++......           .....+++|++|++
T Consensus        21 ~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L  100 (344)
T d2ca6a1          21 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  100 (344)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence            34556677778888888888887655444432   34567777777765433211           11223445555555


Q ss_pred             CCCccccCCCchh---hhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCc
Q 042919          231 SHNKFSCQLPGNM---GKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN  307 (428)
Q Consensus       231 ~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  307 (428)
                      ++|.+.......+   ....++|+.|++++|.+.......+...            +............+.|+.+.++++
T Consensus       101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~------------l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1         101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA------------LQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH------------HHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             cccccccccccchhhhhcccccchheeccccccccccccccccc------------ccccccccccccCcccceeecccc
Confidence            5555443221111   1123455555555554321100000000            000000000112344455555444


Q ss_pred             ccccccc------cCCCCCcceeecccCccCcc-----chhhhhcCCCCcEEEccCCccccc----CCcccCCCCCCcEE
Q 042919          308 HLQGEVV------FPNSTNLCWLYLNNNHFSGK-----IQDGLSKATSLLELDLSNNMLYGQ----IPPWFGNLSGLQFL  372 (428)
Q Consensus       308 ~~~~~~~------~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L  372 (428)
                      .+.....      +..++.|++|++++|.+...     ....+..+++|+.|++++|.++..    +...+..+++|+.|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence            4432221      23344555555555554422     112234455555555555554322    22334455555555


Q ss_pred             eCCCCcCCcCCCCcc-------ccccCceEEccCCcCCcc----CCcccc-cCCCCCEEECCCCcc
Q 042919          373 DISENQLCGSVPSSF-------NLSSLRRLYMHMNAFNGS----IPGALR-RSLSLTVLDLRDNEF  426 (428)
Q Consensus       373 ~L~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~~~~  426 (428)
                      +|++|++++.....+       ..+.|++|++++|.+...    +...+. +++.|++|++++|.+
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            555555544322222       124555666666655421    122222 355566666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=114.57  Aligned_cols=111  Identities=23%  Similarity=0.185  Sum_probs=61.9

Q ss_pred             ccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcE
Q 042919          268 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE  347 (428)
Q Consensus       268 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  347 (428)
                      +.++..+++|++++|++. .++ ..+..+++|+.|++++|.+.....+..+++|++|++++|.++...+..+..+++|++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            345566777777777765 443 234456667777776666665544555666666666666655444444445555555


Q ss_pred             EEccCCcccccC-CcccCCCCCCcEEeCCCCcCC
Q 042919          348 LDLSNNMLYGQI-PPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       348 L~l~~~~i~~~~-~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      |++++|.+++.. ...+..+++|+.|++++|+++
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ceeccccccccccccccccccccchhhcCCCccc
Confidence            555555554221 123445555555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=9.9e-14  Score=103.51  Aligned_cols=117  Identities=21%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             CEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919          300 SFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL  379 (428)
Q Consensus       300 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~  379 (428)
                      +.|++++|.++....+..+++|++|++++|.+.. .+..+..+++|+.|++++|.++ .++ .++++++|+.|++++|++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCcc
Confidence            5688888888877778888888888888888874 4456788888888888888887 343 478888888888888888


Q ss_pred             CcCCC-Ccc-ccccCceEEccCCcCCcc---CCcccccCCCCCEE
Q 042919          380 CGSVP-SSF-NLSSLRRLYMHMNAFNGS---IPGALRRSLSLTVL  419 (428)
Q Consensus       380 ~~~~~-~~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L  419 (428)
                      ++... ..+ .+++|+.|++++|++...   ....+..+|+|+.|
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            75543 333 778888888888888632   12334557777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.6e-14  Score=111.48  Aligned_cols=125  Identities=18%  Similarity=0.099  Sum_probs=102.8

Q ss_pred             hcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 042919          293 LSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQF  371 (428)
Q Consensus       293 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  371 (428)
                      +.++..+++|++++|.|..... +..+++|+.|++++|.+...  +.+..+++|++|++++|+++...+..+..+++|+.
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            4567789999999999987655 46789999999999998754  45788999999999999998655556678999999


Q ss_pred             EeCCCCcCCcCCC-Ccc-ccccCceEEccCCcCCccCC----cccccCCCCCEEE
Q 042919          372 LDISENQLCGSVP-SSF-NLSSLRRLYMHMNAFNGSIP----GALRRSLSLTVLD  420 (428)
Q Consensus       372 L~L~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~  420 (428)
                      |++++|++.+... ..+ .+++|+.|++++|++. ..|    ..+..+|+|+.||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            9999999876433 334 7899999999999997 444    3578899999987

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=1.4e-14  Score=129.68  Aligned_cols=180  Identities=22%  Similarity=0.229  Sum_probs=87.5

Q ss_pred             ccEEEcCCCCC-----ccchhHhhhCCCccEEEccCCcCCCCC---ch------hhhhcCCCCCEEEecCCccCCc----
Q 042919          154 LKALNLRNCSL-----QALPSILLQQLDLRFIDLSHNKLQGIF---PS------WLLQNNTKLDTLYLLNNSLSGN----  215 (428)
Q Consensus       154 L~~L~l~~~~~-----~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~------~~~~~~~~L~~L~l~~~~~~~~----  215 (428)
                      +++|++++|.+     ..+...+...++|+.++++++......   +.      ..+..+++|+.|++++|.+...    
T Consensus        33 l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  112 (344)
T d2ca6a1          33 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP  112 (344)
T ss_dssp             CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHH
T ss_pred             CCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccc
Confidence            44444444433     223334445556666666655432111   11      1123456677777777665431    


Q ss_pred             -ccCCCCCCCccEEecCCCccccCCCchhh------------hcCCCCcEEEccCCCCCCCC----CccccCCCCCCEEE
Q 042919          216 -FQLPSSKHDLLRLDISHNKFSCQLPGNMG------------KILPELLSLNLSENGFEGRI----PSSMSEMKRLESLD  278 (428)
Q Consensus       216 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~  278 (428)
                       .......++|+.|++++|.+.......++            ...+.|+.+.++++.+....    ...+..++.|++++
T Consensus       113 l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~  192 (344)
T d2ca6a1         113 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK  192 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred             hhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccc
Confidence             11223567899999999987532222221            12455666666666554221    12234455666666


Q ss_pred             CcCcccCCCCc----hhhhcCCCCCCEEeCCCccccccc------ccCCCCCcceeecccCccCc
Q 042919          279 LSSNNFSGELP----RQFLSGCFSLSFLSLSDNHLQGEV------VFPNSTNLCWLYLNNNHFSG  333 (428)
Q Consensus       279 l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~  333 (428)
                      +++|.+.....    ...+..++.|+.|++++|.+....      .+..+++|++|++++|.+++
T Consensus       193 L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         193 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             cccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            66665542111    112233455555555555543321      13444555555555554443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=2.1e-13  Score=101.65  Aligned_cols=100  Identities=26%  Similarity=0.312  Sum_probs=48.5

Q ss_pred             EEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc-ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCc
Q 042919          276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM  354 (428)
Q Consensus       276 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  354 (428)
                      .|++++|.++ .++.  +..++.|++|++++|.+.... .+..+++|+.|++++|.++..  +.+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCcc--cccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc--CccccccccCeEECCCCc
Confidence            4555555554 3322  344555555555555554432 244555555555555555432  234455555555555555


Q ss_pred             ccccC-CcccCCCCCCcEEeCCCCcCC
Q 042919          355 LYGQI-PPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       355 i~~~~-~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      +++.. ...+..+++|+.|++++|+++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            54221 133445555555555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=2.6e-14  Score=116.36  Aligned_cols=126  Identities=25%  Similarity=0.282  Sum_probs=70.3

Q ss_pred             CcEEEccCC--CCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeec
Q 042919          250 LLSLNLSEN--GFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYL  326 (428)
Q Consensus       250 L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l  326 (428)
                      .+.+.+.+.  .+. ..+..+..+++|++|++++|.+. .++.  +..+++|+.|++++|.+..... ...+++|++|++
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Cccc--ccCCccccChhhccccccccccccccccccccccc
Confidence            444555432  122 34455666777777777777765 4432  4556677777777776654333 223345666666


Q ss_pred             ccCccCccchhhhhcCCCCcEEEccCCcccccCC-cccCCCCCCcEEeCCCCcCCc
Q 042919          327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP-PWFGNLSGLQFLDISENQLCG  381 (428)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~~~~~~  381 (428)
                      ++|.++..  ..+..+++|+.|++++|++++... ..+..+++|+.|++++|++..
T Consensus       101 ~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         101 SYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            66666532  335555666666666666653211 345566666666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.2e-11  Score=91.96  Aligned_cols=108  Identities=22%  Similarity=0.163  Sum_probs=82.5

Q ss_pred             CCCCCEEeCCCccccccc-ccCCCCCcceeecccC-ccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEe
Q 042919          296 CFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNN-HFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD  373 (428)
Q Consensus       296 ~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  373 (428)
                      +...+.++..++...+.. .+...++|++|++.++ .++.....+|.++++|+.|++++|+++...+.+|..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            344566777776665543 3677788888888766 47766677788888899999988888866777888888888999


Q ss_pred             CCCCcCCcCCCCccccccCceEEccCCcCC
Q 042919          374 ISENQLCGSVPSSFNLSSLRRLYMHMNAFN  403 (428)
Q Consensus       374 L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  403 (428)
                      |++|+++......+...+|+.|+|++|++.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCccc
Confidence            988888866666665557888888888885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-10  Score=90.43  Aligned_cols=107  Identities=21%  Similarity=0.078  Sum_probs=82.9

Q ss_pred             CCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcc-ccccc--ccCCCCCcceeecccCccCccchhhhhcCCCCcE
Q 042919          271 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNH-LQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE  347 (428)
Q Consensus       271 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  347 (428)
                      +...+.++..++... ..+.. +..+++|+.|++.+++ +....  .+.++++|+.|++++|.+....+.+|..+++|++
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCCc-cCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            444566888877766 44443 5677899999997664 65433  4888999999999999999888888999999999


Q ss_pred             EEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919          348 LDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       348 L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~  380 (428)
                      |+|++|+++...+..+. ...|+.|+|++|++.
T Consensus        85 L~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhc-cccccccccCCCccc
Confidence            99999999844444454 457999999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=1.3e-12  Score=106.22  Aligned_cols=133  Identities=27%  Similarity=0.253  Sum_probs=99.8

Q ss_pred             chhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCC
Q 042919          241 GNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTN  320 (428)
Q Consensus       241 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  320 (428)
                      ..+.. +++|++|++++|.+...  ..+..+++|++|++++|.+. .++.. ...++.|+.|++++|.+.....+..+++
T Consensus        42 ~sl~~-L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~-~~~~~~L~~L~l~~N~i~~l~~~~~l~~  116 (198)
T d1m9la_          42 ATLST-LKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQIASLSGIEKLVN  116 (198)
T ss_dssp             HHHHH-TTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSH-HHHHHHCCEEECSEEECCCHHHHHHHHH
T ss_pred             hHHhc-ccccceeECcccCCCCc--ccccCCccccChhhcccccc-ccccc-cccccccccccccccccccccccccccc
Confidence            34444 88999999999988743  35788899999999999887 45432 3345689999999999887766788899


Q ss_pred             cceeecccCccCccc-hhhhhcCCCCcEEEccCCcccccCCc----------ccCCCCCCcEEeCCCCcCC
Q 042919          321 LCWLYLNNNHFSGKI-QDGLSKATSLLELDLSNNMLYGQIPP----------WFGNLSGLQFLDISENQLC  380 (428)
Q Consensus       321 L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~----------~~~~~~~L~~L~L~~~~~~  380 (428)
                      |+.|++++|.+++.. ...+..+++|+.|++++|++....+.          .+..+|+|+.||  +.+++
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            999999999987543 25688899999999999987643222          145677888776  44444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.5e-08  Score=77.50  Aligned_cols=85  Identities=25%  Similarity=0.266  Sum_probs=61.5

Q ss_pred             hhhhhcCCCCcEEEccCCccccc--CCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCc----
Q 042919          336 QDGLSKATSLLELDLSNNMLYGQ--IPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPG----  408 (428)
Q Consensus       336 ~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~----  408 (428)
                      ...+..+++|+.|++++|+|+..  ++..+..+++|+.|++++|.+++...... ....|+.|++.+|++......    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            33445688899999999988743  23446678899999999998886544333 556789999999998754432    


Q ss_pred             ---ccccCCCCCEEE
Q 042919          409 ---ALRRSLSLTVLD  420 (428)
Q Consensus       409 ---~~~~~~~L~~L~  420 (428)
                         .+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               356789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.25  E-value=1.6e-07  Score=73.17  Aligned_cols=84  Identities=14%  Similarity=0.094  Sum_probs=42.6

Q ss_pred             CCCCCCEEeCCCc-ccccccc------cCCCCCcceeecccCccCccc----hhhhhcCCCCcEEEccCCccccc----C
Q 042919          295 GCFSLSFLSLSDN-HLQGEVV------FPNSTNLCWLYLNNNHFSGKI----QDGLSKATSLLELDLSNNMLYGQ----I  359 (428)
Q Consensus       295 ~~~~L~~L~l~~~-~~~~~~~------~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~----~  359 (428)
                      ..+.|++|+++++ .+.....      +...+.|++|++++|.+++..    ...+...++|++|++++|.+++.    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4566666666653 3433211      445556666666666554322    22334455566666666655432    2


Q ss_pred             CcccCCCCCCcEEeCCCCc
Q 042919          360 PPWFGNLSGLQFLDISENQ  378 (428)
Q Consensus       360 ~~~~~~~~~L~~L~L~~~~  378 (428)
                      ..++...+.|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            2234445555555555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.9e-08  Score=76.35  Aligned_cols=69  Identities=23%  Similarity=0.160  Sum_probs=54.2

Q ss_pred             CcccCCCCCCcEEeCCCCcCCcCCC--Ccc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919          360 PPWFGNLSGLQFLDISENQLCGSVP--SSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG  428 (428)
Q Consensus       360 ~~~~~~~~~L~~L~L~~~~~~~~~~--~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (428)
                      +.....++.|+.|+|++|+++...+  ..+ .+++|+.|++++|.+....+..+.....|+.++++|||+++
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3445678999999999999986543  223 78999999999999985544444556689999999999863

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.97  E-value=4.5e-06  Score=64.69  Aligned_cols=58  Identities=16%  Similarity=0.225  Sum_probs=25.6

Q ss_pred             CCCCCEEeCCCcccccccc------cCCCCCcceeecccCccCccc----hhhhhcCCCCcEEEccCC
Q 042919          296 CFSLSFLSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKI----QDGLSKATSLLELDLSNN  353 (428)
Q Consensus       296 ~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~  353 (428)
                      .+.|+.|++++|.+.+...      +...+.|++|++++|.+++..    ..++...++|++|++.++
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3445555555554443221      233444555555555544322    122334444555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.77  E-value=2.5e-06  Score=66.22  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=41.1

Q ss_pred             cCCCCCCEEeCCC-cccccccc------cCCCCCcceeecccCccCccch----hhhhcCCCCcEEEccCCccccc----
Q 042919          294 SGCFSLSFLSLSD-NHLQGEVV------FPNSTNLCWLYLNNNHFSGKIQ----DGLSKATSLLELDLSNNMLYGQ----  358 (428)
Q Consensus       294 ~~~~~L~~L~l~~-~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~----  358 (428)
                      ...+.|++|++++ +.+.....      +...++|++|++++|.+++...    ..+...++++.+++.++.+++.    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4456777777765 33433221      4455666666666666554322    2334455666666666555422    


Q ss_pred             CCcccCCCCCCcEEeC
Q 042919          359 IPPWFGNLSGLQFLDI  374 (428)
Q Consensus       359 ~~~~~~~~~~L~~L~L  374 (428)
                      +...+...+.|+.++|
T Consensus        94 l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          94 LVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCccccEEee
Confidence            2233444555554333

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.62  E-value=1.5e-05  Score=61.59  Aligned_cols=83  Identities=19%  Similarity=0.173  Sum_probs=38.4

Q ss_pred             CCCCCCEEeCCCcccccccc------cCCCCCcceeecccCccCccc----hhhhhcCCCCcEEEcc--CCcccc----c
Q 042919          295 GCFSLSFLSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKI----QDGLSKATSLLELDLS--NNMLYG----Q  358 (428)
Q Consensus       295 ~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~--~~~i~~----~  358 (428)
                      ..+.|++|++++|.+.....      +...+.++.+++++|.+++..    ..++...++|+.++|.  ++.+++    .
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            44555556665555543322      333455555555555554332    2334445555554443  333332    1


Q ss_pred             CCcccCCCCCCcEEeCCCC
Q 042919          359 IPPWFGNLSGLQFLDISEN  377 (428)
Q Consensus       359 ~~~~~~~~~~L~~L~L~~~  377 (428)
                      +...+...+.|++|+++.+
T Consensus       124 La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCCCcCEEeCcCC
Confidence            2223334555555555444